AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481820 MtrunA17_Chr7g0266701 96.498 257 7 2 1 255 1 257 0.0 518
Msa0481820 MtrunA17_Chr2g0321631 47.692 260 115 6 1 250 1 249 7.09e-81 243
Msa0481820 MtrunA17_Chr4g0026141 60.674 178 67 2 2 179 3 177 4.15e-75 229
Msa0481820 MtrunA17_Chr4g0038751 44.186 172 76 6 6 174 17 171 1.26e-42 147
Msa0481820 MtrunA17_Chr5g0417791 39.645 169 94 4 4 172 3 163 6.92e-38 133
Msa0481820 MtrunA17_Chr4g0076731 42.683 164 81 5 2 165 52 202 9.49e-38 137
Msa0481820 MtrunA17_Chr2g0326361 42.262 168 87 5 4 169 14 173 1.64e-36 131
Msa0481820 MtrunA17_Chr4g0042561 39.766 171 95 4 4 174 9 171 2.91e-36 129
Msa0481820 MtrunA17_Chr6g0453131 37.791 172 97 5 1 168 12 177 8.47e-36 131
Msa0481820 MtrunA17_Chr8g0384721 33.778 225 127 9 4 221 7 216 2.49e-35 127
Msa0481820 MtrunA17_Chr8g0361731 31.048 248 152 10 4 239 14 254 4.54e-35 129
Msa0481820 MtrunA17_Chr6g0481091 42.331 163 84 6 3 165 5 157 5.33e-35 125
Msa0481820 MtrunA17_Chr3g0109821 36.453 203 109 8 4 204 6 190 2.39e-34 130
Msa0481820 MtrunA17_Chr8g0359921 39.264 163 89 7 3 165 13 165 8.45e-34 124
Msa0481820 MtrunA17_Chr5g0400461 42.690 171 78 7 3 166 5 162 1.16e-33 124
Msa0481820 MtrunA17_Chr5g0433781 40.964 166 86 6 4 168 6 160 1.36e-33 128
Msa0481820 MtrunA17_Chr2g0318081 37.569 181 93 8 4 182 16 178 1.38e-33 124
Msa0481820 MtrunA17_Chr4g0018391 33.929 224 119 8 3 224 6 202 3.53e-33 123
Msa0481820 MtrunA17_Chr5g0417001 32.864 213 129 7 6 210 16 222 4.32e-33 124
Msa0481820 MtrunA17_Chr7g0263931 39.286 168 94 4 4 170 11 171 6.26e-33 122
Msa0481820 MtrunA17_Chr2g0309891 40.244 164 87 6 3 165 5 158 1.00e-32 122
Msa0481820 MtrunA17_Chr6g0453451 39.053 169 93 5 4 172 20 178 2.13e-32 120
Msa0481820 MtrunA17_Chr7g0252971 36.548 197 108 6 3 191 7 194 2.14e-32 121
Msa0481820 MtrunA17_Chr3g0130731 35.227 176 102 5 4 178 7 171 2.25e-32 120
Msa0481820 MtrunA17_Chr1g0147421 37.427 171 94 5 2 171 25 183 1.02e-31 119
Msa0481820 MtrunA17_Chr5g0398971 27.273 297 161 11 3 253 6 293 5.12e-31 117
Msa0481820 MtrunA17_Chr3g0139331 39.394 165 86 6 2 165 9 160 7.06e-31 117
Msa0481820 MtrunA17_Chr4g0054791 40.361 166 86 6 4 166 6 161 9.73e-31 116
Msa0481820 MtrunA17_Chr4g0047841 35.912 181 91 5 4 165 15 189 1.49e-30 116
Msa0481820 MtrunA17_Chr1g0201021 42.236 161 81 6 6 165 21 170 3.87e-30 118
Msa0481820 MtrunA17_Chr1g0200561 38.509 161 88 4 4 164 19 168 4.71e-30 115
Msa0481820 MtrunA17_Chr2g0318101 33.195 241 111 8 3 236 14 211 4.89e-30 115
Msa0481820 MtrunA17_Chr3g0124761 36.970 165 94 6 4 168 7 161 7.97e-30 113
Msa0481820 MtrunA17_Chr3g0130101 33.493 209 121 6 4 212 7 197 1.00e-29 114
Msa0481820 MtrunA17_Chr6g0484441 39.024 164 86 6 2 165 3 152 1.04e-29 113
Msa0481820 MtrunA17_Chr3g0128151 38.095 168 88 6 1 165 19 173 1.08e-29 117
Msa0481820 MtrunA17_Chr4g0060931 37.423 163 92 5 3 165 16 168 2.25e-29 113
Msa0481820 MtrunA17_Chr3g0091921 38.889 162 89 4 4 165 16 167 4.66e-29 111
Msa0481820 MtrunA17_Chr1g0183741 35.976 164 89 6 4 166 10 158 5.24e-29 110
Msa0481820 MtrunA17_Chr3g0128111 37.654 162 85 6 7 165 45 193 6.79e-29 109
Msa0481820 MtrunA17_Chr4g0056541 35.802 162 93 4 3 164 6 156 9.23e-29 112
Msa0481820 MtrunA17_Chr5g0405211 36.310 168 92 5 1 164 1 157 1.36e-28 111
Msa0481820 MtrunA17_Chr5g0428991 37.725 167 88 6 1 164 22 175 1.49e-28 113
Msa0481820 MtrunA17_Chr8g0346001 36.517 178 95 6 4 172 15 183 1.55e-28 112
Msa0481820 MtrunA17_Chr2g0316971 39.024 164 90 6 3 165 22 176 2.15e-28 111
Msa0481820 MtrunA17_Chr8g0372121 34.731 167 98 4 4 170 6 161 2.68e-28 109
Msa0481820 MtrunA17_Chr1g0197351 41.104 163 90 6 4 165 42 199 1.15e-27 110
Msa0481820 MtrunA17_Chr8g0385991 37.037 162 87 4 4 161 14 164 1.76e-27 105
Msa0481820 MtrunA17_Chr8g0345691 37.037 162 87 5 1 161 9 156 2.16e-27 108
Msa0481820 MtrunA17_Chr3g0144271 38.788 165 91 6 4 167 23 178 2.44e-27 108
Msa0481820 MtrunA17_Chr2g0311651 34.021 194 109 7 2 182 19 206 2.56e-27 107
Msa0481820 MtrunA17_Chr2g0311661 27.869 244 155 8 2 234 18 251 3.67e-27 106
Msa0481820 MtrunA17_Chr2g0309331 36.310 168 97 4 4 171 10 167 6.03e-27 106
Msa0481820 MtrunA17_Chr1g0197361 36.250 160 92 6 6 165 10 159 7.98e-27 108
Msa0481820 MtrunA17_Chr7g0261411 34.375 160 89 5 4 162 10 154 4.76e-26 103
Msa0481820 MtrunA17_Chr7g0217711 42.636 129 67 4 7 135 22 143 8.46e-26 99.8
Msa0481820 MtrunA17_Chr7g0214071 36.310 168 82 7 4 166 15 162 9.83e-26 101
Msa0481820 MtrunA17_Chr3g0092671 34.375 160 95 5 6 165 7 156 1.43e-25 104
Msa0481820 MtrunA17_Chr7g0217721 36.628 172 90 6 7 167 22 185 1.45e-25 103
Msa0481820 MtrunA17_Chr6g0461661 34.146 164 98 5 3 165 17 171 1.69e-25 103
Msa0481820 MtrunA17_Chr8g0364791 33.962 159 95 5 6 164 8 156 2.11e-25 103
Msa0481820 MtrunA17_Chr8g0345711 38.686 137 79 4 2 137 10 142 2.68e-25 98.2
Msa0481820 MtrunA17_Chr8g0384201 33.962 159 95 5 6 164 8 156 3.01e-25 103
Msa0481820 MtrunA17_Chr5g0442771 35.542 166 93 6 6 164 20 178 3.49e-25 101
