Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481780 | XP_013450128.1 | 90.947 | 243 | 3 | 1 | 1 | 224 | 1 | 243 | 1.22e-157 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481780 | sp|Q9SJF3|DCP1_ARATH | 60.648 | 216 | 58 | 5 | 1 | 194 | 1 | 211 | 5.17e-80 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481780 | A0A072U465 | 90.947 | 243 | 3 | 1 | 1 | 224 | 1 | 243 | 5.85e-158 | 451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0440130 | Msa0481780 | 0.801466 | 8.887870e-49 | -8.615850e-47 |
| Msa0481780 | Msa1125920 | 0.843007 | 1.825159e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481780 | MtrunA17_Chr7g0266741 | 90.947 | 243 | 3 | 1 | 1 | 224 | 1 | 243 | 3.65e-161 | 448 |
| Msa0481780 | MtrunA17_Chr2g0321701 | 53.506 | 271 | 87 | 8 | 1 | 233 | 1 | 270 | 4.37e-86 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481780 | AT1G08370.1 | 60.648 | 216 | 58 | 5 | 1 | 194 | 1 | 211 | 5.26e-81 | 247 |
Find 76 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGATAGCGCTTTCATTTA+TGG | 0.005436 | 3_3:+88161161 | None:intergenic |
| TCTATATAATATTTGGATTT+TGG | 0.118443 | 3_3:-88159184 | Msa0481780:three_prime_UTR |
| GCAACTTCTTCACATTCTTC+TGG | 0.263869 | 3_3:+88162166 | None:intergenic |
| TTCAACATTTGTATCTTAAG+AGG | 0.279763 | 3_3:-88158932 | Msa0481780:three_prime_UTR |
| TCACAACTTTGCATATCTTT+TGG | 0.285584 | 3_3:-88159567 | Msa0481780:three_prime_UTR |
| TTTGAACAACTCTCATGTTT+AGG | 0.299526 | 3_3:-88159058 | Msa0481780:three_prime_UTR |
| CACAAGAAGTTAATGGTATA+TGG | 0.308647 | 3_3:-88162198 | Msa0481780:CDS |
| GTAGAAGGTGTTTGAATAGA+AGG | 0.309767 | 3_3:+88160827 | None:intergenic |
| TAATCTGGTGGAGAATCTTT+TGG | 0.319672 | 3_3:-88162269 | Msa0481780:CDS |
| AAGTTGCAAATCTCTTTAAT+AGG | 0.325477 | 3_3:-88162150 | Msa0481780:intron |
| TAAGAAATTAACGCCGAATC+TGG | 0.328751 | 3_3:-88163326 | Msa0481780:CDS |
| GATATGTCGTGCAAGAGTTT+TGG | 0.329193 | 3_3:-88159125 | Msa0481780:three_prime_UTR |
| TTGCAGACATGTAAGATTAC+TGG | 0.329440 | 3_3:-88160941 | Msa0481780:intron |
| TATGCATCTTCAATAATGTT+TGG | 0.333689 | 3_3:+88159758 | None:intergenic |
| TTGACGGTGTATTGCGGAAT+CGG | 0.335807 | 3_3:+88159544 | None:intergenic |
| TTCGATGTTGAAATCATAGA+AGG | 0.353357 | 3_3:+88163213 | None:intergenic |
| TACAAATGTTGAATTGATCT+TGG | 0.354155 | 3_3:+88158942 | None:intergenic |
| TATAAACTTAGTTCTGTATA+TGG | 0.363402 | 3_3:-88159693 | Msa0481780:three_prime_UTR |
| TATCCTCTGTAGTGAGTTTG+AGG | 0.369066 | 3_3:-88161202 | Msa0481780:intron |
| GATCTCTGTTTGTTGTTAAG+AGG | 0.370124 | 3_3:-88163159 | Msa0481780:intron |
| AAAAGCCATACTTGTTATAT+CGG | 0.374988 | 3_3:-88162228 | Msa0481780:CDS |
| GCATTCCGATATAACAAGTA+TGG | 0.382162 | 3_3:+88162223 | None:intergenic |
| CTTTCTACATTTGAAGCATA+AGG | 0.385566 | 3_3:+88160917 | None:intergenic |
| AGTGTCACTTCTACTGTTCC+TGG | 0.391693 | 3_3:-88160869 | Msa0481780:CDS |
| TTCACCAAATGAATCGAGTT+AGG | 0.397814 | 3_3:-88163487 | Msa0481780:five_prime_UTR |
| AATGCGTCACAAGAAGTTAA+TGG | 0.399188 | 3_3:-88162205 | Msa0481780:CDS |
| AGAAAGTTGTCAGAAGTAGT+TGG | 0.405905 | 3_3:-88158979 | Msa0481780:three_prime_UTR |
| GTTTATTATGACAGATAATC+TGG | 0.406670 | 3_3:-88162284 | Msa0481780:intron |
| AAAACCTAACTCGATTCATT+TGG | 0.407061 | 3_3:+88163483 | None:intergenic |
| TTCAGTTTATTGTGATGAAT+CGG | 0.436878 | 3_3:-88163038 | Msa0481780:CDS |
| TGCAACAAGTCTTAAGAACT+TGG | 0.438501 | 3_3:-88158867 | Msa0481780:three_prime_UTR |
| GTGATGAATCGGCGAAATAC+AGG | 0.457248 | 3_3:-88163027 | Msa0481780:intron |
| GGTGTTTGAATAGAAGGTAC+AGG | 0.486251 | 3_3:+88160833 | None:intergenic |
| TAGAAGTGAAGTACTTCAAA+CGG | 0.489362 | 3_3:+88159336 | None:intergenic |
| ATTGTTTCGAGAGAGGTAGA+AGG | 0.499455 | 3_3:+88160812 | None:intergenic |
| ATTAATGCACTATAATTTGA+CGG | 0.505767 | 3_3:+88159528 | None:intergenic |
| GTGCTGTGTTGATCCAGATT+CGG | 0.508965 | 3_3:+88163313 | None:intergenic |
| AGTAATCGAACATCAAAGGT+TGG | 0.509059 | 3_3:-88159728 | Msa0481780:three_prime_UTR |
| TCAAAGGTGTTGTTCAAAAG+TGG | 0.512779 | 3_3:+88159076 | None:intergenic |
| TCAACATTTGTATCTTAAGA+GGG | 0.521860 | 3_3:-88158931 | Msa0481780:three_prime_UTR |
| AAGAGAATCTCATCGATGAA+TGG | 0.522363 | 3_3:+88163253 | None:intergenic |
