Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482520 | AES91240.1 | 56.471 | 170 | 14 | 5 | 1 | 112 | 31 | 198 | 1.85e-43 | 161 |
| Msa0482520 | AES91240.1 | 96.721 | 61 | 2 | 0 | 112 | 172 | 441 | 501 | 2.70e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482520 | sp|D4Q9Z4|SGT2_SOYBN | 49.351 | 77 | 35 | 2 | 1 | 77 | 29 | 101 | 1.68e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482520 | G7JQX3 | 56.471 | 170 | 14 | 5 | 1 | 112 | 31 | 198 | 8.86e-44 | 161 |
| Msa0482520 | G7JQX3 | 96.721 | 61 | 2 | 0 | 112 | 172 | 441 | 501 | 1.29e-28 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0482520 | Msa1121490 | 0.804509 | 2.087365e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482520 | MtrunA17_Chr4g0060511 | 56.471 | 170 | 14 | 5 | 1 | 112 | 31 | 198 | 1.71e-47 | 161 |
| Msa0482520 | MtrunA17_Chr4g0060511 | 96.721 | 61 | 2 | 0 | 112 | 172 | 441 | 501 | 2.48e-32 | 120 |
| Msa0482520 | MtrunA17_Chr7g0235051 | 63.768 | 138 | 19 | 4 | 1 | 111 | 31 | 164 | 2.56e-46 | 157 |
| Msa0482520 | MtrunA17_Chr7g0235051 | 83.607 | 61 | 10 | 0 | 112 | 172 | 407 | 467 | 7.26e-21 | 88.6 |
| Msa0482520 | MtrunA17_Chr7g0243851 | 59.690 | 129 | 33 | 4 | 1 | 114 | 31 | 155 | 1.37e-41 | 144 |
| Msa0482520 | MtrunA17_Chr7g0243851 | 76.056 | 71 | 17 | 0 | 102 | 172 | 386 | 456 | 3.07e-27 | 106 |
| Msa0482520 | MtrunA17_Chr7g0243801 | 49.704 | 169 | 22 | 6 | 1 | 111 | 27 | 190 | 3.78e-39 | 139 |
| Msa0482520 | MtrunA17_Chr7g0243801 | 73.214 | 56 | 15 | 0 | 112 | 167 | 430 | 485 | 1.79e-20 | 87.4 |
| Msa0482520 | MtrunA17_Chr7g0243921 | 51.534 | 163 | 23 | 5 | 1 | 111 | 60 | 218 | 1.37e-38 | 132 |
| Msa0482520 | MtrunA17_Chr7g0243771 | 49.091 | 165 | 29 | 4 | 1 | 111 | 26 | 189 | 2.25e-38 | 136 |
| Msa0482520 | MtrunA17_Chr7g0243771 | 78.571 | 56 | 12 | 0 | 112 | 167 | 429 | 484 | 3.13e-22 | 92.4 |
| Msa0482520 | MtrunA17_Chr7g0243951 | 46.512 | 172 | 29 | 6 | 1 | 114 | 31 | 197 | 6.10e-36 | 130 |
| Msa0482520 | MtrunA17_Chr7g0243951 | 74.648 | 71 | 18 | 0 | 102 | 172 | 427 | 497 | 5.25e-26 | 103 |
| Msa0482520 | MtrunA17_Chr7g0243861 | 39.189 | 222 | 61 | 8 | 1 | 164 | 34 | 239 | 4.92e-34 | 125 |
| Msa0482520 | MtrunA17_Chr7g0243861 | 80.328 | 61 | 12 | 0 | 112 | 172 | 441 | 501 | 1.54e-25 | 101 |
| Msa0482520 | MtrunA17_Chr7g0243631 | 41.395 | 215 | 54 | 6 | 1 | 160 | 33 | 230 | 5.51e-34 | 125 |
| Msa0482520 | MtrunA17_Chr7g0243631 | 85.246 | 61 | 9 | 0 | 112 | 172 | 440 | 500 | 6.89e-28 | 108 |
| Msa0482520 | MtrunA17_Chr7g0243681 | 41.743 | 218 | 49 | 8 | 1 | 160 | 31 | 228 | 3.32e-33 | 122 |
| Msa0482520 | MtrunA17_Chr7g0243681 | 75.000 | 60 | 15 | 0 | 112 | 171 | 433 | 492 | 1.61e-22 | 93.2 |
| Msa0482520 | MtrunA17_Chr7g0243761 | 46.199 | 171 | 31 | 6 | 1 | 114 | 31 | 197 | 1.16e-32 | 120 |
| Msa0482520 | MtrunA17_Chr7g0243761 | 88.235 | 34 | 4 | 0 | 139 | 172 | 435 | 468 | 8.44e-13 | 65.5 |
| Msa0482520 | MtrunA17_Chr7g0243931 | 43.275 | 171 | 36 | 5 | 1 | 114 | 37 | 203 | 5.48e-31 | 117 |
| Msa0482520 | MtrunA17_Chr7g0243931 | 75.410 | 61 | 15 | 0 | 112 | 172 | 444 | 504 | 2.54e-23 | 95.5 |
| Msa0482520 | MtrunA17_Chr7g0243871 | 37.615 | 218 | 58 | 7 | 1 | 160 | 29 | 226 | 1.88e-30 | 115 |
| Msa0482520 | MtrunA17_Chr7g0243871 | 60.714 | 56 | 22 | 0 | 112 | 167 | 426 | 481 | 7.08e-16 | 74.3 |
| Msa0482520 | MtrunA17_Chr7g0243811 | 37.441 | 211 | 61 | 5 | 1 | 159 | 9 | 200 | 2.18e-29 | 111 |
| Msa0482520 | MtrunA17_Chr7g0243781 | 37.788 | 217 | 57 | 6 | 1 | 159 | 29 | 225 | 1.64e-28 | 109 |
| Msa0482520 | MtrunA17_Chr7g0243781 | 58.929 | 56 | 23 | 0 | 112 | 167 | 429 | 484 | 1.41e-13 | 67.8 |
| Msa0482520 | MtrunA17_Chr7g0243711 | 83.607 | 61 | 10 | 0 | 112 | 172 | 270 | 330 | 9.84e-27 | 103 |
| Msa0482520 | MtrunA17_Chr7g0243711 | 88.000 | 50 | 5 | 1 | 1 | 50 | 31 | 79 | 6.58e-22 | 90.1 |
| Msa0482520 | MtrunA17_Chr6g0463891 | 35.294 | 170 | 48 | 5 | 1 | 112 | 32 | 197 | 4.24e-19 | 83.6 |
| Msa0482520 | MtrunA17_Chr5g0416741 | 33.333 | 168 | 51 | 5 | 1 | 111 | 33 | 196 | 1.22e-17 | 79.3 |
| Msa0482520 | MtrunA17_Chr5g0401851 | 48.052 | 77 | 36 | 2 | 1 | 77 | 30 | 102 | 6.38e-14 | 68.6 |
| Msa0482520 | MtrunA17_Chr8g0355221 | 32.544 | 169 | 50 | 8 | 1 | 111 | 35 | 197 | 1.27e-13 | 67.8 |
| Msa0482520 | MtrunA17_Chr4g0044481 | 30.198 | 202 | 96 | 7 | 1 | 171 | 47 | 234 | 4.04e-12 | 63.5 |
| Msa0482520 | MtrunA17_Chr5g0416821 | 58.824 | 51 | 20 | 1 | 1 | 51 | 34 | 83 | 8.68e-12 | 62.4 |
| Msa0482520 | MtrunA17_Chr8g0374931 | 43.836 | 73 | 38 | 1 | 96 | 165 | 416 | 488 | 2.00e-11 | 61.2 |
| Msa0482520 | MtrunA17_Chr7g0231651 | 58.000 | 50 | 20 | 1 | 2 | 51 | 35 | 83 | 5.83e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTGAAGTCACTGTCTA+TGG | 0.302994 | 3_3:-89463371 | None:intergenic |
| AGTCACTGTCTATGGATTCT+TGG | 0.318753 | 3_3:-89463363 | None:intergenic |
| TGCTTTCTCACCAAGTGCTT+TGG | 0.319430 | 3_3:-89464599 | None:intergenic |
| ACCTTCCTCTATAGTCCTCT+TGG | 0.387794 | 3_3:-89464518 | None:intergenic |
| CCGTCTGCAGCTTCGAGATT+GGG | 0.414860 | 3_3:+89463778 | Msa0482520:CDS |
| GCCGTCTGCAGCTTCGAGAT+TGG | 0.436285 | 3_3:+89463777 | Msa0482520:CDS |
| ATAGACAGTGACTTCAATTC+AGG | 0.455147 | 3_3:+89463373 | Msa0482520:CDS |
| GGAAGACCAACTTGAGATGA+AGG | 0.474191 | 3_3:-89463427 | None:intergenic |
| CAGTTCCCTTCATCTCAAGT+TGG | 0.480113 | 3_3:+89463421 | Msa0482520:CDS |
| AATGTCAAAGATGTTAAAGC+TGG | 0.486509 | 3_3:+89463463 | Msa0482520:CDS |
| TCTCAAGTTGGTCTTCCTGA+TGG | 0.496816 | 3_3:+89463433 | Msa0482520:CDS |
| TTCTTGGAATGTTGAAGCAT+TGG | 0.498557 | 3_3:-89463347 | None:intergenic |
| CTGCAGACGGCTCATCTCAA+TGG | 0.517495 | 3_3:-89463765 | None:intergenic |
| CGGCTCATCTCAATGGTATG+AGG | 0.543444 | 3_3:-89463758 | None:intergenic |
| TGGACACTCTTACAACAACT+TGG | 0.544408 | 3_3:+89464540 | Msa0482520:CDS |
| ATGCTTGGTAAAATCAGTCA+TGG | 0.566239 | 3_3:+89463499 | Msa0482520:CDS |
| TGCTTCCAAGAGGACTATAG+AGG | 0.566921 | 3_3:+89464513 | Msa0482520:CDS |
| GGAACATCCTCAGAAATGCT+TGG | 0.571059 | 3_3:+89463484 | Msa0482520:CDS |
| TTGAAGAAATCCAAAGCACT+TGG | 0.578175 | 3_3:+89464589 | Msa0482520:CDS |
| GCAAGACTATTTGCAAAGCA+TGG | 0.580914 | 3_3:+89463292 | None:intergenic |
| TCAATGGTATGAGGCAAACA+AGG | 0.592567 | 3_3:-89463749 | None:intergenic |
| TCAGAAACTAAATGATCATG+AGG | 0.608885 | 3_3:-89463707 | None:intergenic |
| CCCAATCTCGAAGCTGCAGA+CGG | 0.628607 | 3_3:-89463778 | None:intergenic |
| TCCAAGAGGACTATAGAGGA+AGG | 0.633900 | 3_3:+89464517 | Msa0482520:CDS |
