Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481300 | XP_013444227.1 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481300 | sp|F4IXJ7|MED6_ARATH | 57.971 | 276 | 74 | 3 | 14 | 248 | 24 | 298 | 2.42e-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481300 | A0A072TL70 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0481300 | TR | MED6 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0481300 | Msa1238150 | 0.865788 | 4.578236e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481300 | MtrunA17_Chr8g0341301 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 509 |
| Msa0481300 | MtrunA17_Chr8g0356941 | 100.000 | 116 | 0 | 0 | 65 | 180 | 1 | 116 | 8.79e-81 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481300 | AT3G21350.1 | 68.085 | 235 | 74 | 1 | 14 | 248 | 24 | 257 | 8.49e-104 | 301 |
| Msa0481300 | AT3G21350.2 | 57.971 | 276 | 74 | 3 | 14 | 248 | 24 | 298 | 2.46e-95 | 281 |
Find 83 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTGCTTCCTGAGTTTC+AGG | 0.111896 | 3_3:-87119958 | None:intergenic |
| AATGCTTGCTTATTATATTT+TGG | 0.131733 | 3_3:+87115522 | Msa0481300:CDS |
| TGCAGGACCTTGATCAAGTA+TGG | 0.244509 | 3_3:-87120004 | None:intergenic |
| GTTAACTTTATGTTATTCTT+TGG | 0.255357 | 3_3:+87120104 | Msa0481300:three_prime_UTR |
| GATTAATGTTTATTCCTTTC+GGG | 0.268497 | 3_3:+87120062 | Msa0481300:three_prime_UTR |
| TGATTAATGTTTATTCCTTT+CGG | 0.268854 | 3_3:+87120061 | Msa0481300:three_prime_UTR |
| CATAAAGTTAACCATCTTTC+GGG | 0.270475 | 3_3:-87120093 | None:intergenic |
| CACAGTGATATTTACATTCA+TGG | 0.278321 | 3_3:-87120158 | None:intergenic |
| ATTTCAGTTTAGTCAATATA+TGG | 0.279026 | 3_3:+87120202 | Msa0481300:three_prime_UTR |
| TCCTTAGCCGCCTTTGGTTC+CGG | 0.292862 | 3_3:-87117998 | None:intergenic |
| AGCATTGGAGTAACTTTATC+AGG | 0.301759 | 3_3:-87115505 | None:intergenic |
| TATGCTTCAGAGATCAATTA+TGG | 0.306984 | 3_3:+87115180 | Msa0481300:CDS |
| ACATAAAGTTAACCATCTTT+CGG | 0.308898 | 3_3:-87120094 | None:intergenic |
| TTCTCAGTTTCTGCTGTTGA+AGG | 0.324297 | 3_3:-87119931 | None:intergenic |
| AAAACAATCTTAATTATCAT+TGG | 0.348402 | 3_3:+87120241 | Msa0481300:three_prime_UTR |
| ATTGTCTCCTTAGCCGCCTT+TGG | 0.366190 | 3_3:-87118004 | None:intergenic |
| ATTCCGGTCATGTCGGTTCC+CGG | 0.388633 | 3_3:-87115158 | None:intergenic |
| AATGGTGGCGGAGGCGGAGC+AGG | 0.400010 | 3_3:-87119889 | None:intergenic |
| CCGTCTAACATTCCCATTCC+CGG | 0.401387 | 3_3:-87115113 | None:intergenic |
| CTTTATCACCTTTCTACGAT+TGG | 0.408696 | 3_3:+87115249 | Msa0481300:CDS |
| TGAAAACGAGACTACAATTC+CGG | 0.419986 | 3_3:+87117979 | Msa0481300:CDS |
| GGAACATACCCTTCTGGAAA+TGG | 0.420482 | 3_3:-87119907 | None:intergenic |
| AAGTTGGAGAAGATAGGATA+TGG | 0.422814 | 3_3:+87116264 | Msa0481300:CDS |
| TTGATCTCTGAAGCATATTC+CGG | 0.424128 | 3_3:-87115174 | None:intergenic |
| TCTGGAAATGGTGGCGGAGG+CGG | 0.425379 | 3_3:-87119895 | None:intergenic |
| TAGGGTTTCAGGAAAATGAT+TGG | 0.437092 | 3_3:+87115412 | Msa0481300:intron |
| GTGGATGATGAGAACGCATT+CGG | 0.442890 | 3_3:-87115292 | None:intergenic |
| CAGCTGCTTCCTGAGTTTCA+GGG | 0.462781 | 3_3:-87119957 | None:intergenic |
| GGGAAGGCGTACCCGAAAGA+TGG | 0.463156 | 3_3:+87120082 | Msa0481300:three_prime_UTR |
| TCCGGAACCAAAGGCGGCTA+AGG | 0.463236 | 3_3:+87117997 | Msa0481300:CDS |
| GGTGGCGGAGGCGGAGCAGG+TGG | 0.464187 | 3_3:-87119886 | None:intergenic |
| TACTACAGCTGCATCTAAGT+TGG | 0.467810 | 3_3:+87116248 | Msa0481300:CDS |
| GAGATGGCGACACCGGGAAT+GGG | 0.471762 | 3_3:+87115101 | Msa0481300:exon |
| ATTCCCGGTGTCGCCATCTC+CGG | 0.472757 | 3_3:-87115098 | None:intergenic |
| GAAGGTGGAACATACCCTTC+TGG | 0.474764 | 3_3:-87119913 | None:intergenic |
| TGAGAAAGGCCCTGAAACTC+AGG | 0.475765 | 3_3:+87119948 | Msa0481300:CDS |
| TCAGTTTCTGCTGTTGAAGG+TGG | 0.476136 | 3_3:-87119928 | None:intergenic |
| GGAGATGGCGACACCGGGAA+TGG | 0.476646 | 3_3:+87115100 | Msa0481300:exon |
| GGCACTATATTATATTGAAA+AGG | 0.479926 | 3_3:+87116221 | Msa0481300:CDS |
| ATATGTGTTGAGTGAAGTTA+TGG | 0.488473 | 3_3:+87115441 | Msa0481300:CDS |
| AGTACCGACGGCGCAACCAC+CGG | 0.490492 | 3_3:+87115139 | Msa0481300:CDS |
| GTTCCCGGTGGTTGCGCCGT+CGG | 0.494514 | 3_3:-87115143 | None:intergenic |
| AAAATATAATAAGCAAGCAT+TGG | 0.508033 | 3_3:-87115520 | None:intergenic |
| GACTACAATTCCGGAACCAA+AGG | 0.516918 | 3_3:+87117988 | Msa0481300:CDS |
| TTCGGGTACGCCTTCCCGAA+AGG | 0.519458 | 3_3:-87120076 | None:intergenic |
| GCATCTAAGTTGGAGAAGAT+AGG | 0.520492 | 3_3:+87116258 | Msa0481300:CDS |
| GTACCGACGGCGCAACCACC+GGG | 0.520900 | 3_3:+87115140 | Msa0481300:CDS |
| GGTGTCGCCATCTCCGGCAC+CGG | 0.523288 | 3_3:-87115092 | None:intergenic |
| CACTGAGAGAGAACCGGTGC+CGG | 0.524691 | 3_3:+87115079 | Msa0481300:five_prime_UTR |