| GTAATCGAACATCAAAGGTT+GGG | 0.522743 | 3_3:-88159727 | Msa0481780:three_prime_UTR |
| AGTGACACTTGCAGAATGGT+AGG | 0.526966 | 3_3:+88160883 | None:intergenic |
| TATGTATACGTGGATAGTAA+TGG | 0.529487 | 3_3:-88159477 | Msa0481780:three_prime_UTR |
| AAGATATGCAAAGTTGTGAC+AGG | 0.531065 | 3_3:+88159571 | None:intergenic |
| TGCACGACATATCCTTTGCA+TGG | 0.535756 | 3_3:+88159135 | None:intergenic |
| ACTTGACTCGAGAGAAGAAG+AGG | 0.539005 | 3_3:+88163395 | None:intergenic |
| CATACATAAATTCAAAGGTA+AGG | 0.541492 | 3_3:+88159496 | None:intergenic |
| CGATGAATGGATCCATGCGT+TGG | 0.548724 | 3_3:+88163266 | None:intergenic |
| TGGAGTCGCAAAGATGTTGA+AGG | 0.549697 | 3_3:-88163181 | Msa0481780:CDS |
| CACTTGCAGAATGGTAGGGC+TGG | 0.552392 | 3_3:+88160888 | None:intergenic |
| CATGAGTAATCGAACATCAA+AGG | 0.562148 | 3_3:-88159732 | Msa0481780:exon |
| TCTCACTGTGCTCCAACGCA+TGG | 0.564162 | 3_3:-88163278 | Msa0481780:CDS |
| AACAATCAACAGTGGCACTC+AGG | 0.575651 | 3_3:-88160795 | Msa0481780:intron |
| TTTCATTTATGGTTGACACT+TGG | 0.575948 | 3_3:+88161172 | None:intergenic |
| TCTTCAGGAATGCTCAACCT+CGG | 0.578448 | 3_3:-88163062 | Msa0481780:intron |
| GTCACTTCTACTGTTCCTGG+TGG | 0.580303 | 3_3:-88160866 | Msa0481780:CDS |
| TAAACATGAGAGTTGTTCAA+AGG | 0.590886 | 3_3:+88159060 | None:intergenic |
| TATAATTTGACGGTGTATTG+CGG | 0.591079 | 3_3:+88159538 | None:intergenic |
| ACTGTTGATTGTTTCGAGAG+AGG | 0.591093 | 3_3:+88160805 | None:intergenic |
| TAGAAGTGACACTTGCAGAA+TGG | 0.593469 | 3_3:+88160879 | None:intergenic |
| GTATACATACATAAATTCAA+AGG | 0.595488 | 3_3:+88159491 | None:intergenic |
| AGTCATAGGCATCCATGCAA+AGG | 0.607934 | 3_3:-88159147 | Msa0481780:three_prime_UTR |
| GTGACACTTGCAGAATGGTA+GGG | 0.619158 | 3_3:+88160884 | None:intergenic |
| AAGTTACACAAAACATGCCA+TGG | 0.619895 | 3_3:+88159642 | None:intergenic |
| GCAACAAGTCTTAAGAACTT+GGG | 0.620998 | 3_3:-88158866 | Msa0481780:three_prime_UTR |
| GATAGTAATGGAAGAAAACA+AGG | 0.622478 | 3_3:-88159465 | Msa0481780:three_prime_UTR |
| ATCACAATAAACTGAAACCG+AGG | 0.625725 | 3_3:+88163045 | None:intergenic |
| CATGGTCGAGTCAGATGTGT+TGG | 0.626123 | 3_3:+88159660 | None:intergenic |
| CAACACATCTGACTCGACCA+TGG | 0.636208 | 3_3:-88159659 | Msa0481780:three_prime_UTR |
| TGAATTTATGTATGTATACG+TGG | 0.643336 | 3_3:-88159487 | Msa0481780:three_prime_UTR |
| ATCATAGAAGGAAACATGTG+CGG | 0.658586 | 3_3:+88163225 | None:intergenic |
| TATTATGACAGATAATCTGG+TGG | 0.659213 | 3_3:-88162281 | Msa0481780:intron |
| TCAACATCGAAACTAATCAG+TGG | 0.683579 | 3_3:-88163201 | Msa0481780:CDS |
| ATAGAAGGAAACATGTGCGG+CGG | 0.692025 | 3_3:+88163228 | None:intergenic |
| TCTCTCGAAACAATCAACAG+TGG | 0.738817 | 3_3:-88160803 | Msa0481780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTAAATAATTTTAAT+TGG | - | chr3_3:88162956-88162975 | Msa0481780:intron | 0.0% |
| !! | TGGATAATTAAATATATTAA+AGG | + | chr3_3:88161946-88161965 | None:intergenic | 10.0% |
| !! | TATATATATTAGTAGCAAAT+AGG | + | chr3_3:88160549-88160568 | None:intergenic | 15.0% |
| !!! | TGATTCTATTTTGAAATATT+TGG | - | chr3_3:88160716-88160735 | Msa0481780:intron | 15.0% |
| !! | GATAAAAATATTCATTGAAA+AGG | - | chr3_3:88161035-88161054 | Msa0481780:intron | 15.0% |
| !! | TTCTAACAATTAAAGATAAA+TGG | + | chr3_3:88162028-88162047 | None:intergenic | 15.0% |
| !! | CTTTAATTGTTAGAAAAATA+TGG | - | chr3_3:88162033-88162052 | Msa0481780:intron | 15.0% |
| !!! | AGTACTATTTTTAATGTATT+TGG | + | chr3_3:88162188-88162207 | None:intergenic | 15.0% |
| !! | AAATCTTAATATCAATAGTT+TGG | + | chr3_3:88162254-88162273 | None:intergenic | 15.0% |
| !!! | TAGGTTTTCTATATAATATT+TGG | - | chr3_3:88163203-88163222 | Msa0481780:CDS | 15.0% |
| !!! | TCTATATAATATTTGGATTT+TGG | - | chr3_3:88163210-88163229 | Msa0481780:CDS | 15.0% |
| !!! | TACTTCGATTTGTATATAAT+TGG | - | chr3_3:88159284-88159303 | Msa0481780:intron | 20.0% |
| !! | AAACACTATAATTTCAACAA+CGG | + | chr3_3:88159415-88159434 | None:intergenic | 20.0% |
| !!! | TGTTTTTCAGATTTGTTATA+AGG | - | chr3_3:88159430-88159449 | Msa0481780:three_prime_UTR | 20.0% |
| !!! | CAACATTTTATACTACTTAA+TGG | + | chr3_3:88160411-88160430 | None:intergenic | 20.0% |