Msa0481820 MtrunA17_Chr4g0017921 33.854 192 110 6 4 195 8 182 1.09e-24 100
Msa0481820 MtrunA17_Chr7g0253011 34.940 166 96 5 3 165 16 172 1.17e-24 100
Msa0481820 MtrunA17_Chr2g0312321 31.214 173 103 6 4 176 11 167 1.48e-23 96.7
Msa0481820 MtrunA17_Chr3g0131911 33.728 169 96 6 4 166 14 172 2.87e-23 94.7
Msa0481820 MtrunA17_Chr4g0050701 33.929 168 89 7 4 166 11 161 3.77e-23 93.2
Msa0481820 MtrunA17_Chr8g0345671 36.025 161 86 6 3 161 10 155 6.42e-23 96.3
Msa0481820 MtrunA17_Chr3g0113001 40.870 115 64 3 58 172 14 124 1.37e-20 88.6
Msa0481820 MtrunA17_Chr8g0345721 31.098 164 83 5 7 142 38 199 4.40e-20 85.5
Msa0481820 MtrunA17_Chr2g0321741 28.571 245 143 9 26 250 14 246 3.44e-19 85.5
Msa0481820 MtrunA17_Chr8g0345701 35.333 150 76 6 3 137 6 149 4.76e-19 82.0
Msa0481820 MtrunA17_Chr8g0345731 32.903 155 97 6 2 152 22 173 5.76e-18 79.0
Msa0481820 MtrunA17_Chr3g0113031 40.000 100 58 2 79 178 9 106 1.48e-17 79.7
Msa0481820 MtrunA17_Chr8g0345741 35.156 128 78 4 15 141 2 125 2.50e-17 76.6
Msa0481820 MtrunA17_Chr7g0243371 42.308 78 43 2 60 135 13 90 9.76e-16 71.2
Msa0481820 MtrunA17_Chr3g0130321 28.655 171 100 7 4 166 7 163 2.25e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481820 AT5G22380.1 45.968 248 118 3 2 249 3 234 6.68e-76 230
Msa0481820 AT3G44350.2 45.850 253 107 6 7 249 8 240 1.81e-72 222
Msa0481820 AT3G44350.1 53.797 158 68 3 7 164 8 160 1.49e-58 183
Msa0481820 AT2G17040.1 43.931 173 75 6 6 174 8 162 4.16e-42 145
Msa0481820 AT4G17980.1 43.114 167 81 7 4 166 6 162 2.67e-39 137
Msa0481820 AT4G17980.2 43.114 167 81 7 4 166 6 162 4.74e-39 137
Msa0481820 AT2G02450.1 41.436 181 90 6 6 186 53 217 1.05e-38 139
Msa0481820 AT2G02450.2 41.436 181 90 6 6 186 53 217 1.58e-38 139
Msa0481820 AT5G08790.1 32.157 255 150 6 3 242 6 252 5.13e-38 134
Msa0481820 AT1G69490.1 35.865 237 136 7 4 234 9 235 1.72e-36 130
Msa0481820 AT4G27410.2 33.175 211 121 6 3 213 13 203 1.77e-36 131
Msa0481820 AT5G63790.1 34.862 218 119 6 3 216 49 247 1.58e-35 129
Msa0481820 AT5G63790.2 33.659 205 123 5 3 202 59 255 1.85e-35 129
Msa0481820 AT5G46590.1 43.293 164 83 6 4 166 6 160 6.28e-35 127
Msa0481820 AT1G65910.1 40.206 194 103 8 4 196 6 187 6.82e-35 132
Msa0481820 AT4G27410.3 32.143 224 123 7 3 213 13 220 1.26e-34 126
Msa0481820 AT1G26870.1 33.716 261 135 10 2 239 14 259 1.30e-34 129
Msa0481820 AT5G17260.1 36.759 253 120 14 3 246 5 226 2.35e-34 129
Msa0481820 AT1G32510.1 41.176 170 84 6 4 166 6 166 3.71e-34 124
Msa0481820 AT3G15500.1 38.272 162 88 5 3 164 13 162 3.88e-34 125
Msa0481820 AT3G17730.1 41.718 163 85 6 3 165 5 157 4.51e-34 123
Msa0481820 AT1G01720.1 34.392 189 112 5 4 192 7 183 4.56e-33 122
Msa0481820 AT1G52890.1 37.267 161 89 5 4 164 14 162 9.65e-33 122
Msa0481820 AT5G46590.2 41.722 151 82 4 4 153 6 151 2.81e-32 119
Msa0481820 AT3G03200.1 44.242 165 75 7 4 164 6 157 1.06e-31 122
Msa0481820 AT1G33060.2 40.361 166 85 6 1 164 21 174 1.30e-31 122
Msa0481820 AT1G33060.1 40.361 166 85 6 1 164 21 174 1.39e-31 122
Msa0481820 AT1G61110.1 35.429 175 98 5 3 169 15 182 1.77e-31 118
Msa0481820 AT1G34180.3 41.718 163 79 6 6 165 18 167 1.93e-31 120
Msa0481820 AT5G39820.1 34.513 226 120 9 2 207 18 235 2.27e-31 118
Msa0481820 AT3G04060.1 39.157 166 86 5 3 165 19 172 2.29e-31 118
Msa0481820 AT2G24430.2 38.462 169 91 6 4 171 16 172 2.70e-31 118
Msa0481820 AT2G24430.1 38.462 169 91 6 4 171 16 172 2.70e-31 118
Msa0481820 AT3G49530.2 37.500 168 96 4 1 168 10 168 3.16e-31 119
Msa0481820 AT4G35580.1 39.024 164 90 5 1 164 6 159 3.64e-31 120
Msa0481820 AT4G35580.2 39.024 164 90 5 1 164 6 159 4.33e-31 120
Msa0481820 AT4G35580.3 39.024 164 90 5 1 164 6 159 4.61e-31 120
Msa0481820 AT1G34180.1 41.718 163 79 6 6 165 18 167 4.72e-31 120
Msa0481820 AT5G62380.2 36.585 164 93 5 1 164 4 156 5.82e-31 117
Msa0481820 AT5G62380.1 36.585 164 93 5 1 164 4 156 5.82e-31 117
Msa0481820 AT3G49530.1 30.769 260 156 6 1 253 10 252 6.23e-31 119
Msa0481820 AT5G24590.2 39.634 164 90 5 1 164 10 164 1.19e-30 118
Msa0481820 AT1G77450.1 36.364 165 95 5 4 168 10 164 1.24e-30 114
Msa0481820 AT5G61430.1 38.650 163 90 6 3 165 15 167 1.42e-30 116
Msa0481820 AT2G43000.1 32.836 201 122 5 6 205 20 208 2.44e-30 114
Msa0481820 AT1G71930.2 31.330 233 136 7 1 224 1 218 4.30e-30 115
Msa0481820 AT1G71930.1 31.330 233 136 7 1 224 1 218 4.30e-30 115
Msa0481820 AT1G34180.4 39.766 171 83 6 6 165 18 179 6.21e-30 117
Msa0481820 AT3G18400.1 37.500 168 92 5 2 169 3 157 7.19e-30 114
Msa0481820 AT4G36160.1 37.654 162 90 4 3 164 9 159 8.17e-30 115
Msa0481820 AT4G36160.3 37.654 162 90 4 3 164 9 159 8.17e-30 115
Msa0481820 AT4G36160.2 37.654 162 90 4 3 164 13 163 9.90e-30 115
Msa0481820 AT1G34180.2 39.766 171 83 6 6 165 18 179 1.26e-29 117
Msa0481820 AT3G10490.1 37.349 166 93 6 3 167 26 181 1.47e-29 111
Msa0481820 AT3G15510.1 37.791 172 94 5 8 172 21 186 1.48e-29 114
Msa0481820 AT2G27300.1 41.985 131 70 3 4 134 14 138 1.57e-29 114
Msa0481820 AT5G22290.1 41.727 139 73 4 6 142 23 155 1.84e-29 113
Msa0481820 AT2G18060.3 37.267 161 90 4 4 164 9 158 2.55e-29 114
Msa0481820 AT2G18060.1 37.267 161 90 4 4 164 9 158 2.55e-29 114
Msa0481820 AT3G10480.1 39.024 164 89 7 3 165 26 179 2.76e-29 115
Msa0481820 AT5G07680.2 36.196 163 94 4 3 165 2 154 3.02e-29 112
Msa0481820 AT5G07680.1 36.196 163 94 4 3 165 16 168 3.31e-29 112
Msa0481820 AT3G10480.2 39.394 165 86 7 3 165 26 178 5.48e-29 114
Msa0481820 AT1G34190.1 38.509 161 87 6 6 165 18 167 7.58e-29 114
Msa0481820 AT3G15170.1 39.264 163 89 6 4 165 20 173 8.56e-29 111
Msa0481820 AT3G44290.2 31.163 215 128 5 6 218 16 212 1.22e-28 108
Msa0481820 AT5G66300.1 27.622 286 162 8 3 254 11 285 1.71e-28 110
Msa0481820 AT3G12910.1 35.227 176 98 5 6 171 23 192 2.15e-28 110
Msa0481820 AT1G62700.1 37.888 161 89 7 4 164 7 156 2.76e-28 111
Msa0481820 AT1G62700.2 37.888 161 89 7 4 164 7 156 2.76e-28 111
Msa0481820 AT3G10490.2 37.805 164 91 6 3 165 26 179 4.17e-28 111
Msa0481820 AT3G44290.1 31.163 215 128 5 6 218 16 212 5.57e-28 109
Msa0481820 AT5G18270.2 36.196 163 95 3 3 165 20 173 6.78e-28 109
Msa0481820 AT1G32770.1 32.068 237 129 8 4 220 16 240 9.77e-28 109
Msa0481820 AT1G76420.1 39.286 168 79 7 4 165 22 172 1.10e-27 108
Msa0481820 AT3G04070.2 38.150 173 89 7 4 167 10 173 1.13e-27 108
Msa0481820 AT5G39610.1 34.409 186 108 6 3 188 19 190 1.17e-27 107
Msa0481820 AT5G53950.1 38.415 164 89 6 4 165 17 170 1.35e-27 109
Msa0481820 AT1G54330.1 36.810 163 90 4 3 165 5 154 1.42e-27 107
Msa0481820 AT5G18270.1 36.196 163 95 3 3 165 20 173 1.47e-27 108
Msa0481820 AT1G12260.2 35.185 162 94 6 3 164 6 156 1.61e-27 108
Msa0481820 AT1G12260.1 35.185 162 94 6 3 164 6 156 3.17e-27 108
Msa0481820 AT1G79580.3 36.905 168 95 5 4 171 17 173 1.13e-26 106
Msa0481820 AT1G79580.5 36.905 168 95 5 4 171 17 173 1.13e-26 106
Msa0481820 AT1G79580.4 36.905 168 95 5 4 171 17 173 1.13e-26 106
Msa0481820 AT1G79580.2 36.905 168 95 5 4 171 17 173 1.13e-26 106
Msa0481820 AT1G79580.1 36.905 168 95 5 4 171 17 173 1.13e-26 106
Msa0481820 AT3G61910.1 31.551 187 116 4 4 182 11 193 2.00e-26 105
Msa0481820 AT5G64060.1 34.545 165 94 6 3 165 5 157 3.31e-26 105
Msa0481820 AT3G04070.1 36.702 188 87 8 4 167 10 189 3.94e-26 105
Msa0481820 AT4G01550.1 38.272 162 85 5 7 166 7 155 8.26e-26 105
Msa0481820 AT2G46770.1 34.078 179 102 5 4 172 16 188 1.69e-25 103
Msa0481820 AT3G10500.1 35.152 165 93 7 3 165 8 160 5.09e-25 103
Msa0481820 AT3G12977.1 35.714 168 87 7 3 165 17 168 5.91e-25 100
Msa0481820 AT3G10480.3 32.143 196 91 7 3 165 26 212 1.11e-24 102
Msa0481820 AT3G29035.1 35.000 160 94 5 3 162 23 172 1.79e-24 99.8
Msa0481820 AT5G04410.1 36.196 163 94 6 3 165 8 160 1.91e-24 102
Msa0481820 AT1G33280.1 34.731 167 97 4 4 170 8 162 2.07e-24 99.4
Msa0481820 AT4G28530.1 30.899 178 95 5 4 166 10 174 2.85e-24 99.8
Msa0481820 AT5G09330.5 33.951 162 95 6 4 164 6 156 3.38e-24 101
Msa0481820 AT5G09330.2 33.951 162 95 6 4 164 6 156 3.38e-24 101
Msa0481820 AT5G09330.4 33.951 162 95 6 4 164 6 156 3.38e-24 101
Msa0481820 AT5G09330.3 33.951 162 95 6 4 164 6 156 3.38e-24 101
Msa0481820 AT5G09330.1 33.951 162 95 6 4 164 6 156 3.38e-24 101
Msa0481820 AT4G10350.1 34.320 169 102 4 4 172 9 168 5.08e-24 99.0
Msa0481820 AT1G32870.2 37.654 162 91 6 4 165 10 161 5.45e-24 100
Msa0481820 AT1G32870.1 37.654 162 91 6 4 165 10 161 5.95e-24 100
Msa0481820 AT1G56010.2 32.335 167 95 5 4 165 19 172 5.96e-24 98.6
Msa0481820 AT5G13180.1 35.366 164 90 6 4 166 14 162 6.09e-24 97.1
Msa0481820 AT2G33480.2 33.742 163 91 5 4 166 15 160 6.95e-24 97.4
Msa0481820 AT1G32870.3 37.654 162 91 6 4 165 46 197 8.03e-24 100
Msa0481820 AT2G33480.1 33.129 163 94 5 4 166 15 162 2.37e-23 95.9
Msa0481820 AT1G52880.1 37.195 164 91 5 8 165 21 178 1.07e-22 95.1
Msa0481820 AT5G04395.1 37.086 151 80 5 3 141 27 174 6.92e-22 90.1
Msa0481820 AT4G01520.1 31.325 166 98 5 5 167 5 157 1.49e-21 91.7
Msa0481820 AT3G56530.1 32.704 159 96 3 4 162 52 199 6.39e-21 90.1
Msa0481820 AT3G55210.1 31.176 170 93 5 4 162 11 167 6.43e-21 89.7
Msa0481820 AT4G01540.3 32.317 164 95 5 7 167 7 157 8.83e-21 90.9
Msa0481820 AT4G01540.4 32.317 164 95 5 7 167 7 157 1.06e-20 90.5
Msa0481820 AT4G01540.2 32.317 164 95 5 7 167 7 157 1.11e-20 90.9
Msa0481820 AT4G01540.1 32.317 164 95 5 7 167 7 157 1.15e-20 90.9
Msa0481820 AT5G61430.2 40.196 102 57 2 64 165 7 104 2.72e-20 87.8
Msa0481820 AT3G04420.2 31.098 164 99 5 1 164 1 150 1.41e-18 83.6
Msa0481820 AT3G04420.1 35.294 136 84 4 1 136 1 132 1.90e-18 83.6
Msa0481820 AT5G64530.1 33.824 136 65 7 3 134 2 116 1.17e-17 79.0
Msa0481820 AT1G56010.1 37.255 102 61 2 64 165 7 105 1.21e-17 80.1
Msa0481820 AT5G64530.2 33.824 136 65 7 3 134 2 116 1.26e-17 77.8
Msa0481820 AT1G01010.1 30.366 191 109 7 7 187 6 182 3.23e-17 80.9
Msa0481820 AT3G12977.2 37.255 102 59 2 64 165 19 115 5.49e-17 77.8
Msa0481820 AT1G02230.1 33.750 160 88 7 5 161 4 148 1.89e-16 78.2
Msa0481820 AT1G02250.1 32.919 161 88 8 5 161 4 148 2.96e-16 77.8
Msa0481820 AT4G10350.2 35.185 108 64 2 65 172 20 121 1.01e-15 75.5