| CCACCGGGAACCGACATGAC+CGG | 0.527398 | 3_3:+87115155 | Msa0481300:CDS |
| TCACAGCACTGAGAGAGAAC+CGG | 0.539374 | 3_3:+87115073 | Msa0481300:five_prime_UTR |
| GAGAGAACCGGTGCCGGAGA+TGG | 0.543791 | 3_3:+87115085 | Msa0481300:exon |
| CCTTCTGGAAATGGTGGCGG+AGG | 0.545037 | 3_3:-87119898 | None:intergenic |
| GCAGGACCTTGATCAAGTAT+GGG | 0.546098 | 3_3:-87120003 | None:intergenic |
| TCTTGCTTCCTTGCAACGCA+AGG | 0.547305 | 3_3:+87118060 | Msa0481300:CDS |
| GTCCACTGCACTTCGCTACA+CGG | 0.547653 | 3_3:+87120273 | Msa0481300:three_prime_UTR |
| CTTAAAAGAAATTAAGCGAG+TGG | 0.550328 | 3_3:+87118030 | Msa0481300:CDS |
| TACCCTTCTGGAAATGGTGG+CGG | 0.551262 | 3_3:-87119901 | None:intergenic |
| GTGCCGGAGATGGCGACACC+GGG | 0.551916 | 3_3:+87115095 | Msa0481300:exon |
| GTTGATCCCATACTTGATCA+AGG | 0.558709 | 3_3:+87119997 | Msa0481300:CDS |
| GGTGCCGGAGATGGCGACAC+CGG | 0.565787 | 3_3:+87115094 | Msa0481300:exon |
| TCAACTCACCTTGCGTTGCA+AGG | 0.566309 | 3_3:-87118068 | None:intergenic |
| TTAGAAGTCCAATCGTAGAA+AGG | 0.566992 | 3_3:-87115257 | None:intergenic |
| GTCCGTGTAGCGAAGTGCAG+TGG | 0.573843 | 3_3:-87120275 | None:intergenic |
| AATGTTTATTCCTTTCGGGA+AGG | 0.579907 | 3_3:+87120066 | Msa0481300:three_prime_UTR |
| TTATCATGAAGAAGCAGAAG+AGG | 0.585561 | 3_3:+87115476 | Msa0481300:CDS |
| CTCCGCCACCATTTCCAGAA+GGG | 0.586553 | 3_3:+87119899 | Msa0481300:CDS |
| TATCATGAAGAAGCAGAAGA+GGG | 0.593643 | 3_3:+87115477 | Msa0481300:CDS |
| TCAACAGCAGAAACTGAGAA+AGG | 0.597039 | 3_3:+87119934 | Msa0481300:CDS |
| GTTAGACGGCGGAGTACCGA+CGG | 0.600181 | 3_3:+87115127 | Msa0481300:CDS |
| CCTCCGCCACCATTTCCAGA+AGG | 0.602841 | 3_3:+87119898 | Msa0481300:CDS |
| AATTACGTACGTGAGTTGAG+AGG | 0.602924 | 3_3:-87115321 | None:intergenic |
| TCAAGTATGGGATCAACAGT+AGG | 0.616233 | 3_3:-87119991 | None:intergenic |
| CCGGGAATGGGAATGTTAGA+CGG | 0.617152 | 3_3:+87115113 | Msa0481300:CDS |
| TACAATTCCGGAACCAAAGG+CGG | 0.617747 | 3_3:+87117991 | Msa0481300:CDS |
| GAAGCATATTCCGGTCATGT+CGG | 0.643592 | 3_3:-87115165 | None:intergenic |
| ACATACCCTTCTGGAAATGG+TGG | 0.643798 | 3_3:-87119904 | None:intergenic |
| AAGACGAGGTTACGATCGAG+TGG | 0.652262 | 3_3:-87115215 | None:intergenic |
| GTGAGTTGAGAGGAATCGAG+TGG | 0.672007 | 3_3:-87115311 | None:intergenic |
| CCGGTCATGTCGGTTCCCGG+TGG | 0.674640 | 3_3:-87115155 | None:intergenic |
| AAGCGAAGTAATCGAAGACG+AGG | 0.677731 | 3_3:-87115229 | None:intergenic |
| AGACGAGGTTACGATCGAGT+GGG | 0.681742 | 3_3:-87115214 | None:intergenic |
| GGAATGGGAATGTTAGACGG+CGG | 0.769986 | 3_3:+87115116 | Msa0481300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTATTTCAAATATT+TGG | + | chr3_3:87116143-87116162 | Msa0481300:intron | 10.0% |
| !!! | AAAATAGATTTTTTTTTTAG+AGG | + | chr3_3:87117313-87117332 | Msa0481300:intron | 10.0% |
| !!! | AAAAAAAGTGATTTTTATTA+CGG | + | chr3_3:87117429-87117448 | Msa0481300:intron | 10.0% |
| !! | CAAAAAATAAATAAAATCAT+TGG | - | chr3_3:87117912-87117931 | None:intergenic | 10.0% |
| !! | TAATTTATTTATTACAACTT+TGG | + | chr3_3:87119312-87119331 | Msa0481300:intron | 10.0% |
| !! | ATTAAAAAAGAAGTAATTAT+GGG | - | chr3_3:87119568-87119587 | None:intergenic | 10.0% |
| !! | AATTAAAAAAGAAGTAATTA+TGG | - | chr3_3:87119569-87119588 | None:intergenic | 10.0% |
| !! | TTGAATAAAATTAGAAAAGA+TGG | - | chr3_3:87115625-87115644 | None:intergenic | 15.0% |
| !!! | TTATTAAGCAATTTTGTTTA+TGG | + | chr3_3:87116567-87116586 | Msa0481300:intron | 15.0% |
| !! | TATTAACTATAAATGTGTAA+CGG | - | chr3_3:87116597-87116616 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAGTTGTAACAAA+CGG | - | chr3_3:87117220-87117239 | None:intergenic | 15.0% |
| !!! | AACAAATAATTTAGTTTGTT+TGG | - | chr3_3:87117408-87117427 | None:intergenic | 15.0% |
| !!! | TTATTTTAATCCTTAACAAA+CGG | + | chr3_3:87117533-87117552 | Msa0481300:intron | 15.0% |
| !! | GAAATAATTTGAACTATTTA+TGG | + | chr3_3:87118233-87118252 | Msa0481300:intron | 15.0% |
| !!! | TATACAGAAATTTTAGATAA+AGG | - | chr3_3:87119232-87119251 | None:intergenic | 15.0% |
| !!! | TACTTCTTTTTTAATTCAAT+AGG | + | chr3_3:87119573-87119592 | Msa0481300:intron | 15.0% |
| !!! | AAAAAGAATGAAATTTTGAT+AGG | + | chr3_3:87120026-87120045 | Msa0481300:exon | 15.0% |
| !! | AAAACAATCTTAATTATCAT+TGG | + | chr3_3:87120241-87120260 | Msa0481300:three_prime_UTR | 15.0% |
| !! | TGAAATTGAGAATGAAAATT+AGG | - | chr3_3:87115364-87115383 | None:intergenic | 20.0% |
| !! | AAAATATAATAAGCAAGCAT+TGG | - | chr3_3:87115523-87115542 | None:intergenic | 20.0% |
| !!! | AATGCTTGCTTATTATATTT+TGG | + | chr3_3:87115522-87115541 | Msa0481300:CDS | 20.0% |
| !!! | TTTATTTCAAATATTTGGTG+TGG | + | chr3_3:87116148-87116167 | Msa0481300:intron | 20.0% |
| !!! | TTCTATCACATTTTTATACA+GGG | - | chr3_3:87116503-87116522 | None:intergenic | 20.0% |
