AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934970 MtrunA17_Chr6g0450991 91.883 308 4 1 1 308 1 287 0.0 570
Msa0934970 MtrunA17_Chr5g0415941 58.451 142 44 4 39 168 51 189 5.42e-42 147
Msa0934970 MtrunA17_Chr4g0060031 38.095 294 121 11 1 249 1 278 3.10e-41 145
Msa0934970 MtrunA17_Chr8g0362751 72.043 93 26 0 63 155 85 177 1.94e-38 137
Msa0934970 MtrunA17_Chr8g0362151 51.748 143 57 3 22 164 44 174 5.01e-38 136
Msa0934970 MtrunA17_Chr6g0453021 61.261 111 42 1 52 162 82 191 5.03e-37 133
Msa0934970 MtrunA17_Chr8g0381741 48.077 156 63 2 32 182 32 174 5.51e-37 134
Msa0934970 MtrunA17_Chr5g0416391 56.154 130 49 1 43 164 45 174 2.10e-36 132
Msa0934970 MtrunA17_Chr3g0119291 56.391 133 54 2 47 177 37 167 1.25e-35 129
Msa0934970 MtrunA17_Chr3g0123691 65.306 98 34 0 66 163 59 156 2.08e-35 129
Msa0934970 MtrunA17_Chr7g0217111 56.250 112 45 2 52 162 67 175 9.22e-31 116
Msa0934970 MtrunA17_Chr7g0265521 57.143 98 35 1 66 163 62 152 6.13e-29 110
Msa0934970 MtrunA17_Chr1g0179581 58.889 90 30 1 66 155 27 109 1.87e-28 105
Msa0934970 MtrunA17_Chr8g0346251 58.537 82 34 0 71 152 45 126 2.47e-27 107
Msa0934970 MtrunA17_Chr3g0127511 57.471 87 37 0 69 155 40 126 2.76e-27 107
Msa0934970 MtrunA17_Chr5g0403701 60.274 73 29 0 67 139 53 125 6.81e-22 91.3
Msa0934970 MtrunA17_Chr5g0403691 60.274 73 29 0 67 139 53 125 2.58e-21 90.1
Msa0934970 MtrunA17_Chr1g0151971 49.000 100 51 0 64 163 127 226 2.76e-21 91.7
Msa0934970 MtrunA17_Chr4g0055851 46.364 110 50 2 52 161 107 207 3.12e-20 88.6
Msa0934970 MtrunA17_Chr4g0044091 48.352 91 47 0 64 154 62 152 6.07e-19 83.2
Msa0934970 MtrunA17_Chr4g0054421 50.000 88 44 0 67 154 127 214 2.29e-18 83.2
Msa0934970 MtrunA17_Chr5g0399491 47.222 108 48 2 54 161 125 223 2.55e-18 83.6
Msa0934970 MtrunA17_Chr7g0258831 47.525 101 46 1 61 161 154 247 2.81e-18 83.2
Msa0934970 MtrunA17_Chr8g0335131 48.864 88 45 0 67 154 146 233 2.96e-18 83.6
Msa0934970 MtrunA17_Chr5g0400781 50.000 88 44 0 67 154 123 210 4.52e-18 82.4
Msa0934970 MtrunA17_Chr4g0071411 45.361 97 48 1 70 166 91 182 9.86e-18 80.5
Msa0934970 MtrunA17_Chr3g0135331 46.739 92 49 0 67 158 145 236 2.00e-17 80.9
Msa0934970 MtrunA17_Chr1g0175651 46.535 101 47 1 61 161 148 241 3.22e-17 80.5
Msa0934970 MtrunA17_Chr2g0308611 47.368 95 43 1 67 161 200 287 4.91e-17 80.5
Msa0934970 MtrunA17_Chr2g0299031 43.182 88 50 0 67 154 82 169 3.52e-13 67.4
Msa0934970 MtrunA17_Chr8g0350321 38.318 107 50 3 56 160 105 197 6.13e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934970 AT3G01470.1 52.922 308 101 9 1 302 1 270 8.22e-91 271
Msa0934970 AT2G22430.1 56.391 133 44 1 66 184 61 193 1.65e-38 138
Msa0934970 AT4G40060.1 62.727 110 41 0 53 162 45 154 5.90e-38 136
Msa0934970 AT5G15150.1 71.111 90 26 0 66 155 114 203 1.93e-35 130
Msa0934970 AT5G65310.2 62.000 100 38 0 64 163 51 150 3.93e-35 129
Msa0934970 AT5G65310.1 62.000 100 38 0 64 163 69 168 5.71e-35 129
Msa0934970 AT1G69780.1 61.765 102 37 1 56 155 72 173 9.01e-35 128
Msa0934970 AT3G01220.1 63.918 97 35 0 66 162 86 182 2.23e-33 124
Msa0934970 AT1G26960.1 49.286 140 62 3 29 165 36 169 8.68e-32 119
Msa0934970 AT1G27045.2 57.576 99 42 0 67 165 17 115 1.65e-30 114
Msa0934970 AT1G27045.5 57.576 99 42 0 67 165 25 123 1.72e-30 114
Msa0934970 AT1G27045.3 57.576 99 42 0 67 165 25 123 1.72e-30 114
Msa0934970 AT1G27045.1 57.576 99 42 0 67 165 68 166 3.68e-30 114
Msa0934970 AT1G27045.4 50.000 138 63 2 67 200 68 203 8.44e-30 114
Msa0934970 AT2G46680.2 56.818 88 38 0 68 155 33 120 5.84e-29 112
Msa0934970 AT2G46680.1 56.818 88 38 0 68 155 33 120 6.57e-29 112
Msa0934970 AT3G61890.1 54.651 86 39 0 70 155 33 118 4.61e-27 106
Msa0934970 AT5G03790.2 48.333 120 51 2 67 186 77 185 1.68e-26 103
Msa0934970 AT4G36740.2 47.059 119 49 2 67 185 56 160 1.10e-25 102
Msa0934970 AT4G36740.1 47.059 119 49 2 67 185 55 159 1.13e-25 102
Msa0934970 AT5G03790.1 55.682 88 39 0 67 154 77 164 5.00e-25 100
Msa0934970 AT2G36610.1 46.218 119 45 3 66 172 70 181 6.58e-24 96.7
Msa0934970 AT2G18550.1 61.644 73 28 0 67 139 61 133 1.54e-23 96.7
Msa0934970 AT5G66700.1 53.061 98 42 1 67 160 71 168 2.53e-23 96.3
Msa0934970 AT5G53980.1 42.478 113 65 0 58 170 2 114 1.74e-20 86.7
Msa0934970 AT4G17460.1 46.226 106 50 1 56 161 124 222 5.07e-19 85.5
Msa0934970 AT2G22800.1 45.000 100 52 1 58 154 101 200 1.85e-18 84.0
Msa0934970 AT5G06710.1 47.525 101 46 1 61 161 184 277 8.05e-18 83.2
Msa0934970 AT5G47370.1 43.590 117 54 2 50 161 108 217 1.04e-17 82.0
Msa0934970 AT2G01430.1 45.098 102 53 1 56 154 125 226 1.57e-17 81.3
Msa0934970 AT4G37790.1 44.444 99 55 0 56 154 115 213 6.25e-17 79.7
Msa0934970 AT3G60390.1 46.939 98 45 1 64 161 159 249 8.67e-17 79.7
Msa0934970 AT2G44910.1 47.368 95 43 1 67 161 163 250 9.11e-17 79.7
Msa0934970 AT4G16780.1 44.211 95 46 1 67 161 129 216 4.39e-16 77.4
Msa0934970 AT2G01430.2 52.239 67 29 1 56 119 125 191 1.99e-14 71.6
Msa0934970 AT1G70920.2 46.591 88 47 0 67 154 39 126 6.09e-14 69.3
Msa0934970 AT1G70920.1 46.591 88 47 0 67 154 69 156 6.43e-14 69.7
Msa0934970 AT5G06710.4 56.897 58 25 0 61 118 184 241 5.23e-13 68.6
Msa0934970 AT1G73360.1 37.113 97 45 2 66 160 32 114 5.17e-11 63.9

Find 122 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGAAGCTTCTCATTTA+AGG 0.097700 6_3:+5240540 None:intergenic
ATTAGATACATCATGTAATT+TGG 0.108235 6_3:-5240126 Msa0934970:three_prime_UTR
ACTTCAAAACTTCACGTTAA+AGG 0.158934 6_3:+5242966 None:intergenic
AACATGAACATGCTGTTTCT+TGG 0.235472 6_3:-5242881 Msa0934970:CDS
ATCCTAGTTTCTTGGCCAAC+TGG 0.259750 6_3:+5241371 None:intergenic
TAGCTCCCAATCACCTTCTT+TGG 0.273141 6_3:+5240847 None:intergenic
ATCATGTAATTTGGGTGCTT+TGG 0.283043 6_3:-5240117 Msa0934970:three_prime_UTR
GACGCCATTGCCCAAATTAC+TGG 0.309489 6_3:+5240044 None:intergenic
TCATGTAATTTGGGTGCTTT+GGG 0.328486 6_3:-5240116 Msa0934970:three_prime_UTR
TCTGATTGAACTCTTTCAAT+AGG 0.332216 6_3:+5240298 None:intergenic
TTTCTTGGAAATGCTGATCT+TGG 0.335848 6_3:-5242866 Msa0934970:CDS
GTGGATGACCACATGAGTTC+TGG 0.344344 6_3:-5240430 Msa0934970:CDS
TCAGTGCCTCTCCCTCTTCA+TGG 0.347311 6_3:+5240203 None:intergenic
TGGAAATTTGCTTCTTATGA+TGG 0.352445 6_3:+5240874 None:intergenic
AGGTTGCAATCCTAGTTTCT+TGG 0.355925 6_3:+5241363 None:intergenic
TTAGATACATCATGTAATTT+GGG 0.364008 6_3:-5240125 Msa0934970:three_prime_UTR
AAACTCCAGCAAGGTTGCTT+TGG 0.365281 6_3:-5243161 Msa0934970:five_prime_UTR
CACTTACCAAAGAAGGTGAT+TGG 0.366662 6_3:-5240853 Msa0934970:CDS
AACATATGATTCCATTACTA+AGG 0.392206 6_3:-5241236 Msa0934970:CDS
GTTGTCCAAAGCAACCTTGC+TGG 0.395219 6_3:+5243156 None:intergenic
AATATTTCTATGATGGTTTG+TGG 0.412813 6_3:+5243098 None:intergenic
CCGATTCCGGTGGTCTTTGA+AGG 0.412824 6_3:+5243232 None:intergenic
TTATAGAAATATTTCTATGA+TGG 0.415029 6_3:+5243091 None:intergenic
AGAGAGAGGGAGCCTTCAAC+CGG 0.416452 6_3:+5243350 None:intergenic
GGAATCATATGTTGAAAGTA+GGG 0.419448 6_3:+5241246 None:intergenic
TTCAGAACCGTAGGGCTAGA+TGG 0.424104 6_3:-5241321 Msa0934970:CDS
CCTTCAAAGACCACCGGAAT+CGG 0.430687 6_3:-5243232 Msa0934970:five_prime_UTR
CAATCACCTTCTTTGGTAAG+TGG 0.430947 6_3:+5240854 None:intergenic
GTGAGGCGGCGCTTCTTCTC+CGG 0.438471 6_3:+5242141 None:intergenic
GAAGATGATGGGAGTGATGA+TGG 0.439088 6_3:-5240274 Msa0934970:CDS
TGGAATCATATGTTGAAAGT+AGG 0.440148 6_3:+5241245 None:intergenic
TGTTGAAAGTAGGGAATCAT+AGG 0.441815 6_3:+5241255 None:intergenic
TTTCTCATTCTCCTTAGTAA+TGG 0.443693 6_3:+5241225 None:intergenic
CAAAGCTCTTCTCCAACATA+TGG 0.449623 6_3:+5241428 None:intergenic
AACCTAGGCAGGTGGCTGTA+TGG 0.452751 6_3:-5241345 Msa0934970:CDS
GGAAGGAGAACGCCGGTGGC+CGG 0.458683 6_3:+5243286 None:intergenic
AAGAGGGAGAGGCACTGAAT+TGG 0.468712 6_3:-5240198 Msa0934970:CDS
TCCTAGTTTCTTGGCCAACT+GGG 0.472188 6_3:+5241372 None:intergenic
AGAACGCCGGTGGCCGGAGA+TGG 0.474737 6_3:+5243292 None:intergenic
TTTGGGTGCTTTGGGCGCCT+AGG 0.476188 6_3:-5240108 Msa0934970:three_prime_UTR
AGGGAGAGGCACTGAATTGG+TGG 0.476724 6_3:-5240195 Msa0934970:CDS
TCCTCATCATACAGTTCATC+CGG 0.477560 6_3:+5242183 None:intergenic
AAATTTCCACTTACCAAAGA+AGG 0.478182 6_3:-5240860 Msa0934970:CDS
TGAGCTATGTCCACTGGAAG+TGG 0.478436 6_3:+5240469 None:intergenic
GTTCAATCAGAGGAAGATGA+TGG 0.478448 6_3:-5240286 Msa0934970:CDS
ACTAGGATTGCAACCTAGGC+AGG 0.478866 6_3:-5241356 Msa0934970:CDS
CACAGAAAACACCCGGTTGA+AGG 0.485081 6_3:-5243362 Msa0934970:five_prime_UTR
AGAAACTAGGATTGCAACCT+AGG 0.487565 6_3:-5241360 Msa0934970:CDS
CGATTCCGGTGGTCTTTGAA+GGG 0.488176 6_3:+5243233 None:intergenic
AGATCCCATCATGCACTGTA+AGG 0.493831 6_3:+5243200 None:intergenic
ACTTACCAAAGAAGGTGATT+GGG 0.495751 6_3:-5240852 Msa0934970:CDS
TTTGATTCTCCTGCTTGTCG+TGG 0.496337 6_3:-5242908 Msa0934970:CDS