| !! | TAAGTAGTATAAAATGTTGT+CGG | - | chr3_3:88160412-88160431 | Msa0481780:intron | 20.0% |
| !! | TAAAATCTTAAGTGTAAGTT+TGG | - | chr3_3:88160669-88160688 | Msa0481780:intron | 20.0% |
| !!! | CTTTAGAATCATTAACATAT+AGG | + | chr3_3:88160975-88160994 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTATTCTGTATG+TGG | - | chr3_3:88161000-88161019 | Msa0481780:intron | 20.0% |
| !!! | CTTTTTATAATTTTTGCTGA+TGG | + | chr3_3:88161966-88161985 | None:intergenic | 20.0% |
| !!! | TATAAACTTAGTTCTGTATA+TGG | - | chr3_3:88162701-88162720 | Msa0481780:intron | 20.0% |
| !! | ATTAATGCACTATAATTTGA+CGG | + | chr3_3:88162869-88162888 | None:intergenic | 20.0% |
| !! | GTATACATACATAAATTCAA+AGG | + | chr3_3:88162906-88162925 | None:intergenic | 20.0% |
| !!! | AATATTTGGATTTTGGATTT+TGG | - | chr3_3:88163217-88163236 | Msa0481780:CDS | 20.0% |
| !!! | TTCTTTTTCTCTCTTTTTAT+TGG | + | chr3_3:88163399-88163418 | None:intergenic | 20.0% |
| !! | GTAAAAAAATAAATTGTGAG+TGG | + | chr3_3:88163499-88163518 | None:intergenic | 20.0% |
| ! | TTCAGTTTATTGTGATGAAT+CGG | - | chr3_3:88159356-88159375 | Msa0481780:three_prime_UTR | 25.0% |
| !!! | TTCAGATTTGTTATAAGGAT+CGG | - | chr3_3:88159435-88159454 | Msa0481780:three_prime_UTR | 25.0% |
| ! | TCAACAATAACAAGTTCTTT+AGG | + | chr3_3:88159507-88159526 | None:intergenic | 25.0% |
| !! | GATTGATAATTGAATGAAAG+TGG | - | chr3_3:88159587-88159606 | Msa0481780:three_prime_UTR | 25.0% |
| !!! | CAATGAATTATTTTACTGTG+TGG | - | chr3_3:88159715-88159734 | Msa0481780:three_prime_UTR | 25.0% |
| ! | ACATAGAAAGTAATCAAGTA+GGG | + | chr3_3:88160087-88160106 | None:intergenic | 25.0% |
| ! | GTTTATTATGACAGATAATC+TGG | - | chr3_3:88160110-88160129 | Msa0481780:intron | 25.0% |
| !!! | AAAAGCCATACTTGTTATAT+CGG | - | chr3_3:88160166-88160185 | Msa0481780:intron | 25.0% |
| ! | AAGTTGCAAATCTCTTTAAT+AGG | - | chr3_3:88160244-88160263 | Msa0481780:intron | 25.0% |
| ! | AAGTAGTATAAAATGTTGTC+GGG | - | chr3_3:88160413-88160432 | Msa0481780:intron | 25.0% |
| !!! | TGATTATGTCACATTGATTT+TGG | + | chr3_3:88160909-88160928 | None:intergenic | 25.0% |
| ! | TTATGATTATATGATGTCTC+TGG | - | chr3_3:88161405-88161424 | Msa0481780:intron | 25.0% |
| ! | TATTAATGGTAATAAGGAGT+TGG | + | chr3_3:88161661-88161680 | None:intergenic | 25.0% |
| !!! | ACTAGTTCATTTATTTTGTG+TGG | - | chr3_3:88162091-88162110 | Msa0481780:intron | 25.0% |
| !!! | CTAGTTCATTTATTTTGTGT+GGG | - | chr3_3:88162092-88162111 | Msa0481780:intron | 25.0% |
| !! | TTATTCAGTTACGTTTTTGA+GGG | - | chr3_3:88162127-88162146 | Msa0481780:intron | 25.0% |
| ! | TTCATAAAATCCTTCCTTTA+TGG | + | chr3_3:88162340-88162359 | None:intergenic | 25.0% |
| !! | GAAGGATTTTATGAATTTGA+TGG | - | chr3_3:88162345-88162364 | Msa0481780:intron | 25.0% |
| !!! | TTTTTGTTTTACCATTTGTG+TGG | - | chr3_3:88162520-88162539 | Msa0481780:intron | 25.0% |
| ! | ACAAGAAAATATCGTTATCA+GGG | + | chr3_3:88162585-88162604 | None:intergenic | 25.0% |
| ! | TATGCATCTTCAATAATGTT+TGG | + | chr3_3:88162639-88162658 | None:intergenic | 25.0% |
| ! | CATACATAAATTCAAAGGTA+AGG | + | chr3_3:88162901-88162920 | None:intergenic | 25.0% |
| ! | TGAATTTATGTATGTATACG+TGG | - | chr3_3:88162907-88162926 | Msa0481780:intron | 25.0% |
| ! | ATCATAGAAATTGCCATATA+TGG | - | chr3_3:88163092-88163111 | Msa0481780:intron | 25.0% |
| ! | GAACATTATTCAACCATATA+TGG | + | chr3_3:88163108-88163127 | None:intergenic | 25.0% |
| !!! | ATTTTGGAAAAACTAGTCAT+AGG | - | chr3_3:88163233-88163252 | Msa0481780:CDS | 25.0% |
| ! | TACAAATGTTGAATTGATCT+TGG | + | chr3_3:88163455-88163474 | None:intergenic | 25.0% |
| ! | TTCAACATTTGTATCTTAAG+AGG | - | chr3_3:88163462-88163481 | Msa0481780:five_prime_UTR | 25.0% |
| ! | TCAACATTTGTATCTTAAGA+GGG | - | chr3_3:88163463-88163482 | Msa0481780:five_prime_UTR | 25.0% |
| AAAACCTAACTCGATTCATT+TGG | + | chr3_3:88158914-88158933 | None:intergenic | 30.0% | |
| TTCGATGTTGAAATCATAGA+AGG | + | chr3_3:88159184-88159203 | None:intergenic | 30.0% | |
| ! | TGTTTTATAGCTAGCTATAG+TGG | - | chr3_3:88159821-88159840 | Msa0481780:intron | 30.0% |
| GTTATTTAATACAGCTGTAG+TGG | - | chr3_3:88159964-88159983 | Msa0481780:intron | 30.0% | |
| ! | AGGTTTGTTCTAATTCAGTA+AGG | + | chr3_3:88160006-88160025 | None:intergenic | 30.0% |
| !! | GTGTTTTAAATTGTGGATCA+TGG | + | chr3_3:88160034-88160053 | None:intergenic | 30.0% |
| ! | TGATCCACAATTTAAAACAC+TGG | - | chr3_3:88160034-88160053 | Msa0481780:intron | 30.0% |
| !! | TACACCAGTGTTTTAAATTG+TGG | + | chr3_3:88160041-88160060 | None:intergenic | 30.0% |
| CACATAGAAAGTAATCAAGT+AGG | + | chr3_3:88160088-88160107 | None:intergenic | 30.0% | |
| TATTATGACAGATAATCTGG+TGG | - | chr3_3:88160113-88160132 | Msa0481780:intron | 30.0% | |
| CACAAGAAGTTAATGGTATA+TGG | - | chr3_3:88160196-88160215 | Msa0481780:intron | 30.0% | |
| TTACGAAAAGCAGAAAATAG+AGG | + | chr3_3:88160490-88160509 | None:intergenic | 30.0% | |
| AGAATCCTGCAAATTTGATT+CGG | + | chr3_3:88160577-88160596 | None:intergenic | 30.0% | |
| !! | AATTTTACCTCCTCTAAAAG+TGG | + | chr3_3:88160697-88160716 | None:intergenic | 30.0% |
| GAGGTAAAGTGATTTATGTT+TGG | + | chr3_3:88160872-88160891 | None:intergenic | 30.0% | |
| ATCATTAACATATAGGCAAC+TGG | + | chr3_3:88160968-88160987 | None:intergenic | 30.0% | |
| AGTTTGAACAAGCAAATCAA+TGG | + | chr3_3:88161075-88161094 | None:intergenic | 30.0% | |
| AAATGACTTATAAAGCAGCT+TGG | + | chr3_3:88161145-88161164 | None:intergenic | 30.0% | |
| TTTCATTTATGGTTGACACT+TGG | + | chr3_3:88161225-88161244 | None:intergenic | 30.0% | |
| TGCATAAGTATTCAGCAAAA+AGG | + | chr3_3:88161357-88161376 | None:intergenic | 30.0% | |
| !! | TGCAATGTCAATTTCAAGTT+TGG | - | chr3_3:88161373-88161392 | Msa0481780:intron | 30.0% |
| ! | CTTTCTACATTTGAAGCATA+AGG | + | chr3_3:88161480-88161499 | None:intergenic | 30.0% |
| AGGTGGTATTAATGGTAATA+AGG | + | chr3_3:88161667-88161686 | None:intergenic | 30.0% | |
| GAAGAAATAGGTGGTATTAA+TGG | + | chr3_3:88161675-88161694 | None:intergenic | 30.0% | |
| TAAAACAGTCAACTAGTAGA+AGG | + | chr3_3:88161900-88161919 | None:intergenic | 30.0% | |
| !!! | TTCATTTATTTTGTGTGGGA+GGG | - | chr3_3:88162096-88162115 | Msa0481780:intron | 30.0% |
| ! | GTTATTCAGTTACGTTTTTG+AGG | - | chr3_3:88162126-88162145 | Msa0481780:intron | 30.0% |
| !! | TATTCAGTTACGTTTTTGAG+GGG | - | chr3_3:88162128-88162147 | Msa0481780:intron | 30.0% |
| GTATTTGGAAAAGCTTCATT+GGG | + | chr3_3:88162173-88162192 | None:intergenic | 30.0% | |
| TGTATTTGGAAAAGCTTCAT+TGG | + | chr3_3:88162174-88162193 | None:intergenic | 30.0% | |
| ! | CAGATCTCTCTTAATTTTGT+TGG | + | chr3_3:88162293-88162312 | None:intergenic | 30.0% |
| AATTAAGAGAGATCTGTGAT+TGG | - | chr3_3:88162297-88162316 | Msa0481780:intron | 30.0% | |
| ATTAAGAGAGATCTGTGATT+GGG | - | chr3_3:88162298-88162317 | Msa0481780:intron | 30.0% | |
| !! | TTTGTGGTATGCAGTTTTAT+AGG | - | chr3_3:88162405-88162424 | Msa0481780:intron | 30.0% |
| ! | CGTTCTATTTTGTAACAAGA+TGG | + | chr3_3:88162466-88162485 | None:intergenic | 30.0% |
| ACAAAATAGAACGTCAGTAT+AGG | - | chr3_3:88162473-88162492 | Msa0481780:intron | 30.0% | |
| CAAAATAGAACGTCAGTATA+GGG | - | chr3_3:88162474-88162493 | Msa0481780:intron | 30.0% | |
| GAAATACCAGAACAAAAACT+TGG | + | chr3_3:88162553-88162572 | None:intergenic | 30.0% | |
| CACAAGAAAATATCGTTATC+AGG | + | chr3_3:88162586-88162605 | None:intergenic | 30.0% | |
| TGTCAATGAATTTATCATCC+TGG | + | chr3_3:88162609-88162628 | None:intergenic | 30.0% | |
| ! | TCACAACTTTGCATATCTTT+TGG | - | chr3_3:88162827-88162846 | Msa0481780:intron | 30.0% |
| TATAATTTGACGGTGTATTG+CGG | + | chr3_3:88162859-88162878 | None:intergenic | 30.0% | |
| TATGTATACGTGGATAGTAA+TGG | - | chr3_3:88162917-88162936 | Msa0481780:intron | 30.0% | |
| ! | GATAGTAATGGAAGAAAACA+AGG | - | chr3_3:88162929-88162948 | Msa0481780:intron | 30.0% |
| ! | TAGATTTTTGTGTGTACACA+TGG | + | chr3_3:88162998-88163017 | None:intergenic | 30.0% |
| TGTGTACACACAAAAATCTA+TGG | - | chr3_3:88162998-88163017 | Msa0481780:intron | 30.0% | |
| ! | TAGAAGTGAAGTACTTCAAA+CGG | + | chr3_3:88163061-88163080 | None:intergenic | 30.0% |
| TTCAATAAGTACTTTCCTGT+CGG | - | chr3_3:88163125-88163144 | Msa0481780:intron | 30.0% | |
| TAAACATGAGAGTTGTTCAA+AGG | + | chr3_3:88163337-88163356 | None:intergenic | 30.0% | |
| TTTGAACAACTCTCATGTTT+AGG | - | chr3_3:88163336-88163355 | Msa0481780:CDS | 30.0% | |
| TTCACCAAATGAATCGAGTT+AGG | - | chr3_3:88158907-88158926 | Msa0481780:three_prime_UTR | 35.0% | |