| !!! | TTTCTATCACATTTTTATAC+AGG | - | chr3_3:87116504-87116523 | None:intergenic | 20.0% |
| !! | TATAGTTAATAGTGTTTGTT+TGG | + | chr3_3:87116606-87116625 | Msa0481300:intron | 20.0% |
| !! | ATAGTTAATAGTGTTTGTTT+GGG | + | chr3_3:87116607-87116626 | Msa0481300:intron | 20.0% |
| !!! | TTTTCAAAATCCAAAAACTA+AGG | - | chr3_3:87117103-87117122 | None:intergenic | 20.0% |
| !! | TTAAAAAAGCTATAACAAAC+GGG | - | chr3_3:87117146-87117165 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGCTATAACAAA+CGG | - | chr3_3:87117147-87117166 | None:intergenic | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | - | chr3_3:87117389-87117408 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | - | chr3_3:87117390-87117409 | None:intergenic | 20.0% |
| !!! | TATTTTAATCCTTAACAAAC+GGG | + | chr3_3:87117534-87117553 | Msa0481300:intron | 20.0% |
| !! | TTAATAAAAAAGAAAGGGAT+AGG | + | chr3_3:87118157-87118176 | Msa0481300:intron | 20.0% |
| !! | CACAATTTCATAAAATACTT+GGG | - | chr3_3:87118206-87118225 | None:intergenic | 20.0% |
| !! | ACACAATTTCATAAAATACT+TGG | - | chr3_3:87118207-87118226 | None:intergenic | 20.0% |
| !! | AATTGGAAAGATTAAATAAG+AGG | - | chr3_3:87118497-87118516 | None:intergenic | 20.0% |
| !! | TTAGTTAAATTCCTATAGTT+AGG | - | chr3_3:87119725-87119744 | None:intergenic | 20.0% |
| !! | TGATTAATGTTTATTCCTTT+CGG | + | chr3_3:87120061-87120080 | Msa0481300:three_prime_UTR | 20.0% |
| !! | GTTAACTTTATGTTATTCTT+TGG | + | chr3_3:87120104-87120123 | Msa0481300:three_prime_UTR | 20.0% |
| !! | ATTTCAGTTTAGTCAATATA+TGG | + | chr3_3:87120202-87120221 | Msa0481300:three_prime_UTR | 20.0% |
| ! | AATGAAAATTAGGTTAGGTT+AGG | - | chr3_3:87115354-87115373 | None:intergenic | 25.0% |
| ! | TTGAGAATGAAAATTAGGTT+AGG | - | chr3_3:87115359-87115378 | None:intergenic | 25.0% |
| !!! | TTTCACTCTTAACCATTTTT+AGG | + | chr3_3:87115393-87115412 | Msa0481300:intron | 25.0% |
| !!! | TTCACTCTTAACCATTTTTA+GGG | + | chr3_3:87115394-87115413 | Msa0481300:intron | 25.0% |
| ! | TTCTTCATGATAAAAAGATG+AGG | - | chr3_3:87115469-87115488 | None:intergenic | 25.0% |
| !!! | CTTGCTTATTATATTTTGGA+TGG | + | chr3_3:87115526-87115545 | Msa0481300:CDS | 25.0% |
| !! | AATCTAAAATATTAGTGTCG+TGG | + | chr3_3:87115709-87115728 | Msa0481300:intron | 25.0% |
| ! | GGCACTATATTATATTGAAA+AGG | + | chr3_3:87116221-87116240 | Msa0481300:CDS | 25.0% |
| !! | TGTCATGATTTTTGATATGA+TGG | + | chr3_3:87116372-87116391 | Msa0481300:intron | 25.0% |
| !!! | CAGTTTTTTTAATAGCAGTT+TGG | - | chr3_3:87116665-87116684 | None:intergenic | 25.0% |
| !!! | AAGCTTTATTTCACAATAGA+AGG | - | chr3_3:87116791-87116810 | None:intergenic | 25.0% |
| ! | ATGTTACTGTTATTGTTCTA+AGG | - | chr3_3:87116823-87116842 | None:intergenic | 25.0% |
| ! | TAACGAAATTATGCAAAAAG+GGG | - | chr3_3:87116904-87116923 | None:intergenic | 25.0% |
| ! | CTAACGAAATTATGCAAAAA+GGG | - | chr3_3:87116905-87116924 | None:intergenic | 25.0% |
| ! | TCTAACGAAATTATGCAAAA+AGG | - | chr3_3:87116906-87116925 | None:intergenic | 25.0% |
| ! | TCTGTATTACATAGTAATTG+TGG | - | chr3_3:87117072-87117091 | None:intergenic | 25.0% |
| ! | TGGATACAACTATATAAAAG+GGG | - | chr3_3:87117388-87117407 | None:intergenic | 25.0% |
| ! | AGGAAGAACATAAGATATAA+TGG | - | chr3_3:87117859-87117878 | None:intergenic | 25.0% |
| ! | TAAAAATTTCAACAAGAACG+TGG | - | chr3_3:87117888-87117907 | None:intergenic | 25.0% |
| !! | ATTGTTTGAAAAGTACACAA+TGG | - | chr3_3:87118104-87118123 | None:intergenic | 25.0% |
| ! | AAGAGGATATTAATTTACTC+AGG | - | chr3_3:87118480-87118499 | None:intergenic | 25.0% |
| !!! | ACTATTCTATTTCTAACCAT+AGG | + | chr3_3:87118984-87119003 | Msa0481300:intron | 25.0% |
| !!! | CTATTCTATTTCTAACCATA+GGG | + | chr3_3:87118985-87119004 | Msa0481300:intron | 25.0% |
| !! | TCTATTCTTCTTAGTTCTTA+TGG | - | chr3_3:87119537-87119556 | None:intergenic | 25.0% |
| !! | CAAAATTTCATTCTTTTTGC+AGG | - | chr3_3:87120024-87120043 | None:intergenic | 25.0% |
| !!! | AATGAAATTTTGATAGGTAC+AGG | + | chr3_3:87120032-87120051 | Msa0481300:exon | 25.0% |
| ! | GATTAATGTTTATTCCTTTC+GGG | + | chr3_3:87120062-87120081 | Msa0481300:three_prime_UTR | 25.0% |
| ! | ACATAAAGTTAACCATCTTT+CGG | - | chr3_3:87120097-87120116 | None:intergenic | 25.0% |
| TATGCTTCAGAGATCAATTA+TGG | + | chr3_3:87115180-87115199 | Msa0481300:CDS | 30.0% | |
| AATTAGGTTAGGTTAGGTTA+CGG | - | chr3_3:87115348-87115367 | None:intergenic | 30.0% | |
| !!! | TTAACCATTTTTAGGGTTTC+AGG | + | chr3_3:87115401-87115420 | Msa0481300:intron | 30.0% |
| ! | TTTTCCTGAAACCCTAAAAA+TGG | - | chr3_3:87115408-87115427 | None:intergenic | 30.0% |
| ATATGTGTTGAGTGAAGTTA+TGG | + | chr3_3:87115441-87115460 | Msa0481300:CDS | 30.0% | |
| GCAAAAACATTGGATAATTG+AGG | - | chr3_3:87115568-87115587 | None:intergenic | 30.0% | |
| AATTCTAGCAGCAAAAACAT+TGG | - | chr3_3:87115578-87115597 | None:intergenic | 30.0% | |
| ! | ATGAAGTGTTAGTGTATGTT+TGG | + | chr3_3:87115791-87115810 | Msa0481300:intron | 30.0% |
| TCAAGTAGAATCAATTCTTG+TGG | - | chr3_3:87115904-87115923 | None:intergenic | 30.0% | |
| TTTGTGACATTGATCTTGTA+GGG | + | chr3_3:87116195-87116214 | Msa0481300:intron | 30.0% | |
| !!! | GATTTTTTCTCTCTCTCTTT+TGG | + | chr3_3:87116294-87116313 | Msa0481300:intron | 30.0% |
| GTTAAGAACTTTGATGTCAA+CGG | + | chr3_3:87116447-87116466 | Msa0481300:intron | 30.0% | |
| ! | TTTTATACAGGGTCTAAGAA+AGG | - | chr3_3:87116492-87116511 | None:intergenic | 30.0% |
| AAATGTGATAGAAACTTTGC+AGG | + | chr3_3:87116510-87116529 | Msa0481300:intron | 30.0% | |
| AATGTGATAGAAACTTTGCA+GGG | + | chr3_3:87116511-87116530 | Msa0481300:intron | 30.0% | |
| ! | AATAGCAGTTTGGTTCATTT+CGG | - | chr3_3:87116655-87116674 | None:intergenic | 30.0% |
| ! | ATATTGCTATTACGATGTGA+TGG | + | chr3_3:87116961-87116980 | Msa0481300:intron | 30.0% |
| TCCCATTAAGTGAATAGTAT+CGG | - | chr3_3:87116998-87117017 | None:intergenic | 30.0% | |
| TTTAGAGGAGAGAGAAAATA+TGG | + | chr3_3:87117328-87117347 | Msa0481300:intron | 30.0% | |
| !!! | ACTGGTTTTCAACAGATTAA+GGG | - | chr3_3:87117560-87117579 | None:intergenic | 30.0% |
| !!! | AACTGGTTTTCAACAGATTA+AGG | - | chr3_3:87117561-87117580 | None:intergenic | 30.0% |
| TAATCTGTTGAAAACCAGTT+TGG | + | chr3_3:87117561-87117580 | Msa0481300:intron | 30.0% | |
| ATACCTCAACAATGGAAAAA+GGG | - | chr3_3:87117735-87117754 | None:intergenic | 30.0% | |
| TATACCTCAACAATGGAAAA+AGG | - | chr3_3:87117736-87117755 | None:intergenic | 30.0% | |
| ! | TTTTTCCATTGTTGAGGTAT+AGG | + | chr3_3:87117735-87117754 | Msa0481300:intron | 30.0% |
| CTTAAAAGAAATTAAGCGAG+TGG | + | chr3_3:87118030-87118049 | Msa0481300:CDS | 30.0% | |
| ATTACATAGCACATCATTAG+AGG | + | chr3_3:87118122-87118141 | Msa0481300:intron | 30.0% | |
| ! | TCTTACTGATTAGTAGTTTG+TGG | + | chr3_3:87118714-87118733 | Msa0481300:intron | 30.0% |
| ! | CTTACTGATTAGTAGTTTGT+GGG | + | chr3_3:87118715-87118734 | Msa0481300:intron | 30.0% |
| ! | CTCTATGTTTCTGAAAAAAG+AGG | - | chr3_3:87118761-87118780 | None:intergenic | 30.0% |
| GTTTGACAGAACAACATAAA+AGG | - | chr3_3:87118966-87118985 | None:intergenic | 30.0% | |
| AGTTTCACAGAACAACATAA+AGG | - | chr3_3:87119025-87119044 | None:intergenic | 30.0% | |
| ATCATTACTAGTAACCAATG+AGG | - | chr3_3:87119089-87119108 | None:intergenic | 30.0% | |
| !!! | AAGTTTTTTCTCCTTTTCAC+AGG | + | chr3_3:87119493-87119512 | Msa0481300:intron | 30.0% |
| !!! | AGTTTTTTCTCCTTTTCACA+GGG | + | chr3_3:87119494-87119513 | Msa0481300:intron | 30.0% |
| ACTAAGAAGAATAGAAGTCT+TGG | + | chr3_3:87119542-87119561 | Msa0481300:intron | 30.0% | |
| TGTTGTCGAAAAGTTATTTG+CGG | + | chr3_3:87119629-87119648 | Msa0481300:intron | 30.0% | |
| !! | CTCTGGTTTGTTATTACAAA+AGG | - | chr3_3:87119678-87119697 | None:intergenic | 30.0% |
| ! | CTTTTGTAATAACAAACCAG+AGG | + | chr3_3:87119676-87119695 | Msa0481300:intron | 30.0% |
| GTTAAATTCCTATAGTTAGG+AGG | - | chr3_3:87119722-87119741 | None:intergenic | 30.0% | |
| TTGCTGATAAACACAAACTT+AGG | + | chr3_3:87119763-87119782 | Msa0481300:intron | 30.0% | |
| CATAAAGTTAACCATCTTTC+GGG | - | chr3_3:87120096-87120115 | None:intergenic | 30.0% | |
| CACAGTGATATTTACATTCA+TGG | - | chr3_3:87120161-87120180 | None:intergenic | 30.0% | |
| !!! | ATTGTTTTTGCTTACACTGT+CGG | - | chr3_3:87120229-87120248 | None:intergenic | 30.0% |
| !! | TTGATCTCTGAAGCATATTC+CGG | - | chr3_3:87115177-87115196 | None:intergenic | 35.0% |
| CTTTATCACCTTTCTACGAT+TGG | + | chr3_3:87115249-87115268 | Msa0481300:CDS | 35.0% | |
| TTAGAAGTCCAATCGTAGAA+AGG | - | chr3_3:87115260-87115279 | None:intergenic | 35.0% | |
| ATTAGGTTAGGTTAGGTTAC+GGG | - | chr3_3:87115347-87115366 | None:intergenic | 35.0% | |
| TAGGGTTTCAGGAAAATGAT+TGG | + | chr3_3:87115412-87115431 | Msa0481300:intron | 35.0% | |
| TTATCATGAAGAAGCAGAAG+AGG | + | chr3_3:87115476-87115495 | Msa0481300:CDS | 35.0% | |
| TATCATGAAGAAGCAGAAGA+GGG | + | chr3_3:87115477-87115496 | Msa0481300:CDS | 35.0% | |
| ! | AGCATTGGAGTAACTTTATC+AGG | - | chr3_3:87115508-87115527 | None:intergenic | 35.0% |
| TCAACAAACCTTATGTAGAC+CGG | + | chr3_3:87115641-87115660 | Msa0481300:intron | 35.0% | |
| CTAAAATATTAGTGTCGTGG+CGG | + | chr3_3:87115712-87115731 | Msa0481300:intron | 35.0% | |
| !! | TGTATGTTTGGTTCCACTTT+TGG | + | chr3_3:87115803-87115822 | Msa0481300:intron | 35.0% |
| ! | AATTTTGTCTCCTCCAAAAG+TGG | - | chr3_3:87115819-87115838 | None:intergenic | 35.0% |
| !! | TCTTGCTACAATTGAGTTGA+AGG | - | chr3_3:87116026-87116045 | None:intergenic | 35.0% |
| GTTTGTGACATTGATCTTGT+AGG | + | chr3_3:87116194-87116213 | Msa0481300:intron | 35.0% | |
| AAGTTGGAGAAGATAGGATA+TGG | + | chr3_3:87116264-87116283 | Msa0481300:CDS | 35.0% | |
| !! | TTTCTCTCTCTCTTTTGGTT+TGG | + | chr3_3:87116299-87116318 | Msa0481300:intron | 35.0% |
| ! | GTTTGTTACTCACGAAAACA+AGG | + | chr3_3:87116333-87116352 | Msa0481300:intron | 35.0% |
| AACTTGTAATGCCTAGACTT+CGG | + | chr3_3:87116744-87116763 | Msa0481300:intron | 35.0% | |
| GTGAAATAAAGCTTCAGTTC+AGG | + | chr3_3:87116797-87116816 | Msa0481300:intron | 35.0% | |
| ACTCAAACAAAATCACCATG+AGG | - | chr3_3:87116875-87116894 | None:intergenic | 35.0% | |
| GCCGATACTATTCACTTAAT+GGG | + | chr3_3:87116994-87117013 | Msa0481300:intron | 35.0% | |
| ACTATGTAATACAGAGTGAG+TGG | + | chr3_3:87117077-87117096 | Msa0481300:intron | 35.0% | |
| TTATGTGATTCAGTGCACTA+TGG | - | chr3_3:87117600-87117619 | None:intergenic | 35.0% | |
| ACTGAATCACATAACCAGTT+TGG | + | chr3_3:87117606-87117625 | Msa0481300:intron | 35.0% | |
| ATCACATAACCAGTTTGGTT+TGG | + | chr3_3:87117611-87117630 | Msa0481300:intron | 35.0% | |
| GAAACAATTGCAGTTTGGTT+CGG | + | chr3_3:87117641-87117660 | Msa0481300:intron | 35.0% | |
| ! | GGCTAGGCTTTTAAATAGTT+TGG | - | chr3_3:87117698-87117717 | None:intergenic | 35.0% |
| AACATCCTATACCTCAACAA+TGG | - | chr3_3:87117743-87117762 | None:intergenic | 35.0% | |
| GCAAATAGCAACATCATACA+TGG | - | chr3_3:87117775-87117794 | None:intergenic | 35.0% | |
| !! | ATGTTGCTATTTGCAAACTG+TGG | + | chr3_3:87117781-87117800 | Msa0481300:intron | 35.0% |
| GGAATGCATGAAAAATCAGA+TGG | - | chr3_3:87117838-87117857 | None:intergenic | 35.0% | |
| ATTTCAACAAGAACGTGGAT+TGG | - | chr3_3:87117883-87117902 | None:intergenic | 35.0% | |
| TTTGACTCTGTGCTCATTAA+CGG | + | chr3_3:87117928-87117947 | Msa0481300:intron | 35.0% | |
| TGAAAACGAGACTACAATTC+CGG | + | chr3_3:87117979-87117998 | Msa0481300:CDS | 35.0% | |
| !!! | TTGTTTTTGTGCGATTTGTG+AGG | + | chr3_3:87118384-87118403 | Msa0481300:intron | 35.0% |
| ! | GAATAGTAGCTTCCTTTTCT+TGG | + | chr3_3:87118581-87118600 | Msa0481300:intron | 35.0% |
| CAGTAAGATTGTGATGAGAT+GGG | - | chr3_3:87118702-87118721 | None:intergenic | 35.0% | |
| TCAGTAAGATTGTGATGAGA+TGG | - | chr3_3:87118703-87118722 | None:intergenic | 35.0% | |
| AACCAAGCATGTGAAGAATA+GGG | - | chr3_3:87118897-87118916 | None:intergenic | 35.0% | |
| AAACCAAGCATGTGAAGAAT+AGG | - | chr3_3:87118898-87118917 | None:intergenic | 35.0% | |
| ACTATTCCATTTCTAACCGT+AGG | + | chr3_3:87119042-87119061 | Msa0481300:intron | 35.0% | |
| CTATTCCATTTCTAACCGTA+GGG | + | chr3_3:87119043-87119062 | Msa0481300:intron | 35.0% | |
| ! | TCATCTCACTGTAGCTTTTA+TGG | + | chr3_3:87119271-87119290 | Msa0481300:intron | 35.0% |
| ! | CATCTCACTGTAGCTTTTAT+GGG | + | chr3_3:87119272-87119291 | Msa0481300:intron | 35.0% |
| ! | ATCTCACTGTAGCTTTTATG+GGG | + | chr3_3:87119273-87119292 | Msa0481300:intron | 35.0% |
| GAGATTATCCCTTTCATTCT+AGG | + | chr3_3:87119349-87119368 | Msa0481300:intron | 35.0% | |
| ACTGTCATCCTAGAATGAAA+GGG | - | chr3_3:87119360-87119379 | None:intergenic | 35.0% | |
| AAGTGCAGTGATTACTGAAT+AGG | + | chr3_3:87119433-87119452 | Msa0481300:intron | 35.0% | |
| TAATGTTCTTCCACTCAGAA+AGG | - | chr3_3:87119474-87119493 | None:intergenic | 35.0% | |
| TTATGGCTAGATCAATCTCT+TGG | - | chr3_3:87119520-87119539 | None:intergenic | 35.0% | |
| GTTGTCGAAAAGTTATTTGC+GGG | + | chr3_3:87119630-87119649 | Msa0481300:intron | 35.0% | |
| TTGTCGAAAAGTTATTTGCG+GGG | + | chr3_3:87119631-87119650 | Msa0481300:intron | 35.0% | |
| GCGGGGTAAAAATTAAATGA+TGG | + | chr3_3:87119648-87119667 | Msa0481300:intron | 35.0% | |
| AATGTTTATTCCTTTCGGGA+AGG | + | chr3_3:87120066-87120085 | Msa0481300:three_prime_UTR | 35.0% | |
| ! | AATTACGTACGTGAGTTGAG+AGG | - | chr3_3:87115324-87115343 | None:intergenic | 40.0% |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | + | chr3_3:87115806-87115825 | Msa0481300:intron | 40.0% |
| TGTAGCGCTAAGTGTATGTT+TGG | - | chr3_3:87116085-87116104 | None:intergenic | 40.0% | |
| CGCTACATACATACCTTGTA+GGG | + | chr3_3:87116098-87116117 | Msa0481300:intron | 40.0% | |
| CGAAACTAGATAACCCTACA+AGG | - | chr3_3:87116114-87116133 | None:intergenic | 40.0% | |
| TGACATTGATCTTGTAGGGA+AGG | + | chr3_3:87116199-87116218 | Msa0481300:intron | 40.0% | |
| GACATTGATCTTGTAGGGAA+GGG | + | chr3_3:87116200-87116219 | Msa0481300:intron | 40.0% | |
| TACTACAGCTGCATCTAAGT+TGG | + | chr3_3:87116248-87116267 | Msa0481300:CDS | 40.0% | |
| ! | GCATCTAAGTTGGAGAAGAT+AGG | + | chr3_3:87116258-87116277 | Msa0481300:CDS | 40.0% |
| CACAATAGAAGGTTCACTGT+TGG | - | chr3_3:87116780-87116799 | None:intergenic | 40.0% | |
| CACCTAGATTTATCACCTCA+TGG | + | chr3_3:87116857-87116876 | Msa0481300:intron | 40.0% | |