CACCGGCGTTCTCCTTCCTC+CGG 0.500855 6_3:-5243281 Msa0934970:five_prime_UTR
CTGTATGGTTTCAGAACCGT+AGG 0.504508 6_3:-5241330 Msa0934970:CDS
CACATGAGTTCTGGAAGCGT+TGG 0.505249 6_3:-5240421 Msa0934970:CDS
TTTACCTTACAGTGCATGAT+GGG 0.507423 6_3:-5243204 Msa0934970:five_prime_UTR
AAAAGATCATTAACTTATGA+CGG 0.515704 6_3:+5243124 None:intergenic
ACCCAGTTGGCCAAGAAACT+AGG 0.526542 6_3:-5241373 Msa0934970:CDS
AACAATGACACCAACGACAC+GGG 0.527406 6_3:+5240372 None:intergenic
CATCCAGCATAGTTGTCAGC+TGG 0.530440 6_3:+5240328 None:intergenic
TTGTCTTCCATCTAGCCCTA+CGG 0.531725 6_3:+5241314 None:intergenic
ATGTTATTCCCACGACAAGC+AGG 0.535589 6_3:+5242899 None:intergenic
TTTCCAGCTGACAACTATGC+TGG 0.536407 6_3:-5240331 Msa0934970:CDS
TTGATTCTCCTGCTTGTCGT+GGG 0.539519 6_3:-5242907 Msa0934970:CDS
GCGCCGCCTCACTTCCGAGC+AGG 0.539627 6_3:-5242130 Msa0934970:intron
AAGATGATGGGAGTGATGAT+GGG 0.542417 6_3:-5240273 Msa0934970:CDS
GGAAGGTCAATGATGAGCAT+GGG 0.542750 6_3:-5242240 Msa0934970:CDS
TTCAATCAGAGGAAGATGAT+GGG 0.547251 6_3:-5240285 Msa0934970:CDS
AAAATCTGAGCTATGTCCAC+TGG 0.550742 6_3:+5240463 None:intergenic
AGGCAAGCAACCAACCTGCT+CGG 0.554902 6_3:+5242116 None:intergenic
AAAACTCCATCTCCGGCCAC+CGG 0.557370 6_3:-5243298 Msa0934970:five_prime_UTR
CTGAAGGGTTTACCGGAGGA+AGG 0.563770 6_3:+5243269 None:intergenic
AACCTTGCTGGAGTTTCTAA+CGG 0.564569 6_3:+5243168 None:intergenic
AGGAAGGTCAATGATGAGCA+TGG 0.567797 6_3:-5242241 Msa0934970:CDS
GAGACCTTTCTTTAGCTCAC+CGG 0.569954 6_3:-5242202 Msa0934970:CDS
CAACAATGACACCAACGACA+CGG 0.575613 6_3:+5240371 None:intergenic
AACCATACAGCCACCTGCCT+AGG 0.579439 6_3:+5241343 None:intergenic
AAGTCCAGTAATTTGGGCAA+TGG 0.579629 6_3:-5240048 Msa0934970:three_prime_UTR
TATGTTGGAGAAGAGCTTTG+AGG 0.579800 6_3:-5241425 Msa0934970:CDS
CTTTAGTCACAGAAAACACC+CGG 0.581401 6_3:-5243369 None:intergenic
GGGAGAGGCACTGAATTGGT+GGG 0.586237 6_3:-5240194 Msa0934970:CDS
GGTGTGTGCGTGCGAGAGAG+AGG 0.587148 6_3:+5243336 None:intergenic
TCACCGGAAAACTCCATCTC+CGG 0.587179 6_3:-5243305 Msa0934970:five_prime_UTR
GAAATGAAAGGTAAAATCAG+AGG 0.588163 6_3:+5239937 None:intergenic
TCATCCGGTGAGCTAAAGAA+AGG 0.588529 6_3:+5242198 None:intergenic
TGATGAATAGGTCCATATGT+TGG 0.590134 6_3:-5241440 Msa0934970:intron
AACCAACCTGCTCGGAAGTG+AGG 0.594175 6_3:+5242124 None:intergenic
AGGTGATTGGGAGCTATCAA+AGG 0.596262 6_3:-5240840 Msa0934970:CDS
ACATAACCATGAAGAGGGAG+AGG 0.603541 6_3:-5240209 Msa0934970:CDS
GTGTGTGCGTGCGAGAGAGA+GGG 0.607865 6_3:+5243337 None:intergenic
AAATGAAAGGTAAAATCAGA+GGG 0.611184 6_3:+5239938 None:intergenic
GAAAGCTGATCCACTTCCAG+TGG 0.611490 6_3:-5240479 Msa0934970:CDS
TCAAAGACCACCGGAATCGG+TGG 0.614461 6_3:-5243229 Msa0934970:five_prime_UTR
AGAACAAACTTGAGCCAGAG+AGG 0.615094 6_3:-5241399 Msa0934970:CDS
CAACCTGCTCGGAAGTGAGG+CGG 0.622855 6_3:+5242127 None:intergenic
GAAGGTCAATGATGAGCATG+GGG 0.623217 6_3:-5242239 Msa0934970:CDS
ACAATGACACCAACGACACG+GGG 0.624556 6_3:+5240373 None:intergenic
TGAATCCCTTCAAAGACCAC+CGG 0.626499 6_3:-5243238 Msa0934970:five_prime_UTR
GCCAGAGAGGAAAACCCAGT+TGG 0.627216 6_3:-5241386 Msa0934970:CDS
TGAGCAACATAACCATGAAG+AGG 0.628182 6_3:-5240215 Msa0934970:CDS
GAATGAGAAACTCAAATCTG+AGG 0.629755 6_3:-5241212 Msa0934970:intron
GGAGAGGCACTGAATTGGTG+GGG 0.631899 6_3:-5240193 Msa0934970:CDS
GAGAGAGGGAGCCTTCAACC+GGG 0.633151 6_3:+5243351 None:intergenic
AAGCGTTGGAAGTGCAGTGG+TGG 0.633588 6_3:-5240407 Msa0934970:CDS
CAACGCTTCCAGAACTCATG+TGG 0.634732 6_3:+5240422 None:intergenic
GAGCAACATAACCATGAAGA+GGG 0.640168 6_3:-5240214 Msa0934970:CDS
ACCGGATGAACTGTATGATG+AGG 0.641946 6_3:-5242184 Msa0934970:CDS
TGACAACTATGCTGGATGTG+TGG 0.645273 6_3:-5240323 Msa0934970:CDS
CGGAGGAAGGAGAACGCCGG+TGG 0.651258 6_3:+5243282 None:intergenic
GTACTACGAAGAACAGTCAC+CGG 0.657008 6_3:-5242160 Msa0934970:CDS
AGGATTGCAACCTAGGCAGG+TGG 0.665303 6_3:-5241353 Msa0934970:CDS
TGGAAGCGTTGGAAGTGCAG+TGG 0.670661 6_3:-5240410 Msa0934970:CDS
ATGATGGGAGTGATGATGGG+AGG 0.679048 6_3:-5240270 Msa0934970:CDS
GTCCGTTAGAAACTCCAGCA+AGG 0.680090 6_3:-5243170 Msa0934970:five_prime_UTR
TATTGAAAGAGTTCAATCAG+AGG 0.686434 6_3:-5240296 Msa0934970:CDS
TTAGAGACATTTCAACACCT+AGG 0.688285 6_3:+5240091 None:intergenic
TGTATGGTTTCAGAACCGTA+GGG 0.689319 6_3:-5241329 Msa0934970:CDS
TGAACTGAAGGGTTTACCGG+AGG 0.690682 6_3:+5243265 None:intergenic
TGATTGGGAGCTATCAAAGG+AGG 0.691655 6_3:-5240837 Msa0934970:intron