| TAAGAAATTAACGCCGAATC+TGG | - | chr3_3:88159068-88159087 | Msa0481780:three_prime_UTR | 35.0% | |
| AAGAGAATCTCATCGATGAA+TGG | + | chr3_3:88159144-88159163 | None:intergenic | 35.0% | |
| ATCATAGAAGGAAACATGTG+CGG | + | chr3_3:88159172-88159191 | None:intergenic | 35.0% | |
| TCAACATCGAAACTAATCAG+TGG | - | chr3_3:88159193-88159212 | Msa0481780:intron | 35.0% | |
| !! | GATCTCTGTTTGTTGTTAAG+AGG | - | chr3_3:88159235-88159254 | Msa0481780:intron | 35.0% |
| ! | GATTGCTGTGATTTTTCTTC+AGG | - | chr3_3:88159317-88159336 | Msa0481780:intron | 35.0% |
| ATCACAATAAACTGAAACCG+AGG | + | chr3_3:88159352-88159371 | None:intergenic | 35.0% | |
| AAATAACCGCTATAGTGTAG+CGG | - | chr3_3:88159750-88159769 | Msa0481780:CDS | 35.0% | |
| TAAATTCCGCTACACTATAG+CGG | + | chr3_3:88159759-88159778 | None:intergenic | 35.0% | |
| TTGTTCTGCAATGCACTATT+TGG | - | chr3_3:88159788-88159807 | Msa0481780:intron | 35.0% | |
| ACACCAAATTGCAGAATAGA+TGG | + | chr3_3:88159914-88159933 | None:intergenic | 35.0% | |
| GTTCTAATTCAGTAAGGCTA+CGG | + | chr3_3:88160000-88160019 | None:intergenic | 35.0% | |
| AATTGTGGATCATGGAAAAG+AGG | + | chr3_3:88160026-88160045 | None:intergenic | 35.0% | |
| GTAATCAAGTAGGGAATAGA+TGG | + | chr3_3:88160078-88160097 | None:intergenic | 35.0% | |
| ! | TAATCTGGTGGAGAATCTTT+TGG | - | chr3_3:88160125-88160144 | Msa0481780:intron | 35.0% |
| GCATTCCGATATAACAAGTA+TGG | + | chr3_3:88160174-88160193 | None:intergenic | 35.0% | |
| AATGCGTCACAAGAAGTTAA+TGG | - | chr3_3:88160189-88160208 | Msa0481780:intron | 35.0% | |
| CTACACAAATAGCTTGACTA+GGG | + | chr3_3:88160282-88160301 | None:intergenic | 35.0% | |
| ACTACACAAATAGCTTGACT+AGG | + | chr3_3:88160283-88160302 | None:intergenic | 35.0% | |
| ACAACACGCATAAACAAACA+TGG | + | chr3_3:88160312-88160331 | None:intergenic | 35.0% | |
| TTGTTAAATAGCCGCTATAG+CGG | - | chr3_3:88160328-88160347 | Msa0481780:intron | 35.0% | |
| ! | TTTTGCCGAATCAAATTTGC+AGG | - | chr3_3:88160569-88160588 | Msa0481780:intron | 35.0% |
| GATTCTTAATGCATACCCAA+AGG | - | chr3_3:88160591-88160610 | Msa0481780:intron | 35.0% | |
| TTTGAAGACATCGTTGCATT+TGG | + | chr3_3:88160622-88160641 | None:intergenic | 35.0% | |
| CAACGATGTCTTCAAACAAA+AGG | - | chr3_3:88160626-88160645 | Msa0481780:intron | 35.0% | |
| ATGTCTTCAAACAAAAGGTG+AGG | - | chr3_3:88160631-88160650 | Msa0481780:intron | 35.0% | |
| TGTCTTCAAACAAAAGGTGA+GGG | - | chr3_3:88160632-88160651 | Msa0481780:intron | 35.0% | |
| !! | AAGTTTGGTTCCACTTTTAG+AGG | - | chr3_3:88160684-88160703 | Msa0481780:intron | 35.0% |
| TCTAACATGAAGCTAGAATC+TGG | - | chr3_3:88160778-88160797 | Msa0481780:intron | 35.0% | |
| !!! | GATTTTGGCTAAAAGTGTGT+TGG | + | chr3_3:88160894-88160913 | None:intergenic | 35.0% |
| GCTTGGAGAGATAATTAAGT+GGG | + | chr3_3:88161128-88161147 | None:intergenic | 35.0% | |
| AGCTTGGAGAGATAATTAAG+TGG | + | chr3_3:88161129-88161148 | None:intergenic | 35.0% | |
| CTACAGAGGATAAAAACATC+AGG | + | chr3_3:88161184-88161203 | None:intergenic | 35.0% | |
| TAAGTATTCAGCAAAAAGGC+AGG | + | chr3_3:88161353-88161372 | None:intergenic | 35.0% | |
| TTGCAGACATGTAAGATTAC+TGG | - | chr3_3:88161453-88161472 | Msa0481780:intron | 35.0% | |
| !! | GTAGAAGGTGTTTGAATAGA+AGG | + | chr3_3:88161570-88161589 | None:intergenic | 35.0% |
| TTGGATGCAAGAAAAGTAGA+AGG | + | chr3_3:88161642-88161661 | None:intergenic | 35.0% | |
| !!! | GTTCATTTATTTTGTGTGGG+AGG | - | chr3_3:88162095-88162114 | Msa0481780:intron | 35.0% |
| !!! | TCATTTATTTTGTGTGGGAG+GGG | - | chr3_3:88162097-88162116 | Msa0481780:intron | 35.0% |
| ! | AAGAAGTGTACTTTCTGTCT+TGG | + | chr3_3:88162222-88162241 | None:intergenic | 35.0% |
| ! | AAGACAGAAAGTACACTTCT+TGG | - | chr3_3:88162221-88162240 | Msa0481780:CDS | 35.0% |
| TCTGTGATTGGGAAATAAGA+TGG | - | chr3_3:88162309-88162328 | Msa0481780:intron | 35.0% | |
| ATAAGATGGCAAGACCATAA+AGG | - | chr3_3:88162323-88162342 | Msa0481780:intron | 35.0% | |
| CAAGCGTGAAATTAGATTTG+TGG | - | chr3_3:88162389-88162408 | Msa0481780:intron | 35.0% | |
| ! | ATGCTTCCAAGTTTTTGTTC+TGG | - | chr3_3:88162544-88162563 | Msa0481780:intron | 35.0% |
| ! | TAACGATATTTTCTTGTGCC+AGG | - | chr3_3:88162588-88162607 | Msa0481780:intron | 35.0% |
| CATGAGTAATCGAACATCAA+AGG | - | chr3_3:88162662-88162681 | Msa0481780:intron | 35.0% | |
| AGTAATCGAACATCAAAGGT+TGG | - | chr3_3:88162666-88162685 | Msa0481780:intron | 35.0% | |
| GTAATCGAACATCAAAGGTT+GGG | - | chr3_3:88162667-88162686 | Msa0481780:intron | 35.0% | |
| AAGTTACACAAAACATGCCA+TGG | + | chr3_3:88162755-88162774 | None:intergenic | 35.0% | |
| AAGATATGCAAAGTTGTGAC+AGG | + | chr3_3:88162826-88162845 | None:intergenic | 35.0% | |
| AGAAAACCTATAAAACCTCC+AGG | + | chr3_3:88163193-88163212 | None:intergenic | 35.0% | |
| !! | TCAAAGGTGTTGTTCAAAAG+TGG | + | chr3_3:88163321-88163340 | None:intergenic | 35.0% |
| AGAAAGTTGTCAGAAGTAGT+TGG | - | chr3_3:88163415-88163434 | Msa0481780:five_prime_UTR | 35.0% | |
| TGCAACAAGTCTTAAGAACT+TGG | - | chr3_3:88163527-88163546 | Msa0481780:five_prime_UTR | 35.0% | |
| TTCACCAATGTTGTCAATCG+CGG | + | chr3_3:88159877-88159896 | None:intergenic | 40.0% | |
| CAGAATAGATGGCACAGATT+TGG | + | chr3_3:88159903-88159922 | None:intergenic | 40.0% | |
| GTGCCATCTATTCTGCAATT+TGG | - | chr3_3:88159908-88159927 | Msa0481780:intron | 40.0% | |
| GCAACTTCTTCACATTCTTC+TGG | + | chr3_3:88160231-88160250 | None:intergenic | 40.0% | |
| !!! | CTGCATTTTGATTACACGAC+AGG | + | chr3_3:88160522-88160541 | None:intergenic | 40.0% |
| CTGTCGTGTAATCAAAATGC+AGG | - | chr3_3:88160520-88160539 | Msa0481780:intron | 40.0% | |
| !! | TTGCATTTGGAAGTGCCTTT+GGG | + | chr3_3:88160609-88160628 | None:intergenic | 40.0% |
| !! | TTTGGTTCCACTTTTAGAGG+AGG | - | chr3_3:88160687-88160706 | Msa0481780:intron | 40.0% |
| ! | TTTGGCTAAAAGTGTGTTGG+AGG | + | chr3_3:88160891-88160910 | None:intergenic | 40.0% |
| TATCCTCTGTAGTGAGTTTG+AGG | - | chr3_3:88161192-88161211 | Msa0481780:CDS | 40.0% | |
| CTCGATAGCGCTTTCATTTA+TGG | + | chr3_3:88161236-88161255 | None:intergenic | 40.0% | |
| CAGCAAAAAGGCAGGAAAAT+CGG | + | chr3_3:88161345-88161364 | None:intergenic | 40.0% | |
| TAGAAGTGACACTTGCAGAA+TGG | + | chr3_3:88161518-88161537 | None:intergenic | 40.0% | |
| ! | GGTGTTTGAATAGAAGGTAC+AGG | + | chr3_3:88161564-88161583 | None:intergenic | 40.0% |
| ATTGTTTCGAGAGAGGTAGA+AGG | + | chr3_3:88161585-88161604 | None:intergenic | 40.0% | |
| ! | ACTGTTGATTGTTTCGAGAG+AGG | + | chr3_3:88161592-88161611 | None:intergenic | 40.0% |
| TCTCTCGAAACAATCAACAG+TGG | - | chr3_3:88161591-88161610 | Msa0481780:intron | 40.0% | |
| AAATGGGGGTAAGAGAAGAA+GGG | + | chr3_3:88161791-88161810 | None:intergenic | 40.0% | |
| TTTGGCATAGAGCTGGAAAT+GGG | + | chr3_3:88161807-88161826 | None:intergenic | 40.0% | |
| ATTTGGCATAGAGCTGGAAA+TGG | + | chr3_3:88161808-88161827 | None:intergenic | 40.0% | |
| TTTCCAGCTCTATGCCAAAT+AGG | - | chr3_3:88161808-88161827 | Msa0481780:intron | 40.0% | |
| ACTTTATCCCTGCTGATAAC+CGG | + | chr3_3:88161834-88161853 | None:intergenic | 40.0% | |
| !!! | CATTTATTTTGTGTGGGAGG+GGG | - | chr3_3:88162098-88162117 | Msa0481780:intron | 40.0% |
| AATAGAACGTCAGTATAGGG+TGG | - | chr3_3:88162477-88162496 | Msa0481780:intron | 40.0% | |
| !! | TTGGAAGCATTCCACACAAA+TGG | + | chr3_3:88162534-88162553 | None:intergenic | 40.0% |
| !! | CACAAACCTGGAGGTTTTAT+AGG | - | chr3_3:88163184-88163203 | Msa0481780:CDS | 40.0% |
| ! | GATATGTCGTGCAAGAGTTT+TGG | - | chr3_3:88163269-88163288 | Msa0481780:CDS | 40.0% |
| ! | ACTTGACTCGAGAGAAGAAG+AGG | + | chr3_3:88159002-88159021 | None:intergenic | 45.0% |
| ! | GTGCTGTGTTGATCCAGATT+CGG | + | chr3_3:88159084-88159103 | None:intergenic | 45.0% |
| ATAGAAGGAAACATGTGCGG+CGG | + | chr3_3:88159169-88159188 | None:intergenic | 45.0% | |
| TGGAGTCGCAAAGATGTTGA+AGG | - | chr3_3:88159213-88159232 | Msa0481780:intron | 45.0% | |
| TCTTCAGGAATGCTCAACCT+CGG | - | chr3_3:88159332-88159351 | Msa0481780:three_prime_UTR | 45.0% | |
| GTGATGAATCGGCGAAATAC+AGG | - | chr3_3:88159367-88159386 | Msa0481780:three_prime_UTR | 45.0% | |
| CGGATCATTCCACCAAGATA+CGG | + | chr3_3:88159857-88159876 | None:intergenic | 45.0% | |
| TGATCCGCGATTGACAACAT+TGG | - | chr3_3:88159870-88159889 | Msa0481780:intron | 45.0% | |
| TCGCGCTAAATAGTGCATTG+AGG | + | chr3_3:88159941-88159960 | None:intergenic | 45.0% | |
| CAAGTAGGGAATAGATGGCA+CGG | + | chr3_3:88160073-88160092 | None:intergenic | 45.0% | |