| CACCATGAGGTGATAAATCT+AGG | - | chr3_3:87116862-87116881 | None:intergenic | 40.0% | |
| GGCCGATACTATTCACTTAA+TGG | + | chr3_3:87116993-87117012 | Msa0481300:intron | 40.0% | |
| GTTTCAATGCTGAACCAAAC+TGG | - | chr3_3:87117578-87117597 | None:intergenic | 40.0% | |
| !! | TAACCAGTTTGGTTTGGTTC+AGG | + | chr3_3:87117617-87117636 | Msa0481300:intron | 40.0% |
| CAGGTGAAACAATTGCAGTT+TGG | + | chr3_3:87117636-87117655 | Msa0481300:intron | 40.0% | |
| !!! | TTTGGTTCGGTTTTCTCTTG+TGG | + | chr3_3:87117654-87117673 | Msa0481300:intron | 40.0% |
| ! | TTCGGTTTTCTCTTGTGGTT+CGG | + | chr3_3:87117659-87117678 | Msa0481300:intron | 40.0% |
| !! | TTAACGGATTGTGCTTCTTC+TGG | + | chr3_3:87117944-87117963 | Msa0481300:intron | 40.0% |
| CTTAACACCCACAAAAGTCA+CGG | + | chr3_3:87118278-87118297 | Msa0481300:intron | 40.0% | |
| ! | TTGTTATTCGCATGCTTGCA+TGG | + | chr3_3:87118545-87118564 | Msa0481300:intron | 40.0% |
| TGTTATTCGCATGCTTGCAT+GGG | + | chr3_3:87118546-87118565 | Msa0481300:intron | 40.0% | |
| CTCGAAGTAATGCCAAGAAA+AGG | - | chr3_3:87118596-87118615 | None:intergenic | 40.0% | |
| GACGTGATTTACCACTTGTA+TGG | - | chr3_3:87118636-87118655 | None:intergenic | 40.0% | |
| GATTGTGATGAGATGGGAAA+AGG | - | chr3_3:87118696-87118715 | None:intergenic | 40.0% | |
| AACCTCTATTCTTCATGTGC+AGG | + | chr3_3:87118935-87118954 | Msa0481300:intron | 40.0% | |
| GAATACTCAAAGAAGCCCTA+TGG | - | chr3_3:87119003-87119022 | None:intergenic | 40.0% | |
| GAATACTCAAAGAAGCCCTA+CGG | - | chr3_3:87119003-87119022 | None:intergenic | 40.0% | |
| ACTAGTAACCAATGAGGAGT+CGG | - | chr3_3:87119083-87119102 | None:intergenic | 40.0% | |
| CAAGTCTTGAGCTAATACAC+AGG | - | chr3_3:87119123-87119142 | None:intergenic | 40.0% | |
| TGAGATGACACACAGCAATA+AGG | - | chr3_3:87119259-87119278 | None:intergenic | 40.0% | |
| CACTGTCATCCTAGAATGAA+AGG | - | chr3_3:87119361-87119380 | None:intergenic | 40.0% | |
| TTCTCAGTTTCTGCTGTTGA+AGG | - | chr3_3:87119934-87119953 | None:intergenic | 40.0% | |
| TCAACAGCAGAAACTGAGAA+AGG | + | chr3_3:87119934-87119953 | Msa0481300:CDS | 40.0% | |
| TCAAGTATGGGATCAACAGT+AGG | - | chr3_3:87119994-87120013 | None:intergenic | 40.0% | |
| GTTGATCCCATACTTGATCA+AGG | + | chr3_3:87119997-87120016 | Msa0481300:CDS | 40.0% | |
| GAAGCATATTCCGGTCATGT+CGG | - | chr3_3:87115168-87115187 | None:intergenic | 45.0% | |
| AAGCGAAGTAATCGAAGACG+AGG | - | chr3_3:87115232-87115251 | None:intergenic | 45.0% | |
| GTGGATGATGAGAACGCATT+CGG | - | chr3_3:87115295-87115314 | None:intergenic | 45.0% | |
| AATGTCGATGTGTCAGTGTC+CGG | - | chr3_3:87115663-87115682 | None:intergenic | 45.0% | |
| AAATATTAGTGTCGTGGCGG+TGG | + | chr3_3:87115715-87115734 | Msa0481300:intron | 45.0% | |
| GCGCTACATACATACCTTGT+AGG | + | chr3_3:87116097-87116116 | Msa0481300:intron | 45.0% | |
| ACGATGTGATGGTTAGCACT+TGG | + | chr3_3:87116972-87116991 | Msa0481300:intron | 45.0% | |
| !! | GAGTGAGTGGCCTTAGTTTT+TGG | + | chr3_3:87117090-87117109 | Msa0481300:intron | 45.0% |
| ! | GATTAAGGGCCCGTTTGTTA+AGG | - | chr3_3:87117546-87117565 | None:intergenic | 45.0% |
| TCACCTGAACCAAACCAAAC+TGG | - | chr3_3:87117623-87117642 | None:intergenic | 45.0% | |
| ! | TCGGTTTTCTCTTGTGGTTC+GGG | + | chr3_3:87117660-87117679 | Msa0481300:intron | 45.0% |
| AAAAGGGAGGAAAGCTACAG+AGG | - | chr3_3:87117719-87117738 | None:intergenic | 45.0% | |
| CCTCAACAATGGAAAAAGGG+AGG | - | chr3_3:87117732-87117751 | None:intergenic | 45.0% | |
| ! | CCTCCCTTTTTCCATTGTTG+AGG | + | chr3_3:87117729-87117748 | Msa0481300:intron | 45.0% |
| TTTGCAAACTGTGGCAAGCA+AGG | + | chr3_3:87117790-87117809 | Msa0481300:intron | 45.0% | |
| !! | CAACAAGAACGTGGATTGGA+AGG | - | chr3_3:87117879-87117898 | None:intergenic | 45.0% |
| GACTACAATTCCGGAACCAA+AGG | + | chr3_3:87117988-87118007 | Msa0481300:CDS | 45.0% | |
| TACAATTCCGGAACCAAAGG+CGG | + | chr3_3:87117991-87118010 | Msa0481300:CDS | 45.0% | |
| ! | GAAATCGCCGTGACTTTTGT+GGG | - | chr3_3:87118288-87118307 | None:intergenic | 45.0% |
| ! | AGAAATCGCCGTGACTTTTG+TGG | - | chr3_3:87118289-87118308 | None:intergenic | 45.0% |
| GTTATTCGCATGCTTGCATG+GGG | + | chr3_3:87118547-87118566 | Msa0481300:intron | 45.0% | |
| ! | TACTTCGAGTTTCCCTGTTG+TGG | + | chr3_3:87118607-87118626 | Msa0481300:intron | 45.0% |
| GAACATGAGAGGCTGACTAA+GGG | - | chr3_3:87118795-87118814 | None:intergenic | 45.0% | |
| TGAACATGAGAGGCTGACTA+AGG | - | chr3_3:87118796-87118815 | None:intergenic | 45.0% | |
| ATGTTATGCCCGGAACAATG+CGG | - | chr3_3:87118856-87118875 | None:intergenic | 45.0% | |
| CACCCTATTCTTCACATGCT+TGG | + | chr3_3:87118892-87118911 | Msa0481300:intron | 45.0% | |
| GACCTGCACATGAAGAATAG+AGG | - | chr3_3:87118940-87118959 | None:intergenic | 45.0% | |
| AGAAGCCCTACGGTTAGAAA+TGG | - | chr3_3:87119051-87119070 | None:intergenic | 45.0% | |
