AlfalfaGEDB | Msa0483270

M. sativa cultivar zhongmu-4 / Msa0483270

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483270	XP_013450824.2	90.347	259	4	1	1	259	1	238	7.79e-164	465

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483270	sp\|Q02283\|HAT5_ARATH	57.198	257	74	6	1	251	1	227	2.11e-82	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483270	A0A072U6Z4	90.347	259	4	1	1	259	1	238	4.67e-164	465

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TFs/TRs:

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Gene ID	Type	Classification
Msa0483270	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0483270	Msa0934970	0.868515	6.165188e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483270	MtrunA17_Chr6g0450991	90.347	259	4	1	1	259	1	238	8.98e-168	465
Msa0483270	MtrunA17_Chr5g0415941	58.451	142	44	4	39	168	51	189	1.33e-42	147
Msa0483270	MtrunA17_Chr4g0060031	38.095	294	121	11	1	249	1	278	9.29e-42	145
Msa0483270	MtrunA17_Chr8g0362751	72.043	93	26	0	63	155	85	177	4.68e-39	137
Msa0483270	MtrunA17_Chr8g0362151	51.748	143	57	3	22	164	44	174	1.56e-38	135
Msa0483270	MtrunA17_Chr6g0453021	49.324	148	74	1	15	162	45	191	1.61e-37	133
Msa0483270	MtrunA17_Chr8g0381741	48.077	156	63	2	32	182	32	174	2.67e-37	133
Msa0483270	MtrunA17_Chr5g0416391	56.154	130	49	1	43	164	45	174	6.28e-37	132
Msa0483270	MtrunA17_Chr3g0119291	57.812	128	50	2	52	177	42	167	5.90e-36	128
Msa0483270	MtrunA17_Chr3g0123691	65.306	98	34	0	66	163	59	156	6.37e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483270	AT3G01470.1	57.198	257	74	6	1	251	1	227	2.15e-83	251
Msa0483270	AT2G22430.1	56.391	133	44	1	66	184	61	193	6.25e-39	138
Msa0483270	AT4G40060.1	62.727	110	41	0	53	162	45	154	1.30e-38	137
Msa0483270	AT5G15150.1	71.111	90	26	0	66	155	114	203	6.12e-36	130
Msa0483270	AT5G65310.2	62.000	100	38	0	64	163	51	150	1.30e-35	129
Msa0483270	AT5G65310.1	62.000	100	38	0	64	163	69	168	1.95e-35	129
Msa0483270	AT1G69780.1	61.765	102	37	1	56	155	72	173	2.41e-35	128
Msa0483270	AT3G01220.1	63.918	97	35	0	66	162	86	182	1.11e-33	124
Msa0483270	AT1G26960.1	49.286	140	62	3	29	165	36	169	5.24e-32	118
Msa0483270	AT1G27045.5	57.576	99	42	0	67	165	25	123	6.53e-31	114

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Find 120 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCATCTCCGGCCAC+CGG	0.557370	3_3:+91314703	Msa0483270:five_prime_UTR
AAAAGATCATTAACTTATGA+CGG	0.515704	3_3:-91314877	None:intergenic
AAAATCTGAGCTATGTCCAC+TGG	0.550742	3_3:-91317541	None:intergenic
AAACTCCAGCAAGGTTGCTT+TGG	0.365281	3_3:+91314840	Msa0483270:five_prime_UTR
AAATGAAAGGTAAAATCAGA+GGG	0.611184	3_3:-91318063	None:intergenic
AAATTTCCACTTACCAAAGA+AGG	0.478182	3_3:+91317144	Msa0483270:CDS
AACAACCATGAAGAGAGGAG+AGG	0.684340	3_3:+91317792	Msa0483270:three_prime_UTR
AACAATGACACCAACGACAC+GGG	0.527406	3_3:-91317632	None:intergenic
AACATATGATTCCATTACTA+AGG	0.392206	3_3:+91316761	Msa0483270:CDS
AACATGAACATGCTGTTTCT+TGG	0.235472	3_3:+91315120	Msa0483270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCAAAACTTCACGTTAA+AGG	-	chr3_3:91315038-91315057	None:intergenic	30.0%
AAGAATGGTATTTGTTTGGA+TGG	+	chr3_3:91315260-91315279	Msa0483270:intron	30.0%
ACTTGATCGTGTATCAAATT+TGG	+	chr3_3:91315475-91315494	Msa0483270:intron	30.0%
CTTGATCGTGTATCAAATTT+GGG	+	chr3_3:91315476-91315495	Msa0483270:intron	30.0%
AAAACGAGTGTAAATTGATG+AGG	+	chr3_3:91315700-91315719	Msa0483270:intron	30.0%
TGCAATATGTGTGAAAAATG+AGG	+	chr3_3:91316044-91316063	Msa0483270:intron	30.0%
GCAATATGTGTGAAAAATGA+GGG	+	chr3_3:91316045-91316064	Msa0483270:intron	30.0%
TTGTCTCTTGTAAAAAGGAT+CGG	-	chr3_3:91316153-91316172	None:intergenic	30.0%
CCCATTTATCTCTTGTAAAA+AGG	+	chr3_3:91316237-91316256	Msa0483270:intron	30.0%
TTATCTCTTGTAAAAAGGAC+CGG	+	chr3_3:91316242-91316261	Msa0483270:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	91314638	91318092	91314638	ID=Msa0483270;Name=Msa0483270
chr3_3	mRNA	91314638	91318092	91314638	ID=Msa0483270-mRNA-1;Parent=Msa0483270;Name=Msa0483270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=434\|0.5\|0.8\|0.8\|1\|1\|5\|378\|261
chr3_3	exon	91314638	91315165	91314638	ID=Msa0483270-mRNA-1:exon:26652;Parent=Msa0483270-mRNA-1
chr3_3	exon	91315758	91315888	91315758	ID=Msa0483270-mRNA-1:exon:26653;Parent=Msa0483270-mRNA-1
chr3_3	exon	91316567	91316806	91316567	ID=Msa0483270-mRNA-1:exon:26654;Parent=Msa0483270-mRNA-1
chr3_3	exon	91317126	91317188	91317126	ID=Msa0483270-mRNA-1:exon:26655;Parent=Msa0483270-mRNA-1
chr3_3	exon	91317457	91318092	91317457	ID=Msa0483270-mRNA-1:exon:26656;Parent=Msa0483270-mRNA-1
chr3_3	five_prime_UTR	91314638	91315071	91314638	ID=Msa0483270-mRNA-1:five_prime_utr;Parent=Msa0483270-mRNA-1
chr3_3	CDS	91315072	91315165	91315072	ID=Msa0483270-mRNA-1:cds;Parent=Msa0483270-mRNA-1
chr3_3	CDS	91315758	91315888	91315758	ID=Msa0483270-mRNA-1:cds;Parent=Msa0483270-mRNA-1
chr3_3	CDS	91316567	91316806	91316567	ID=Msa0483270-mRNA-1:cds;Parent=Msa0483270-mRNA-1
chr3_3	CDS	91317126	91317188	91317126	ID=Msa0483270-mRNA-1:cds;Parent=Msa0483270-mRNA-1
chr3_3	CDS	91317457	91317714	91317457	ID=Msa0483270-mRNA-1:cds;Parent=Msa0483270-mRNA-1
chr3_3	three_prime_UTR	91317715	91318092	91317715	ID=Msa0483270-mRNA-1:three_prime_utr;Parent=Msa0483270-mRNA-1

Gene Sequence

>Msa0483270

ATGGAGTCTGGTCGTCTTTACTTTGATTCTCCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGTGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAAGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGAACTCCATCATAAGAAGCAAATTTCCACTTACCAAAGAAGGTGATTGGGAGCTATCAAAGGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTTAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCTAGATTGA

Protein sequence

>Msa0483270

MESGRLYFDSPACRGNNMNMLFLGNADLGFRGRSMMSMGEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSENSIIRSKFPLTKEGDWELSKEVVSLNEKLQVQAKDMLEEPLLEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVALD*