AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121490 MtrunA17_Chr7g0249551 87.324 71 9 0 89 159 28 98 5.25e-36 132
Msa1121490 MtrunA17_Chr4g0033731 70.886 79 23 0 83 161 21 99 9.12e-30 115
Msa1121490 MtrunA17_Chr1g0192661 58.571 70 29 0 90 159 28 97 1.46e-20 90.5
Msa1121490 MtrunA17_Chr7g0250141 40.517 116 60 2 150 265 214 320 8.33e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121490 AT1G08450.3 72.000 75 21 0 90 164 32 106 1.62e-29 115
Msa1121490 AT1G08450.2 72.000 75 21 0 90 164 32 106 1.79e-29 114
Msa1121490 AT1G08450.1 72.000 75 21 0 90 164 32 106 3.09e-29 115
Msa1121490 AT1G56340.2 61.972 71 27 0 89 159 25 95 6.11e-23 97.4
Msa1121490 AT1G56340.1 61.972 71 27 0 89 159 25 95 8.11e-23 97.1
Msa1121490 AT1G09210.1 60.563 71 28 0 89 159 25 95 2.33e-22 95.9

Find 86 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTTCATTTGATAGAATT+TGG 0.076247 7_3:-71539862 None:intergenic
ACACTTCATTGGATAGAATT+TGG 0.100816 7_3:-71539744 None:intergenic
GTCACTTTCATGATTCTTCT+TGG 0.178050 7_3:+71539529 Msa1121490:CDS
AGAAAGCTATGCTTATCTTT+TGG 0.226135 7_3:+71539572 Msa1121490:CDS
TCTTCTTTATTTAACCAAAA+TGG 0.236762 7_3:-71536567 None:intergenic
CACTTCATTGGATAGAATTT+GGG 0.258093 7_3:-71539743 None:intergenic
CACACGTTGTTTCTCATCTT+TGG 0.261898 7_3:+71539348 Msa1121490:CDS
CACTTCATTTGATAGAATTT+GGG 0.271604 7_3:-71539861 None:intergenic
AGGAAACTGAAACACCATTT+TGG 0.275537 7_3:+71536553 Msa1121490:CDS
TATCCAATACAACTATTAAA+TGG 0.282322 7_3:-71539990 None:intergenic
ATTGATCATTTCACTTCATT+TGG 0.284559 7_3:-71539699 None:intergenic
TTTCCATTTAATAGTTGTAT+TGG 0.315972 7_3:+71539987 Msa1121490:three_prime_UTR
TCAATGGGATGGTATGCTTT+TGG 0.323509 7_3:+71539664 Msa1121490:CDS
TGTGATGAACACAGAGTTAC+TGG 0.329072 7_3:-71535631 None:intergenic
GTCTCAACCATCGTCTTTCT+TGG 0.342208 7_3:+71539373 Msa1121490:CDS
GAGAAACAACGTGTGAATTC+TGG 0.349806 7_3:-71539340 None:intergenic
TGCAGAGATGGCAAAGTGTT+TGG 0.351900 7_3:-71539311 None:intergenic
CTTCAAGTGTGTGTTCCTCC+TGG 0.353640 7_3:+71535688 Msa1121490:CDS
TTGGTATTGTCTACAACATA+TGG 0.355189 7_3:+71539392 Msa1121490:CDS
TCCATATGGTCGTCCTTGCT+CGG 0.361970 7_3:+71539475 Msa1121490:CDS
CTACCCCACTGAAGAAGAAT+TGG 0.368065 7_3:+71535720 Msa1121490:CDS
ACTAATAACAAACACTTCAT+TGG 0.384305 7_3:-71539755 None:intergenic
GATCATTTCACTTCATTTGG+TGG 0.389143 7_3:-71539696 None:intergenic
ATTAGTCGGTGGACTTTCAA+TGG 0.393044 7_3:+71539648 Msa1121490:CDS
TCGTCCTTGCTCGGGTTGTT+TGG 0.409277 7_3:+71539484 Msa1121490:CDS
TTACAATTCATATCATCATA+TGG 0.409314 7_3:+71540050 Msa1121490:three_prime_UTR
ACGATCACCGCCTTTCCATA+TGG 0.427390 7_3:+71539461 Msa1121490:CDS
ATCATATGGATTGGTAACTT+TGG 0.430940 7_3:+71540064 Msa1121490:three_prime_UTR
GGTTTGTTCAAGCACACAGC+TGG 0.435407 7_3:+71538713 Msa1121490:CDS
CCATATGGTCGTCCTTGCTC+GGG 0.439867 7_3:+71539476 Msa1121490:CDS
TCAAGCACACAGCTGGGAAA+TGG 0.442286 7_3:+71538720 Msa1121490:CDS
AACAACCGTTTCGATCTTGA+TGG 0.443938 7_3:+71536528 Msa1121490:CDS
ACTGGAGATCCTGATGATAA+AGG 0.456495 7_3:+71538743 Msa1121490:CDS
CCCGAGCAAGGACGACCATA+TGG 0.460952 7_3:-71539476 None:intergenic
AGATGGATGGCGAAGTCGTT+GGG 0.466818 7_3:+71538655 Msa1121490:intron
TAGATGAAGAATATAAGAAT+GGG 0.468178 7_3:+71536463 Msa1121490:CDS
CAACAAGTACCTTTATCATC+AGG 0.471304 7_3:-71538752 None:intergenic
GGACATAGATAATTGATGAT+AGG 0.471608 7_3:-71539420 None:intergenic
CTTCTTCAGTGGGGTAGAAA+CGG 0.477521 7_3:-71535714 None:intergenic
CACAGAGTTACTGGTAGCTA+TGG 0.482912 7_3:-71535622 None:intergenic
TGATCAGCTGTGTGATGTGT+TGG 0.483773 7_3:+71539957 Msa1121490:three_prime_UTR
TTGTAATTTGCAGCTGTAAG+TGG 0.487569 7_3:+71539802 Msa1121490:three_prime_UTR
TTGTAATTTGCAGCTGTAAG+TGG 0.487569 7_3:+71539920 Msa1121490:three_prime_UTR
GAAGTGTTTGTTACATTAGT+CGG 0.497356 7_3:+71539634 Msa1121490:CDS
ACACAAAATTGCATATATAG+AGG 0.499589 7_3:-71540108 None:intergenic
GTAGATGAAGAATATAAGAA+TGG 0.500693 7_3:+71536462 Msa1121490:CDS
TTAACAAATTTCTGTTGGTG+TGG 0.503949 7_3:+71535590 Msa1121490:five_prime_UTR
TTCTGGTATCTTTGCAGAGA+TGG 0.507021 7_3:-71539323 None:intergenic
TTAGTCGGTGGACTTTCAAT+GGG 0.511483 7_3:+71539649 Msa1121490:CDS
TCAGATTAACAAATTTCTGT+TGG 0.515514 7_3:+71535585 Msa1121490:five_prime_UTR
ATTCATATCATCATATGGAT+TGG 0.521346 7_3:+71540055 Msa1121490:three_prime_UTR
TCGTGTTCTTTGTGCAGTGG+TGG 0.536041 7_3:-71539442 None:intergenic
ACAACCGTTTCGATCTTGAT+GGG 0.536427 7_3:+71536529 Msa1121490:CDS
CATACCAATTCTTCTTCAGT+GGG 0.538126 7_3:-71535724 None:intergenic
AGCTGTGTGCTTGAACAAAC+CGG 0.538636 7_3:-71538711 None:intergenic
GCGAAGTTAATAACTAAGCA+TGG 0.544944 7_3:-71540022 None:intergenic
ATAACTAAGCATGGAAACAT+TGG 0.545877 7_3:-71540013 None:intergenic
TAGCATCTTCAGATAGATCA+AGG 0.547254 7_3:-71539827 None:intergenic
ACATACCAATTCTTCTTCAG+TGG 0.550743 7_3:-71535725 None:intergenic
TCGGTGGACTTTCAATGGGA+TGG 0.557658 7_3:+71539653 Msa1121490:CDS
GTCGTTGGGTAAAATCAGAC+TGG 0.558783 7_3:+71538669 Msa1121490:CDS
CACACAGCTGGGAAATGGAC+TGG 0.561682 7_3:+71538725 Msa1121490:CDS
AAAACCAAACAACCCGAGCA+AGG 0.567741 7_3:-71539488 None:intergenic
AAGATGGATGGCGAAGTCGT+TGG 0.569423 7_3:+71538654 Msa1121490:intron
CGTGTTCTTTGTGCAGTGGT+GGG 0.569884 7_3:-71539441 None:intergenic
ACAGCTGATCAGATAGATCA+AGG 0.573270 7_3:-71539945 None:intergenic
CCGTTTCGATCTTGATGGGG+AGG 0.575181 7_3:+71536533 Msa1121490:CDS
CCTCCCCATCAAGATCGAAA+CGG 0.575429 7_3:-71536533 None:intergenic
AAAAGTAGCGAAGGAAAAGC+CGG 0.577015 7_3:+71538692 Msa1121490:CDS
TTTCATGATTCTTCTTGGTG+CGG 0.577556 7_3:+71539534 Msa1121490:CDS
GTTTGTTCAAGCACACAGCT+GGG 0.589722 7_3:+71538714 Msa1121490:CDS
ACTTCATTGGATAGAATTTG+GGG 0.590013 7_3:-71539742 None:intergenic
ACTTCATTTGATAGAATTTG+GGG 0.592202 7_3:-71539860 None:intergenic
GTGGGGTAGAAACGGAAACC+AGG 0.592793 7_3:-71535706 None:intergenic
TCTTCTCAAAATCTTCACGT+TGG 0.600907 7_3:-71536434 None:intergenic
TCAGACTGGAAAAGTAGCGA+AGG 0.615853 7_3:+71538683 Msa1121490:CDS
TGATCGTGTTCTTTGTGCAG+TGG 0.619907 7_3:-71539445 None:intergenic
GTGTTTGTTACATTAGTCGG+TGG 0.622983 7_3:+71539637 Msa1121490:CDS
AGATGAAGAATATAAGAATG+GGG 0.642579 7_3:+71536464 Msa1121490:CDS
GACAATACCAAGAAAGACGA+TGG 0.643742 7_3:-71539380 None:intergenic
GCAAGGACGACCATATGGAA+AGG 0.646878 7_3:-71539471 None:intergenic
CAACCGTTTCGATCTTGATG+GGG 0.647695 7_3:+71536530 Msa1121490:CDS
AAATTGCATATATAGAGGAG+CGG 0.679852 7_3:-71540103 None:intergenic
AGGACGACCATATGGAAAGG+CGG 0.700177 7_3:-71539468 None:intergenic
ATACCAATTCTTCTTCAGTG+GGG 0.740014 7_3:-71535723 None:intergenic
GGGTAGAAACGGAAACCAGG+AGG 0.746730 7_3:-71535703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATGAAAAATAAAAATTC+TGG + chr7_3:71537278-71537297 Msa1121490:intron 10.0%
!!! ATTTTTATTAGTATTTTTTC+CGG - chr7_3:71537593-71537612 None:intergenic 10.0%
!! ATTAAAAAAATTGAAAATTC+TGG - chr7_3:71537647-71537666 None:intergenic 10.0%
!! GAAAAATAATTGAAAAAATA+CGG - chr7_3:71537826-71537845 None:intergenic 10.0%
!! AAAAAAATATGAAAAAATTC+TGG - chr7_3:71537872-71537891 None:intergenic 10.0%