| TGAGTATTCCGACTCCTCAT+TGG | + | chr3_3:87119072-87119091 | Msa0481300:intron | 45.0% | |
| CCACTCAGAAAGGAAGGATT+AGG | - | chr3_3:87119464-87119483 | None:intergenic | 45.0% | |
| CCTAATCCTTCCTTTCTGAG+TGG | + | chr3_3:87119461-87119480 | Msa0481300:intron | 45.0% | |
| GTTCTTCCACTCAGAAAGGA+AGG | - | chr3_3:87119470-87119489 | None:intergenic | 45.0% | |
| AATCTCTTGGCCCTGTGAAA+AGG | - | chr3_3:87119507-87119526 | None:intergenic | 45.0% | |
| TTAGGAGGACAAGCTGTGTT+GGG | - | chr3_3:87119707-87119726 | None:intergenic | 45.0% | |
| CAGCTTGTCCTCCTAACTAT+AGG | + | chr3_3:87119711-87119730 | Msa0481300:intron | 45.0% | |
| ! | ACATACCCTTCTGGAAATGG+TGG | - | chr3_3:87119907-87119926 | None:intergenic | 45.0% |
| ! | GGAACATACCCTTCTGGAAA+TGG | - | chr3_3:87119910-87119929 | None:intergenic | 45.0% |
| TCAGTTTCTGCTGTTGAAGG+TGG | - | chr3_3:87119931-87119950 | None:intergenic | 45.0% | |
| GCAGGACCTTGATCAAGTAT+GGG | - | chr3_3:87120006-87120025 | None:intergenic | 45.0% | |
| TGCAGGACCTTGATCAAGTA+TGG | - | chr3_3:87120007-87120026 | None:intergenic | 45.0% | |
| !!! | AAAATTTTAATAAAAAAGAA+AGG | + | chr3_3:87118151-87118170 | Msa0481300:intron | 5.0% |
| !!! | AAATTTTAATAAAAAAGAAA+GGG | + | chr3_3:87118152-87118171 | Msa0481300:intron | 5.0% |
| ! | TCACAGCACTGAGAGAGAAC+CGG | + | chr3_3:87115073-87115092 | Msa0481300:five_prime_UTR | 50.0% |
| CCGTCTAACATTCCCATTCC+CGG | - | chr3_3:87115116-87115135 | None:intergenic | 50.0% | |
| CCGGGAATGGGAATGTTAGA+CGG | + | chr3_3:87115113-87115132 | Msa0481300:CDS | 50.0% | |
| GGAATGGGAATGTTAGACGG+CGG | + | chr3_3:87115116-87115135 | Msa0481300:CDS | 50.0% | |
| AGACGAGGTTACGATCGAGT+GGG | - | chr3_3:87115217-87115236 | None:intergenic | 50.0% | |
| AAGACGAGGTTACGATCGAG+TGG | - | chr3_3:87115218-87115237 | None:intergenic | 50.0% | |
| ! | GTGAGTTGAGAGGAATCGAG+TGG | - | chr3_3:87115314-87115333 | None:intergenic | 50.0% |
| GTCAGTGTCCGGTCTACATA+AGG | - | chr3_3:87115652-87115671 | None:intergenic | 50.0% | |
| TTGCGCTTGCGTTGCAATTG+TGG | + | chr3_3:87116420-87116439 | Msa0481300:intron | 50.0% | |
| AAGGTCCACAGCCACACTAT+GGG | - | chr3_3:87116473-87116492 | None:intergenic | 50.0% | |
| AAAGGTCCACAGCCACACTA+TGG | - | chr3_3:87116474-87116493 | None:intergenic | 50.0% | |
| ATTGTCTCCTTAGCCGCCTT+TGG | - | chr3_3:87118007-87118026 | None:intergenic | 50.0% | |
| TCTTGCTTCCTTGCAACGCA+AGG | + | chr3_3:87118060-87118079 | Msa0481300:CDS | 50.0% | |
| TCAACTCACCTTGCGTTGCA+AGG | - | chr3_3:87118071-87118090 | None:intergenic | 50.0% | |
| CTTGTATGGCAGCCACAACA+GGG | - | chr3_3:87118622-87118641 | None:intergenic | 50.0% | |
| ACTTGTATGGCAGCCACAAC+AGG | - | chr3_3:87118623-87118642 | None:intergenic | 50.0% | |
| TGTTGTGGCTGCCATACAAG+TGG | + | chr3_3:87118622-87118641 | Msa0481300:intron | 50.0% | |
| TTTCGCAGCTGCAACTTCGA+GGG | + | chr3_3:87118656-87118675 | Msa0481300:intron | 50.0% | |
| CAGTGTGCTCGGGGAAAAAA+GGG | - | chr3_3:87118829-87118848 | None:intergenic | 50.0% | |
| ACAGTGTGCTCGGGGAAAAA+AGG | - | chr3_3:87118830-87118849 | None:intergenic | 50.0% | |
| AATGCGGTGAACAGTGTGCT+CGG | - | chr3_3:87118840-87118859 | None:intergenic | 50.0% | |
| CACTGTTCACCGCATTGTTC+CGG | + | chr3_3:87118844-87118863 | Msa0481300:intron | 50.0% | |
| ACTGTTCACCGCATTGTTCC+GGG | + | chr3_3:87118845-87118864 | Msa0481300:intron | 50.0% | |
| GCTGTGTTGGGTAAAACCTC+TGG | - | chr3_3:87119695-87119714 | None:intergenic | 50.0% | |
| GTTAGGAGGACAAGCTGTGT+TGG | - | chr3_3:87119708-87119727 | None:intergenic | 50.0% | |
| ! | TACCCTTCTGGAAATGGTGG+CGG | - | chr3_3:87119904-87119923 | None:intergenic | 50.0% |
| GAAGGTGGAACATACCCTTC+TGG | - | chr3_3:87119916-87119935 | None:intergenic | 50.0% | |
| TGAGAAAGGCCCTGAAACTC+AGG | + | chr3_3:87119948-87119967 | Msa0481300:CDS | 50.0% | |
| CAGCTGCTTCCTGAGTTTCA+GGG | - | chr3_3:87119960-87119979 | None:intergenic | 50.0% | |
| TCAGCTGCTTCCTGAGTTTC+AGG | - | chr3_3:87119961-87119980 | None:intergenic | 50.0% | |
| !! | ATTCCGGTCATGTCGGTTCC+CGG | - | chr3_3:87115161-87115180 | None:intergenic | 55.0% |
| GATGTCAACGGCCCATAGTG+TGG | + | chr3_3:87116459-87116478 | Msa0481300:intron | 55.0% | |
| GGAGGAAAGCTACAGAGGCT+AGG | - | chr3_3:87117714-87117733 | None:intergenic | 55.0% | |
| ! | TCCTTAGCCGCCTTTGGTTC+CGG | - | chr3_3:87118001-87118020 | None:intergenic | 55.0% |
| CTTTCGCAGCTGCAACTTCG+AGG | + | chr3_3:87118655-87118674 | Msa0481300:intron | 55.0% | |
| ! | CTCTGGGGGTTGAACATGAG+AGG | - | chr3_3:87118806-87118825 | None:intergenic | 55.0% |
| TCGGGGAAAAAAGGGCTCTG+GGG | - | chr3_3:87118821-87118840 | None:intergenic | 55.0% | |
| CTCGGGGAAAAAAGGGCTCT+GGG | - | chr3_3:87118822-87118841 | None:intergenic | 55.0% | |
| ATGCGGTGAACAGTGTGCTC+GGG | - | chr3_3:87118839-87118858 | None:intergenic | 55.0% | |
| CTCCGCCACCATTTCCAGAA+GGG | + | chr3_3:87119899-87119918 | Msa0481300:CDS | 55.0% | |
| GTCCACTGCACTTCGCTACA+CGG | + | chr3_3:87120273-87120292 | Msa0481300:three_prime_UTR | 55.0% | |
| CACTGAGAGAGAACCGGTGC+CGG | + | chr3_3:87115079-87115098 | Msa0481300:five_prime_UTR | 60.0% | |
| !! | ATTCCCGGTGTCGCCATCTC+CGG | - | chr3_3:87115101-87115120 | None:intergenic | 60.0% |
| GAGATGGCGACACCGGGAAT+GGG | + | chr3_3:87115101-87115120 | Msa0481300:exon | 60.0% | |
| !! | GTTAGACGGCGGAGTACCGA+CGG | + | chr3_3:87115127-87115146 | Msa0481300:CDS | 60.0% |
| AACGGCCCATAGTGTGGCTG+TGG | + | chr3_3:87116465-87116484 | Msa0481300:intron | 60.0% | |
| GTCGCAGCTCACCGAAGTCT+AGG | - | chr3_3:87116758-87116777 | None:intergenic | 60.0% | |
| TCCGGAACCAAAGGCGGCTA+AGG | + | chr3_3:87117997-87118016 | Msa0481300:CDS | 60.0% | |
| ! | CGGGGAAAAAAGGGCTCTGG+GGG | - | chr3_3:87118820-87118839 | None:intergenic | 60.0% |
| GCTCGGGGAAAAAAGGGCTC+TGG | - | chr3_3:87118823-87118842 | None:intergenic | 60.0% | |
| TGCGGTGAACAGTGTGCTCG+GGG | - | chr3_3:87118838-87118857 | None:intergenic | 60.0% | |
| CAGGTGCGGCATGTTATGCC+CGG | - | chr3_3:87118866-87118885 | None:intergenic | 60.0% | |
| GAAGAATAGGGTGCGCGTGC+AGG | - | chr3_3:87118885-87118904 | None:intergenic | 60.0% | |
| !! | TCTGGAAATGGTGGCGGAGG+CGG | - | chr3_3:87119898-87119917 | None:intergenic | 60.0% |
| !! | CCTTCTGGAAATGGTGGCGG+AGG | - | chr3_3:87119901-87119920 | None:intergenic | 60.0% |
| CCTCCGCCACCATTTCCAGA+AGG | + | chr3_3:87119898-87119917 | Msa0481300:CDS | 60.0% | |
| TTCGGGTACGCCTTCCCGAA+AGG | - | chr3_3:87120079-87120098 | None:intergenic | 60.0% | |
| ! | GGGAAGGCGTACCCGAAAGA+TGG | + | chr3_3:87120082-87120101 | Msa0481300:three_prime_UTR | 60.0% |
| GTCCGTGTAGCGAAGTGCAG+TGG | - | chr3_3:87120278-87120297 | None:intergenic | 60.0% | |
| ! | GAGAGAACCGGTGCCGGAGA+TGG | + | chr3_3:87115085-87115104 | Msa0481300:exon | 65.0% |
| GGAGATGGCGACACCGGGAA+TGG | + | chr3_3:87115100-87115119 | Msa0481300:exon | 65.0% | |
| !! | AGTACCGACGGCGCAACCAC+CGG | + | chr3_3:87115139-87115158 | Msa0481300:CDS | 65.0% |
| CCACCGGGAACCGACATGAC+CGG | + | chr3_3:87115155-87115174 | Msa0481300:CDS | 65.0% | |
| ATAGGGTGCGCGTGCAGGTG+CGG | - | chr3_3:87118880-87118899 | None:intergenic | 65.0% | |
| ! | GGTGTCGCCATCTCCGGCAC+CGG | - | chr3_3:87115095-87115114 | None:intergenic | 70.0% |
| ! | GGTGCCGGAGATGGCGACAC+CGG | + | chr3_3:87115094-87115113 | Msa0481300:exon | 70.0% |
| GTGCCGGAGATGGCGACACC+GGG | + | chr3_3:87115095-87115114 | Msa0481300:exon | 70.0% | |
| ! | GTACCGACGGCGCAACCACC+GGG | + | chr3_3:87115140-87115159 | Msa0481300:CDS | 70.0% |
| GTTCCCGGTGGTTGCGCCGT+CGG | - | chr3_3:87115146-87115165 | None:intergenic | 70.0% | |
| !! | CCGGTCATGTCGGTTCCCGG+TGG | - | chr3_3:87115158-87115177 | None:intergenic | 70.0% |
| !! | AATGGTGGCGGAGGCGGAGC+AGG | - | chr3_3:87119892-87119911 | None:intergenic | 70.0% |
| !!! | GGTGGCGGAGGCGGAGCAGG+TGG | - | chr3_3:87119889-87119908 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 87115024 | 87120302 | 87115024 | ID=Msa0481300;Name=Msa0481300 |
| chr3_3 | mRNA | 87115024 | 87120302 | 87115024 | ID=Msa0481300-mRNA-1;Parent=Msa0481300;Name=Msa0481300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=80|1|1|1|1|1|5|258|248 |
| chr3_3 | exon | 87115024 | 87115333 | 87115024 | ID=Msa0481300-mRNA-1:exon:25266;Parent=Msa0481300-mRNA-1 |
| chr3_3 | exon | 87115423 | 87115597 | 87115423 | ID=Msa0481300-mRNA-1:exon:25267;Parent=Msa0481300-mRNA-1 |
| chr3_3 | exon | 87116216 | 87116285 | 87116216 | ID=Msa0481300-mRNA-1:exon:25268;Parent=Msa0481300-mRNA-1 |
| chr3_3 | exon | 87117972 | 87118081 | 87117972 | ID=Msa0481300-mRNA-1:exon:25269;Parent=Msa0481300-mRNA-1 |
| chr3_3 | exon | 87119883 | 87120302 | 87119883 | ID=Msa0481300-mRNA-1:exon:25270;Parent=Msa0481300-mRNA-1 |
| chr3_3 | five_prime_UTR | 87115024 | 87115103 | 87115024 | ID=Msa0481300-mRNA-1:five_prime_utr;Parent=Msa0481300-mRNA-1 |
| chr3_3 | CDS | 87115104 | 87115333 | 87115104 | ID=Msa0481300-mRNA-1:cds;Parent=Msa0481300-mRNA-1 |
| chr3_3 | CDS | 87115423 | 87115597 | 87115423 | ID=Msa0481300-mRNA-1:cds;Parent=Msa0481300-mRNA-1 |
| chr3_3 | CDS | 87116216 | 87116285 | 87116216 | ID=Msa0481300-mRNA-1:cds;Parent=Msa0481300-mRNA-1 |
| chr3_3 | CDS | 87117972 | 87118081 | 87117972 | ID=Msa0481300-mRNA-1:cds;Parent=Msa0481300-mRNA-1 |
| chr3_3 | CDS | 87119883 | 87120044 | 87119883 | ID=Msa0481300-mRNA-1:cds;Parent=Msa0481300-mRNA-1 |
| chr3_3 | three_prime_UTR | 87120045 | 87120302 | 87120045 | ID=Msa0481300-mRNA-1:three_prime_utr;Parent=Msa0481300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