| GTTATACCGCTATAGCGTAG+CGG | - | chr3_3:88160352-88160371 | Msa0481780:intron | 45.0% | |
| CAAATTCCGCTACGCTATAG+CGG | + | chr3_3:88160361-88160380 | None:intergenic | 45.0% | |
| TTGTCGGGTAGAGATTACAG+TGG | - | chr3_3:88160428-88160447 | Msa0481780:intron | 45.0% | |
| !! | GTTGCATTTGGAAGTGCCTT+TGG | + | chr3_3:88160610-88160629 | None:intergenic | 45.0% |
| GTTCCTCAAACTCACTACAG+AGG | + | chr3_3:88161198-88161217 | None:intergenic | 45.0% | |
| GTGACACTTGCAGAATGGTA+GGG | + | chr3_3:88161513-88161532 | None:intergenic | 45.0% | |
| AGTGACACTTGCAGAATGGT+AGG | + | chr3_3:88161514-88161533 | None:intergenic | 45.0% | |
| !! | AGTGTCACTTCTACTGTTCC+TGG | - | chr3_3:88161525-88161544 | Msa0481780:intron | 45.0% |
| ACAGGAGACAAAAAACCACC+AGG | + | chr3_3:88161546-88161565 | None:intergenic | 45.0% | |
| AACAATCAACAGTGGCACTC+AGG | - | chr3_3:88161599-88161618 | Msa0481780:intron | 45.0% | |
| GTATGATGAACAGCTGCACT+AGG | + | chr3_3:88161708-88161727 | None:intergenic | 45.0% | |
| ! | GTATTGGCGTGGTAGATTCT+GGG | + | chr3_3:88161730-88161749 | None:intergenic | 45.0% |
| CAGAATCTACCACGCCAATA+CGG | - | chr3_3:88161729-88161748 | Msa0481780:intron | 45.0% | |
| AATGGGGGTAAGAGAAGAAG+GGG | + | chr3_3:88161790-88161809 | None:intergenic | 45.0% | |
| GAAATGGGGGTAAGAGAAGA+AGG | + | chr3_3:88161792-88161811 | None:intergenic | 45.0% | |
| TTGGCATAGAGCTGGAAATG+GGG | + | chr3_3:88161806-88161825 | None:intergenic | 45.0% | |
| AAATAGGCCGGTTATCAGCA+GGG | - | chr3_3:88161824-88161843 | Msa0481780:intron | 45.0% | |
| CCAGTGATACAAGTGCATCA+CGG | + | chr3_3:88161857-88161876 | None:intergenic | 45.0% | |
| !! | TGCACTTGTATCACTGGTTC+AGG | - | chr3_3:88161860-88161879 | Msa0481780:intron | 45.0% |
| !! | TCACTGGTTCAGGTACTTCA+TGG | - | chr3_3:88161870-88161889 | Msa0481780:intron | 45.0% |
| !! | TCAGTTACGTTTTTGAGGGG+TGG | - | chr3_3:88162131-88162150 | Msa0481780:intron | 45.0% |
| !! | CAGTTACGTTTTTGAGGGGT+GGG | - | chr3_3:88162132-88162151 | Msa0481780:intron | 45.0% |
| !! | AGTTACGTTTTTGAGGGGTG+GGG | - | chr3_3:88162133-88162152 | Msa0481780:intron | 45.0% |
| GATGGCAAGACCATAAAGGA+AGG | - | chr3_3:88162327-88162346 | Msa0481780:intron | 45.0% | |
| TTGACGGTGTATTGCGGAAT+CGG | + | chr3_3:88162853-88162872 | None:intergenic | 45.0% | |
| CACAAGTACCACGAAGTGTA+AGG | + | chr3_3:88163157-88163176 | None:intergenic | 45.0% | |
| CTTCGTGGTACTTGTGCTAT+TGG | - | chr3_3:88163161-88163180 | Msa0481780:CDS | 45.0% | |
| ! | TTGTGCTATTGGCACAAACC+TGG | - | chr3_3:88163172-88163191 | Msa0481780:CDS | 45.0% |
| AGTCATAGGCATCCATGCAA+AGG | - | chr3_3:88163247-88163266 | Msa0481780:CDS | 45.0% | |
| TGCACGACATATCCTTTGCA+TGG | + | chr3_3:88163262-88163281 | None:intergenic | 45.0% | |
| !!! | AATTTATTTTTTTACTTAAA+TGG | - | chr3_3:88163504-88163523 | Msa0481780:five_prime_UTR | 5.0% |
| CGATGAATGGATCCATGCGT+TGG | + | chr3_3:88159131-88159150 | None:intergenic | 50.0% | |
| GTCACTTCTACTGTTCCTGG+TGG | - | chr3_3:88161528-88161547 | Msa0481780:intron | 50.0% | |
| GGCATGGGTGAAGAAATAGG+TGG | + | chr3_3:88161684-88161703 | None:intergenic | 50.0% | |
| GGTGGCATGGGTGAAGAAAT+AGG | + | chr3_3:88161687-88161706 | None:intergenic | 50.0% | |
| TGATGAACAGCTGCACTAGG+TGG | + | chr3_3:88161705-88161724 | None:intergenic | 50.0% | |
| ! | CGTATTGGCGTGGTAGATTC+TGG | + | chr3_3:88161731-88161750 | None:intergenic | 50.0% |
| GTAAGAGAAGAAGGGGGGTT+AGG | + | chr3_3:88161783-88161802 | None:intergenic | 50.0% | |
| ATGGGGGTAAGAGAAGAAGG+GGG | + | chr3_3:88161789-88161808 | None:intergenic | 50.0% | |
| TGGCATAGAGCTGGAAATGG+GGG | + | chr3_3:88161805-88161824 | None:intergenic | 50.0% | |
| CAGCTCTATGCCAAATAGGC+CGG | - | chr3_3:88161812-88161831 | Msa0481780:intron | 50.0% | |
| CTGCTGATAACCGGCCTATT+TGG | + | chr3_3:88161825-88161844 | None:intergenic | 50.0% | |
| CAAATAGGCCGGTTATCAGC+AGG | - | chr3_3:88161823-88161842 | Msa0481780:intron | 50.0% | |
| CCGTGATGCACTTGTATCAC+TGG | - | chr3_3:88161854-88161873 | Msa0481780:intron | 50.0% | |
| !! | GTTACGTTTTTGAGGGGTGG+GGG | - | chr3_3:88162134-88162153 | Msa0481780:intron | 50.0% |
| CATGGTCGAGTCAGATGTGT+TGG | + | chr3_3:88162737-88162756 | None:intergenic | 50.0% | |
| ! | CAACACATCTGACTCGACCA+TGG | - | chr3_3:88162735-88162754 | Msa0481780:intron | 50.0% |
| AGTGTAAGGAGAACACCGAC+AGG | + | chr3_3:88163143-88163162 | None:intergenic | 50.0% | |
| GGTGTTCTCCTTACACTTCG+TGG | - | chr3_3:88163146-88163165 | Msa0481780:intron | 50.0% | |
| TGCTATTGGCACAAACCTGG+AGG | - | chr3_3:88163175-88163194 | Msa0481780:CDS | 50.0% | |
| TCTCACTGTGCTCCAACGCA+TGG | - | chr3_3:88159116-88159135 | Msa0481780:three_prime_UTR | 55.0% | |
| !! | GCGAAAGCACCGTATCTTGG+TGG | - | chr3_3:88159845-88159864 | Msa0481780:intron | 55.0% |
| GCGGTATAACGCCGCTATAG+CGG | + | chr3_3:88160342-88160361 | None:intergenic | 55.0% | |
| CACTTGCAGAATGGTAGGGC+TGG | + | chr3_3:88161509-88161528 | None:intergenic | 55.0% | |
| ACAGCTGCACTAGGTGGCAT+GGG | + | chr3_3:88161699-88161718 | None:intergenic | 55.0% | |
| AACAGCTGCACTAGGTGGCA+TGG | + | chr3_3:88161700-88161719 | None:intergenic | 55.0% | |
| AAGAAGGGGGGTTAGGTGGT+GGG | + | chr3_3:88161776-88161795 | None:intergenic | 55.0% | |
| AGAGAAGAAGGGGGGTTAGG+TGG | + | chr3_3:88161780-88161799 | None:intergenic | 55.0% | |
| TGGGGGTAAGAGAAGAAGGG+GGG | + | chr3_3:88161788-88161807 | None:intergenic | 55.0% | |
| CGGCCTATTTGGCATAGAGC+TGG | + | chr3_3:88161814-88161833 | None:intergenic | 55.0% | |
| !! | GGCGCGAAAGCACCGTATCT+TGG | - | chr3_3:88159842-88159861 | Msa0481780:intron | 60.0% |
| !! | GGTTAGGTGGTGGGAAGGGT+TGG | + | chr3_3:88161767-88161786 | None:intergenic | 60.0% |
| GAAGAAGGGGGGTTAGGTGG+TGG | + | chr3_3:88161777-88161796 | None:intergenic | 60.0% | |
| !! | ACGTTTTTGAGGGGTGGGGG+AGG | - | chr3_3:88162137-88162156 | Msa0481780:intron | 60.0% |
| !! | AGCGGAGTGCCGTATTGGCG+TGG | + | chr3_3:88161741-88161760 | None:intergenic | 65.0% |
| !! | GGAGCAGCGGAGTGCCGTAT+TGG | + | chr3_3:88161746-88161765 | None:intergenic | 65.0% |
| GGTGGGAAGGGTTGGAGCAG+CGG | + | chr3_3:88161759-88161778 | None:intergenic | 65.0% | |
| !! | GGGGGGTTAGGTGGTGGGAA+GGG | + | chr3_3:88161771-88161790 | None:intergenic | 65.0% |
| !! | AGGGGGGTTAGGTGGTGGGA+AGG | + | chr3_3:88161772-88161791 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88158866 | 88163550 | 88158866 | ID=Msa0481780;Name=Msa0481780 |
| chr3_3 | mRNA | 88158866 | 88163550 | 88158866 | ID=Msa0481780-mRNA-1;Parent=Msa0481780;Name=Msa0481780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=191|0.66|0.85|1|0.83|0.71|7|777|242 |
| chr3_3 | exon | 88158866 | 88159210 | 88158866 | ID=Msa0481780-mRNA-1:exon:25631;Parent=Msa0481780-mRNA-1 |
| chr3_3 | exon | 88159318 | 88159806 | 88159318 | ID=Msa0481780-mRNA-1:exon:25630;Parent=Msa0481780-mRNA-1 |
| chr3_3 | exon | 88160796 | 88160957 | 88160796 | ID=Msa0481780-mRNA-1:exon:25629;Parent=Msa0481780-mRNA-1 |
| chr3_3 | exon | 88161095 | 88161212 | 88161095 | ID=Msa0481780-mRNA-1:exon:25628;Parent=Msa0481780-mRNA-1 |
| chr3_3 | exon | 88162151 | 88162292 | 88162151 | ID=Msa0481780-mRNA-1:exon:25627;Parent=Msa0481780-mRNA-1 |
| chr3_3 | exon | 88163028 | 88163077 | 88163028 | ID=Msa0481780-mRNA-1:exon:25626;Parent=Msa0481780-mRNA-1 |
| chr3_3 | exon | 88163160 | 88163550 | 88163160 | ID=Msa0481780-mRNA-1:exon:25625;Parent=Msa0481780-mRNA-1 |
| chr3_3 | five_prime_UTR | 88163360 | 88163550 | 88163360 | ID=Msa0481780-mRNA-1:five_prime_utr;Parent=Msa0481780-mRNA-1 |
| chr3_3 | CDS | 88163160 | 88163359 | 88163160 | ID=Msa0481780-mRNA-1:cds;Parent=Msa0481780-mRNA-1 |
| chr3_3 | CDS | 88163028 | 88163077 | 88163028 | ID=Msa0481780-mRNA-1:cds;Parent=Msa0481780-mRNA-1 |
| chr3_3 | CDS | 88162151 | 88162292 | 88162151 | ID=Msa0481780-mRNA-1:cds;Parent=Msa0481780-mRNA-1 |
| chr3_3 | CDS | 88161095 | 88161212 | 88161095 | ID=Msa0481780-mRNA-1:cds;Parent=Msa0481780-mRNA-1 |
| chr3_3 | CDS | 88160796 | 88160957 | 88160796 | ID=Msa0481780-mRNA-1:cds;Parent=Msa0481780-mRNA-1 |
| chr3_3 | CDS | 88159750 | 88159806 | 88159750 | ID=Msa0481780-mRNA-1:cds;Parent=Msa0481780-mRNA-1 |
| chr3_3 | three_prime_UTR | 88159318 | 88159749 | 88159318 | ID=Msa0481780-mRNA-1:three_prime_utr;Parent=Msa0481780-mRNA-1 |
| chr3_3 | three_prime_UTR | 88158866 | 88159210 | 88158866 | ID=Msa0481780-mRNA-1:three_prime_utr;Parent=Msa0481780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