TACCGGAGGAAGGAGAACGC+CGG 0.715230 6_3:+5243279 None:intergenic
CAATGACACCAACGACACGG+GGG 0.756439 6_3:+5240374 None:intergenic
AAGGTCAATGATGAGCATGG+GGG 0.757009 6_3:-5242238 Msa0934970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAATATCAAGTT+TGG - chr6_3:5240222-5240241 Msa0934970:CDS 10.0%
!!! ATTAAAATCAAATGTTTTAA+TGG - chr6_3:5242159-5242178 Msa0934970:CDS 10.0%
!!! TTATAGAAATATTTCTATGA+TGG + chr6_3:5240206-5240225 None:intergenic 15.0%
!! TACAAACACTAATAAATAAA+TGG + chr6_3:5241421-5241440 None:intergenic 15.0%
!!! ATTTTTTTTAAGTACAACAA+AGG + chr6_3:5243275-5243294 None:intergenic 15.0%
!! AAAAGATCATTAACTTATGA+CGG + chr6_3:5240173-5240192 None:intergenic 20.0%
!!! CTTAATCTATTGAGTTTTTA+TGG - chr6_3:5240467-5240486 Msa0934970:CDS 20.0%
!! TACAATCCAAAAAAACAAAA+TGG + chr6_3:5240495-5240514 None:intergenic 20.0%
!!! TTTTTTGGATTGTAAATTGT+TGG - chr6_3:5240501-5240520 Msa0934970:CDS 20.0%
!!! TGATTTGATTTGATTTGATT+TGG - chr6_3:5240727-5240746 Msa0934970:intron 20.0%
!!! GATTTGATTTGATTTGATTT+GGG - chr6_3:5240728-5240747 Msa0934970:intron 20.0%
!!! TTGATTTGAGTTTTTGTTAA+AGG - chr6_3:5240816-5240835 Msa0934970:intron 20.0%
!!! TGTTTATTAGTTTTAGTGAT+TGG - chr6_3:5241589-5241608 Msa0934970:intron 20.0%
!! ATATATGCAAATTGAGAATT+TGG - chr6_3:5242274-5242293 Msa0934970:intron 20.0%
!! ATTAGTGTTATGCATTAAAA+AGG - chr6_3:5242311-5242330 Msa0934970:intron 20.0%
!! AATATAGTGTAGAATCTTAT+GGG + chr6_3:5242488-5242507 None:intergenic 20.0%
!! TAATATAGTGTAGAATCTTA+TGG + chr6_3:5242489-5242508 None:intergenic 20.0%
!!! ACTAATGAGTTTTTTAAAAG+AGG - chr6_3:5242642-5242661 Msa0934970:intron 20.0%
!!! CTAATGAGTTTTTTAAAAGA+GGG - chr6_3:5242643-5242662 Msa0934970:intron 20.0%
!! ATTAGATACATCATGTAATT+TGG - chr6_3:5243168-5243187 Msa0934970:five_prime_UTR 20.0%
!! TTAGATACATCATGTAATTT+GGG - chr6_3:5243169-5243188 Msa0934970:five_prime_UTR 20.0%
!!! ACTTTTTATTTTACTAAGCT+TGG + chr6_3:5243230-5243249 None:intergenic 20.0%
!! AAATAAAAAGTCCAGTAATT+TGG - chr6_3:5243239-5243258 Msa0934970:five_prime_UTR 20.0%
!! AATAAAAAGTCCAGTAATTT+GGG - chr6_3:5243240-5243259 Msa0934970:five_prime_UTR 20.0%
!! AATATTTCTATGATGGTTTG+TGG + chr6_3:5240199-5240218 None:intergenic 25.0%
!! GAAGTTTGAAGTTGAAAAAA+TGG - chr6_3:5240346-5240365 Msa0934970:CDS 25.0%
!!! ATGGTACCATTTTGTTTTTT+TGG - chr6_3:5240486-5240505 Msa0934970:CDS 25.0%
!!! AAATTGTTGGTTTTGTTGTT+TGG - chr6_3:5240514-5240533 Msa0934970:CDS 25.0%
!!! TTGCTTTGTTTTGTTAAGAA+TGG - chr6_3:5240538-5240557 Msa0934970:CDS 25.0%
! TGTTAAGAATGGTATTTGTT+TGG - chr6_3:5240549-5240568 Msa0934970:CDS 25.0%
!!! TTGATTTTATGAGTTGAGTT+AGG - chr6_3:5240654-5240673 Msa0934970:intron 25.0%
!!! GAGATTTTCTTTTTTTGGTT+AGG - chr6_3:5240696-5240715 Msa0934970:intron 25.0%
!!! TTTGATTTGATTTGGGTTTT+TGG - chr6_3:5240735-5240754 Msa0934970:intron 25.0%
!! AGTGTTATGATTTGTGATAT+AGG - chr6_3:5240950-5240969 Msa0934970:intron 25.0%
!!! GAATTTTTTTGAATGAAAGC+AGG - chr6_3:5241033-5241052 Msa0934970:intron 25.0%
! AAACATATCCAAATTCATTC+AGG + chr6_3:5241205-5241224 None:intergenic 25.0%
!!! TCAACTAAAGTTGATGTATT+TGG - chr6_3:5241475-5241494 Msa0934970:intron 25.0%
!!! TCAACTAAAGTTGATGTATT+TGG + chr6_3:5241475-5241494 None:intergenic 25.0%
!! CCTTTTTACAAGAGATAAAT+GGG + chr6_3:5241537-5241556 None:intergenic 25.0%
!! TCCTTTTTACAAGAGATAAA+TGG + chr6_3:5241538-5241557 None:intergenic 25.0%
!!! TTAGTTTTAGTGATTGGTTA+AGG - chr6_3:5241595-5241614 Msa0934970:intron 25.0%
! TTTGTGATTAACTAACTTTG+TGG - chr6_3:5241829-5241848 Msa0934970:intron 25.0%
! AACATATGATTCCATTACTA+AGG - chr6_3:5242058-5242077 Msa0934970:intron 25.0%
! AAATTGTCTGTCAAAAGTTA+TGG - chr6_3:5242349-5242368 Msa0934970:intron 25.0%
! AATTGTCTGTCAAAAGTTAT+GGG - chr6_3:5242350-5242369 Msa0934970:intron 25.0%
!!! TTTTTAAAAGAGGGTATGAA+AGG - chr6_3:5242652-5242671 Msa0934970:intron 25.0%
! ACCATAAAATAGTTAACAAG+TGG - chr6_3:5242678-5242697 Msa0934970:intron 25.0%
!!! TCCACTTGTTAACTATTTTA+TGG + chr6_3:5242682-5242701 None:intergenic 25.0%
! AAATGAAAGGTAAAATCAGA+GGG + chr6_3:5243359-5243378 None:intergenic 25.0%
ACTTCAAAACTTCACGTTAA+AGG + chr6_3:5240331-5240350 None:intergenic 30.0%
AAGAATGGTATTTGTTTGGA+TGG - chr6_3:5240553-5240572 Msa0934970:intron 30.0%
ACTTGATCGTGTATCAAATT+TGG - chr6_3:5240769-5240788 Msa0934970:intron 30.0%