!! CTGAAAAATTAATAAAAAAT+TGG - chr7_3:71537986-71538005 None:intergenic 10.0%
!!! TATTACTTTAAGAATTTAAT+TGG + chr7_3:71538339-71538358 Msa1121490:intron 10.0%
!! TTAATTAAATGTTGAAAATA+AGG + chr7_3:71538514-71538533 Msa1121490:intron 10.0%
!! TGATATCTTATAAAAAAAGA+AGG - chr7_3:71536394-71536413 None:intergenic 15.0%
!!! TTGTTTGATTATTTTTTTCT+AGG + chr7_3:71536771-71536790 Msa1121490:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG - chr7_3:71538193-71538212 None:intergenic 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG - chr7_3:71538192-71538211 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG - chr7_3:71538191-71538210 None:intergenic 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG + chr7_3:71536847-71536866 Msa1121490:intron 15.0%
!!! AAAAAATTCTGAAAAAAATC+TGG + chr7_3:71537195-71537214 Msa1121490:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr7_3:71537468-71537487 Msa1121490:intron 15.0%
!!! AATACTAATGAAAATTTTTC+CGG - chr7_3:71537490-71537509 None:intergenic 15.0%
!!! ATTTTTGTGTATTTATAAAC+CGG - chr7_3:71537568-71537587 None:intergenic 15.0%
!!! TTTTTATTAGTATTTTTTCC+GGG - chr7_3:71537592-71537611 None:intergenic 15.0%
!! TTAAAAATTTCGAAAATATC+TGG - chr7_3:71537696-71537715 None:intergenic 15.0%
!! AAAAAAATTGAAAACAATTC+TGG - chr7_3:71537923-71537942 None:intergenic 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG - chr7_3:71536847-71536866 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG + chr7_3:71538191-71538210 Msa1121490:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG + chr7_3:71538192-71538211 Msa1121490:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG + chr7_3:71538193-71538212 Msa1121490:intron 15.0%
!!! TCTTGTAATTTTATTGTAAA+AGG + chr7_3:71539152-71539171 Msa1121490:intron 15.0%
!!! CTTGTAATTTTATTGTAAAA+GGG + chr7_3:71539153-71539172 Msa1121490:intron 15.0%
!!! TGAAAATACTTTTCATGTTT+TGG + chr7_3:71535770-71535789 Msa1121490:intron 20.0%
!! TTTATCATTCCATTAATTGA+TGG + chr7_3:71535901-71535920 Msa1121490:intron 20.0%
!! AGTTATACCTATATTATTGA+TGG - chr7_3:71536108-71536127 None:intergenic 20.0%
!! TAGATGAAGAATATAAGAAT+GGG + chr7_3:71536463-71536482 Msa1121490:CDS 20.0%
!!! TCTTCTTTATTTAACCAAAA+TGG - chr7_3:71536570-71536589 None:intergenic 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG - chr7_3:71538194-71538213 None:intergenic 20.0%
!! AATAAAAAAAATTACACACG+TGG - chr7_3:71536945-71536964 None:intergenic 20.0%
!!! TTTTCATTAGTATTTTTTCC+AGG + chr7_3:71537469-71537488 Msa1121490:intron 20.0%
!!! AATTTTCATTATGTGTATTC+CGG + chr7_3:71537520-71537539 Msa1121490:intron 20.0%
!!! ACACATAATTTTTTGTAAAC+CGG - chr7_3:71537542-71537561 None:intergenic 20.0%
!! ACAAAAAATTATGTGTATTC+CGG + chr7_3:71537546-71537565 Msa1121490:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG + chr7_3:71537571-71537590 Msa1121490:intron 20.0%
!!! ATTGAAAATTCTGGAAAATA+CGG - chr7_3:71537638-71537657 None:intergenic 20.0%
!! ATATCTGGAAAATTTGAAAA+CGG - chr7_3:71537681-71537700 None:intergenic 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG + chr7_3:71538194-71538213 Msa1121490:intron 20.0%
!! AATAGCAATTTAAACATATG+CGG - chr7_3:71538291-71538310 None:intergenic 20.0%
!! GTTGATTATGATTATAAGAA+TGG + chr7_3:71538466-71538485 Msa1121490:intron 20.0%
!!! TTGATTTAGTATTCTTTTAC+TGG + chr7_3:71538772-71538791 Msa1121490:intron 20.0%
!!! AAATGGATTATTATAAGTTG+TGG + chr7_3:71538851-71538870 Msa1121490:intron 20.0%
!!! AATGGATTATTATAAGTTGT+GGG + chr7_3:71538852-71538871 Msa1121490:intron 20.0%
!! AAAAAAAATGCATTCACTTA+AGG - chr7_3:71538954-71538973 None:intergenic 20.0%
!! TTTCCATTTAATAGTTGTAT+TGG + chr7_3:71539987-71540006 Msa1121490:three_prime_UTR 20.0%
!! TATCCAATACAACTATTAAA+TGG - chr7_3:71539993-71540012 None:intergenic 20.0%
!! TTACAATTCATATCATCATA+TGG + chr7_3:71540050-71540069 Msa1121490:three_prime_UTR 20.0%
! TCAGATTAACAAATTTCTGT+TGG + chr7_3:71535585-71535604 Msa1121490:five_prime_UTR 25.0%
! ATCAAACAATCTAAACATGT+AGG + chr7_3:71535949-71535968 Msa1121490:intron 25.0%
! AAGAAGACCATCAATAATAT+AGG + chr7_3:71536098-71536117 Msa1121490:intron 25.0%
! GTAGATGAAGAATATAAGAA+TGG + chr7_3:71536462-71536481 Msa1121490:CDS 25.0%
! AGATGAAGAATATAAGAATG+GGG + chr7_3:71536464-71536483 Msa1121490:CDS 25.0%
! AGCGAAAAGTTAGTTAAATT+TGG + chr7_3:71536695-71536714 Msa1121490:intron 25.0%
! TACACATAATGAAAATTTCC+TGG - chr7_3:71537517-71537536 None:intergenic 25.0%
! AAAATTTGAAAACGGAATTC+TGG - chr7_3:71537673-71537692 None:intergenic 25.0%
!!! TTCACTTTTGTTTGCAATTT+TGG - chr7_3:71538160-71538179 None:intergenic 25.0%
!! AAAAGCACATTGAAGTTAAA+TGG - chr7_3:71538814-71538833 None:intergenic 25.0%
! GCTACAAACGAAATATAAAA+TGG + chr7_3:71538834-71538853 Msa1121490:intron 25.0%
! AAGAAATATGCATTCACTTA+AGG - chr7_3:71538984-71539003 None:intergenic 25.0%
! CATTCAACTTTGTATGTTAA+AGG - chr7_3:71539009-71539028 None:intergenic 25.0%
! TTAACATACAAAGTTGAATG+AGG + chr7_3:71539009-71539028 Msa1121490:intron 25.0%
! TAACATACAAAGTTGAATGA+GGG + chr7_3:71539010-71539029 Msa1121490:intron 25.0%
! CGTGCAAAAAATATATATGA+AGG + chr7_3:71539125-71539144 Msa1121490:intron 25.0%
!! GTAATTTTATTGTAAAAGGG+AGG + chr7_3:71539156-71539175 Msa1121490:intron 25.0%
! TAAATGCAAAATACAGTGAA+AGG + chr7_3:71539188-71539207 Msa1121490:intron 25.0%
! AAATGCAAAATACAGTGAAA+GGG + chr7_3:71539189-71539208 Msa1121490:intron 25.0%
!!! TTTTTGTGTGAATTTGTTGT+AGG + chr7_3:71539268-71539287 Msa1121490:intron 25.0%
! ATTGATCATTTCACTTCATT+TGG - chr7_3:71539702-71539721 None:intergenic 25.0%
! ACTAATAACAAACACTTCAT+TGG - chr7_3:71539758-71539777 None:intergenic 25.0%
! ACTTCATTTGATAGAATTTG+GGG - chr7_3:71539863-71539882 None:intergenic 25.0%
! CACTTCATTTGATAGAATTT+GGG - chr7_3:71539864-71539883 None:intergenic 25.0%
! ACACTTCATTTGATAGAATT+TGG - chr7_3:71539865-71539884 None:intergenic 25.0%
! ATTCATATCATCATATGGAT+TGG + chr7_3:71540055-71540074 Msa1121490:three_prime_UTR 25.0%
! ACACAAAATTGCATATATAG+AGG - chr7_3:71540111-71540130 None:intergenic 25.0%
TTAACAAATTTCTGTTGGTG+TGG + chr7_3:71535590-71535609 Msa1121490:five_prime_UTR 30.0%
!! ACTTTTCATGTTTTGGACTT+TGG + chr7_3:71535777-71535796 Msa1121490:intron 30.0%
! TGTGTTATGCTGTTTAGTTT+AGG + chr7_3:71535839-71535858 Msa1121490:intron 30.0%
! GTGTTATGCTGTTTAGTTTA+GGG + chr7_3:71535840-71535859 Msa1121490:intron 30.0%
TGGAATGATAAATCTCATCT+CGG - chr7_3:71535893-71535912 None:intergenic 30.0%
AACAATCTAAACATGTAGGT+TGG + chr7_3:71535953-71535972 Msa1121490:intron 30.0%
TATAACTGATGAACTAAGTG+AGG + chr7_3:71536121-71536140 Msa1121490:intron 30.0%
! ACTTAGCAGTTAGTTTAGTT+AGG - chr7_3:71536147-71536166 None:intergenic 30.0%
!! TGAAGATTTTGAGAAGAATG+AGG + chr7_3:71536440-71536459 Msa1121490:CDS 30.0%
! TTCGCTTATCTTTTAACAGT+TGG - chr7_3:71536681-71536700 None:intergenic 30.0%
! TCTAGGCTTAATTACACTTT+TGG + chr7_3:71536788-71536807 Msa1121490:intron 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG + chr7_3:71536879-71536898 Msa1121490:intron 30.0%
TTAGTATATATGTCGAGCTT+AGG + chr7_3:71537415-71537434 Msa1121490:intron 30.0%
TGCAAACAAAAGTGAACTTA+AGG + chr7_3:71538164-71538183 Msa1121490:intron 30.0%
GCAAACAAAAGTGAACTTAA+GGG + chr7_3:71538165-71538184 Msa1121490:intron 30.0%
CAAACAAAAGTGAACTTAAG+GGG + chr7_3:71538166-71538185 Msa1121490:intron 30.0%
CTTACATGCTAGTAGAAAAA+AGG - chr7_3:71538268-71538287 None:intergenic 30.0%
ACATTCAATTACATCACACT+AGG - chr7_3:71538409-71538428 None:intergenic 30.0%
! TGCTATGGTTTTTAATGTGT+TGG + chr7_3:71538623-71538642 Msa1121490:intron 30.0%
!! TGTGTTGGATTTTGAAAAGA+TGG + chr7_3:71538638-71538657 Msa1121490:intron 30.0%
!! TTGGATTTTGAAAAGATGGA+TGG + chr7_3:71538642-71538661 Msa1121490:intron 30.0%
TGATTTATCAGCTACAATTG+AGG - chr7_3:71538885-71538904 None:intergenic 30.0%
CAATTGTAGCTGATAAATCA+AGG + chr7_3:71538885-71538904 Msa1121490:intron 30.0%
!!! TCACTTAAGGTTTTAGATTG+TGG - chr7_3:71538941-71538960 None:intergenic 30.0%
TATCTGAATCATTAGCTCAA+GGG - chr7_3:71539061-71539080 None:intergenic 30.0%
! TGTTACGTGTGACAATATTT+TGG + chr7_3:71539088-71539107 Msa1121490:intron 30.0%
TTGGTATTGTCTACAACATA+TGG + chr7_3:71539392-71539411 Msa1121490:CDS 30.0%
! GGACATAGATAATTGATGAT+AGG - chr7_3:71539423-71539442 None:intergenic 30.0%
! AGAAAGCTATGCTTATCTTT+TGG + chr7_3:71539572-71539591 Msa1121490:CDS 30.0%
! GAAAGCTATGCTTATCTTTT+GGG + chr7_3:71539573-71539592 Msa1121490:CDS 30.0%
! GAAGTGTTTGTTACATTAGT+CGG + chr7_3:71539634-71539653 Msa1121490:CDS 30.0%
ACTTCATTGGATAGAATTTG+GGG - chr7_3:71539745-71539764 None:intergenic 30.0%
CACTTCATTGGATAGAATTT+GGG - chr7_3:71539746-71539765 None:intergenic 30.0%
ACACTTCATTGGATAGAATT+TGG - chr7_3:71539747-71539766 None:intergenic 30.0%
ATAACTAAGCATGGAAACAT+TGG - chr7_3:71540016-71540035 None:intergenic 30.0%
!! ATCATATGGATTGGTAACTT+TGG + chr7_3:71540064-71540083 Msa1121490:three_prime_UTR 30.0%
AAATTGCATATATAGAGGAG+CGG - chr7_3:71540106-71540125 None:intergenic 30.0%
! CAATTTCATCTTTTACGCTC+AGG + chr7_3:71535659-71535678 Msa1121490:five_prime_UTR 35.0%
ATACCAATTCTTCTTCAGTG+GGG - chr7_3:71535726-71535745 None:intergenic 35.0%
CATACCAATTCTTCTTCAGT+GGG - chr7_3:71535727-71535746 None:intergenic 35.0%
ACATACCAATTCTTCTTCAG+TGG - chr7_3:71535728-71535747 None:intergenic 35.0%
AAATAGAAGAAGAGCAGGAT+AGG - chr7_3:71535820-71535839 None:intergenic 35.0%
AACACAAATAGAAGAAGAGC+AGG - chr7_3:71535825-71535844 None:intergenic 35.0%
AGCATAGCACCATCAATTAA+TGG - chr7_3:71535913-71535932 None:intergenic 35.0%
GTTGGTTAATTAGCGTAATC+TGG + chr7_3:71535971-71535990 Msa1121490:intron 35.0%
CGTGCATCTTAGATTGTAAA+TGG - chr7_3:71536001-71536020 None:intergenic 35.0%
CGATTAATATCAGCAAAGCT+AGG - chr7_3:71536211-71536230 None:intergenic 35.0%
TCTTCTCAAAATCTTCACGT+TGG - chr7_3:71536437-71536456 None:intergenic 35.0%
! AGGAAACTGAAACACCATTT+TGG + chr7_3:71536553-71536572 Msa1121490:CDS 35.0%
! TCGCAACTTTTGGATACTTA+GGG - chr7_3:71538223-71538242 None:intergenic 35.0%
! ATCGCAACTTTTGGATACTT+AGG - chr7_3:71538222-71538241 None:intergenic 35.0%
CAACCAAAAGTGAACTTAAG+GGG - chr7_3:71536873-71536892 None:intergenic 35.0%
GCAACCAAAAGTGAACTTAA+GGG - chr7_3:71536874-71536893 None:intergenic 35.0%
TGCAACCAAAAGTGAACTTA+AGG - chr7_3:71536875-71536894 None:intergenic 35.0%
! ATCGCAACTTTTGGATACTT+AGG + chr7_3:71538222-71538241 Msa1121490:intron 35.0%
! TCGCAACTTTTGGATACTTA+GGG + chr7_3:71538223-71538242 Msa1121490:intron 35.0%
TTCTCATCGATCATATGCTA+TGG + chr7_3:71538608-71538627 Msa1121490:intron 35.0%
CAACAAGTACCTTTATCATC+AGG - chr7_3:71538755-71538774 None:intergenic 35.0%
GCACATTGAAGTTAAATGGA+TGG - chr7_3:71538810-71538829 None:intergenic 35.0%
CTATCTGAATCATTAGCTCA+AGG - chr7_3:71539062-71539081 None:intergenic 35.0%
GAGTACAAAATGGTAGTAAC+AGG + chr7_3:71539213-71539232 Msa1121490:intron 35.0%
AAATGGTAGTAACAGGAACT+CGG + chr7_3:71539220-71539239 Msa1121490:intron 35.0%
! GTCACTTTCATGATTCTTCT+TGG + chr7_3:71539529-71539548 Msa1121490:CDS 35.0%
TTTCATGATTCTTCTTGGTG+CGG + chr7_3:71539534-71539553 Msa1121490:CDS 35.0%
GATCATTTCACTTCATTTGG+TGG - chr7_3:71539699-71539718 None:intergenic 35.0%
! TTGTAATTTGCAGCTGTAAG+TGG + chr7_3:71539802-71539821 Msa1121490:three_prime_UTR 35.0%
TAGCATCTTCAGATAGATCA+AGG - chr7_3:71539830-71539849 None:intergenic 35.0%
! TTGTAATTTGCAGCTGTAAG+TGG + chr7_3:71539802-71539821 Msa1121490:three_prime_UTR 35.0%
GCGAAGTTAATAACTAAGCA+TGG - chr7_3:71540025-71540044 None:intergenic 35.0%
TGTGATGAACACAGAGTTAC+TGG - chr7_3:71535634-71535653 None:intergenic 40.0%
! TTCATCTTTTACGCTCAGGA+TGG + chr7_3:71535663-71535682 Msa1121490:exon 40.0%
AACAACCGTTTCGATCTTGA+TGG + chr7_3:71536528-71536547 Msa1121490:CDS 40.0%
ACAACCGTTTCGATCTTGAT+GGG + chr7_3:71536529-71536548 Msa1121490:CDS 40.0%
!!! ATCTTCGAAGAGCGTTTTGA+AGG + chr7_3:71536612-71536631 Msa1121490:CDS 40.0%
! GCAACTTTTGGATACTTAGG+GGG - chr7_3:71538225-71538244 None:intergenic 40.0%
! CGCAACTTTTGGATACTTAG+GGG - chr7_3:71538224-71538243 None:intergenic 40.0%
GTATCCAAAAGTTGCGATTC+AGG + chr7_3:71536819-71536838 Msa1121490:intron 40.0%
GTCTTGACTGGGTCAAAATT+GGG - chr7_3:71536913-71536932 None:intergenic 40.0%
TGTCTTGACTGGGTCAAAAT+TGG - chr7_3:71536914-71536933 None:intergenic 40.0%
GTATCCAAAAGTTGCGATTC+AGG - chr7_3:71536819-71536838 None:intergenic 40.0%
! CGCAACTTTTGGATACTTAG+GGG + chr7_3:71538224-71538243 Msa1121490:intron 40.0%
! GCAACTTTTGGATACTTAGG+GGG + chr7_3:71538225-71538244 Msa1121490:intron 40.0%
! CAACTTTTGGATACTTAGGG+GGG + chr7_3:71538226-71538245 Msa1121490:intron 40.0%
TCACACTAGGTAGATATACG+TGG - chr7_3:71538396-71538415 None:intergenic 40.0%
AAAAGTAGCGAAGGAAAAGC+CGG + chr7_3:71538692-71538711 Msa1121490:CDS 40.0%
ACTGGAGATCCTGATGATAA+AGG + chr7_3:71538743-71538762 Msa1121490:CDS 40.0%
ATCAGCTACAATTGAGGTTG+CGG - chr7_3:71538879-71538898 None:intergenic 40.0%
!!! TTTTAGAATCTCCACAAGCG+CGG + chr7_3:71538909-71538928 Msa1121490:intron 40.0%
! GTGAAAGGGAGAGTACAAAA+TGG + chr7_3:71539203-71539222 Msa1121490:intron 40.0%
TTCTGGTATCTTTGCAGAGA+TGG - chr7_3:71539326-71539345 None:intergenic 40.0%
GAGAAACAACGTGTGAATTC+TGG - chr7_3:71539343-71539362 None:intergenic 40.0%
!! CACACGTTGTTTCTCATCTT+TGG + chr7_3:71539348-71539367 Msa1121490:CDS 40.0%
GACAATACCAAGAAAGACGA+TGG - chr7_3:71539383-71539402 None:intergenic 40.0%
! GTGTTTGTTACATTAGTCGG+TGG + chr7_3:71539637-71539656 Msa1121490:CDS 40.0%
! ATTAGTCGGTGGACTTTCAA+TGG + chr7_3:71539648-71539667 Msa1121490:CDS 40.0%
! TTAGTCGGTGGACTTTCAAT+GGG + chr7_3:71539649-71539668 Msa1121490:CDS 40.0%
! TCAATGGGATGGTATGCTTT+TGG + chr7_3:71539664-71539683 Msa1121490:CDS 40.0%
ACAGCTGATCAGATAGATCA+AGG - chr7_3:71539948-71539967 None:intergenic 40.0%
CACAGAGTTACTGGTAGCTA+TGG - chr7_3:71535625-71535644 None:intergenic 45.0%
CTTCTTCAGTGGGGTAGAAA+CGG - chr7_3:71535717-71535736 None:intergenic 45.0%
CTACCCCACTGAAGAAGAAT+TGG + chr7_3:71535720-71535739 Msa1121490:CDS 45.0%
CATGCTCTCTAATGAAGTCG+CGG + chr7_3:71536238-71536257 Msa1121490:intron 45.0%
GCGGTCAGTGTCTATATGTT+TGG + chr7_3:71536257-71536276 Msa1121490:intron 45.0%
AACAGTCACATGAGCGACAA+GGG - chr7_3:71536285-71536304 None:intergenic 45.0%
AAACAGTCACATGAGCGACA+AGG - chr7_3:71536286-71536305 None:intergenic 45.0%
AAAGAGCAAGAAGACGAGGT+AGG - chr7_3:71536361-71536380 None:intergenic 45.0%
CAACCGTTTCGATCTTGATG+GGG + chr7_3:71536530-71536549 Msa1121490:CDS 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG + chr7_3:71536867-71536886 Msa1121490:intron 45.0%
ACTGGGTCAAAATTGGGCTA+GGG - chr7_3:71536907-71536926 None:intergenic 45.0%
!! AGCGTTGACTCGGTCAAAAT+TGG + chr7_3:71538125-71538144 Msa1121490:intron 45.0%
!! GCGTTGACTCGGTCAAAATT+GGG + chr7_3:71538126-71538145 Msa1121490:intron 45.0%
ACTCGGTCAAAATTGGGCTA+GGG + chr7_3:71538132-71538151 Msa1121490:intron 45.0%
GTCGTTGGGTAAAATCAGAC+TGG + chr7_3:71538669-71538688 Msa1121490:CDS 45.0%
TCAGACTGGAAAAGTAGCGA+AGG + chr7_3:71538683-71538702 Msa1121490:CDS 45.0%
AGCTGTGTGCTTGAACAAAC+CGG - chr7_3:71538714-71538733 None:intergenic 45.0%
GTTTGTTCAAGCACACAGCT+GGG + chr7_3:71538714-71538733 Msa1121490:CDS 45.0%
! TGCAGAGATGGCAAAGTGTT+TGG - chr7_3:71539314-71539333 None:intergenic 45.0%
GTCTCAACCATCGTCTTTCT+TGG + chr7_3:71539373-71539392 Msa1121490:CDS 45.0%
TGATCGTGTTCTTTGTGCAG+TGG - chr7_3:71539448-71539467 None:intergenic 45.0%
AAAACCAAACAACCCGAGCA+AGG - chr7_3:71539491-71539510 None:intergenic 45.0%
!!! GCTCGGGTTGTTTGGTTTTA+TGG + chr7_3:71539492-71539511 Msa1121490:CDS 45.0%
TGATCAGCTGTGTGATGTGT+TGG + chr7_3:71539957-71539976 Msa1121490:three_prime_UTR 45.0%
!! AAAAAAATATTATAAAATTC+TGG + chr7_3:71537077-71537096 Msa1121490:intron 5.0%
!! TAAAAAAAATAAAAAAATTC+TGG + chr7_3:71537126-71537145 Msa1121490:intron 5.0%
!! TAAAAAATAAATAAAAATTC+TGG - chr7_3:71538055-71538074 None:intergenic 5.0%
CTTCAAGTGTGTGTTCCTCC+TGG + chr7_3:71535688-71535707 Msa1121490:CDS 50.0%
CGTCAAAGAGCAAGAAGACG+AGG - chr7_3:71536365-71536384 None:intergenic 50.0%
CCTCCCCATCAAGATCGAAA+CGG - chr7_3:71536536-71536555 None:intergenic 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG - chr7_3:71536905-71536924 None:intergenic 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG - chr7_3:71536906-71536925 None:intergenic 50.0%
GACTGGGTCAAAATTGGGCT+AGG - chr7_3:71536908-71536927 None:intergenic 50.0%
! GACTCGGTCAAAATTGGGCT+AGG + chr7_3:71538131-71538150 Msa1121490:intron 50.0%
! CTCGGTCAAAATTGGGCTAG+GGG + chr7_3:71538133-71538152 Msa1121490:intron 50.0%
! TCGGTCAAAATTGGGCTAGG+GGG + chr7_3:71538134-71538153 Msa1121490:intron 50.0%
AAGATGGATGGCGAAGTCGT+TGG + chr7_3:71538654-71538673 Msa1121490:intron 50.0%
AGATGGATGGCGAAGTCGTT+GGG + chr7_3:71538655-71538674 Msa1121490:intron 50.0%
! GGTTTGTTCAAGCACACAGC+TGG + chr7_3:71538713-71538732 Msa1121490:CDS 50.0%
TCAAGCACACAGCTGGGAAA+TGG + chr7_3:71538720-71538739 Msa1121490:CDS 50.0%
CGTGTTCTTTGTGCAGTGGT+GGG - chr7_3:71539444-71539463 None:intergenic 50.0%
TCGTGTTCTTTGTGCAGTGG+TGG - chr7_3:71539445-71539464 None:intergenic 50.0%
ACGATCACCGCCTTTCCATA+TGG + chr7_3:71539461-71539480 Msa1121490:CDS 50.0%
AGGACGACCATATGGAAAGG+CGG - chr7_3:71539471-71539490 None:intergenic 50.0%
GCAAGGACGACCATATGGAA+AGG - chr7_3:71539474-71539493 None:intergenic 50.0%
TCCATATGGTCGTCCTTGCT+CGG + chr7_3:71539475-71539494 Msa1121490:CDS 50.0%
! TCGGTGGACTTTCAATGGGA+TGG + chr7_3:71539653-71539672 Msa1121490:CDS 50.0%
GGGTAGAAACGGAAACCAGG+AGG - chr7_3:71535706-71535725 None:intergenic 55.0%
GTGGGGTAGAAACGGAAACC+AGG - chr7_3:71535709-71535728 None:intergenic 55.0%
CCGTTTCGATCTTGATGGGG+AGG + chr7_3:71536533-71536552 Msa1121490:CDS 55.0%
! GGGGCCTGAATCGCAACTTT+TGG - chr7_3:71538213-71538232 None:intergenic 55.0%
! GGGGCCTGAATCGCAACTTT+TGG + chr7_3:71538213-71538232 Msa1121490:intron 55.0%
CACACAGCTGGGAAATGGAC+TGG + chr7_3:71538725-71538744 Msa1121490:CDS 55.0%
CCATATGGTCGTCCTTGCTC+GGG + chr7_3:71539476-71539495 Msa1121490:CDS 55.0%
! TCGTCCTTGCTCGGGTTGTT+TGG + chr7_3:71539484-71539503 Msa1121490:CDS 55.0%
!! GGCGCTGACGTGTCTTGACT+GGG - chr7_3:71536924-71536943 None:intergenic 60.0%
!! TGGCGCTGACGTGTCTTGAC+TGG - chr7_3:71536925-71536944 None:intergenic 60.0%
!! CGTCCACGTCAGCGTTGACT+CGG + chr7_3:71538115-71538134 Msa1121490:intron 60.0%
TGACCGAGTCAACGCTGACG+TGG - chr7_3:71538121-71538140 None:intergenic 60.0%
TGTGGTCATGACCGCGCTTG+TGG - chr7_3:71538923-71538942 None:intergenic 60.0%
CCCGAGCAAGGACGACCATA+TGG - chr7_3:71539479-71539498 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71535576 71540145 71535576 ID=Msa1121490;Name=Msa1121490
chr7_3 mRNA 71535576 71540145 71535576 ID=Msa1121490-mRNA-1;Parent=Msa1121490;Name=Msa1121490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106|1|1|1|1|1|4|434|271
chr7_3 exon 71535576 71535741 71535576 ID=Msa1121490-mRNA-1:exon:18283;Parent=Msa1121490-mRNA-1
chr7_3 exon 71536408 71536633 71536408 ID=Msa1121490-mRNA-1:exon:18284;Parent=Msa1121490-mRNA-1
chr7_3 exon 71538657 71538764 71538657 ID=Msa1121490-mRNA-1:exon:18285;Parent=Msa1121490-mRNA-1
chr7_3 exon 71539290 71540145 71539290 ID=Msa1121490-mRNA-1:exon:18286;Parent=Msa1121490-mRNA-1
chr7_3 five_prime_UTR 71535576 71535681 71535576 ID=Msa1121490-mRNA-1:five_prime_utr;Parent=Msa1121490-mRNA-1
chr7_3 CDS 71535682 71535741 71535682 ID=Msa1121490-mRNA-1:cds;Parent=Msa1121490-mRNA-1
chr7_3 CDS 71536408 71536633 71536408 ID=Msa1121490-mRNA-1:cds;Parent=Msa1121490-mRNA-1
chr7_3 CDS 71538657 71538764 71538657 ID=Msa1121490-mRNA-1:cds;Parent=Msa1121490-mRNA-1
chr7_3 CDS 71539290 71539711 71539290 ID=Msa1121490-mRNA-1:cds;Parent=Msa1121490-mRNA-1
chr7_3 three_prime_UTR 71539712 71540145 71539712 ID=Msa1121490-mRNA-1:three_prime_utr;Parent=Msa1121490-mRNA-1
Gene Sequence

>Msa1121490

ATGGATCTTCAAGTGTGTGTTCCTCCTGGTTTCCGTTTCTACCCCACTGAAGAAGAATTGATATCATATTATCTTTGCAAACGAAGCCAACGTGAAGATTTTGAGAAGAATGAGGTAGATGAAGAATATAAGAATGGGGTTGATGAAGAAGTACATAGAAGATTATCTAAAAATATAAAGAACAACCGTTTCGATCTTGATGGGGAGGAAACTGAAACACCATTTTGGTTAAATAAAGAAGAAATATCATCATGCTACAGAAATATCTTCGAAGAGCGTTTTGAAGATGGATGGCGAAGTCGTTGGGTAAAATCAGACTGGAAAAGTAGCGAAGGAAAAGCCGGTTTGTTCAAGCACACAGCTGGGAAATGGACTGGAGATCCTGATGATAAAGGTATTCAAACATCTAATGATGCCAAACACTTTGCCATCTCTGCAAAGATACCAGAATTCACACGTTGTTTCTCATCTTTGGTAGTCTCAACCATCGTCTTTCTTGGTATTGTCTACAACATATGGAACAGCCTATCATCAATTATCTATGTCCCACCACTGCACAAAGAACACGATCACCGCCTTTCCATATGGTCGTCCTTGCTCGGGTTGTTTGGTTTTATGGTGTTTGTTTGTGCTGTCACTTTCATGATTCTTCTTGGTGCGGCATTCACTAGTATTCAGAAAGCTATGCTTATCTTTTGGGTCATTTTGATGCATCTTCAATCAGCTAACTCAATCATCGAAGTGTTTGTTACATTAGTCGGTGGACTTTCAATGGGATGGTATGCTTTTGGAAAAAGCAACCACCAAATGAAGTGA

Protein sequence

>Msa1121490

MDLQVCVPPGFRFYPTEEELISYYLCKRSQREDFEKNEVDEEYKNGVDEEVHRRLSKNIKNNRFDLDGEETETPFWLNKEEISSCYRNIFEERFEDGWRSRWVKSDWKSSEGKAGLFKHTAGKWTGDPDDKGIQTSNDAKHFAISAKIPEFTRCFSSLVVSTIVFLGIVYNIWNSLSSIIYVPPLHKEHDHRLSIWSSLLGLFGFMVFVCAVTFMILLGAAFTSIQKAMLIFWVILMHLQSANSIIEVFVTLVGGLSMGWYAFGKSNHQMK*