| AAGAGGACTATAGAGGAAGG+TGG | 0.653780 | 3_3:+89464520 | Msa0482520:CDS |
| GAAGACCAACTTGAGATGAA+GGG | 0.656818 | 3_3:-89463426 | None:intergenic |
| GGCATGTGTAGTGATGATGA+TGG | 0.692450 | 3_3:-89463326 | None:intergenic |
| AGTTTGGCGATGCTTCCAAG+AGG | 0.701016 | 3_3:+89464503 | Msa0482520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATCATATGGAATT+GGG | + | chr3_3:89464211-89464230 | Msa0482520:intron | 15.0% |
| !! | TATATATATCATATGGAATT+GGG | + | chr3_3:89464211-89464230 | Msa0482520:intron | 15.0% |
| !!! | TTCAAAAATTGGTTCAAAAT+AGG | - | chr3_3:89463828-89463847 | None:intergenic | 20.0% |
| !!! | TTTTGAACCAATTTTTGAAT+CGG | + | chr3_3:89463829-89463848 | Msa0482520:intron | 20.0% |
| !! | AAACTTAGTAAAACTACAAT+GGG | + | chr3_3:89463901-89463920 | Msa0482520:intron | 20.0% |
| !! | CTATATATATCATATGGAAT+TGG | + | chr3_3:89464210-89464229 | Msa0482520:intron | 20.0% |
| !!! | TTCAAAAATTGGTTCAAAAT+AGG | - | chr3_3:89463828-89463847 | None:intergenic | 20.0% |
| !!! | TTTTGAACCAATTTTTGAAT+CGG | + | chr3_3:89463829-89463848 | Msa0482520:intron | 20.0% |
| !! | AAACTTAGTAAAACTACAAT+GGG | + | chr3_3:89463901-89463920 | Msa0482520:intron | 20.0% |
| !! | CTATATATATCATATGGAAT+TGG | + | chr3_3:89464210-89464229 | Msa0482520:intron | 20.0% |
| ! | AACAAAATAACATGCACAAT+TGG | - | chr3_3:89463675-89463694 | None:intergenic | 25.0% |
| ! | GAAACTTAGTAAAACTACAA+TGG | + | chr3_3:89463900-89463919 | Msa0482520:intron | 25.0% |
| ! | AACTTAGTAAAACTACAATG+GGG | + | chr3_3:89463902-89463921 | Msa0482520:intron | 25.0% |
| !! | ATTTTATCTGCAAGATTTTG+AGG | + | chr3_3:89464162-89464181 | Msa0482520:intron | 25.0% |
| !!! | TTGTTGATGTTTTGAAGATA+GGG | + | chr3_3:89464385-89464404 | Msa0482520:intron | 25.0% |
| ! | AACAAAATAACATGCACAAT+TGG | - | chr3_3:89463675-89463694 | None:intergenic | 25.0% |
| ! | GAAACTTAGTAAAACTACAA+TGG | + | chr3_3:89463900-89463919 | Msa0482520:intron | 25.0% |
| ! | AACTTAGTAAAACTACAATG+GGG | + | chr3_3:89463902-89463921 | Msa0482520:intron | 25.0% |
| !! | ATTTTATCTGCAAGATTTTG+AGG | + | chr3_3:89464162-89464181 | Msa0482520:intron | 25.0% |
| !!! | TTGTTGATGTTTTGAAGATA+GGG | + | chr3_3:89464385-89464404 | Msa0482520:intron | 25.0% |
| ! | TTGACATTTTCAATTCCATC+AGG | - | chr3_3:89463451-89463470 | None:intergenic | 30.0% |
| AATGTCAAAGATGTTAAAGC+TGG | + | chr3_3:89463463-89463482 | Msa0482520:CDS | 30.0% | |
| TCTTGAAACATTACCTCAAT+AGG | - | chr3_3:89463545-89463564 | None:intergenic | 30.0% | |
| ATATCAGTGACTATACAATC+TGG | - | chr3_3:89463575-89463594 | None:intergenic | 30.0% | |
| TCAGAAACTAAATGATCATG+AGG | - | chr3_3:89463710-89463729 | None:intergenic | 30.0% | |
| AAGAGACAGAATTGCTAAAT+TGG | + | chr3_3:89464022-89464041 | Msa0482520:intron | 30.0% | |
| ! | TCTGTCTTGTATGTAAGTTT+TGG | + | chr3_3:89464066-89464085 | Msa0482520:intron | 30.0% |
| CAAGGGCTATATATATCATA+TGG | + | chr3_3:89464204-89464223 | Msa0482520:intron | 30.0% | |
| TAAAATTGTTCGGCAAACAT+TGG | - | chr3_3:89464351-89464370 | None:intergenic | 30.0% | |
| CCTCTCATTGTAAAATTGTT+CGG | - | chr3_3:89464361-89464380 | None:intergenic | 30.0% | |
| !!! | CTTGTTGATGTTTTGAAGAT+AGG | + | chr3_3:89464384-89464403 | Msa0482520:intron | 30.0% |
| !!! | TGTTGATGTTTTGAAGATAG+GGG | + | chr3_3:89464386-89464405 | Msa0482520:intron | 30.0% |
| AGAATGAGAGCAAAAAAGTT+TGG | + | chr3_3:89464487-89464506 | Msa0482520:CDS | 30.0% | |
| ! | TTGACATTTTCAATTCCATC+AGG | - | chr3_3:89463451-89463470 | None:intergenic | 30.0% |
| AATGTCAAAGATGTTAAAGC+TGG | + | chr3_3:89463463-89463482 | Msa0482520:CDS | 30.0% | |
| TCTTGAAACATTACCTCAAT+AGG | - | chr3_3:89463545-89463564 | None:intergenic | 30.0% | |
| ATATCAGTGACTATACAATC+TGG | - | chr3_3:89463575-89463594 | None:intergenic | 30.0% | |
| TCAGAAACTAAATGATCATG+AGG | - | chr3_3:89463710-89463729 | None:intergenic | 30.0% | |
| AAGAGACAGAATTGCTAAAT+TGG | + | chr3_3:89464022-89464041 | Msa0482520:intron | 30.0% | |
| ! | TCTGTCTTGTATGTAAGTTT+TGG | + | chr3_3:89464066-89464085 | Msa0482520:intron | 30.0% |
| CAAGGGCTATATATATCATA+TGG | + | chr3_3:89464204-89464223 | Msa0482520:intron | 30.0% | |
| TAAAATTGTTCGGCAAACAT+TGG | - | chr3_3:89464351-89464370 | None:intergenic | 30.0% | |
| CCTCTCATTGTAAAATTGTT+CGG | - | chr3_3:89464361-89464380 | None:intergenic | 30.0% | |
| !!! | CTTGTTGATGTTTTGAAGAT+AGG | + | chr3_3:89464384-89464403 | Msa0482520:intron | 30.0% |
| !!! | TGTTGATGTTTTGAAGATAG+GGG | + | chr3_3:89464386-89464405 | Msa0482520:intron | 30.0% |
| AGAATGAGAGCAAAAAAGTT+TGG | + | chr3_3:89464487-89464506 | Msa0482520:CDS | 30.0% | |
| TTCTTGGAATGTTGAAGCAT+TGG | - | chr3_3:89463350-89463369 | None:intergenic | 35.0% | |
| TGAATTGAAGTCACTGTCTA+TGG | - | chr3_3:89463374-89463393 | None:intergenic | 35.0% | |
| ATAGACAGTGACTTCAATTC+AGG | + | chr3_3:89463373-89463392 | Msa0482520:CDS | 35.0% | |
| ! | GATTTTACCAAGCATTTCTG+AGG | - | chr3_3:89463494-89463513 | None:intergenic | 35.0% |
| ATGCTTGGTAAAATCAGTCA+TGG | + | chr3_3:89463499-89463518 | Msa0482520:CDS | 35.0% | |
| TCACTGATATGATGATTCCT+TGG | + | chr3_3:89463585-89463604 | Msa0482520:intron | 35.0% | |
| ! | AATTGGTTCAAAATAGGCTG+TGG | - | chr3_3:89463822-89463841 | None:intergenic | 35.0% |
| ! | TGAACCAATTTTTGAATCGG+AGG | + | chr3_3:89463832-89463851 | Msa0482520:intron | 35.0% |
| ! | CAAGGATGATGATGAAAGAA+AGG | + | chr3_3:89463966-89463985 | Msa0482520:intron | 35.0% |
| GAGCATGAAAAAGCTTAGTA+AGG | - | chr3_3:89464095-89464114 | None:intergenic | 35.0% | |
| AGCTTGTAGAAATTGCACAT+GGG | + | chr3_3:89464120-89464139 | Msa0482520:intron | 35.0% | |
| !! | ATCTGCAAGATTTTGAGGAA+AGG | + | chr3_3:89464167-89464186 | Msa0482520:intron | 35.0% |
| !! | TCTGCAAGATTTTGAGGAAA+GGG | + | chr3_3:89464168-89464187 | Msa0482520:intron | 35.0% |
| !! | ACACTTGAAAGCATTAGTGT+TGG | + | chr3_3:89464306-89464325 | Msa0482520:intron | 35.0% |
| ! | CCGAACAATTTTACAATGAG+AGG | + | chr3_3:89464358-89464377 | Msa0482520:intron | 35.0% |
| ! | TTGAAGAAATCCAAAGCACT+TGG | + | chr3_3:89464589-89464608 | Msa0482520:CDS | 35.0% |
| TTCTTGGAATGTTGAAGCAT+TGG | - | chr3_3:89463350-89463369 | None:intergenic | 35.0% | |
| TGAATTGAAGTCACTGTCTA+TGG | - | chr3_3:89463374-89463393 | None:intergenic | 35.0% | |
| ATAGACAGTGACTTCAATTC+AGG | + | chr3_3:89463373-89463392 | Msa0482520:CDS | 35.0% | |
| ! | GATTTTACCAAGCATTTCTG+AGG | - | chr3_3:89463494-89463513 | None:intergenic | 35.0% |
| ATGCTTGGTAAAATCAGTCA+TGG | + | chr3_3:89463499-89463518 | Msa0482520:CDS | 35.0% | |
| TCACTGATATGATGATTCCT+TGG | + | chr3_3:89463585-89463604 | Msa0482520:intron | 35.0% | |
| ! | AATTGGTTCAAAATAGGCTG+TGG | - | chr3_3:89463822-89463841 | None:intergenic | 35.0% |
| ! | TGAACCAATTTTTGAATCGG+AGG | + | chr3_3:89463832-89463851 | Msa0482520:intron | 35.0% |
| ! | CAAGGATGATGATGAAAGAA+AGG | + | chr3_3:89463966-89463985 | Msa0482520:intron | 35.0% |
| GAGCATGAAAAAGCTTAGTA+AGG | - | chr3_3:89464095-89464114 | None:intergenic | 35.0% | |
| AGCTTGTAGAAATTGCACAT+GGG | + | chr3_3:89464120-89464139 | Msa0482520:intron | 35.0% | |
| !! | ATCTGCAAGATTTTGAGGAA+AGG | + | chr3_3:89464167-89464186 | Msa0482520:intron | 35.0% |
| !! | TCTGCAAGATTTTGAGGAAA+GGG | + | chr3_3:89464168-89464187 | Msa0482520:intron | 35.0% |
| !! | ACACTTGAAAGCATTAGTGT+TGG | + | chr3_3:89464306-89464325 | Msa0482520:intron | 35.0% |
| ! | CCGAACAATTTTACAATGAG+AGG | + | chr3_3:89464358-89464377 | Msa0482520:intron | 35.0% |
| ! | TTGAAGAAATCCAAAGCACT+TGG | + | chr3_3:89464589-89464608 | Msa0482520:CDS | 35.0% |
| AGTCACTGTCTATGGATTCT+TGG | - | chr3_3:89463366-89463385 | None:intergenic | 40.0% | |
| GAAGACCAACTTGAGATGAA+GGG | - | chr3_3:89463429-89463448 | None:intergenic | 40.0% | |
| AATGCTCAGAGATCCTATTG+AGG | + | chr3_3:89463529-89463548 | Msa0482520:intron | 40.0% | |
| TATGATGATTCCTTGGACTG+TGG | + | chr3_3:89463592-89463611 | Msa0482520:intron | 40.0% | |
| CTGCAAAACTAAGCATTCCT+AGG | + | chr3_3:89463621-89463640 | Msa0482520:intron | 40.0% | |
| GAGCTGTATTAGTAAAGCCT+AGG | - | chr3_3:89463641-89463660 | None:intergenic | 40.0% | |
| TCAATGGTATGAGGCAAACA+AGG | - | chr3_3:89463752-89463771 | None:intergenic | 40.0% | |
| CTTGCCTCCGATTCAAAAAT+TGG | - | chr3_3:89463839-89463858 | None:intergenic | 40.0% | |
| CTACAATGGGGATTAAGTCT+TGG | + | chr3_3:89463914-89463933 | Msa0482520:intron | 40.0% | |
| TGTAGGACCAGTTTCAACTT+GGG | + | chr3_3:89463939-89463958 | Msa0482520:intron | 40.0% | |
| ! | TTGTTAGCCCAAGTTGAAAC+TGG | - | chr3_3:89463949-89463968 | None:intergenic | 40.0% |
| AGTTTCAACTTGGGCTAACA+AGG | + | chr3_3:89463948-89463967 | Msa0482520:intron | 40.0% | |
| GATGAAAGAAAGGCCAATAG+TGG | + | chr3_3:89463976-89463995 | Msa0482520:intron | 40.0% | |
| CAGCTTGTAGAAATTGCACA+TGG | + | chr3_3:89464119-89464138 | Msa0482520:intron | 40.0% | |
| AAGGGTGAAAGAAAGCAACA+AGG | + | chr3_3:89464186-89464205 | Msa0482520:intron | 40.0% | |
| AGGGTGAAAGAAAGCAACAA+GGG | + | chr3_3:89464187-89464206 | Msa0482520:intron | 40.0% | |
| TGATCCAATATGAGAAGCTG+CGG | - | chr3_3:89464239-89464258 | None:intergenic | 40.0% | |
| ATATTGGATCACCCTGTAAC+AGG | + | chr3_3:89464248-89464267 | Msa0482520:intron | 40.0% | |
| TCACAATTCCTCCTGTTACA+GGG | - | chr3_3:89464262-89464281 | None:intergenic | 40.0% | |
| !! | TTGGTTTGCCAATGATCACA+TGG | + | chr3_3:89464325-89464344 | Msa0482520:intron | 40.0% |
| AACATTGGCCATGTGATCAT+TGG | - | chr3_3:89464336-89464355 | None:intergenic | 40.0% | |
| !!! | GATGTTTTGAAGATAGGGGT+CGG | + | chr3_3:89464390-89464409 | Msa0482520:intron | 40.0% |
| TAGAAGGGAAGAGATTGCAA+AGG | + | chr3_3:89464420-89464439 | Msa0482520:intron | 40.0% | |
| TGGACACTCTTACAACAACT+TGG | + | chr3_3:89464540-89464559 | Msa0482520:CDS | 40.0% | |
| AGTCACTGTCTATGGATTCT+TGG | - | chr3_3:89463366-89463385 | None:intergenic | 40.0% | |
| GAAGACCAACTTGAGATGAA+GGG | - | chr3_3:89463429-89463448 | None:intergenic | 40.0% | |
| AATGCTCAGAGATCCTATTG+AGG | + | chr3_3:89463529-89463548 | Msa0482520:intron | 40.0% | |
| TATGATGATTCCTTGGACTG+TGG | + | chr3_3:89463592-89463611 | Msa0482520:intron | 40.0% | |
| CTGCAAAACTAAGCATTCCT+AGG | + | chr3_3:89463621-89463640 | Msa0482520:intron | 40.0% | |
| GAGCTGTATTAGTAAAGCCT+AGG | - | chr3_3:89463641-89463660 | None:intergenic | 40.0% | |
| TCAATGGTATGAGGCAAACA+AGG | - | chr3_3:89463752-89463771 | None:intergenic | 40.0% | |
| CTTGCCTCCGATTCAAAAAT+TGG | - | chr3_3:89463839-89463858 | None:intergenic | 40.0% | |
| CTACAATGGGGATTAAGTCT+TGG | + | chr3_3:89463914-89463933 | Msa0482520:intron | 40.0% | |
| TGTAGGACCAGTTTCAACTT+GGG | + | chr3_3:89463939-89463958 | Msa0482520:intron | 40.0% | |
| ! | TTGTTAGCCCAAGTTGAAAC+TGG | - | chr3_3:89463949-89463968 | None:intergenic | 40.0% |
| AGTTTCAACTTGGGCTAACA+AGG | + | chr3_3:89463948-89463967 | Msa0482520:intron | 40.0% | |
| GATGAAAGAAAGGCCAATAG+TGG | + | chr3_3:89463976-89463995 | Msa0482520:intron | 40.0% | |
| CAGCTTGTAGAAATTGCACA+TGG | + | chr3_3:89464119-89464138 | Msa0482520:intron | 40.0% | |
| AAGGGTGAAAGAAAGCAACA+AGG | + | chr3_3:89464186-89464205 | Msa0482520:intron | 40.0% | |
| AGGGTGAAAGAAAGCAACAA+GGG | + | chr3_3:89464187-89464206 | Msa0482520:intron | 40.0% | |
| TGATCCAATATGAGAAGCTG+CGG | - | chr3_3:89464239-89464258 | None:intergenic | 40.0% | |
| ATATTGGATCACCCTGTAAC+AGG | + | chr3_3:89464248-89464267 | Msa0482520:intron | 40.0% | |
| TCACAATTCCTCCTGTTACA+GGG | - | chr3_3:89464262-89464281 | None:intergenic | 40.0% | |
| !! | TTGGTTTGCCAATGATCACA+TGG | + | chr3_3:89464325-89464344 | Msa0482520:intron | 40.0% |
| AACATTGGCCATGTGATCAT+TGG | - | chr3_3:89464336-89464355 | None:intergenic | 40.0% | |
| !!! | GATGTTTTGAAGATAGGGGT+CGG | + | chr3_3:89464390-89464409 | Msa0482520:intron | 40.0% |
| TAGAAGGGAAGAGATTGCAA+AGG | + | chr3_3:89464420-89464439 | Msa0482520:intron | 40.0% | |
| TGGACACTCTTACAACAACT+TGG | + | chr3_3:89464540-89464559 | Msa0482520:CDS | 40.0% | |
| ! | GGCATGTGTAGTGATGATGA+TGG | - | chr3_3:89463329-89463348 | None:intergenic | 45.0% |
| CAGTTCCCTTCATCTCAAGT+TGG | + | chr3_3:89463421-89463440 | Msa0482520:CDS | 45.0% | |
| GGAAGACCAACTTGAGATGA+AGG | - | chr3_3:89463430-89463449 | None:intergenic | 45.0% | |
| !! | TCTCAAGTTGGTCTTCCTGA+TGG | + | chr3_3:89463433-89463452 | Msa0482520:CDS | 45.0% |
| GGAACATCCTCAGAAATGCT+TGG | + | chr3_3:89463484-89463503 | Msa0482520:CDS | 45.0% | |
| GGGATTAAGTCTTGGAGTGT+AGG | + | chr3_3:89463922-89463941 | Msa0482520:intron | 45.0% | |
| GTGTAGGACCAGTTTCAACT+TGG | + | chr3_3:89463938-89463957 | Msa0482520:intron | 45.0% | |
| GTCACAATTCCTCCTGTTAC+AGG | - | chr3_3:89464263-89464282 | None:intergenic | 45.0% | |
| GAATTGTGACTCACTGTGGT+TGG | + | chr3_3:89464273-89464292 | Msa0482520:intron | 45.0% | |
| ! | AAAGGCTGCGGAGATTTTGT+TGG | + | chr3_3:89464438-89464457 | Msa0482520:intron | 45.0% |
| ! | AAGGCTGCGGAGATTTTGTT+GGG | + | chr3_3:89464439-89464458 | Msa0482520:intron | 45.0% |
| ! | GCGGAGATTTTGTTGGGAAA+TGG | + | chr3_3:89464445-89464464 | Msa0482520:CDS | 45.0% |
| TGCTTCCAAGAGGACTATAG+AGG | + | chr3_3:89464513-89464532 | Msa0482520:CDS | 45.0% | |
| TCCAAGAGGACTATAGAGGA+AGG | + | chr3_3:89464517-89464536 | Msa0482520:CDS | 45.0% | |
| ACCTTCCTCTATAGTCCTCT+TGG | - | chr3_3:89464521-89464540 | None:intergenic | 45.0% | |
| AAGAGGACTATAGAGGAAGG+TGG | + | chr3_3:89464520-89464539 | Msa0482520:CDS | 45.0% | |
| TGCTTTCTCACCAAGTGCTT+TGG | - | chr3_3:89464602-89464621 | None:intergenic | 45.0% | |
| ! | GGCATGTGTAGTGATGATGA+TGG | - | chr3_3:89463329-89463348 | None:intergenic | 45.0% |
| CAGTTCCCTTCATCTCAAGT+TGG | + | chr3_3:89463421-89463440 | Msa0482520:CDS | 45.0% | |
| GGAAGACCAACTTGAGATGA+AGG | - | chr3_3:89463430-89463449 | None:intergenic | 45.0% | |
| !! | TCTCAAGTTGGTCTTCCTGA+TGG | + | chr3_3:89463433-89463452 | Msa0482520:CDS | 45.0% |
| GGAACATCCTCAGAAATGCT+TGG | + | chr3_3:89463484-89463503 | Msa0482520:CDS | 45.0% | |
| GGGATTAAGTCTTGGAGTGT+AGG | + | chr3_3:89463922-89463941 | Msa0482520:intron | 45.0% | |
| GTGTAGGACCAGTTTCAACT+TGG | + | chr3_3:89463938-89463957 | Msa0482520:intron | 45.0% | |
| GTCACAATTCCTCCTGTTAC+AGG | - | chr3_3:89464263-89464282 | None:intergenic | 45.0% | |
| GAATTGTGACTCACTGTGGT+TGG | + | chr3_3:89464273-89464292 | Msa0482520:intron | 45.0% | |
| ! | AAAGGCTGCGGAGATTTTGT+TGG | + | chr3_3:89464438-89464457 | Msa0482520:intron | 45.0% |
| ! | AAGGCTGCGGAGATTTTGTT+GGG | + | chr3_3:89464439-89464458 | Msa0482520:intron | 45.0% |
| ! | GCGGAGATTTTGTTGGGAAA+TGG | + | chr3_3:89464445-89464464 | Msa0482520:CDS | 45.0% |
| TGCTTCCAAGAGGACTATAG+AGG | + | chr3_3:89464513-89464532 | Msa0482520:CDS | 45.0% | |
| TCCAAGAGGACTATAGAGGA+AGG | + | chr3_3:89464517-89464536 | Msa0482520:CDS | 45.0% | |
| ACCTTCCTCTATAGTCCTCT+TGG | - | chr3_3:89464521-89464540 | None:intergenic | 45.0% | |
| AAGAGGACTATAGAGGAAGG+TGG | + | chr3_3:89464520-89464539 | Msa0482520:CDS | 45.0% | |
| TGCTTTCTCACCAAGTGCTT+TGG | - | chr3_3:89464602-89464621 | None:intergenic | 45.0% | |
| CGGCTCATCTCAATGGTATG+AGG | - | chr3_3:89463761-89463780 | None:intergenic | 50.0% | |
| !! | AAAGGCCAATAGTGGACACG+CGG | + | chr3_3:89463984-89464003 | Msa0482520:intron | 50.0% |
| GCACATGGGCTTGAAAAGTC+AGG | + | chr3_3:89464134-89464153 | Msa0482520:intron | 50.0% | |
| TTGGATCACCCTGTAACAGG+AGG | + | chr3_3:89464251-89464270 | Msa0482520:intron | 50.0% | |
| GGAGGAATTGTGACTCACTG+TGG | + | chr3_3:89464269-89464288 | Msa0482520:intron | 50.0% | |
| TGTGACTCACTGTGGTTGGA+AGG | + | chr3_3:89464277-89464296 | Msa0482520:intron | 50.0% | |
| TTGAAGATAGGGGTCGGCAA+TGG | + | chr3_3:89464396-89464415 | Msa0482520:intron | 50.0% | |
| GGAAGAGATTGCAAAGGCTG+CGG | + | chr3_3:89464426-89464445 | Msa0482520:intron | 50.0% | |
| AGTTTGGCGATGCTTCCAAG+AGG | + | chr3_3:89464503-89464522 | Msa0482520:CDS | 50.0% | |
| CGGCTCATCTCAATGGTATG+AGG | - | chr3_3:89463761-89463780 | None:intergenic | 50.0% | |
| !! | AAAGGCCAATAGTGGACACG+CGG | + | chr3_3:89463984-89464003 | Msa0482520:intron | 50.0% |
| GCACATGGGCTTGAAAAGTC+AGG | + | chr3_3:89464134-89464153 | Msa0482520:intron | 50.0% | |
| TTGGATCACCCTGTAACAGG+AGG | + | chr3_3:89464251-89464270 | Msa0482520:intron | 50.0% | |
| GGAGGAATTGTGACTCACTG+TGG | + | chr3_3:89464269-89464288 | Msa0482520:intron | 50.0% | |
| TGTGACTCACTGTGGTTGGA+AGG | + | chr3_3:89464277-89464296 | Msa0482520:intron | 50.0% | |
| TTGAAGATAGGGGTCGGCAA+TGG | + | chr3_3:89464396-89464415 | Msa0482520:intron | 50.0% | |
| GGAAGAGATTGCAAAGGCTG+CGG | + | chr3_3:89464426-89464445 | Msa0482520:intron | 50.0% | |
| AGTTTGGCGATGCTTCCAAG+AGG | + | chr3_3:89464503-89464522 | Msa0482520:CDS | 50.0% | |
| ! | GCAGCTGATTCCACAGTCCA+AGG | - | chr3_3:89463605-89463624 | None:intergenic | 55.0% |
| CTGCAGACGGCTCATCTCAA+TGG | - | chr3_3:89463768-89463787 | None:intergenic | 55.0% | |
| CCCAATCTCGAAGCTGCAGA+CGG | - | chr3_3:89463781-89463800 | None:intergenic | 55.0% | |
| CCGTCTGCAGCTTCGAGATT+GGG | + | chr3_3:89463778-89463797 | Msa0482520:CDS | 55.0% | |
| TGCAGCTTCGAGATTGGGTG+AGG | + | chr3_3:89463783-89463802 | Msa0482520:intron | 55.0% | |
| CTTCTCCGCGTGTCCACTAT+TGG | - | chr3_3:89463992-89464011 | None:intergenic | 55.0% | |
| GGCACCGCAGCTTCTCATAT+TGG | + | chr3_3:89464232-89464251 | Msa0482520:intron | 55.0% | |
| AGGGGTCGGCAATGGTTAGA+AGG | + | chr3_3:89464404-89464423 | Msa0482520:intron | 55.0% | |
| GGGGTCGGCAATGGTTAGAA+GGG | + | chr3_3:89464405-89464424 | Msa0482520:intron | 55.0% | |
| ! | GCAGCTGATTCCACAGTCCA+AGG | - | chr3_3:89463605-89463624 | None:intergenic | 55.0% |
| CTGCAGACGGCTCATCTCAA+TGG | - | chr3_3:89463768-89463787 | None:intergenic | 55.0% | |
| CCCAATCTCGAAGCTGCAGA+CGG | - | chr3_3:89463781-89463800 | None:intergenic | 55.0% | |
| CCGTCTGCAGCTTCGAGATT+GGG | + | chr3_3:89463778-89463797 | Msa0482520:CDS | 55.0% | |
| TGCAGCTTCGAGATTGGGTG+AGG | + | chr3_3:89463783-89463802 | Msa0482520:intron | 55.0% | |
| CTTCTCCGCGTGTCCACTAT+TGG | - | chr3_3:89463992-89464011 | None:intergenic | 55.0% | |
| GGCACCGCAGCTTCTCATAT+TGG | + | chr3_3:89464232-89464251 | Msa0482520:intron | 55.0% | |
| AGGGGTCGGCAATGGTTAGA+AGG | + | chr3_3:89464404-89464423 | Msa0482520:intron | 55.0% | |
| GGGGTCGGCAATGGTTAGAA+GGG | + | chr3_3:89464405-89464424 | Msa0482520:intron | 55.0% | |
| GCCGTCTGCAGCTTCGAGAT+TGG | + | chr3_3:89463777-89463796 | Msa0482520:CDS | 60.0% | |
| GGACACGCGGAGAAGAACGT+TGG | + | chr3_3:89463997-89464016 | Msa0482520:intron | 60.0% | |
| GCCGTCTGCAGCTTCGAGAT+TGG | + | chr3_3:89463777-89463796 | Msa0482520:CDS | 60.0% | |
| GGACACGCGGAGAAGAACGT+TGG | + | chr3_3:89463997-89464016 | Msa0482520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 89463295 | 89464630 | 89463295 | ID=Msa0482520;Name=Msa0482520 |
| chr3_3 | mRNA | 89463295 | 89464630 | 89463295 | ID=Msa0482520-mRNA-1;Parent=Msa0482520;Name=Msa0482520-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|0.5|0.66|3|0|173 |
| chr3_3 | exon | 89463295 | 89463524 | 89463295 | ID=Msa0482520-mRNA-1:exon:26195;Parent=Msa0482520-mRNA-1 |
| chr3_3 | exon | 89463697 | 89463799 | 89463697 | ID=Msa0482520-mRNA-1:exon:26196;Parent=Msa0482520-mRNA-1 |
| chr3_3 | exon | 89464442 | 89464630 | 89464442 | ID=Msa0482520-mRNA-1:exon:26197;Parent=Msa0482520-mRNA-1 |
| chr3_3 | CDS | 89463295 | 89463524 | 89463295 | ID=Msa0482520-mRNA-1:cds;Parent=Msa0482520-mRNA-1 |
| chr3_3 | CDS | 89463697 | 89463799 | 89463697 | ID=Msa0482520-mRNA-1:cds;Parent=Msa0482520-mRNA-1 |
| chr3_3 | CDS | 89464442 | 89464630 | 89464442 | ID=Msa0482520-mRNA-1:cds;Parent=Msa0482520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