CTTGATCGTGTATCAAATTT+GGG - chr6_3:5240770-5240789 Msa0934970:intron 30.0%
! TTTTGTTAAAGGAAGCAACT+TGG - chr6_3:5240827-5240846 Msa0934970:intron 30.0%
AAAACGAGTGTAAATTGATG+AGG - chr6_3:5240997-5241016 Msa0934970:intron 30.0%
!!! TTTTTTGAATGAAAGCAGGA+AGG - chr6_3:5241037-5241056 Msa0934970:intron 30.0%
TGCAATATGTGTGAAAAATG+AGG - chr6_3:5241341-5241360 Msa0934970:CDS 30.0%
GCAATATGTGTGAAAAATGA+GGG - chr6_3:5241342-5241361 Msa0934970:CDS 30.0%
TTGTCTCTTGTAAAAAGGAT+CGG + chr6_3:5241450-5241469 None:intergenic 30.0%
! TCCTTTTTACAAGAGACAAA+TGG - chr6_3:5241451-5241470 Msa0934970:intron 30.0%
! CCTTTTTACAAGAGACAAAT+GGG - chr6_3:5241452-5241471 Msa0934970:intron 30.0%
CCCATTTATCTCTTGTAAAA+AGG - chr6_3:5241534-5241553 Msa0934970:intron 30.0%
TTATCTCTTGTAAAAAGGAC+CGG - chr6_3:5241539-5241558 Msa0934970:intron 30.0%
!!! TAGTTTTGATATACTCCATC+CGG + chr6_3:5241561-5241580 None:intergenic 30.0%
TCAGTATAAGAGAAAAAGAC+TGG + chr6_3:5241732-5241751 None:intergenic 30.0%
TACTGAAAATATTTAGTCCC+CGG - chr6_3:5241746-5241765 Msa0934970:intron 30.0%
TCATCAATCTAGTTGATCTA+CGG + chr6_3:5241785-5241804 None:intergenic 30.0%
AACTTTGTGGTTTGATGAAT+AGG - chr6_3:5241842-5241861 Msa0934970:intron 30.0%
GGAATCATATGTTGAAAGTA+GGG + chr6_3:5242051-5242070 None:intergenic 30.0%
TGGAATCATATGTTGAAAGT+AGG + chr6_3:5242052-5242071 None:intergenic 30.0%
TTTCTCATTCTCCTTAGTAA+TGG + chr6_3:5242072-5242091 None:intergenic 30.0%
!!! CAAATGTTTTAATGGTCTGA+CGG - chr6_3:5242167-5242186 Msa0934970:CDS 30.0%
TCTGTATAGGATAGAATTAG+TGG - chr6_3:5242381-5242400 Msa0934970:intron 30.0%
! TGGAAATTTGCTTCTTATGA+TGG + chr6_3:5242423-5242442 None:intergenic 30.0%
AAATTTCCACTTACCAAAGA+AGG - chr6_3:5242434-5242453 Msa0934970:intron 30.0%
! TTCGCATAGTTACTTTGAAA+AGG + chr6_3:5242570-5242589 None:intergenic 30.0%
! TAACATGTTGACTATTTCAC+AGG - chr6_3:5242725-5242744 Msa0934970:intron 30.0%
AACTTGAAGCTTCTCATTTA+AGG + chr6_3:5242757-5242776 None:intergenic 30.0%
! TCAGCTTTCTTTTCTAACAA+AGG + chr6_3:5242804-5242823 None:intergenic 30.0%
TCTGATTGAACTCTTTCAAT+AGG + chr6_3:5242999-5243018 None:intergenic 30.0%
TATTGAAAGAGTTCAATCAG+AGG - chr6_3:5242998-5243017 Msa0934970:five_prime_UTR 30.0%
GAAATGAAAGGTAAAATCAG+AGG + chr6_3:5243360-5243379 None:intergenic 30.0%
! TTTTGAACTGAAGGGTTTAC+CGG + chr6_3:5240035-5240054 None:intergenic 35.0%
!!! GGATTCAGTTTTGAACTGAA+GGG + chr6_3:5240043-5240062 None:intergenic 35.0%
! TTTTACCTTACAGTGCATGA+TGG - chr6_3:5240089-5240108 Msa0934970:three_prime_UTR 35.0%
TTTACCTTACAGTGCATGAT+GGG - chr6_3:5240090-5240109 Msa0934970:three_prime_UTR 35.0%
GAAGTTGAAAAAATGGAGTC+TGG - chr6_3:5240353-5240372 Msa0934970:CDS 35.0%
!! AACATGAACATGCTGTTTCT+TGG - chr6_3:5240413-5240432 Msa0934970:CDS 35.0%
TTTCTTGGAAATGCTGATCT+TGG - chr6_3:5240428-5240447 Msa0934970:CDS 35.0%
ATGGTATTTGTTTGGATGGT+TGG - chr6_3:5240557-5240576 Msa0934970:intron 35.0%
TATTTGTTTGGATGGTTGGT+GGG - chr6_3:5240561-5240580 Msa0934970:intron 35.0%
TTATACTGAACACCTTCACT+CGG + chr6_3:5240629-5240648 None:intergenic 35.0%
! ATGAGTTGAGTTAGGTCTTA+TGG - chr6_3:5240662-5240681 Msa0934970:intron 35.0%
! GGTGGGAGATTTTCTTTTTT+TGG - chr6_3:5240691-5240710 Msa0934970:intron 35.0%
CTTGGTTGTGCATCAAAATT+TGG - chr6_3:5240845-5240864 Msa0934970:CDS 35.0%
ATATCCAAATTCATTCAGGC+AGG + chr6_3:5241201-5241220 None:intergenic 35.0%
CTAATTGCTGACGAGAAAAA+TGG + chr6_3:5241282-5241301 None:intergenic 35.0%
CCCATTTGTCTCTTGTAAAA+AGG + chr6_3:5241455-5241474 None:intergenic 35.0%
! GATTGGTTAAGGAGAAGTTT+AGG - chr6_3:5241606-5241625 Msa0934970:intron 35.0%
GGTGACTGAAAATTTCCAAT+AGG - chr6_3:5241650-5241669 Msa0934970:intron 35.0%
CATCAATCTAGTTGATCTAC+GGG + chr6_3:5241784-5241803 None:intergenic 35.0%
TGATGAATAGGTCCATATGT+TGG - chr6_3:5241854-5241873 Msa0934970:intron 35.0%
TGTTGAAAGTAGGGAATCAT+AGG + chr6_3:5242042-5242061 None:intergenic 35.0%
GAATGAGAAACTCAAATCTG+AGG - chr6_3:5242082-5242101 Msa0934970:intron 35.0%
! ATGGGTTTGAGTTTCTGTAT+AGG - chr6_3:5242368-5242387 Msa0934970:intron 35.0%
ACTTACCAAAGAAGGTGATT+GGG - chr6_3:5242442-5242461 Msa0934970:intron 35.0%
TAGTGTAGAATCTTATGGGT+AGG + chr6_3:5242484-5242503 None:intergenic 35.0%
! TTAAAAGAGGGTATGAAAGG+TGG - chr6_3:5242655-5242674 Msa0934970:intron 35.0%
TTCAATCAGAGGAAGATGAT+GGG - chr6_3:5243009-5243028 Msa0934970:five_prime_UTR 35.0%
ATCATGTAATTTGGGTGCTT+TGG - chr6_3:5243177-5243196 Msa0934970:five_prime_UTR 35.0%
TCATGTAATTTGGGTGCTTT+GGG - chr6_3:5243178-5243197 Msa0934970:five_prime_UTR 35.0%
TTAGAGACATTTCAACACCT+AGG + chr6_3:5243206-5243225 None:intergenic 35.0%
! AGTTTTCCGGTGAGGTTTTT+TGG + chr6_3:5239982-5240001 None:intergenic 40.0%
!!! GGGATTCAGTTTTGAACTGA+AGG + chr6_3:5240044-5240063 None:intergenic 40.0%
!! AAGGTAAAAACCACCGATTC+CGG + chr6_3:5240078-5240097 None:intergenic 40.0%
AACCTTGCTGGAGTTTCTAA+CGG + chr6_3:5240129-5240148 None:intergenic 40.0%
!! AATGCTGATCTTGGTTTTCG+TGG - chr6_3:5240437-5240456 Msa0934970:CDS 40.0%
GTATTTGTTTGGATGGTTGG+TGG - chr6_3:5240560-5240579 Msa0934970:intron 40.0%
TATACTGAACACCTTCACTC+GGG + chr6_3:5240628-5240647 None:intergenic 40.0%
! AGTTAGGTCTTATGGACAGA+TGG - chr6_3:5240670-5240689 Msa0934970:intron 40.0%
TCCTCATCATACAGTTCATC+CGG + chr6_3:5241114-5241133 None:intergenic 40.0%
CTCTTGTAAAAAGGATCGGA+GGG + chr6_3:5241446-5241465 None:intergenic 40.0%
TCTCTTGTAAAAAGGATCGG+AGG + chr6_3:5241447-5241466 None:intergenic 40.0%
TGGTTAAGGAGAAGTTTAGG+TGG - chr6_3:5241609-5241628 Msa0934970:intron 40.0%
! GAAATTTTCAGTCACCAGAG+AGG + chr6_3:5241646-5241665 None:intergenic 40.0%
AAAATATTTAGTCCCCGGAG+AGG - chr6_3:5241751-5241770 Msa0934970:intron 40.0%
ATCTAGTTGATCTACGGGTT+TGG + chr6_3:5241779-5241798 None:intergenic 40.0%
CAAAGCTCTTCTCCAACATA+TGG + chr6_3:5241869-5241888 None:intergenic 40.0%
TATGTTGGAGAAGAGCTTTG+AGG - chr6_3:5241869-5241888 Msa0934970:intron 40.0%
AGGTTGCAATCCTAGTTTCT+TGG + chr6_3:5241934-5241953 None:intergenic 40.0%
AGAAACTAGGATTGCAACCT+AGG - chr6_3:5241934-5241953 Msa0934970:intron 40.0%
TGTATGGTTTCAGAACCGTA+GGG - chr6_3:5241965-5241984 Msa0934970:intron 40.0%
CAATCACCTTCTTTGGTAAG+TGG + chr6_3:5242443-5242462 None:intergenic 40.0%
CACTTACCAAAGAAGGTGAT+TGG - chr6_3:5242441-5242460 Msa0934970:intron 40.0%
!! AAAGGCTTTTTCTTCACACC+AGG + chr6_3:5242552-5242571 None:intergenic 40.0%
! CATGTTGACTATTTCACAGG+TGG - chr6_3:5242728-5242747 Msa0934970:intron 40.0%
AAAATCTGAGCTATGTCCAC+TGG + chr6_3:5242834-5242853 None:intergenic 40.0%
! AGCTCAGATTTTCAGCATCA+AGG - chr6_3:5242842-5242861 Msa0934970:intron 40.0%
! TCAGATTTTCAGCATCAAGG+TGG - chr6_3:5242845-5242864 Msa0934970:intron 40.0%
GTTCAATCAGAGGAAGATGA+TGG - chr6_3:5243008-5243027 Msa0934970:five_prime_UTR 40.0%
!! AAGATGATGGGAGTGATGAT+GGG - chr6_3:5243021-5243040 Msa0934970:five_prime_UTR 40.0%
TGAGCAACATAACCATGAAG+AGG - chr6_3:5243079-5243098 Msa0934970:five_prime_UTR 40.0%
GAGCAACATAACCATGAAGA+GGG - chr6_3:5243080-5243099 Msa0934970:five_prime_UTR 40.0%
AAGTCCAGTAATTTGGGCAA+TGG - chr6_3:5243246-5243265 Msa0934970:five_prime_UTR 40.0%
CACACACCAAAAAACCTCAC+CGG - chr6_3:5239973-5239992 Msa0934970:three_prime_UTR 45.0%
TGAATCCCTTCAAAGACCAC+CGG - chr6_3:5240056-5240075 Msa0934970:three_prime_UTR 45.0%
AGATCCCATCATGCACTGTA+AGG + chr6_3:5240097-5240116 None:intergenic 45.0%
AAACTCCAGCAAGGTTGCTT+TGG - chr6_3:5240133-5240152 Msa0934970:three_prime_UTR 45.0%
TTTGATTCTCCTGCTTGTCG+TGG - chr6_3:5240386-5240405 Msa0934970:CDS 45.0%
TTGATTCTCCTGCTTGTCGT+GGG - chr6_3:5240387-5240406 Msa0934970:CDS 45.0%
ATGTTATTCCCACGACAAGC+AGG + chr6_3:5240398-5240417 None:intergenic 45.0%
CTCAGTTGTGTGTGAGTTTC+AGG + chr6_3:5240590-5240609 None:intergenic 45.0%
CACACACAACTGAGAAGTTC+AGG - chr6_3:5240596-5240615 Msa0934970:intron 45.0%
! TAGGTCTTATGGACAGATGG+TGG - chr6_3:5240673-5240692 Msa0934970:intron 45.0%
! AGGTCTTATGGACAGATGGT+GGG - chr6_3:5240674-5240693 Msa0934970:intron 45.0%
AGGAAGGTCAATGATGAGCA+TGG - chr6_3:5241053-5241072 Msa0934970:intron 45.0%
GGAAGGTCAATGATGAGCAT+GGG - chr6_3:5241054-5241073 Msa0934970:intron 45.0%
GAAGGTCAATGATGAGCATG+GGG - chr6_3:5241055-5241074 Msa0934970:intron 45.0%
AAGGTCAATGATGAGCATGG+GGG - chr6_3:5241056-5241075 Msa0934970:intron 45.0%
! GAGACCTTTCTTTAGCTCAC+CGG - chr6_3:5241092-5241111 Msa0934970:intron 45.0%
TCATCCGGTGAGCTAAAGAA+AGG + chr6_3:5241099-5241118 None:intergenic 45.0%
ACCGGATGAACTGTATGATG+AGG - chr6_3:5241110-5241129 Msa0934970:intron 45.0%
GTACTACGAAGAACAGTCAC+CGG - chr6_3:5241134-5241153 Msa0934970:intron 45.0%
CTTGCCTGCCTGAATGAATT+TGG - chr6_3:5241194-5241213 Msa0934970:intron 45.0%
CTCTTGTAAAAAGGACCGGA+TGG - chr6_3:5241543-5241562 Msa0934970:intron 45.0%
TCAGTCACCAGAGAGGATTT+GGG + chr6_3:5241639-5241658 None:intergenic 45.0%
TTCAGTCACCAGAGAGGATT+TGG + chr6_3:5241640-5241659 None:intergenic 45.0%
CCAGTCTTACTCGATCCTAT+TGG + chr6_3:5241668-5241687 None:intergenic 45.0%
CCAATAGGATCGAGTAAGAC+TGG - chr6_3:5241665-5241684 Msa0934970:intron 45.0%
TAGGATCGAGTAAGACTGGT+TGG - chr6_3:5241669-5241688 Msa0934970:intron 45.0%
! AGGATCGAGTAAGACTGGTT+GGG - chr6_3:5241670-5241689 Msa0934970:intron 45.0%
AGAACAAACTTGAGCCAGAG+AGG - chr6_3:5241895-5241914 Msa0934970:intron 45.0%
TCCTAGTTTCTTGGCCAACT+GGG + chr6_3:5241925-5241944 None:intergenic 45.0%
ATCCTAGTTTCTTGGCCAAC+TGG + chr6_3:5241926-5241945 None:intergenic 45.0%
CTGTATGGTTTCAGAACCGT+AGG - chr6_3:5241964-5241983 Msa0934970:intron 45.0%
TTGTCTTCCATCTAGCCCTA+CGG + chr6_3:5241983-5242002 None:intergenic 45.0%
TAGCTCCCAATCACCTTCTT+TGG + chr6_3:5242450-5242469 None:intergenic 45.0%
AGGTGATTGGGAGCTATCAA+AGG - chr6_3:5242454-5242473 Msa0934970:intron 45.0%
TGATTGGGAGCTATCAAAGG+AGG - chr6_3:5242457-5242476 Msa0934970:intron 45.0%
! CTTTTTCTTCACACCAGGTG+GGG + chr6_3:5242547-5242566 None:intergenic 45.0%
!! GCTTTTTCTTCACACCAGGT+GGG + chr6_3:5242548-5242567 None:intergenic 45.0%
AACAATGACACCAACGACAC+GGG + chr6_3:5242925-5242944 None:intergenic 45.0%
CAACAATGACACCAACGACA+CGG + chr6_3:5242926-5242945 None:intergenic 45.0%
TTTCCAGCTGACAACTATGC+TGG - chr6_3:5242963-5242982 Msa0934970:five_prime_UTR 45.0%
TGACAACTATGCTGGATGTG+TGG - chr6_3:5242971-5242990 Msa0934970:five_prime_UTR 45.0%
!! GAAGATGATGGGAGTGATGA+TGG - chr6_3:5243020-5243039 Msa0934970:five_prime_UTR 45.0%
ACATAACCATGAAGAGGGAG+AGG - chr6_3:5243085-5243104 Msa0934970:five_prime_UTR 45.0%
CACAGAAAACACCCGGTTGA+AGG - chr6_3:5239932-5239951 Msa0934970:three_prime_UTR 50.0%
TCACCGGAAAACTCCATCTC+CGG - chr6_3:5239989-5240008 Msa0934970:three_prime_UTR 50.0%
TGAACTGAAGGGTTTACCGG+AGG + chr6_3:5240032-5240051 None:intergenic 50.0%
CGATTCCGGTGGTCTTTGAA+GGG + chr6_3:5240064-5240083 None:intergenic 50.0%
CCTTCAAAGACCACCGGAAT+CGG - chr6_3:5240062-5240081 Msa0934970:three_prime_UTR 50.0%
!! GTAAAAACCACCGATTCCGG+TGG + chr6_3:5240075-5240094 None:intergenic 50.0%
GTCCGTTAGAAACTCCAGCA+AGG - chr6_3:5240124-5240143 Msa0934970:three_prime_UTR 50.0%
GTTGTCCAAAGCAACCTTGC+TGG + chr6_3:5240141-5240160 None:intergenic 50.0%
TCAATGATGAGCATGGGGGA+AGG - chr6_3:5241060-5241079 Msa0934970:intron 50.0%
TGGAGAACCCAAATCCTCTC+TGG - chr6_3:5241629-5241648 Msa0934970:intron 50.0%
ACCCAGTTGGCCAAGAAACT+AGG - chr6_3:5241921-5241940 Msa0934970:intron 50.0%
ACTAGGATTGCAACCTAGGC+AGG - chr6_3:5241938-5241957 Msa0934970:intron 50.0%
TTCAGAACCGTAGGGCTAGA+TGG - chr6_3:5241973-5241992 Msa0934970:intron 50.0%
!! GGCTTTTTCTTCACACCAGG+TGG + chr6_3:5242549-5242568 None:intergenic 50.0%
GAAAGCTGATCCACTTCCAG+TGG - chr6_3:5242815-5242834 Msa0934970:intron 50.0%
TGAGCTATGTCCACTGGAAG+TGG + chr6_3:5242828-5242847 None:intergenic 50.0%
GTGGATGACCACATGAGTTC+TGG - chr6_3:5242864-5242883 Msa0934970:CDS 50.0%
CAACGCTTCCAGAACTCATG+TGG + chr6_3:5242875-5242894 None:intergenic 50.0%
!! CACATGAGTTCTGGAAGCGT+TGG - chr6_3:5242873-5242892 Msa0934970:CDS 50.0%
ACAATGACACCAACGACACG+GGG + chr6_3:5242924-5242943 None:intergenic 50.0%
CATCCAGCATAGTTGTCAGC+TGG + chr6_3:5242969-5242988 None:intergenic 50.0%
!! ATGATGGGAGTGATGATGGG+AGG - chr6_3:5243024-5243043 Msa0934970:five_prime_UTR 50.0%
!! AAGAGGGAGAGGCACTGAAT+TGG - chr6_3:5243096-5243115 Msa0934970:five_prime_UTR 50.0%
GACGCCATTGCCCAAATTAC+TGG + chr6_3:5243253-5243272 None:intergenic 50.0%
AGAGAGAGGGAGCCTTCAAC+CGG + chr6_3:5239947-5239966 None:intergenic 55.0%
! GGAGATGGAGTTTTCCGGTG+AGG + chr6_3:5239990-5240009 None:intergenic 55.0%
! TGGCCGGAGATGGAGTTTTC+CGG + chr6_3:5239995-5240014 None:intergenic 55.0%
AAAACTCCATCTCCGGCCAC+CGG - chr6_3:5239996-5240015 Msa0934970:three_prime_UTR 55.0%
CTGAAGGGTTTACCGGAGGA+AGG + chr6_3:5240028-5240047 None:intergenic 55.0%
CCGATTCCGGTGGTCTTTGA+AGG + chr6_3:5240065-5240084 None:intergenic 55.0%
TCAAAGACCACCGGAATCGG+TGG - chr6_3:5240065-5240084 Msa0934970:three_prime_UTR 55.0%
TCAGGTTCGAACCCGAGTGA+AGG - chr6_3:5240614-5240633 Msa0934970:intron 55.0%
GCATGGGGGAAGGCTCAAAA+AGG - chr6_3:5241070-5241089 Msa0934970:intron 55.0%
AACCAACCTGCTCGGAAGTG+AGG + chr6_3:5241173-5241192 None:intergenic 55.0%
AGGCAAGCAACCAACCTGCT+CGG + chr6_3:5241181-5241200 None:intergenic 55.0%