Msa0481820 AT3G10490.4 41.463 82 43 2 84 165 3 79 3.29e-15 74.7
Msa0481820 AT3G10490.3 41.463 82 43 2 84 165 3 79 3.29e-15 74.7
Msa0481820 AT2G18060.2 45.455 77 34 3 88 164 2 70 8.20e-15 72.8
Msa0481820 AT2G43000.2 38.384 99 56 2 81 179 11 104 9.52e-15 71.2
Msa0481820 AT2G33480.3 35.294 102 56 3 67 166 12 105 2.77e-14 70.1
Msa0481820 AT1G02220.1 27.389 157 98 5 5 161 4 144 4.33e-13 68.6
Msa0481820 AT3G04430.1 35.514 107 64 3 10 116 6 107 2.08e-12 64.7
Msa0481820 AT5G14000.2 31.343 134 79 5 4 134 15 138 7.70e-12 62.4
Msa0481820 AT5G22290.2 53.571 56 23 2 89 142 2 56 8.06e-12 63.9
Msa0481820 AT5G14000.1 31.343 134 79 5 4 134 15 138 1.20e-11 62.8

Find 66 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGCAAGTTGAATCTTTC+TGG 0.167753 3_3:+88199862 None:intergenic
GAGCAAGTGGATTGGTTCTT+AGG 0.188696 3_3:-88199699 Msa0481820:CDS
CTCACTTCACTTTCTTGCCT+TGG 0.279048 3_3:+88200686 None:intergenic
AAGAGGATGTTTCATCTAAC+TGG 0.287039 3_3:+88200486 None:intergenic
TCTTCAGATAATCGCATCAT+TGG 0.352302 3_3:-88200593 Msa0481820:CDS
TTGGAAAATGAACGAGTATA+AGG 0.364384 3_3:-88200513 Msa0481820:CDS
TCTGAAGAATAAACATGATT+AGG 0.369085 3_3:+88200608 None:intergenic
TTATGATGCTTTGTTGGATT+GGG 0.384703 3_3:-88199721 Msa0481820:CDS
ATTATGATGCTTTGTTGGAT+TGG 0.386486 3_3:-88199722 Msa0481820:CDS
TGCTGATTATGATGCTTTGT+TGG 0.395773 3_3:-88199727 Msa0481820:CDS
TATCTTCACAATATGCTTGA+AGG 0.404066 3_3:-88201241 Msa0481820:CDS
CGTAACACATAATATATGTT+TGG 0.406239 3_3:+88199478 None:intergenic
CATTGGAGTGAAAAGAACTA+TGG 0.407082 3_3:-88200576 Msa0481820:CDS
ATGATGACAAATATTTGTTT+CGG 0.416964 3_3:-88199574 Msa0481820:three_prime_UTR
CCAGTGTTGGTGAGACGCTT+TGG 0.428965 3_3:+88200653 None:intergenic
CATAATCAGCAATATCCATT+TGG 0.446503 3_3:+88199739 None:intergenic
GAAATAAGCTCTTCTTCTGT+AGG 0.449332 3_3:+88201268 None:intergenic
ACATGGGTTGTAACCTTCCT+TGG 0.454170 3_3:+88199903 None:intergenic
TATATTAACGACTGGTATAA+CGG 0.454373 3_3:+88201195 None:intergenic
AGCAAGTGGATTGGTTCTTA+GGG 0.460177 3_3:-88199698 Msa0481820:CDS
TCTATAGAGGAAGAGCTCTC+TGG 0.482763 3_3:+88199798 None:intergenic
TTTATACGTGGGAGTTGTGA+TGG 0.487627 3_3:+88201160 None:intergenic
TAGGGTCGGAGCCATAATAT+AGG 0.495123 3_3:-88199680 Msa0481820:exon
CAAATGGAAAGAAAACTGAT+TGG 0.496748 3_3:-88200532 Msa0481820:CDS
CCAAAGCGTCTCACCAACAC+TGG 0.504150 3_3:-88200653 Msa0481820:CDS
CAAACATATATTATGTGTTA+CGG 0.506017 3_3:-88199477 None:intergenic
AGCTTCTCCAACCTCTTGTG+AGG 0.507371 3_3:+88199764 None:intergenic
GTCTCACCAACACTGGGTAC+TGG 0.511931 3_3:-88200646 Msa0481820:CDS
TTCAAACAAAGTAGCTCCTA+AGG 0.519978 3_3:-88200465 Msa0481820:intron
AGGAGCTACTTTGTTTGAAG+AGG 0.523871 3_3:+88200469 None:intergenic
ATAAACATGATTAGGAGATC+CGG 0.525220 3_3:+88200616 None:intergenic
TACGTGCAAGATTAAATTTG+TGG 0.528665 3_3:-88199645 Msa0481820:three_prime_UTR
GGTTGGAGAAGCTAGCCAAA+TGG 0.532147 3_3:-88199754 Msa0481820:CDS
GGCTTTCCAGTACCCAGTGT+TGG 0.539246 3_3:+88200640 None:intergenic
AAATAAGCTCTTCTTCTGTA+GGG 0.541701 3_3:+88201269 None:intergenic
TATAGTGGAAGAGCTCCAAA+TGG 0.542069 3_3:-88200548 Msa0481820:CDS
GCTTCTCCAACCTCTTGTGA+GGG 0.545254 3_3:+88199765 None:intergenic
TGGATTGGGAGCAAGTGGAT+TGG 0.559258 3_3:-88199707 Msa0481820:CDS
GGGTTGAACATGGTCTATAG+AGG 0.566952 3_3:+88199785 None:intergenic
TAATCGTATATATTAACGAC+TGG 0.569424 3_3:+88201187 None:intergenic
AGTGGATTGGTTCTTAGGGT+CGG 0.569927 3_3:-88199694 Msa0481820:CDS
TGCAAGATTAAATTTGTGGT+GGG 0.570439 3_3:-88199641 Msa0481820:three_prime_UTR
GTTCAACCCTCACAAGAGGT+TGG 0.570806 3_3:-88199771 Msa0481820:CDS
GTGCAAGATTAAATTTGTGG+TGG 0.572834 3_3:-88199642 Msa0481820:three_prime_UTR
TGGGTTGTAACCTTCCTTGG+TGG 0.577447 3_3:+88199906 None:intergenic
CCTCTTGTGAGGGTTGAACA+TGG 0.579803 3_3:+88199775 None:intergenic
GTTGTAACCTTCCTTGGTGG+TGG 0.584797 3_3:+88199909 None:intergenic
TAGACGACCACCACCAAGGA+AGG 0.610436 3_3:-88199916 Msa0481820:CDS
CCATGTTCAACCCTCACAAG+AGG 0.611064 3_3:-88199775 Msa0481820:CDS
CAAGAAAGTGAAGTGAGAGG+AGG 0.612857 3_3:-88200680 Msa0481820:CDS
ACATGATGTTCAAATCTCGA+TGG 0.619431 3_3:-88199841 Msa0481820:CDS
CAAAGCGTCTCACCAACACT+GGG 0.625021 3_3:-88200652 Msa0481820:CDS
GGATGTTTCATCTAACTGGA+TGG 0.629602 3_3:+88200490 None:intergenic
ACTGGGTACTGGAAAGCCAC+CGG 0.631430 3_3:-88200635 Msa0481820:CDS
GATATTGTTAAACTCATAGT+CGG 0.634395 3_3:-88199502 Msa0481820:three_prime_UTR
TTTGTTGGATTGGGAGCAAG+TGG 0.640642 3_3:-88199712 Msa0481820:CDS
GTAGGGTAGAAACGATAACC+TGG 0.640687 3_3:+88201286 None:intergenic
AGTATGGACAATATGCCACC+AGG 0.650912 3_3:-88201304 Msa0481820:CDS
GTATGAGAGACACGGAACAA+TGG 0.656880 3_3:-88200721 Msa0481820:CDS
CTTAAGTTTCAACAAAACCA+CGG 0.659449 3_3:-88199534 Msa0481820:three_prime_UTR
AGAGGCAAGTATGAGAGACA+CGG 0.662506 3_3:-88200729 Msa0481820:CDS
AGGCAAGAAAGTGAAGTGAG+AGG 0.663868 3_3:-88200683 Msa0481820:CDS
AACATGATTAGGAGATCCGG+TGG 0.670351 3_3:+88200619 None:intergenic
ACAATATCACGTTAACACCG+TGG 0.679057 3_3:+88199517 None:intergenic
TTGATAGACGACCACCACCA+AGG 0.683488 3_3:-88199920 Msa0481820:CDS
GGGTAGAAACGATAACCTGG+TGG 0.760431 3_3:+88201289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAGTTAATTTGTTTTA+CGG - chr3_3:88200554-88200573 Msa0481820:CDS 10.0%
!!! AAAGAATATAAAATTTTTAC+AGG - chr3_3:88200712-88200731 Msa0481820:CDS 10.0%
!!! TTTGATATTGATTATTTAAT+TGG - chr3_3:88200794-88200813 Msa0481820:intron 10.0%
!!! ATTTAAGTTAATTTGTTTTA+CGG - chr3_3:88200554-88200573 Msa0481820:CDS 10.0%
!!! AAAGAATATAAAATTTTTAC+AGG - chr3_3:88200712-88200731 Msa0481820:CDS 10.0%
!!! TTTGATATTGATTATTTAAT+TGG - chr3_3:88200794-88200813 Msa0481820:intron 10.0%
!! TACTAAAAAAGAAAAAAGTA+TGG - chr3_3:88199481-88199500 Msa0481820:three_prime_UTR 15.0%
!! TAACTCAAAAACAAAAAAAA+AGG - chr3_3:88199832-88199851 Msa0481820:CDS 15.0%
!! ATTTACAATATTGCAATATA+TGG + chr3_3:88199999-88200018 None:intergenic 15.0%
!!! TTTAAGTTAATTTGTTTTAC+GGG - chr3_3:88200555-88200574 Msa0481820:CDS 15.0%
!!! TATCTTTATTCTTTTATTTG+AGG - chr3_3:88200624-88200643 Msa0481820:CDS 15.0%
!!! TACTTTTTTCTTTTTTAGTA+AGG + chr3_3:88199481-88199500 None:intergenic 15.0%
!! TACTAAAAAAGAAAAAAGTA+TGG - chr3_3:88199481-88199500 Msa0481820:three_prime_UTR 15.0%
!! TAACTCAAAAACAAAAAAAA+AGG - chr3_3:88199832-88199851 Msa0481820:CDS 15.0%
!! ATTTACAATATTGCAATATA+TGG + chr3_3:88199999-88200018 None:intergenic 15.0%
!!! TTTAAGTTAATTTGTTTTAC+GGG - chr3_3:88200555-88200574 Msa0481820:CDS 15.0%
!!! TATCTTTATTCTTTTATTTG+AGG - chr3_3:88200624-88200643 Msa0481820:CDS 15.0%
!! TGTTACAATAAGATATTACT+AGG - chr3_3:88199794-88199813 Msa0481820:CDS 20.0%
!!! TTGCAATATATGGATTTTTT+CGG + chr3_3:88199989-88200008 None:intergenic 20.0%
!! AATTCAAACCAATATAAATC+AGG + chr3_3:88200436-88200455 None:intergenic 20.0%
!!! TTAAGTTAATTTGTTTTACG+GGG - chr3_3:88200556-88200575 Msa0481820:CDS 20.0%
!!! ATTAACCTTTTGATTAATAC+TGG - chr3_3:88200758-88200777 Msa0481820:intron 20.0%
!!! TCTAATTTTCTCCTATATTA+TGG + chr3_3:88201135-88201154 None:intergenic 20.0%
!! AATGACGAAAAAAAAATTTG+TGG - chr3_3:88201191-88201210 Msa0481820:CDS 20.0%
!! ATGATGACAAATATTTGTTT+CGG - chr3_3:88201227-88201246 Msa0481820:CDS 20.0%
!! TGTTACAATAAGATATTACT+AGG - chr3_3:88199794-88199813 Msa0481820:CDS 20.0%
!!! TTGCAATATATGGATTTTTT+CGG + chr3_3:88199989-88200008 None:intergenic 20.0%
!! AATTCAAACCAATATAAATC+AGG + chr3_3:88200436-88200455 None:intergenic 20.0%
!!! TTAAGTTAATTTGTTTTACG+GGG - chr3_3:88200556-88200575 Msa0481820:CDS 20.0%
!!! ATTAACCTTTTGATTAATAC+TGG - chr3_3:88200758-88200777 Msa0481820:intron 20.0%
!!! TCTAATTTTCTCCTATATTA+TGG + chr3_3:88201135-88201154 None:intergenic 20.0%
!! AATGACGAAAAAAAAATTTG+TGG - chr3_3:88201191-88201210 Msa0481820:CDS 20.0%
!! ATGATGACAAATATTTGTTT+CGG - chr3_3:88201227-88201246 Msa0481820:CDS 20.0%
! TATATTAACGACTGGTATAA+CGG + chr3_3:88199609-88199628 None:intergenic 25.0%
! TAATCGTATATATTAACGAC+TGG + chr3_3:88199617-88199636 None:intergenic 25.0%
! AATTGATAGATCTCTAACTT+TGG - chr3_3:88199735-88199754 Msa0481820:CDS 25.0%
!!! TGCAATATATGGATTTTTTC+GGG + chr3_3:88199988-88200007 None:intergenic 25.0%
!!! TATTGGTTTTCAGAAATTTC+AGG - chr3_3:88200049-88200068 Msa0481820:intron 25.0%
! TCTGAAGAATAAACATGATT+AGG + chr3_3:88200196-88200215 None:intergenic 25.0%
! GTATACAACCTGATTTATAT+TGG - chr3_3:88200425-88200444 Msa0481820:intron 25.0%
!! TATTTGAGGTTCATATTAGA+TGG - chr3_3:88200638-88200657 Msa0481820:CDS 25.0%
! ATTAGCCAGTATTAATCAAA+AGG + chr3_3:88200766-88200785 None:intergenic 25.0%
! TATTTAATTGGTTGCAGTTA+AGG - chr3_3:88200806-88200825 Msa0481820:intron 25.0%
!!! ACTTTGATTTTTTGTACACT+CGG + chr3_3:88200849-88200868 None:intergenic 25.0%
!! ACAAAAAATCAAAGTGCTTA+AGG - chr3_3:88200854-88200873 Msa0481820:intron 25.0%
!! CAAAAAATCAAAGTGCTTAA+GGG - chr3_3:88200855-88200874 Msa0481820:intron 25.0%
! GATATTGTTAAACTCATAGT+CGG - chr3_3:88201299-88201318 Msa0481820:CDS 25.0%
! TATATTAACGACTGGTATAA+CGG + chr3_3:88199609-88199628 None:intergenic 25.0%
! TAATCGTATATATTAACGAC+TGG + chr3_3:88199617-88199636 None:intergenic 25.0%
! AATTGATAGATCTCTAACTT+TGG - chr3_3:88199735-88199754 Msa0481820:CDS 25.0%
!!! TGCAATATATGGATTTTTTC+GGG + chr3_3:88199988-88200007 None:intergenic 25.0%
!!! TATTGGTTTTCAGAAATTTC+AGG - chr3_3:88200049-88200068 Msa0481820:intron 25.0%
! TCTGAAGAATAAACATGATT+AGG + chr3_3:88200196-88200215 None:intergenic 25.0%
! GTATACAACCTGATTTATAT+TGG - chr3_3:88200425-88200444 Msa0481820:intron 25.0%
!! TATTTGAGGTTCATATTAGA+TGG - chr3_3:88200638-88200657 Msa0481820:CDS 25.0%
! ATTAGCCAGTATTAATCAAA+AGG + chr3_3:88200766-88200785 None:intergenic 25.0%
! TATTTAATTGGTTGCAGTTA+AGG - chr3_3:88200806-88200825 Msa0481820:intron 25.0%
!!! ACTTTGATTTTTTGTACACT+CGG + chr3_3:88200849-88200868 None:intergenic 25.0%
!! ACAAAAAATCAAAGTGCTTA+AGG - chr3_3:88200854-88200873 Msa0481820:intron 25.0%
!! CAAAAAATCAAAGTGCTTAA+GGG - chr3_3:88200855-88200874 Msa0481820:intron 25.0%
! GATATTGTTAAACTCATAGT+CGG - chr3_3:88201299-88201318 Msa0481820:CDS 25.0%
AAATAAGCTCTTCTTCTGTA+GGG + chr3_3:88199535-88199554 None:intergenic 30.0%
TATCTTCACAATATGCTTGA+AGG - chr3_3:88199560-88199579 Msa0481820:three_prime_UTR 30.0%
TCATGGAAAGATTTATACGT+GGG + chr3_3:88199655-88199674 None:intergenic 30.0%
!! AATGGTTCTTTTTCATTCCA+AGG - chr3_3:88200098-88200117 Msa0481820:intron 30.0%
ATAAACATGATTAGGAGATC+CGG + chr3_3:88200188-88200207 None:intergenic 30.0%
! AGAACTATGGTTTTCTATAG+TGG - chr3_3:88200238-88200257 Msa0481820:intron 30.0%
! CAATCAGTTTTCTTTCCATT+TGG + chr3_3:88200271-88200290 None:intergenic 30.0%
CAAATGGAAAGAAAACTGAT+TGG - chr3_3:88200269-88200288 Msa0481820:intron 30.0%
TTGGAAAATGAACGAGTATA+AGG - chr3_3:88200288-88200307 Msa0481820:intron 30.0%
ATATGATATGTACGTACCTT+AGG + chr3_3:88200355-88200374 None:intergenic 30.0%
TATCATATGCATCTTGAACT+AGG - chr3_3:88200367-88200386 Msa0481820:intron 30.0%
ACCTTGAATTTCGTACATAT+TGG - chr3_3:88200471-88200490 Msa0481820:CDS 30.0%
ACCAATATGTACGAAATTCA+AGG + chr3_3:88200475-88200494 None:intergenic 30.0%
! TAATAAGGCGTGATTTTCAT+GGG - chr3_3:88200585-88200604 Msa0481820:CDS 30.0%
! GTGATTTTCATGGGAAAAAA+TGG - chr3_3:88200594-88200613 Msa0481820:CDS 30.0%
TATGATCCACGATATAAAAC+TGG + chr3_3:88200667-88200686 None:intergenic 30.0%
CATAATCAGCAATATCCATT+TGG + chr3_3:88201065-88201084 None:intergenic 30.0%
! ATTATGATGCTTTGTTGGAT+TGG - chr3_3:88201079-88201098 Msa0481820:intron 30.0%
! TTATGATGCTTTGTTGGATT+GGG - chr3_3:88201080-88201099 Msa0481820:intron 30.0%
TACGTGCAAGATTAAATTTG+TGG - chr3_3:88201156-88201175 Msa0481820:intron 30.0%
TGCAAGATTAAATTTGTGGT+GGG - chr3_3:88201160-88201179 Msa0481820:intron 30.0%
CTTAAGTTTCAACAAAACCA+CGG - chr3_3:88201267-88201286 Msa0481820:CDS 30.0%
AAATAAGCTCTTCTTCTGTA+GGG + chr3_3:88199535-88199554 None:intergenic 30.0%
TATCTTCACAATATGCTTGA+AGG - chr3_3:88199560-88199579 Msa0481820:three_prime_UTR 30.0%
TCATGGAAAGATTTATACGT+GGG + chr3_3:88199655-88199674 None:intergenic 30.0%
!! AATGGTTCTTTTTCATTCCA+AGG - chr3_3:88200098-88200117 Msa0481820:intron 30.0%
ATAAACATGATTAGGAGATC+CGG + chr3_3:88200188-88200207 None:intergenic 30.0%
! AGAACTATGGTTTTCTATAG+TGG - chr3_3:88200238-88200257 Msa0481820:intron 30.0%
! CAATCAGTTTTCTTTCCATT+TGG + chr3_3:88200271-88200290 None:intergenic 30.0%
CAAATGGAAAGAAAACTGAT+TGG - chr3_3:88200269-88200288 Msa0481820:intron 30.0%
TTGGAAAATGAACGAGTATA+AGG - chr3_3:88200288-88200307 Msa0481820:intron 30.0%
ATATGATATGTACGTACCTT+AGG + chr3_3:88200355-88200374 None:intergenic 30.0%
TATCATATGCATCTTGAACT+AGG - chr3_3:88200367-88200386 Msa0481820:intron 30.0%
ACCTTGAATTTCGTACATAT+TGG - chr3_3:88200471-88200490 Msa0481820:CDS 30.0%
ACCAATATGTACGAAATTCA+AGG + chr3_3:88200475-88200494 None:intergenic 30.0%
! TAATAAGGCGTGATTTTCAT+GGG - chr3_3:88200585-88200604 Msa0481820:CDS 30.0%
! GTGATTTTCATGGGAAAAAA+TGG - chr3_3:88200594-88200613 Msa0481820:CDS 30.0%
TATGATCCACGATATAAAAC+TGG + chr3_3:88200667-88200686 None:intergenic 30.0%
CATAATCAGCAATATCCATT+TGG + chr3_3:88201065-88201084 None:intergenic 30.0%
! ATTATGATGCTTTGTTGGAT+TGG - chr3_3:88201079-88201098 Msa0481820:intron 30.0%
! TTATGATGCTTTGTTGGATT+GGG - chr3_3:88201080-88201099 Msa0481820:intron 30.0%
TACGTGCAAGATTAAATTTG+TGG - chr3_3:88201156-88201175 Msa0481820:intron 30.0%
TGCAAGATTAAATTTGTGGT+GGG - chr3_3:88201160-88201179 Msa0481820:intron 30.0%
CTTAAGTTTCAACAAAACCA+CGG - chr3_3:88201267-88201286 Msa0481820:CDS 30.0%
GAAATAAGCTCTTCTTCTGT+AGG + chr3_3:88199536-88199555 None:intergenic 35.0%
GTCATGGAAAGATTTATACG+TGG + chr3_3:88199656-88199675 None:intergenic 35.0%
ACAATAACGTAGTCAAGTCA+TGG + chr3_3:88199672-88199691 None:intergenic 35.0%
! GTTTTCAGAAATTTCAGGAG+AGG - chr3_3:88200054-88200073 Msa0481820:intron 35.0%
TCTTCAGATAATCGCATCAT+TGG - chr3_3:88200208-88200227 Msa0481820:intron 35.0%
CATTGGAGTGAAAAGAACTA+TGG - chr3_3:88200225-88200244 Msa0481820:intron 35.0%
AAGAGGATGTTTCATCTAAC+TGG + chr3_3:88200318-88200337 None:intergenic 35.0%
TTCAAACAAAGTAGCTCCTA+AGG - chr3_3:88200336-88200355 Msa0481820:intron 35.0%
TTTACGGGGTCAATCTAATA+AGG - chr3_3:88200570-88200589 Msa0481820:CDS 35.0%
! CTAATAAGGCGTGATTTTCA+TGG - chr3_3:88200584-88200603 Msa0481820:CDS 35.0%
! TTTTCATGGGAAAAAATGGC+AGG - chr3_3:88200598-88200617 Msa0481820:CDS 35.0%
TTTCATGGGAAAAAATGGCA+GGG - chr3_3:88200599-88200618 Msa0481820:CDS 35.0%
!! TGGAAACCAGTTTTATATCG+TGG - chr3_3:88200658-88200677 Msa0481820:CDS 35.0%
! CTCTTGAGCATTTTGAACAT+GGG + chr3_3:88200917-88200936 None:intergenic 35.0%
ACATGATGTTCAAATCTCGA+TGG - chr3_3:88200960-88200979 Msa0481820:intron 35.0%
! TGCTGATTATGATGCTTTGT+TGG - chr3_3:88201074-88201093 Msa0481820:intron 35.0%
GTGCAAGATTAAATTTGTGG+TGG - chr3_3:88201159-88201178 Msa0481820:intron 35.0%
GAAATAAGCTCTTCTTCTGT+AGG + chr3_3:88199536-88199555 None:intergenic 35.0%
GTCATGGAAAGATTTATACG+TGG + chr3_3:88199656-88199675 None:intergenic 35.0%
ACAATAACGTAGTCAAGTCA+TGG + chr3_3:88199672-88199691 None:intergenic 35.0%
! GTTTTCAGAAATTTCAGGAG+AGG - chr3_3:88200054-88200073 Msa0481820:intron 35.0%
TCTTCAGATAATCGCATCAT+TGG - chr3_3:88200208-88200227 Msa0481820:intron 35.0%
CATTGGAGTGAAAAGAACTA+TGG - chr3_3:88200225-88200244 Msa0481820:intron 35.0%
AAGAGGATGTTTCATCTAAC+TGG + chr3_3:88200318-88200337 None:intergenic 35.0%
TTCAAACAAAGTAGCTCCTA+AGG - chr3_3:88200336-88200355 Msa0481820:intron 35.0%
TTTACGGGGTCAATCTAATA+AGG - chr3_3:88200570-88200589 Msa0481820:CDS 35.0%
! CTAATAAGGCGTGATTTTCA+TGG - chr3_3:88200584-88200603 Msa0481820:CDS 35.0%
! TTTTCATGGGAAAAAATGGC+AGG - chr3_3:88200598-88200617 Msa0481820:CDS 35.0%
TTTCATGGGAAAAAATGGCA+GGG - chr3_3:88200599-88200618 Msa0481820:CDS 35.0%
!! TGGAAACCAGTTTTATATCG+TGG - chr3_3:88200658-88200677 Msa0481820:CDS 35.0%
! CTCTTGAGCATTTTGAACAT+GGG + chr3_3:88200917-88200936 None:intergenic 35.0%
ACATGATGTTCAAATCTCGA+TGG - chr3_3:88200960-88200979 Msa0481820:intron 35.0%
! TGCTGATTATGATGCTTTGT+TGG - chr3_3:88201074-88201093 Msa0481820:intron 35.0%
GTGCAAGATTAAATTTGTGG+TGG - chr3_3:88201159-88201178 Msa0481820:intron 35.0%
TTTATACGTGGGAGTTGTGA+TGG + chr3_3:88199644-88199663 None:intergenic 40.0%
! TATAGTGGAAGAGCTCCAAA+TGG - chr3_3:88200253-88200272 Msa0481820:intron 40.0%
GGATGTTTCATCTAACTGGA+TGG + chr3_3:88200314-88200333 None:intergenic 40.0%
! AGGAGCTACTTTGTTTGAAG+AGG + chr3_3:88200335-88200354 None:intergenic 40.0%
! GCTCTTGAGCATTTTGAACA+TGG + chr3_3:88200918-88200937 None:intergenic 40.0%
! GTTCGCAAGTTGAATCTTTC+TGG + chr3_3:88200942-88200961 None:intergenic 40.0%
!! AGCAAGTGGATTGGTTCTTA+GGG - chr3_3:88201103-88201122 Msa0481820:intron 40.0%
ACAATATCACGTTAACACCG+TGG + chr3_3:88201287-88201306 None:intergenic 40.0%
TTTATACGTGGGAGTTGTGA+TGG + chr3_3:88199644-88199663 None:intergenic 40.0%
! TATAGTGGAAGAGCTCCAAA+TGG - chr3_3:88200253-88200272 Msa0481820:intron 40.0%
GGATGTTTCATCTAACTGGA+TGG + chr3_3:88200314-88200333 None:intergenic 40.0%
! AGGAGCTACTTTGTTTGAAG+AGG + chr3_3:88200335-88200354 None:intergenic 40.0%
! GCTCTTGAGCATTTTGAACA+TGG + chr3_3:88200918-88200937 None:intergenic 40.0%
! GTTCGCAAGTTGAATCTTTC+TGG + chr3_3:88200942-88200961 None:intergenic 40.0%
!! AGCAAGTGGATTGGTTCTTA+GGG - chr3_3:88201103-88201122 Msa0481820:intron 40.0%
ACAATATCACGTTAACACCG+TGG + chr3_3:88201287-88201306 None:intergenic 40.0%
AGTATGGACAATATGCCACC+AGG - chr3_3:88199497-88199516 Msa0481820:three_prime_UTR 45.0%
GTAGGGTAGAAACGATAACC+TGG + chr3_3:88199518-88199537 None:intergenic 45.0%
AGAGGCAAGTATGAGAGACA+CGG - chr3_3:88200072-88200091 Msa0481820:intron 45.0%
GTATGAGAGACACGGAACAA+TGG - chr3_3:88200080-88200099 Msa0481820:intron 45.0%
CTCACTTCACTTTCTTGCCT+TGG + chr3_3:88200118-88200137 None:intergenic 45.0%
AGGCAAGAAAGTGAAGTGAG+AGG - chr3_3:88200118-88200137 Msa0481820:intron 45.0%
CAAGAAAGTGAAGTGAGAGG+AGG - chr3_3:88200121-88200140 Msa0481820:intron 45.0%
AACATGATTAGGAGATCCGG+TGG + chr3_3:88200185-88200204 None:intergenic 45.0%
! ACATGGGTTGTAACCTTCCT+TGG + chr3_3:88200901-88200920 None:intergenic 45.0%
TCTATAGAGGAAGAGCTCTC+TGG + chr3_3:88201006-88201025 None:intergenic 45.0%
GGGTTGAACATGGTCTATAG+AGG + chr3_3:88201019-88201038 None:intergenic 45.0%
! TTTGTTGGATTGGGAGCAAG+TGG - chr3_3:88201089-88201108 Msa0481820:intron 45.0%
!! GAGCAAGTGGATTGGTTCTT+AGG - chr3_3:88201102-88201121 Msa0481820:intron 45.0%
!! AGTGGATTGGTTCTTAGGGT+CGG - chr3_3:88201107-88201126 Msa0481820:intron 45.0%
TAGGGTCGGAGCCATAATAT+AGG - chr3_3:88201121-88201140 Msa0481820:intron 45.0%
AGTATGGACAATATGCCACC+AGG - chr3_3:88199497-88199516 Msa0481820:three_prime_UTR 45.0%
GTAGGGTAGAAACGATAACC+TGG + chr3_3:88199518-88199537 None:intergenic 45.0%
AGAGGCAAGTATGAGAGACA+CGG - chr3_3:88200072-88200091 Msa0481820:intron 45.0%
GTATGAGAGACACGGAACAA+TGG - chr3_3:88200080-88200099 Msa0481820:intron 45.0%
CTCACTTCACTTTCTTGCCT+TGG + chr3_3:88200118-88200137 None:intergenic 45.0%
AGGCAAGAAAGTGAAGTGAG+AGG - chr3_3:88200118-88200137 Msa0481820:intron 45.0%
CAAGAAAGTGAAGTGAGAGG+AGG - chr3_3:88200121-88200140 Msa0481820:intron 45.0%
AACATGATTAGGAGATCCGG+TGG + chr3_3:88200185-88200204 None:intergenic 45.0%
! ACATGGGTTGTAACCTTCCT+TGG + chr3_3:88200901-88200920 None:intergenic 45.0%
TCTATAGAGGAAGAGCTCTC+TGG + chr3_3:88201006-88201025 None:intergenic 45.0%
GGGTTGAACATGGTCTATAG+AGG + chr3_3:88201019-88201038 None:intergenic 45.0%
! TTTGTTGGATTGGGAGCAAG+TGG - chr3_3:88201089-88201108 Msa0481820:intron 45.0%
!! GAGCAAGTGGATTGGTTCTT+AGG - chr3_3:88201102-88201121 Msa0481820:intron 45.0%
!! AGTGGATTGGTTCTTAGGGT+CGG - chr3_3:88201107-88201126 Msa0481820:intron 45.0%
TAGGGTCGGAGCCATAATAT+AGG - chr3_3:88201121-88201140 Msa0481820:intron 45.0%
!!! TTTTTTTCTTATAAAATTAT+TGG - chr3_3:88200032-88200051 Msa0481820:intron 5.0%
!!! TTTTTTTCTTATAAAATTAT+TGG - chr3_3:88200032-88200051 Msa0481820:intron 5.0%
GGGTAGAAACGATAACCTGG+TGG + chr3_3:88199515-88199534 None:intergenic 50.0%
! CAAAGCGTCTCACCAACACT+GGG - chr3_3:88200149-88200168 Msa0481820:intron 50.0%
TTGATAGACGACCACCACCA+AGG - chr3_3:88200881-88200900 Msa0481820:intron 50.0%
GTTGTAACCTTCCTTGGTGG+TGG + chr3_3:88200895-88200914 None:intergenic 50.0%
TGGGTTGTAACCTTCCTTGG+TGG + chr3_3:88200898-88200917 None:intergenic 50.0%
CCTCTTGTGAGGGTTGAACA+TGG + chr3_3:88201029-88201048 None:intergenic 50.0%
CCATGTTCAACCCTCACAAG+AGG - chr3_3:88201026-88201045 Msa0481820:intron 50.0%
GTTCAACCCTCACAAGAGGT+TGG - chr3_3:88201030-88201049 Msa0481820:intron 50.0%
GCTTCTCCAACCTCTTGTGA+GGG + chr3_3:88201039-88201058 None:intergenic 50.0%
AGCTTCTCCAACCTCTTGTG+AGG + chr3_3:88201040-88201059 None:intergenic 50.0%
GGTTGGAGAAGCTAGCCAAA+TGG - chr3_3:88201047-88201066 Msa0481820:intron 50.0%
! TGGATTGGGAGCAAGTGGAT+TGG - chr3_3:88201094-88201113 Msa0481820:intron 50.0%
GGGTAGAAACGATAACCTGG+TGG + chr3_3:88199515-88199534 None:intergenic 50.0%
! CAAAGCGTCTCACCAACACT+GGG - chr3_3:88200149-88200168 Msa0481820:intron 50.0%
TTGATAGACGACCACCACCA+AGG - chr3_3:88200881-88200900 Msa0481820:intron 50.0%
GTTGTAACCTTCCTTGGTGG+TGG + chr3_3:88200895-88200914 None:intergenic 50.0%
TGGGTTGTAACCTTCCTTGG+TGG + chr3_3:88200898-88200917 None:intergenic 50.0%
CCTCTTGTGAGGGTTGAACA+TGG + chr3_3:88201029-88201048 None:intergenic 50.0%
CCATGTTCAACCCTCACAAG+AGG - chr3_3:88201026-88201045 Msa0481820:intron 50.0%
GTTCAACCCTCACAAGAGGT+TGG - chr3_3:88201030-88201049 Msa0481820:intron 50.0%
GCTTCTCCAACCTCTTGTGA+GGG + chr3_3:88201039-88201058 None:intergenic 50.0%
AGCTTCTCCAACCTCTTGTG+AGG + chr3_3:88201040-88201059 None:intergenic 50.0%
GGTTGGAGAAGCTAGCCAAA+TGG - chr3_3:88201047-88201066 Msa0481820:intron 50.0%
! TGGATTGGGAGCAAGTGGAT+TGG - chr3_3:88201094-88201113 Msa0481820:intron 50.0%
!! CCAGTGTTGGTGAGACGCTT+TGG + chr3_3:88200151-88200170 None:intergenic 55.0%
! CCAAAGCGTCTCACCAACAC+TGG - chr3_3:88200148-88200167 Msa0481820:intron 55.0%
GTCTCACCAACACTGGGTAC+TGG - chr3_3:88200155-88200174 Msa0481820:intron 55.0%
GGCTTTCCAGTACCCAGTGT+TGG + chr3_3:88200164-88200183 None:intergenic 55.0%
!! ACTGGGTACTGGAAAGCCAC+CGG - chr3_3:88200166-88200185 Msa0481820:intron 55.0%
TAGACGACCACCACCAAGGA+AGG - chr3_3:88200885-88200904 Msa0481820:intron 55.0%
!! CCAGTGTTGGTGAGACGCTT+TGG + chr3_3:88200151-88200170 None:intergenic 55.0%
! CCAAAGCGTCTCACCAACAC+TGG - chr3_3:88200148-88200167 Msa0481820:intron 55.0%
GTCTCACCAACACTGGGTAC+TGG - chr3_3:88200155-88200174 Msa0481820:intron 55.0%
GGCTTTCCAGTACCCAGTGT+TGG + chr3_3:88200164-88200183 None:intergenic 55.0%
!! ACTGGGTACTGGAAAGCCAC+CGG - chr3_3:88200166-88200185 Msa0481820:intron 55.0%
TAGACGACCACCACCAAGGA+AGG - chr3_3:88200885-88200904 Msa0481820:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 88199479 88201344 88199479 ID=Msa0481820;Name=Msa0481820
chr3_3 mRNA 88199479 88201344 88199479 ID=Msa0481820-mRNA-1;Parent=Msa0481820;Name=Msa0481820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=21|1|0.66|1|1|1|3|207|255
chr3_3 exon 88199479 88200000 88199479 ID=Msa0481820-mRNA-1:exon:25669;Parent=Msa0481820-mRNA-1
chr3_3 exon 88200466 88200761 88200466 ID=Msa0481820-mRNA-1:exon:25668;Parent=Msa0481820-mRNA-1
chr3_3 exon 88201167 88201344 88201167 ID=Msa0481820-mRNA-1:exon:25667;Parent=Msa0481820-mRNA-1
chr3_3 five_prime_UTR 88201324 88201344 88201324 ID=Msa0481820-mRNA-1:five_prime_utr;Parent=Msa0481820-mRNA-1
chr3_3 CDS 88201167 88201323 88201167 ID=Msa0481820-mRNA-1:cds;Parent=Msa0481820-mRNA-1
chr3_3 CDS 88200466 88200761 88200466 ID=Msa0481820-mRNA-1:cds;Parent=Msa0481820-mRNA-1
chr3_3 CDS 88199686 88200000 88199686 ID=Msa0481820-mRNA-1:cds;Parent=Msa0481820-mRNA-1
chr3_3 three_prime_UTR 88199479 88199685 88199479 ID=Msa0481820-mRNA-1:three_prime_utr;Parent=Msa0481820-mRNA-1
Gene Sequence

>Msa0481820

ATGGACAATATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAAGAGCTTATTTCGTTCTATCTTCACAATATGCTTGAAGGAGAGAAAGAATACACGATTCGTACCGTTATACCAGTCGTTAATATATACGATTACAATCCATCACAACTCCCACAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAACAATGGTTCTTTTTCATTCCAAGGCAAGAAAGTGAAGTGAGAGGAGGAAGACCAAAGCGTCTCACCAACACTGGGTACTGGAAAGCCACCGGATCTCCTAATCATGTTTATTCTTCAGATAATCGCATCATTGGAGTGAAAAGAACTATGGTTTTCTATAGTGGAAGAGCTCCAAATGGAAAGAAAACTGATTGGAAAATGAACGAGTATAAGGCCATCCAGTTAGATGAAACATCCTCTTCAAACAAAGTAGCTCCTAAGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAAAAATCAAAGTGCTTAAGGGCATTTGATAGACGACCACCACCAAGGAAGGTTACAACCCATGTTCAAAATGCTCAAGAGCACCAGAAAGATTCAACTTGCGAACATGATGTTCAAATCTCGATGGACATAAGTGCAACAAACTCACCAGAGAGCTCTTCCTCTATAGACCATGTTCAACCCTCACAAGAGGTTGGAGAAGCTAGCCAAATGGATATTGCTGATTATGATGCTTTGTTGGATTGGGAGCAAGTGGATTGGTTCTTAGGGTCGGAGCCATAA
Protein sequence

>Msa0481820

MDNMPPGYRFYPTEEELISFYLHNMLEGEKEYTIRTVIPVVNIYDYNPSQLPQISGEASMRDTEQWFFFIPRQESEVRGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGVKRTMVFYSGRAPNGKKTDWKMNEYKAIQLDETSSSNKVAPKLRQEFSLCRVYKKSKCLRAFDRRPPPRKVTTHVQNAQEHQKDSTCEHDVQISMDISATNSPESSSSIDHVQPSQEVGEASQMDIADYDALLDWEQVDWFLGSEP*