! TACGGGTTTGGTTCCTCTCC+GGG + chr6_3:5241767-5241786 None:intergenic 55.0%
! CTACGGGTTTGGTTCCTCTC+CGG + chr6_3:5241768-5241787 None:intergenic 55.0%
GCCAGAGAGGAAAACCCAGT+TGG - chr6_3:5241908-5241927 Msa0934970:intron 55.0%
! GCCAACTGGGTTTTCCTCTC+TGG + chr6_3:5241912-5241931 None:intergenic 55.0%
AGGATTGCAACCTAGGCAGG+TGG - chr6_3:5241941-5241960 Msa0934970:intron 55.0%
AACCTAGGCAGGTGGCTGTA+TGG - chr6_3:5241949-5241968 Msa0934970:intron 55.0%
AACCATACAGCCACCTGCCT+AGG + chr6_3:5241954-5241973 None:intergenic 55.0%
! CATCTGTTCTGAACCCCACC+TGG - chr6_3:5242531-5242550 Msa0934970:intron 55.0%
!! TGGAAGCGTTGGAAGTGCAG+TGG - chr6_3:5242884-5242903 Msa0934970:CDS 55.0%
!! AAGCGTTGGAAGTGCAGTGG+TGG - chr6_3:5242887-5242906 Msa0934970:CDS 55.0%
CAATGACACCAACGACACGG+GGG + chr6_3:5242923-5242942 None:intergenic 55.0%
TCAGTGCCTCTCCCTCTTCA+TGG + chr6_3:5243094-5243113 None:intergenic 55.0%
!! AGGGAGAGGCACTGAATTGG+TGG - chr6_3:5243099-5243118 Msa0934970:five_prime_UTR 55.0%
!! GGGAGAGGCACTGAATTGGT+GGG - chr6_3:5243100-5243119 Msa0934970:five_prime_UTR 55.0%
!! GGAGAGGCACTGAATTGGTG+GGG - chr6_3:5243101-5243120 Msa0934970:five_prime_UTR 55.0%
GAGAGAGGGAGCCTTCAACC+GGG + chr6_3:5239946-5239965 None:intergenic 60.0%
GTGTGTGCGTGCGAGAGAGA+GGG + chr6_3:5239960-5239979 None:intergenic 60.0%
TACCGGAGGAAGGAGAACGC+CGG + chr6_3:5240018-5240037 None:intergenic 60.0%
CAACCTGCTCGGAAGTGAGG+CGG + chr6_3:5241170-5241189 None:intergenic 60.0%
! ACGGGTTTGGTTCCTCTCCG+GGG + chr6_3:5241766-5241785 None:intergenic 60.0%
! TTTGGGTGCTTTGGGCGCCT+AGG - chr6_3:5243186-5243205 Msa0934970:five_prime_UTR 60.0%
GGTGTGTGCGTGCGAGAGAG+AGG + chr6_3:5239961-5239980 None:intergenic 65.0%
CACCGGCGTTCTCCTTCCTC+CGG - chr6_3:5240013-5240032 Msa0934970:three_prime_UTR 65.0%
GTGAGGCGGCGCTTCTTCTC+CGG + chr6_3:5241156-5241175 None:intergenic 65.0%
CGCCTCACTTCCGAGCAGGT+TGG - chr6_3:5241168-5241187 Msa0934970:intron 65.0%
GAGAGTAGCCCCCGTGTCGT+TGG - chr6_3:5242912-5242931 Msa0934970:CDS 65.0%
AGAACGCCGGTGGCCGGAGA+TGG + chr6_3:5240005-5240024 None:intergenic 70.0%
GGAAGGAGAACGCCGGTGGC+CGG + chr6_3:5240011-5240030 None:intergenic 70.0%
CGGAGGAAGGAGAACGCCGG+TGG + chr6_3:5240015-5240034 None:intergenic 70.0%
GCGCCGCCTCACTTCCGAGC+AGG - chr6_3:5241164-5241183 Msa0934970:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 5239931 5243385 5239931 ID=Msa0934970;Name=Msa0934970
chr6_3 mRNA 5239931 5243385 5239931 ID=Msa0934970-mRNA-1;Parent=Msa0934970;Name=Msa0934970-mRNA-1;_AED=0.04;_eAED=0.04;_QI=434|0.5|0.8|0.8|1|1|5|240|308
chr6_3 exon 5239931 5240569 5239931 ID=Msa0934970-mRNA-1:exon:1622;Parent=Msa0934970-mRNA-1
chr6_3 exon 5240838 5240900 5240838 ID=Msa0934970-mRNA-1:exon:1621;Parent=Msa0934970-mRNA-1
chr6_3 exon 5241213 5241452 5241213 ID=Msa0934970-mRNA-1:exon:1620;Parent=Msa0934970-mRNA-1
chr6_3 exon 5242131 5242261 5242131 ID=Msa0934970-mRNA-1:exon:1619;Parent=Msa0934970-mRNA-1
chr6_3 exon 5242858 5243385 5242858 ID=Msa0934970-mRNA-1:exon:1618;Parent=Msa0934970-mRNA-1
chr6_3 five_prime_UTR 5242952 5243385 5242952 ID=Msa0934970-mRNA-1:five_prime_utr;Parent=Msa0934970-mRNA-1
chr6_3 CDS 5242858 5242951 5242858 ID=Msa0934970-mRNA-1:cds;Parent=Msa0934970-mRNA-1
chr6_3 CDS 5242131 5242261 5242131 ID=Msa0934970-mRNA-1:cds;Parent=Msa0934970-mRNA-1
chr6_3 CDS 5241213 5241452 5241213 ID=Msa0934970-mRNA-1:cds;Parent=Msa0934970-mRNA-1
chr6_3 CDS 5240838 5240900 5240838 ID=Msa0934970-mRNA-1:cds;Parent=Msa0934970-mRNA-1
chr6_3 CDS 5240171 5240569 5240171 ID=Msa0934970-mRNA-1:cds;Parent=Msa0934970-mRNA-1
chr6_3 three_prime_UTR 5239931 5240170 5239931 ID=Msa0934970-mRNA-1:three_prime_utr;Parent=Msa0934970-mRNA-1
Gene Sequence

>Msa0934970

ATGGAGTCTGGTCGTCTTTACTTTGATTCTCCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGTGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAAGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGAACTCCATCATAAGAAGCAAATTTCCACTTACCAAAGAAGGTGATTGGGAGCTATCAAAGGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTTAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA
Protein sequence

>Msa0934970

MESGRLYFDSPACRGNNMNMLFLGNADLGFRGRSMMSMGEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSENSIIRSKFPLTKEGDWELSKEVVSLNEKLQVQAKDMLEEPLLEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA*