Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483900 | XP_003621006.1 | 92.335 | 1109 | 49 | 1 | 1 | 1109 | 1 | 1073 | 0.0 | 2046 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483900 | sp|C6L7U1|LIN1_LOTJA | 28.242 | 347 | 239 | 8 | 686 | 1030 | 805 | 1143 | 4.23e-24 | 114 |
| Msa0483900 | sp|C6L7U1|LIN1_LOTJA | 48.101 | 79 | 41 | 0 | 596 | 674 | 512 | 590 | 2.58e-18 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483900 | A2Q2S4 | 92.335 | 1109 | 49 | 1 | 1 | 1109 | 1 | 1073 | 0.0 | 2046 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0483900 | Msa1003790 | 0.918405 | 1.622637e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483900 | MtrunA17_Chr7g0214471 | 92.335 | 1109 | 49 | 1 | 1 | 1109 | 1 | 1073 | 0.0 | 2046 |
| Msa0483900 | MtrunA17_Chr4g0043451 | 42.222 | 225 | 120 | 6 | 195 | 410 | 98 | 321 | 6.27e-43 | 160 |
| Msa0483900 | MtrunA17_Chr2g0291731 | 31.124 | 347 | 231 | 4 | 692 | 1035 | 566 | 907 | 2.07e-34 | 142 |
| Msa0483900 | MtrunA17_Chr2g0291731 | 34.672 | 274 | 131 | 9 | 165 | 422 | 41 | 282 | 1.72e-31 | 133 |
| Msa0483900 | MtrunA17_Chr1g0196911 | 28.321 | 399 | 253 | 13 | 637 | 1030 | 769 | 1139 | 8.92e-24 | 108 |
| Msa0483900 | MtrunA17_Chr1g0196911 | 36.667 | 120 | 76 | 0 | 596 | 715 | 507 | 626 | 1.42e-20 | 98.6 |
| Msa0483900 | MtrunA17_Chr1g0196911 | 24.710 | 259 | 157 | 5 | 200 | 422 | 8 | 264 | 2.03e-13 | 75.5 |
| Msa0483900 | MtrunA17_Chr8g0390311 | 50.633 | 79 | 39 | 0 | 585 | 663 | 385 | 463 | 1.35e-19 | 95.5 |
| Msa0483900 | MtrunA17_Chr8g0390311 | 25.872 | 344 | 241 | 7 | 692 | 1030 | 658 | 992 | 4.38e-15 | 80.9 |
| Msa0483900 | MtrunA17_Chr7g0275961 | 30.952 | 168 | 106 | 4 | 593 | 759 | 252 | 410 | 2.12e-15 | 81.6 |
| Msa0483900 | MtrunA17_Chr7g0237931 | 44.000 | 75 | 39 | 2 | 589 | 662 | 231 | 303 | 9.78e-14 | 75.5 |
| Msa0483900 | MtrunA17_Chr5g0413681 | 29.371 | 143 | 75 | 4 | 598 | 739 | 283 | 400 | 1.80e-13 | 75.1 |
| Msa0483900 | MtrunA17_Chr7g0248251 | 43.373 | 83 | 43 | 2 | 580 | 662 | 262 | 340 | 1.39e-12 | 72.0 |
| Msa0483900 | MtrunA17_Chr4g0031431 | 39.437 | 71 | 42 | 1 | 592 | 662 | 252 | 321 | 5.10e-12 | 70.1 |
| Msa0483900 | MtrunA17_Chr1g0199321 | 43.056 | 72 | 38 | 2 | 592 | 662 | 244 | 313 | 1.25e-11 | 68.9 |
| Msa0483900 | MtrunA17_Chr4g0044631 | 43.478 | 69 | 36 | 2 | 595 | 662 | 14 | 80 | 1.81e-11 | 67.8 |
| Msa0483900 | MtrunA17_Chr5g0434171 | 41.429 | 70 | 38 | 2 | 594 | 662 | 34 | 101 | 2.40e-11 | 67.4 |
| Msa0483900 | MtrunA17_Chr7g0234671 | 40.580 | 69 | 40 | 1 | 594 | 662 | 77 | 144 | 3.46e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483900 | AT5G09800.1 | 36.190 | 105 | 57 | 4 | 588 | 691 | 4 | 99 | 1.82e-11 | 68.2 |
| Msa0483900 | AT5G42340.1 | 31.783 | 129 | 81 | 3 | 583 | 711 | 278 | 399 | 2.37e-11 | 68.6 |
| Msa0483900 | AT1G49780.1 | 43.478 | 69 | 36 | 2 | 595 | 662 | 14 | 80 | 2.95e-11 | 67.4 |
| Msa0483900 | AT1G76390.1 | 40.000 | 85 | 45 | 2 | 599 | 678 | 29 | 112 | 3.09e-11 | 68.2 |
| Msa0483900 | AT1G76390.2 | 40.000 | 85 | 45 | 2 | 599 | 678 | 29 | 112 | 3.09e-11 | 68.2 |
| Msa0483900 | AT1G23030.1 | 30.709 | 127 | 79 | 3 | 594 | 719 | 240 | 358 | 3.37e-11 | 67.8 |
| Msa0483900 | AT1G68940.3 | 25.540 | 278 | 149 | 12 | 564 | 803 | 212 | 469 | 3.81e-11 | 68.2 |
| Msa0483900 | AT1G68940.2 | 25.806 | 279 | 147 | 12 | 564 | 803 | 265 | 522 | 4.45e-11 | 67.8 |
| Msa0483900 | AT1G68940.1 | 37.168 | 113 | 50 | 6 | 564 | 663 | 265 | 369 | 4.48e-11 | 67.8 |
| Msa0483900 | AT3G07360.1 | 35.165 | 91 | 55 | 2 | 572 | 662 | 54 | 140 | 9.21e-11 | 66.2 |
Find 155 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCATTATACACTTTC+TGG | 0.079952 | 3_4:+724686 | None:intergenic |
| AGAGTAGTGGTTATCTTATT+TGG | 0.178456 | 3_4:+723686 | None:intergenic |
| ATGGACTAGTTGATGTATTA+TGG | 0.202999 | 3_4:-720913 | Msa0483900:CDS |
| GCTAAGCATATAATCTCTTT+AGG | 0.228808 | 3_4:-723188 | Msa0483900:CDS |
| AGTATAAATGGCTTCATCTT+TGG | 0.231855 | 3_4:-725844 | None:intergenic |
| TCTAAAGTATTTCCTGTTAC+TGG | 0.241225 | 3_4:+723416 | None:intergenic |
| TCAAAGATATTTCTTGTTAG+AGG | 0.257806 | 3_4:+723521 | None:intergenic |
| ACTGTTTAAATTAGTTTCTA+TGG | 0.282515 | 3_4:+723769 | None:intergenic |
| CTAAGCATATAATCTCTTTA+GGG | 0.289542 | 3_4:-723187 | Msa0483900:CDS |
| AAGTGATCCTCTTCACTCTT+TGG | 0.296475 | 3_4:-725739 | Msa0483900:CDS |
| TTCAACTTCAGTAAAATATC+AGG | 0.299538 | 3_4:-721446 | Msa0483900:CDS |
| ATGCAGCTTAGTATTATTAC+TGG | 0.308391 | 3_4:-725009 | Msa0483900:CDS |
| ACCGAAAATCTTCATCCTTT+AGG | 0.313395 | 3_4:+725196 | None:intergenic |
| TTGCTTTATATTACAAAGAT+TGG | 0.314400 | 3_4:-724642 | Msa0483900:CDS |
| TATAATGAAAGTTTGGATTC+AGG | 0.314769 | 3_4:-724676 | Msa0483900:CDS |
| GAGGTTTGAACAAGGAAATT+TGG | 0.318367 | 3_4:-723144 | Msa0483900:CDS |
| AATATTGTTGCCTGAGCTTT+GGG | 0.324455 | 3_4:-724815 | Msa0483900:CDS |
| GATATTGCTCCCCTTCTTCA+TGG | 0.330057 | 3_4:-720932 | Msa0483900:CDS |
| AAAGGTTTGACCTGACTCTA+AGG | 0.336122 | 3_4:+723487 | None:intergenic |
| GAAAGTGTATAATGAAAGTT+TGG | 0.337823 | 3_4:-724683 | Msa0483900:CDS |
| CAATATTGTTGCCTGAGCTT+TGG | 0.341650 | 3_4:-724816 | Msa0483900:CDS |
| CAGATTCTCCCTATACAAAA+TGG | 0.348155 | 3_4:+720871 | None:intergenic |
| AATTGTGAGAGAGGTTCTTA+TGG | 0.355397 | 3_4:-724197 | Msa0483900:CDS |
| AACTTTCCGATTTGAAGAAA+TGG | 0.358300 | 3_4:-724774 | Msa0483900:CDS |
| ATTCTGAATGGATACATAGA+AGG | 0.362268 | 3_4:-725222 | Msa0483900:CDS |
| GGAAGATGAAGAAGAAGAAA+TGG | 0.363565 | 3_4:-721735 | Msa0483900:CDS |
| TTCAAGATAAGGTTGCTAAA+TGG | 0.373088 | 3_4:+723380 | None:intergenic |
| CAAAGAAAAGAAGGAACAAT+TGG | 0.374214 | 3_4:-725454 | Msa0483900:CDS |
| CGATCAAACGCTTCAAGATA+AGG | 0.376909 | 3_4:+723369 | None:intergenic |
| AAGATAACCACTACTCTTGA+TGG | 0.379583 | 3_4:-723680 | Msa0483900:intron |
| CTTATTACACTTTGAACTAC+TGG | 0.379975 | 3_4:-722441 | Msa0483900:intron |
| GTTACACCATTTCTTCAAAT+CGG | 0.401323 | 3_4:+724768 | None:intergenic |
| TGAAGCGTTTGATCGATAAC+TGG | 0.401553 | 3_4:-723361 | Msa0483900:CDS |
| CTTCAGTAAAATATCAGGTT+TGG | 0.408794 | 3_4:-721441 | Msa0483900:CDS |
| AACAGAACATGTCCAGTAAC+AGG | 0.413541 | 3_4:-723428 | Msa0483900:CDS |
| GGGTTCTTTCGTTTCTCTGT+AGG | 0.417240 | 3_4:-723166 | Msa0483900:CDS |
| ATTTCAATGGAAGGAATAGT+TGG | 0.417441 | 3_4:+724598 | None:intergenic |
| CTGCAGAAGAATGGAAAGAT+AGG | 0.418024 | 3_4:-723823 | Msa0483900:CDS |
| AATTCATCAGATAGTGATAG+TGG | 0.427587 | 3_4:-725522 | Msa0483900:CDS |
| AATTCATGAACTGGTACTCT+TGG | 0.428025 | 3_4:+724095 | None:intergenic |
| CATCAAGGCATGGTTTCAAA+AGG | 0.431872 | 3_4:-723453 | Msa0483900:CDS |
| TCTTGAGCTTCTTCACAGTA+AGG | 0.432710 | 3_4:-723024 | Msa0483900:CDS |
| AAAGAAAAGAAGGAACAATT+GGG | 0.435116 | 3_4:-725453 | Msa0483900:CDS |
| AAGAGAACTTACCGATGAAA+TGG | 0.438605 | 3_4:+721871 | None:intergenic |
| AGAAATGGATGAAGAGTTCA+TGG | 0.439803 | 3_4:-721720 | Msa0483900:CDS |
| GATGTCACTTGTTTCATAAG+TGG | 0.443353 | 3_4:-722557 | Msa0483900:CDS |
| AACCTTGTCATCATTTAAGC+TGG | 0.455375 | 3_4:+722057 | None:intergenic |
| TCTAACAAGAAATATCTTTG+AGG | 0.458719 | 3_4:-723519 | Msa0483900:CDS |
| CAAGGACAGCTGCAGAAGAA+TGG | 0.461431 | 3_4:-723832 | Msa0483900:CDS |
| ATAACCTGCTTGCTTTAAGA+TGG | 0.462403 | 3_4:+721958 | None:intergenic |
| CTTTCTAAACAGTATAATGC+TGG | 0.465237 | 3_4:-721566 | Msa0483900:CDS |
| AACTTGTTAGAATCAATGAT+TGG | 0.465459 | 3_4:-721695 | Msa0483900:CDS |
| AATGGAAACTAGTGCTTTCA+CGG | 0.469991 | 3_4:+725242 | None:intergenic |
| CACTTGTTTCATAAGTGGCT+TGG | 0.471150 | 3_4:-722552 | Msa0483900:CDS |
| AATATTGTCCGCGCCTGAAA+AGG | 0.474016 | 3_4:+724832 | None:intergenic |
| GGATAATGATGGAATTTCAA+TGG | 0.474085 | 3_4:+724585 | None:intergenic |
| GCACTAGTTTCCATTCTGAA+TGG | 0.474787 | 3_4:-725234 | Msa0483900:CDS |
| ACCGTTGATCCTCTTCATCA+AGG | 0.476455 | 3_4:+721903 | None:intergenic |
| TAATACCTGTCGACTCGTAA+TGG | 0.478741 | 3_4:+724564 | None:intergenic |
| CTTGTTTAATAACTGTTACA+TGG | 0.480104 | 3_4:-721601 | Msa0483900:CDS |
| ATAAATTCCAGTGGTATGCT+TGG | 0.480143 | 3_4:+723548 | None:intergenic |
| CATCAACTAGTCCATGAAGA+AGG | 0.482713 | 3_4:+720921 | None:intergenic |
| AGTTCAACTTCGTAGAATTG+AGG | 0.484002 | 3_4:+724245 | None:intergenic |
| CAAGTGTCTAATGTGAAAAG+AGG | 0.484843 | 3_4:-725477 | Msa0483900:CDS |
| ATCTCCTAGCCTTGATGAAG+AGG | 0.488093 | 3_4:-721912 | Msa0483900:CDS |
| CTGAGAGATGATAGCTAAGA+AGG | 0.488827 | 3_4:+721529 | None:intergenic |
| ACCATTGCCTGTGGTGAGAA+TGG | 0.489720 | 3_4:+724305 | None:intergenic |
| TTTGAATTTCATTCAACTTG+AGG | 0.494489 | 3_4:-725145 | Msa0483900:CDS |
| GCTCAAGTTCTTCATTCTCA+AGG | 0.497709 | 3_4:+721495 | None:intergenic |
| TTTATCTTCCTTGAAAGAAG+AGG | 0.499919 | 3_4:-723225 | Msa0483900:CDS |
| AGCATATATGAATCCTTCAA+TGG | 0.500188 | 3_4:+725423 | None:intergenic |
| TCAAGATCTTCTTTCCATCA+TGG | 0.500865 | 3_4:-725768 | Msa0483900:CDS |
| TTGTTTCATAAGTGGCTTGG+TGG | 0.501437 | 3_4:-722549 | Msa0483900:CDS |
| GTAGTTCAAAGTGTAATAAG+AGG | 0.504871 | 3_4:+722444 | None:intergenic |
| AGAATCTAAACATCTAGATA+TGG | 0.504905 | 3_4:+721646 | None:intergenic |
| GGTATATAGAATTCATGAAC+TGG | 0.505922 | 3_4:+724086 | None:intergenic |
| CTTTGAAAGAAAAGCCATCA+AGG | 0.514152 | 3_4:-723468 | Msa0483900:CDS |
| GAACCAGTCACCTTAGAGTC+AGG | 0.515046 | 3_4:-723497 | Msa0483900:CDS |
| TTCTTTCGTTTCTCTGTAGG+AGG | 0.515913 | 3_4:-723163 | Msa0483900:CDS |
| GAAAAGAGGCAAAGAAAAGA+AGG | 0.518665 | 3_4:-725463 | Msa0483900:CDS |
| TTCTATGTATCCATTCAGAA+TGG | 0.519813 | 3_4:+725224 | None:intergenic |
| TGACCTGACTCTAAGGTGAC+TGG | 0.520938 | 3_4:+723494 | None:intergenic |
| TAATGACAGGGAAGTTCACT+TGG | 0.526782 | 3_4:-724359 | Msa0483900:intron |
| TTATCACAAATAAACGGTGA+TGG | 0.533604 | 3_4:+721416 | None:intergenic |
| GTTAAATGTAACCATTTCAT+CGG | 0.537976 | 3_4:-721882 | Msa0483900:intron |
| ATCAACTAGTCCATGAAGAA+GGG | 0.539153 | 3_4:+720922 | None:intergenic |
| GAGCAGCTTCTTGCAGAGGA+AGG | 0.539321 | 3_4:-725822 | Msa0483900:CDS |
| TCATTGACAAAAGTTCAGTA+AGG | 0.539896 | 3_4:+722970 | None:intergenic |
| AGCAGCTTCTTGCAGAGGAA+GGG | 0.540666 | 3_4:-725821 | Msa0483900:CDS |
| AGCTTTGAAAATTGTGAGAG+AGG | 0.541901 | 3_4:-724206 | Msa0483900:CDS |
| CTCTGTAGGAGGTTTGAACA+AGG | 0.545055 | 3_4:-723152 | Msa0483900:CDS |
| GAGATGATAGCTAAGAAGGC+AGG | 0.545629 | 3_4:+721533 | None:intergenic |
| AATAGACGCTCCCAAAGCTC+AGG | 0.545942 | 3_4:+724805 | None:intergenic |
| ATATTCTCCAAGCATACCAC+TGG | 0.546873 | 3_4:-723555 | Msa0483900:CDS |
| CGACTCGTAATGGATAATGA+TGG | 0.548637 | 3_4:+724574 | None:intergenic |
| AATGATGGAATTTCAATGGA+AGG | 0.548712 | 3_4:+724589 | None:intergenic |
| GGCATCAAGTGCCTCTGCAA+TGG | 0.549842 | 3_4:+722078 | None:intergenic |
| TAATAAGAGGACAGCGATGA+GGG | 0.550715 | 3_4:+722457 | None:intergenic |
| CTCAAGACTTGTAATCACCT+TGG | 0.550915 | 3_4:+725104 | None:intergenic |
| ACCATTCTCACCACAGGCAA+TGG | 0.555072 | 3_4:-724306 | Msa0483900:CDS |
| CTAGACATGTAGATTTGATG+AGG | 0.555129 | 3_4:-721625 | Msa0483900:CDS |
| GTTGCATATATAAGATAGCA+AGG | 0.557196 | 3_4:-723067 | Msa0483900:CDS |
| ATCAAGGCATGGTTTCAAAA+GGG | 0.559344 | 3_4:-723452 | Msa0483900:CDS |
| TTAGAATCAATGATTGGTGA+TGG | 0.561943 | 3_4:-721689 | Msa0483900:CDS |
| TGTTTCATAAGTGGCTTGGT+GGG | 0.563564 | 3_4:-722548 | Msa0483900:CDS |
| ACTACCATCTTAAAGCAAGC+AGG | 0.563960 | 3_4:-721962 | Msa0483900:CDS |
| ATTATCCATTACGAGTCGAC+AGG | 0.568253 | 3_4:-724569 | Msa0483900:intron |
| TTCTTGCTGACCATTGCCTG+TGG | 0.569635 | 3_4:+724296 | None:intergenic |
| AAAGAAAAGCCATCAAGGCA+TGG | 0.569716 | 3_4:-723463 | Msa0483900:CDS |
| ATTATACTGTTTAGAAAGTG+AGG | 0.571728 | 3_4:+721571 | None:intergenic |
| TTTCTTACCATCAAGAGTAG+TGG | 0.572397 | 3_4:+723673 | None:intergenic |
| GCCTTGATGAAGAGGATCAA+CGG | 0.572641 | 3_4:-721904 | Msa0483900:CDS |
| CTACGAAGTTGAACTTGATG+AGG | 0.574721 | 3_4:-724237 | Msa0483900:CDS |
| TAGACATGTAGATTTGATGA+GGG | 0.575230 | 3_4:-721624 | Msa0483900:CDS |
| ATTATTTGTTATCATTCCAG+TGG | 0.576441 | 3_4:+721985 | None:intergenic |
| TTGCATATATAAGATAGCAA+GGG | 0.577003 | 3_4:-723066 | Msa0483900:CDS |
| TGATCCTCTTCATCAAGGCT+AGG | 0.580353 | 3_4:+721908 | None:intergenic |
| TACAAAGATTGGCTCAGTGA+AGG | 0.585870 | 3_4:-724631 | Msa0483900:CDS |
| GCTATCATCTCTCAGCTGAA+AGG | 0.587912 | 3_4:-721521 | Msa0483900:CDS |
| CTATCTTCCAAAGAGTGAAG+AGG | 0.591307 | 3_4:+725732 | None:intergenic |
| ATTGCTAATCTGATATCTTG+AGG | 0.599893 | 3_4:+725653 | None:intergenic |
| TTTGGAGCAGCTTCTTGCAG+AGG | 0.601323 | 3_4:-725826 | Msa0483900:CDS |
| GATCACTTGAATTACCATGA+TGG | 0.601325 | 3_4:+725754 | None:intergenic |
| ATATGCAACTAGAATCTGAT+CGG | 0.602029 | 3_4:+723081 | None:intergenic |
| ATACATAGAAGGTTTCCTAA+AGG | 0.605198 | 3_4:-725211 | Msa0483900:CDS |
| CAACGAACCATTCTCACCAC+AGG | 0.605684 | 3_4:-724312 | Msa0483900:CDS |
| AGAACACAATTCTGAGACCA+AGG | 0.607133 | 3_4:-725121 | Msa0483900:CDS |
| TATATGCTTAGACAATTGAG+TGG | 0.608616 | 3_4:-725408 | Msa0483900:CDS |
| AAGCAAGCAGGTTATAACAA+TGG | 0.617066 | 3_4:-721950 | Msa0483900:CDS |
| AAATGGTGTAACAACAAGGA+AGG | 0.617237 | 3_4:-724757 | Msa0483900:CDS |
| GAGAGGTTCTTATGGTTCAA+CGG | 0.617845 | 3_4:-724189 | Msa0483900:CDS |
| TCAAACGGTGGAAAATTCGA+AGG | 0.619070 | 3_4:-723300 | Msa0483900:CDS |
| TGCCAGCTTAAATGATGACA+AGG | 0.619717 | 3_4:-722059 | Msa0483900:CDS |
| GTTTAGCATATACATAGAGA+TGG | 0.619765 | 3_4:-722110 | Msa0483900:CDS |
| CAAGCAGCAGAAAAGTGCAA+AGG | 0.625671 | 3_4:-725791 | Msa0483900:CDS |
| TGCATATATAAGATAGCAAG+GGG | 0.634241 | 3_4:-723065 | Msa0483900:CDS |
| TTTGAGAGGCAAAATCAAGA+AGG | 0.635942 | 3_4:+723318 | None:intergenic |
| TAAGCATATAATCTCTTTAG+GGG | 0.637602 | 3_4:-723186 | Msa0483900:CDS |
| GACACATATAATGAGACGGA+GGG | 0.637757 | 3_4:+721346 | None:intergenic |
| TCAACTAGTCCATGAAGAAG+GGG | 0.638307 | 3_4:+720923 | None:intergenic |
| GAAACAAGTTAAATAACGAA+CGG | 0.643223 | 3_4:-725581 | Msa0483900:CDS |
| GTCAGCGGAAAGGAACATCA+AGG | 0.646932 | 3_4:-723850 | Msa0483900:intron |
| AAATGACACATATAATGAGA+CGG | 0.651445 | 3_4:+721342 | None:intergenic |
| CTGTGGTGAGAATGGTTCGT+TGG | 0.657069 | 3_4:+724313 | None:intergenic |
| GAAGAAATGGTGTAACAACA+AGG | 0.657881 | 3_4:-724761 | Msa0483900:CDS |
| AAGTTGAATGAAATTCAAAG+AGG | 0.660155 | 3_4:+725149 | None:intergenic |
| GTAATAAGAGGACAGCGATG+AGG | 0.664032 | 3_4:+722456 | None:intergenic |
| TCAAAGAGGAGAAACAATTG+TGG | 0.665172 | 3_4:+725163 | None:intergenic |
| GGCTGTGAATGCCATTGCAG+AGG | 0.666777 | 3_4:-722089 | Msa0483900:CDS |
| AAGAAAAGAAGGAACAATTG+GGG | 0.676981 | 3_4:-725452 | Msa0483900:CDS |
| AGAAAAGAAGGAACAATTGG+GGG | 0.678559 | 3_4:-725451 | Msa0483900:CDS |
| AATAAGAGGACAGCGATGAG+GGG | 0.685162 | 3_4:+722458 | None:intergenic |
| AGAGGACAAATAAATTCCAG+TGG | 0.687209 | 3_4:+723539 | None:intergenic |
| TGACACATATAATGAGACGG+AGG | 0.700368 | 3_4:+721345 | None:intergenic |
| GGATCAAATATACAACACTG+AGG | 0.761941 | 3_4:+724908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAAAAAAATATACAAA+AGG | + | chr3_4:722662-722681 | None:intergenic | 10.0% |
| !! | ACTAAAATATTCAAATTAAT+TGG | - | chr3_4:725454-725473 | Msa0483900:CDS | 10.0% |
| !!! | AGTGATAATAATGTTTTTAT+AGG | - | chr3_4:721102-721121 | Msa0483900:intron | 15.0% |
| !! | ACTATAAATAATTATACTGT+AGG | + | chr3_4:722712-722731 | None:intergenic | 15.0% |
| !!! | TTCTTTGTTTTTGTTTTTAA+TGG | - | chr3_4:724856-724875 | Msa0483900:CDS | 15.0% |
| !!! | AGATTTTTATCACAAATAAA+CGG | + | chr3_4:725298-725317 | None:intergenic | 15.0% |
| !! | TTGCTTTATATTACAAAGAT+TGG | - | chr3_4:722063-722082 | Msa0483900:CDS | 20.0% |
| !!! | TTATCTTCATCATTTTCATA+TGG | + | chr3_4:722273-722292 | None:intergenic | 20.0% |
| !!! | ACTGTTTAAATTAGTTTCTA+TGG | + | chr3_4:722939-722958 | None:intergenic | 20.0% |
| !! | TGGTAAGAAAAATAATATGT+TGG | - | chr3_4:723045-723064 | Msa0483900:CDS | 20.0% |
| !!! | TGCATTTTACATAAACATTT+TGG | - | chr3_4:723118-723137 | Msa0483900:CDS | 20.0% |
| !!! | GTGAGATTTTTATCAAATTT+TGG | - | chr3_4:723762-723781 | Msa0483900:CDS | 20.0% |
| !! | TCTTTCGAAATATTATTTAC+TGG | - | chr3_4:724102-724121 | Msa0483900:CDS | 20.0% |
| !!! | CTATTTATTTTGTAGAAGAA+AGG | - | chr3_4:724126-724145 | Msa0483900:CDS | 20.0% |
| !! | ATTGAATTTCATTCATTGTT+TGG | + | chr3_4:724512-724531 | None:intergenic | 20.0% |
| !! | TCATTTAGTTAAAAAATGAC+AGG | - | chr3_4:724949-724968 | Msa0483900:CDS | 20.0% |
| !! | GATAAAAATCTTGCTAATTT+CGG | - | chr3_4:725307-725326 | Msa0483900:CDS | 20.0% |
| !! | AATATTCAAATTAATTGGAG+TGG | - | chr3_4:725459-725478 | Msa0483900:CDS | 20.0% |
| !! | ATCGTAAAAAAGTTAATAAG+TGG | - | chr3_4:725541-725560 | Msa0483900:CDS | 20.0% |
| !! | TCATATCTATAAACTAGTAT+CGG | + | chr3_4:725654-725673 | None:intergenic | 20.0% |
| ! | GAAACAAGTTAAATAACGAA+CGG | - | chr3_4:721124-721143 | Msa0483900:intron | 25.0% |
| ! | AAAGAAAAGAAGGAACAATT+GGG | - | chr3_4:721252-721271 | Msa0483900:intron | 25.0% |
| ! | AAGTTGAATGAAATTCAAAG+AGG | + | chr3_4:721559-721578 | None:intergenic | 25.0% |
| ! | TTTGAATTTCATTCAACTTG+AGG | - | chr3_4:721560-721579 | Msa0483900:CDS | 25.0% |
| ! | CCAAAGAAAAAAGAAAGTTT+CGG | - | chr3_4:721818-721837 | Msa0483900:intron | 25.0% |
| ! | AACTTTCATTATACACTTTC+TGG | + | chr3_4:722022-722041 | None:intergenic | 25.0% |
| !! | GAAAGTGTATAATGAAAGTT+TGG | - | chr3_4:722022-722041 | Msa0483900:CDS | 25.0% |
| ! | TATAATGAAAGTTTGGATTC+AGG | - | chr3_4:722029-722048 | Msa0483900:CDS | 25.0% |
| ! | TTGATCGATAATGAATACAA+AGG | - | chr3_4:722228-722247 | Msa0483900:intron | 25.0% |
| ! | TTAGAATTAAAGTCGGTTAA+TGG | + | chr3_4:722329-722348 | None:intergenic | 25.0% |
| !! | TATGGAGAAATATTTTCTAG+TGG | + | chr3_4:722921-722940 | None:intergenic | 25.0% |
| !!! | ATTTCATTTGCTTTTTCATG+AGG | + | chr3_4:722980-722999 | None:intergenic | 25.0% |
| !!! | AAAATCCATTTGTTATCTGA+AGG | + | chr3_4:723083-723102 | None:intergenic | 25.0% |
| !!! | TTACATAAACATTTTGGTGT+AGG | - | chr3_4:723124-723143 | Msa0483900:CDS | 25.0% |
| ! | TCAAAGATATTTCTTGTTAG+AGG | + | chr3_4:723187-723206 | None:intergenic | 25.0% |
| ! | TCTAACAAGAAATATCTTTG+AGG | - | chr3_4:723186-723205 | Msa0483900:CDS | 25.0% |
| ! | CTAAGCATATAATCTCTTTA+GGG | - | chr3_4:723518-723537 | Msa0483900:CDS | 25.0% |
| ! | TAAGCATATAATCTCTTTAG+GGG | - | chr3_4:723519-723538 | Msa0483900:CDS | 25.0% |
| ! | TTGCATATATAAGATAGCAA+GGG | - | chr3_4:723639-723658 | Msa0483900:intron | 25.0% |
| !!! | ATAGTGTTGCATTTTTTGTT+GGG | + | chr3_4:723714-723733 | None:intergenic | 25.0% |
| !!! | AATAGTGTTGCATTTTTTGT+TGG | + | chr3_4:723715-723734 | None:intergenic | 25.0% |
| ! | CAAATAGAGGTTATAAATAG+CGG | - | chr3_4:723903-723922 | Msa0483900:intron | 25.0% |
| ! | GTTATAAATAGCGGTTATAA+CGG | - | chr3_4:723912-723931 | Msa0483900:intron | 25.0% |
| ! | CAGAATAGTGTTATCAATTA+CGG | + | chr3_4:724070-724089 | None:intergenic | 25.0% |
| !!! | TTGAGGTTGTTTTTATAAGA+GGG | - | chr3_4:724363-724382 | Msa0483900:intron | 25.0% |
| ! | ATAGACTGTTCAATATTTAG+AGG | + | chr3_4:724405-724424 | None:intergenic | 25.0% |
| ! | ATATTTAAAGATCAAGTGAC+TGG | - | chr3_4:724428-724447 | Msa0483900:intron | 25.0% |
| ! | AAAGTCTCTTTAACATTGAA+GGG | + | chr3_4:724460-724479 | None:intergenic | 25.0% |
| !! | ATGTATATGCTAAACTTTTG+AGG | + | chr3_4:724590-724609 | None:intergenic | 25.0% |
| !!! | ATTATTTGTTATCATTCCAG+TGG | + | chr3_4:724723-724742 | None:intergenic | 25.0% |
| ! | GTTAAATGTAACCATTTCAT+CGG | - | chr3_4:724823-724842 | Msa0483900:CDS | 25.0% |
| !!! | AACTTGTTAGAATCAATGAT+TGG | - | chr3_4:725010-725029 | Msa0483900:CDS | 25.0% |
| ! | AGAATCTAAACATCTAGATA+TGG | + | chr3_4:725062-725081 | None:intergenic | 25.0% |
| ! | CTTGTTTAATAACTGTTACA+TGG | - | chr3_4:725104-725123 | Msa0483900:CDS | 25.0% |
| ! | ATTATACTGTTTAGAAAGTG+AGG | + | chr3_4:725137-725156 | None:intergenic | 25.0% |
| !! | TATTTTACTGAAGTTGAACA+AGG | + | chr3_4:725257-725276 | None:intergenic | 25.0% |
| ! | TTCAACTTCAGTAAAATATC+AGG | - | chr3_4:725259-725278 | Msa0483900:CDS | 25.0% |
| ! | AAATGACACATATAATGAGA+CGG | + | chr3_4:725366-725385 | None:intergenic | 25.0% |
| !!! | CTCATTATATGTGTCATTTT+AGG | - | chr3_4:725367-725386 | Msa0483900:CDS | 25.0% |
| ! | GATATTCCAAAGTGAAAAAT+AGG | - | chr3_4:725570-725589 | Msa0483900:CDS | 25.0% |
| ATTGCTAATCTGATATCTTG+AGG | + | chr3_4:721055-721074 | None:intergenic | 30.0% | |
| AATTCATCAGATAGTGATAG+TGG | - | chr3_4:721183-721202 | Msa0483900:intron | 30.0% | |
| CAAAGAAAAGAAGGAACAAT+TGG | - | chr3_4:721251-721270 | Msa0483900:intron | 30.0% | |
| AAGAAAAGAAGGAACAATTG+GGG | - | chr3_4:721253-721272 | Msa0483900:intron | 30.0% | |
| AGCATATATGAATCCTTCAA+TGG | + | chr3_4:721285-721304 | None:intergenic | 30.0% | |
| TATATGCTTAGACAATTGAG+TGG | - | chr3_4:721297-721316 | Msa0483900:intron | 30.0% | |
| TTCTATGTATCCATTCAGAA+TGG | + | chr3_4:721484-721503 | None:intergenic | 30.0% | |
| ATTCTGAATGGATACATAGA+AGG | - | chr3_4:721483-721502 | Msa0483900:CDS | 30.0% | |
| ATACATAGAAGGTTTCCTAA+AGG | - | chr3_4:721494-721513 | Msa0483900:CDS | 30.0% | |
| ! | TCCTAAAGGATGAAGATTTT+CGG | - | chr3_4:721508-721527 | Msa0483900:CDS | 30.0% |
| ATGCAGCTTAGTATTATTAC+TGG | - | chr3_4:721696-721715 | Msa0483900:CDS | 30.0% | |
| !!! | CCGAAACTTTCTTTTTTCTT+TGG | + | chr3_4:721821-721840 | None:intergenic | 30.0% |
| ! | AACTTTCCGATTTGAAGAAA+TGG | - | chr3_4:721931-721950 | Msa0483900:CDS | 30.0% |
| GTTACACCATTTCTTCAAAT+CGG | + | chr3_4:721940-721959 | None:intergenic | 30.0% | |
| ATTTCAATGGAAGGAATAGT+TGG | + | chr3_4:722110-722129 | None:intergenic | 30.0% | |
| ! | AATGATGGAATTTCAATGGA+AGG | + | chr3_4:722119-722138 | None:intergenic | 30.0% |
| ! | GGATAATGATGGAATTTCAA+TGG | + | chr3_4:722123-722142 | None:intergenic | 30.0% |
| TATGGACTCTTGTATAAACA+AGG | + | chr3_4:722255-722274 | None:intergenic | 30.0% | |
| AATTAAAGTCGGTTAATGGT+TGG | + | chr3_4:722325-722344 | None:intergenic | 30.0% | |
| CCTGTCATTAGAATTAAAGT+CGG | + | chr3_4:722336-722355 | None:intergenic | 30.0% | |
| CGACTTTAATTCTAATGACA+GGG | - | chr3_4:722334-722353 | Msa0483900:intron | 30.0% | |
| GGTATATAGAATTCATGAAC+TGG | + | chr3_4:722622-722641 | None:intergenic | 30.0% | |
| AAGGTGAAATTATTACTCAC+AGG | + | chr3_4:722643-722662 | None:intergenic | 30.0% | |
| !! | GACAAATATTTTTGACAGTG+TGG | + | chr3_4:722838-722857 | None:intergenic | 30.0% |
| CTGTCAAAAATATTTGTCAG+CGG | - | chr3_4:722840-722859 | Msa0483900:intron | 30.0% | |
| AAAAATATTTGTCAGCGGAA+AGG | - | chr3_4:722845-722864 | Msa0483900:intron | 30.0% | |
| !! | ATATTTTCTAGTGGCATTTC+TGG | + | chr3_4:722912-722931 | None:intergenic | 30.0% |
| AGAGTAGTGGTTATCTTATT+TGG | + | chr3_4:723022-723041 | None:intergenic | 30.0% | |
| ! | TCTAAAGTATTTCCTGTTAC+TGG | + | chr3_4:723292-723311 | None:intergenic | 30.0% |
| TTCAAGATAAGGTTGCTAAA+TGG | + | chr3_4:723328-723347 | None:intergenic | 30.0% | |
| TTTATCTTCCTTGAAAGAAG+AGG | - | chr3_4:723480-723499 | Msa0483900:CDS | 30.0% | |
| ! | TGATTTTTCCTCTTCTTTCA+AGG | + | chr3_4:723491-723510 | None:intergenic | 30.0% |
| GCTAAGCATATAATCTCTTT+AGG | - | chr3_4:723517-723536 | Msa0483900:CDS | 30.0% | |
| ATATGCAACTAGAATCTGAT+CGG | + | chr3_4:723627-723646 | None:intergenic | 30.0% | |
| GTTGCATATATAAGATAGCA+AGG | - | chr3_4:723638-723657 | Msa0483900:intron | 30.0% | |
| TGCATATATAAGATAGCAAG+GGG | - | chr3_4:723640-723659 | Msa0483900:intron | 30.0% | |
| !!! | TAGTGTTGCATTTTTTGTTG+GGG | + | chr3_4:723713-723732 | None:intergenic | 30.0% |
| TCATTGACAAAAGTTCAGTA+AGG | + | chr3_4:723738-723757 | None:intergenic | 30.0% | |
| ! | TTTTATCAGTGATGTACACT+TGG | + | chr3_4:723825-723844 | None:intergenic | 30.0% |
| GTATCAATGTTGTCAAATAG+AGG | - | chr3_4:723890-723909 | Msa0483900:intron | 30.0% | |
| CATAAAGTTCTGTCAAATAG+TGG | - | chr3_4:723992-724011 | Msa0483900:intron | 30.0% | |
| GTAGTTCAAAGTGTAATAAG+AGG | + | chr3_4:724264-724283 | None:intergenic | 30.0% | |
| CTTATTACACTTTGAACTAC+TGG | - | chr3_4:724264-724283 | Msa0483900:CDS | 30.0% | |
| !!! | GTTGAGGTTGTTTTTATAAG+AGG | - | chr3_4:724362-724381 | Msa0483900:intron | 30.0% |
| GAAAGTCTCTTTAACATTGA+AGG | + | chr3_4:724461-724480 | None:intergenic | 30.0% | |
| GTTTAGCATATACATAGAGA+TGG | - | chr3_4:724595-724614 | Msa0483900:CDS | 30.0% | |
| !!! | AGAGCTATTTTAATCTTGTG+TGG | - | chr3_4:724686-724705 | Msa0483900:CDS | 30.0% |
| TTAGAATCAATGATTGGTGA+TGG | - | chr3_4:725016-725035 | Msa0483900:CDS | 30.0% | |
| TAGACATGTAGATTTGATGA+GGG | - | chr3_4:725081-725100 | Msa0483900:CDS | 30.0% | |
| CTTTCTAAACAGTATAATGC+TGG | - | chr3_4:725139-725158 | Msa0483900:CDS | 30.0% | |
| CTTCAGTAAAATATCAGGTT+TGG | - | chr3_4:725264-725283 | Msa0483900:CDS | 30.0% | |
| TTATCACAAATAAACGGTGA+TGG | + | chr3_4:725292-725311 | None:intergenic | 30.0% | |
| ! | GTGGACTGTCTAATTAAATA+AGG | - | chr3_4:725513-725532 | Msa0483900:CDS | 30.0% |
| !! | TCTCAACCTATTTTTCACTT+TGG | + | chr3_4:725579-725598 | None:intergenic | 30.0% |
| !! | CAGAACACTTTTGAAGATTA+TGG | - | chr3_4:725745-725764 | Msa0483900:CDS | 30.0% |
| !! | ATGGACTAGTTGATGTATTA+TGG | - | chr3_4:725792-725811 | Msa0483900:CDS | 30.0% |
| TCAAGATCTTCTTTCCATCA+TGG | - | chr3_4:720937-720956 | Msa0483900:CDS | 35.0% | |
| GATCACTTGAATTACCATGA+TGG | + | chr3_4:720954-720973 | None:intergenic | 35.0% | |
| ! | CTCTTTTCACATTAGACACT+TGG | + | chr3_4:721230-721249 | None:intergenic | 35.0% |
| CAAGTGTCTAATGTGAAAAG+AGG | - | chr3_4:721228-721247 | Msa0483900:intron | 35.0% | |
| GAAAAGAGGCAAAGAAAAGA+AGG | - | chr3_4:721242-721261 | Msa0483900:intron | 35.0% | |
| AGAAAAGAAGGAACAATTGG+GGG | - | chr3_4:721254-721273 | Msa0483900:intron | 35.0% | |
| AATGGAAACTAGTGCTTTCA+CGG | + | chr3_4:721466-721485 | None:intergenic | 35.0% | |
| ACCGAAAATCTTCATCCTTT+AGG | + | chr3_4:721512-721531 | None:intergenic | 35.0% | |
| ! | AAAGGATGAAGATTTTCGGT+CGG | - | chr3_4:721512-721531 | Msa0483900:CDS | 35.0% |
| TCAAAGAGGAGAAACAATTG+TGG | + | chr3_4:721545-721564 | None:intergenic | 35.0% | |
| GGATCAAATATACAACACTG+AGG | + | chr3_4:721800-721819 | None:intergenic | 35.0% | |
| AATATTGTTGCCTGAGCTTT+GGG | - | chr3_4:721890-721909 | Msa0483900:CDS | 35.0% | |
| GAAGAAATGGTGTAACAACA+AGG | - | chr3_4:721944-721963 | Msa0483900:CDS | 35.0% | |
| AAATGGTGTAACAACAAGGA+AGG | - | chr3_4:721948-721967 | Msa0483900:CDS | 35.0% | |
| CCGACTTTAATTCTAATGAC+AGG | - | chr3_4:722333-722352 | Msa0483900:intron | 35.0% | |
| AGTTCAACTTCGTAGAATTG+AGG | + | chr3_4:722463-722482 | None:intergenic | 35.0% | |
| !! | AGCTTTGAAAATTGTGAGAG+AGG | - | chr3_4:722499-722518 | Msa0483900:CDS | 35.0% |
| AATTGTGAGAGAGGTTCTTA+TGG | - | chr3_4:722508-722527 | Msa0483900:CDS | 35.0% | |
| AATTCATGAACTGGTACTCT+TGG | + | chr3_4:722613-722632 | None:intergenic | 35.0% | |
| AAGATAACCACTACTCTTGA+TGG | - | chr3_4:723025-723044 | Msa0483900:CDS | 35.0% | |
| TTTCTTACCATCAAGAGTAG+TGG | + | chr3_4:723035-723054 | None:intergenic | 35.0% | |
| ACCTTCCTTCAGATAACAAA+TGG | - | chr3_4:723075-723094 | Msa0483900:CDS | 35.0% | |
| !! | TCCATTTGTTATCTGAAGGA+AGG | + | chr3_4:723079-723098 | None:intergenic | 35.0% |
| ATAAATTCCAGTGGTATGCT+TGG | + | chr3_4:723160-723179 | None:intergenic | 35.0% | |
| AGAGGACAAATAAATTCCAG+TGG | + | chr3_4:723169-723188 | None:intergenic | 35.0% | |
| !! | CTTGATGGCTTTTCTTTCAA+AGG | + | chr3_4:723239-723258 | None:intergenic | 35.0% |
| ! | CTTTGAAAGAAAAGCCATCA+AGG | - | chr3_4:723237-723256 | Msa0483900:CDS | 35.0% |
| ATCAAGGCATGGTTTCAAAA+GGG | - | chr3_4:723253-723272 | Msa0483900:CDS | 35.0% | |
| TTTGAGAGGCAAAATCAAGA+AGG | + | chr3_4:723390-723409 | None:intergenic | 35.0% | |
| ! | TCTTGATTTTGCCTCTCAAA+CGG | - | chr3_4:723390-723409 | Msa0483900:CDS | 35.0% |
| ! | TAAGTTAAAAAAGCGCGATG+AGG | - | chr3_4:723432-723451 | Msa0483900:CDS | 35.0% |
| !!! | GCTATCGTTTTCAAGTTACA+AGG | - | chr3_4:723454-723473 | Msa0483900:CDS | 35.0% |
| GAGGTTTGAACAAGGAAATT+TGG | - | chr3_4:723561-723580 | Msa0483900:CDS | 35.0% | |
| ! | CTGAACTTTTGTCAATGAAG+AGG | - | chr3_4:723740-723759 | Msa0483900:CDS | 35.0% |
| ! | GATGTCACTTGTTTCATAAG+TGG | - | chr3_4:724148-724167 | Msa0483900:CDS | 35.0% |
| AACCTTGTCATCATTTAAGC+TGG | + | chr3_4:724651-724670 | None:intergenic | 35.0% | |
| !! | ATAACCTGCTTGCTTTAAGA+TGG | + | chr3_4:724750-724769 | None:intergenic | 35.0% |
| AAGCAAGCAGGTTATAACAA+TGG | - | chr3_4:724755-724774 | Msa0483900:CDS | 35.0% | |
| AAGAGAACTTACCGATGAAA+TGG | + | chr3_4:724837-724856 | None:intergenic | 35.0% | |
| TCATTAAGTGACTCATGCAA+GGG | + | chr3_4:724911-724930 | None:intergenic | 35.0% | |
| TTCATTAAGTGACTCATGCA+AGG | + | chr3_4:724912-724931 | None:intergenic | 35.0% | |
| GTCACTTAATGAATGTGTCT+AGG | - | chr3_4:724919-724938 | Msa0483900:CDS | 35.0% | |
| GGAAGATGAAGAAGAAGAAA+TGG | - | chr3_4:724970-724989 | Msa0483900:CDS | 35.0% | |
| AGAAATGGATGAAGAGTTCA+TGG | - | chr3_4:724985-725004 | Msa0483900:CDS | 35.0% | |
| CTAGACATGTAGATTTGATG+AGG | - | chr3_4:725080-725099 | Msa0483900:CDS | 35.0% | |
| GTGGTAGTAAAGTAGTAGTT+AGG | - | chr3_4:725491-725510 | Msa0483900:CDS | 35.0% | |
| GTAGTAAAGTAGTAGTTAGG+TGG | - | chr3_4:725494-725513 | Msa0483900:CDS | 35.0% | |
| ATCAACTAGTCCATGAAGAA+GGG | + | chr3_4:725786-725805 | None:intergenic | 35.0% | |
| !!! | AACTGCATGCCATTTTGTAT+AGG | - | chr3_4:725825-725844 | Msa0483900:CDS | 35.0% |
| !!! | ACTGCATGCCATTTTGTATA+GGG | - | chr3_4:725826-725845 | Msa0483900:CDS | 35.0% |
| CAGATTCTCCCTATACAAAA+TGG | + | chr3_4:725837-725856 | None:intergenic | 35.0% | |
| AAGTGATCCTCTTCACTCTT+TGG | - | chr3_4:720966-720985 | Msa0483900:CDS | 40.0% | |
| CTATCTTCCAAAGAGTGAAG+AGG | + | chr3_4:720976-720995 | None:intergenic | 40.0% | |
| ! | GCACTAGTTTCCATTCTGAA+TGG | - | chr3_4:721471-721490 | Msa0483900:CDS | 40.0% |
| !! | AGAACACAATTCTGAGACCA+AGG | - | chr3_4:721584-721603 | Msa0483900:CDS | 40.0% |
| CTCAAGACTTGTAATCACCT+TGG | + | chr3_4:721604-721623 | None:intergenic | 40.0% | |
| CATAGAAAAAACTGCTGCTG+AGG | - | chr3_4:721638-721657 | Msa0483900:CDS | 40.0% | |
| ! | CTCAAGTACGATTTTACGTG+CGG | - | chr3_4:721735-721754 | Msa0483900:CDS | 40.0% |
| ! | TCAAGTACGATTTTACGTGC+GGG | - | chr3_4:721736-721755 | Msa0483900:CDS | 40.0% |
| CAATATTGTTGCCTGAGCTT+TGG | - | chr3_4:721889-721908 | Msa0483900:CDS | 40.0% | |
| ! | TACAAAGATTGGCTCAGTGA+AGG | - | chr3_4:722074-722093 | Msa0483900:CDS | 40.0% |
| !! | CGACTCGTAATGGATAATGA+TGG | + | chr3_4:722134-722153 | None:intergenic | 40.0% |
| ATTATCCATTACGAGTCGAC+AGG | - | chr3_4:722136-722155 | Msa0483900:intron | 40.0% | |
| !! | TAATACCTGTCGACTCGTAA+TGG | + | chr3_4:722144-722163 | None:intergenic | 40.0% |
| TAATGACAGGGAAGTTCACT+TGG | - | chr3_4:722346-722365 | Msa0483900:intron | 40.0% | |
| CTACGAAGTTGAACTTGATG+AGG | - | chr3_4:722468-722487 | Msa0483900:CDS | 40.0% | |
| GAGAGGTTCTTATGGTTCAA+CGG | - | chr3_4:722516-722535 | Msa0483900:CDS | 40.0% | |
| ! | TTTTGACAGTGTGGAATGTG+AGG | + | chr3_4:722829-722848 | None:intergenic | 40.0% |
| CTGCAGAAGAATGGAAAGAT+AGG | - | chr3_4:722882-722901 | Msa0483900:intron | 40.0% | |
| ATATTCTCCAAGCATACCAC+TGG | - | chr3_4:723150-723169 | Msa0483900:CDS | 40.0% | |
| AAAGGTTTGACCTGACTCTA+AGG | + | chr3_4:723221-723240 | None:intergenic | 40.0% | |
| AAAGAAAAGCCATCAAGGCA+TGG | - | chr3_4:723242-723261 | Msa0483900:CDS | 40.0% | |
| !!! | CTTTTGAAACCATGCCTTGA+TGG | + | chr3_4:723254-723273 | None:intergenic | 40.0% |
| CATCAAGGCATGGTTTCAAA+AGG | - | chr3_4:723252-723271 | Msa0483900:CDS | 40.0% | |
| AACAGAACATGTCCAGTAAC+AGG | - | chr3_4:723277-723296 | Msa0483900:CDS | 40.0% | |
| CGATCAAACGCTTCAAGATA+AGG | + | chr3_4:723339-723358 | None:intergenic | 40.0% | |
| ! | TGAAGCGTTTGATCGATAAC+TGG | - | chr3_4:723344-723363 | Msa0483900:CDS | 40.0% |
| TCAAACGGTGGAAAATTCGA+AGG | - | chr3_4:723405-723424 | Msa0483900:CDS | 40.0% | |
| TTCTTTCGTTTCTCTGTAGG+AGG | - | chr3_4:723542-723561 | Msa0483900:CDS | 40.0% | |
| TCTTGAGCTTCTTCACAGTA+AGG | - | chr3_4:723681-723700 | Msa0483900:CDS | 40.0% | |
| CACTTGTTTCATAAGTGGCT+TGG | - | chr3_4:724153-724172 | Msa0483900:CDS | 40.0% | |
| ! | TTGTTTCATAAGTGGCTTGG+TGG | - | chr3_4:724156-724175 | Msa0483900:CDS | 40.0% |
| !! | TGTTTCATAAGTGGCTTGGT+GGG | - | chr3_4:724157-724176 | Msa0483900:CDS | 40.0% |
| TAATAAGAGGACAGCGATGA+GGG | + | chr3_4:724251-724270 | None:intergenic | 40.0% | |
| AACAACCTCAACATCATGCA+AGG | + | chr3_4:724354-724373 | None:intergenic | 40.0% | |
| CTAGAACATATTTGCACTGC+AGG | - | chr3_4:724556-724575 | Msa0483900:intron | 40.0% | |
| TGCCAGCTTAAATGATGACA+AGG | - | chr3_4:724646-724665 | Msa0483900:CDS | 40.0% | |
| ! | TGTGGACATTTTTCTTCCAC+TGG | - | chr3_4:724704-724723 | Msa0483900:CDS | 40.0% |
| ACTACCATCTTAAAGCAAGC+AGG | - | chr3_4:724743-724762 | Msa0483900:CDS | 40.0% | |
| CTGAGAGATGATAGCTAAGA+AGG | + | chr3_4:725179-725198 | None:intergenic | 40.0% | |
| GCTCAAGTTCTTCATTCTCA+AGG | + | chr3_4:725213-725232 | None:intergenic | 40.0% | |
| GACACATATAATGAGACGGA+GGG | + | chr3_4:725362-725381 | None:intergenic | 40.0% | |
| TGACACATATAATGAGACGG+AGG | + | chr3_4:725363-725382 | None:intergenic | 40.0% | |
| ATTGGAGTGGTTGAAAGTAG+TGG | - | chr3_4:725472-725491 | Msa0483900:CDS | 40.0% | |
| GGTTGAGACAATGCAATGAT+CGG | - | chr3_4:725591-725610 | Msa0483900:CDS | 40.0% | |
| TCAACTAGTCCATGAAGAAG+GGG | + | chr3_4:725785-725804 | None:intergenic | 40.0% | |
| CATCAACTAGTCCATGAAGA+AGG | + | chr3_4:725787-725806 | None:intergenic | 40.0% | |
| ! | CAAGCAGCAGAAAAGTGCAA+AGG | - | chr3_4:720914-720933 | Msa0483900:CDS | 45.0% |
| ATTGGGGGAAAAGCCATTGA+AGG | - | chr3_4:721269-721288 | Msa0483900:intron | 45.0% | |
| ! | GTTTTGCGACTCTCCTTTTC+AGG | - | chr3_4:721860-721879 | Msa0483900:intron | 45.0% |
| AATATTGTCCGCGCCTGAAA+AGG | + | chr3_4:721876-721895 | None:intergenic | 45.0% | |
| ! | TGATTTTGCCTCTCAAACGG+TGG | - | chr3_4:723393-723412 | Msa0483900:CDS | 45.0% |
| ! | CGAATTTTCCACCGTTTGAG+AGG | + | chr3_4:723404-723423 | None:intergenic | 45.0% |
| GGGTTCTTTCGTTTCTCTGT+AGG | - | chr3_4:723539-723558 | Msa0483900:CDS | 45.0% | |
| CTCTGTAGGAGGTTTGAACA+AGG | - | chr3_4:723553-723572 | Msa0483900:CDS | 45.0% | |
| TTACGGATCGCAGAGTATAG+CGG | + | chr3_4:724053-724072 | None:intergenic | 45.0% | |
| AATAAGAGGACAGCGATGAG+GGG | + | chr3_4:724250-724269 | None:intergenic | 45.0% | |
| GTAATAAGAGGACAGCGATG+AGG | + | chr3_4:724252-724271 | None:intergenic | 45.0% | |
| !! | CTTAGCCTTGCATGATGTTG+AGG | - | chr3_4:724346-724365 | Msa0483900:CDS | 45.0% |
| !! | ATCTCCTAGCCTTGATGAAG+AGG | - | chr3_4:724793-724812 | Msa0483900:CDS | 45.0% |
| TGATCCTCTTCATCAAGGCT+AGG | + | chr3_4:724800-724819 | None:intergenic | 45.0% | |
| GCCTTGATGAAGAGGATCAA+CGG | - | chr3_4:724801-724820 | Msa0483900:CDS | 45.0% | |
| ACCGTTGATCCTCTTCATCA+AGG | + | chr3_4:724805-724824 | None:intergenic | 45.0% | |
| GAGATGATAGCTAAGAAGGC+AGG | + | chr3_4:725175-725194 | None:intergenic | 45.0% | |
| GCTATCATCTCTCAGCTGAA+AGG | - | chr3_4:725184-725203 | Msa0483900:CDS | 45.0% | |
| GATATTGCTCCCCTTCTTCA+TGG | - | chr3_4:725773-725792 | Msa0483900:CDS | 45.0% | |
| ! | TTTGGAGCAGCTTCTTGCAG+AGG | - | chr3_4:720879-720898 | Msa0483900:CDS | 50.0% |
| AGCAGCTTCTTGCAGAGGAA+GGG | - | chr3_4:720884-720903 | Msa0483900:CDS | 50.0% | |
| AATAGACGCTCCCAAAGCTC+AGG | + | chr3_4:721903-721922 | None:intergenic | 50.0% | |
| CTGTGGTGAGAATGGTTCGT+TGG | + | chr3_4:722395-722414 | None:intergenic | 50.0% | |
| CAACGAACCATTCTCACCAC+AGG | - | chr3_4:722393-722412 | Msa0483900:intron | 50.0% | |
| ACCATTCTCACCACAGGCAA+TGG | - | chr3_4:722399-722418 | Msa0483900:intron | 50.0% | |
| ACCATTGCCTGTGGTGAGAA+TGG | + | chr3_4:722403-722422 | None:intergenic | 50.0% | |
| TTCTTGCTGACCATTGCCTG+TGG | + | chr3_4:722412-722431 | None:intergenic | 50.0% | |
| GTCAGCGGAAAGGAACATCA+AGG | - | chr3_4:722855-722874 | Msa0483900:intron | 50.0% | |
| CAAGGACAGCTGCAGAAGAA+TGG | - | chr3_4:722873-722892 | Msa0483900:intron | 50.0% | |
| GAACCAGTCACCTTAGAGTC+AGG | - | chr3_4:723208-723227 | Msa0483900:CDS | 50.0% | |
| !! | TGACCTGACTCTAAGGTGAC+TGG | + | chr3_4:723214-723233 | None:intergenic | 50.0% |
| ATAACGGCGCTATAGCGTAG+TGG | - | chr3_4:723928-723947 | Msa0483900:intron | 50.0% | |
| ! | GCGATGAGGGGCTTTTCAAT+TGG | + | chr3_4:724238-724257 | None:intergenic | 50.0% |
| GAGCAGCTTCTTGCAGAGGA+AGG | - | chr3_4:720883-720902 | Msa0483900:CDS | 55.0% | |
| GGCTGTGAATGCCATTGCAG+AGG | - | chr3_4:724616-724635 | Msa0483900:CDS | 55.0% | |
| GGCATCAAGTGCCTCTGCAA+TGG | + | chr3_4:724630-724649 | None:intergenic | 55.0% | |
| !! | GCGACTCTCCTTTTCAGGCG+CGG | - | chr3_4:721865-721884 | Msa0483900:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 720868 | 725859 | 720868 | ID=Msa0483900;Name=Msa0483900 |
| chr3_4 | mRNA | 720868 | 725859 | 720868 | ID=Msa0483900-mRNA-1;Parent=Msa0483900;Name=Msa0483900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.14|0|1|1|1|8|0|1109 |
| chr3_4 | exon | 724570 | 725859 | 724570 | ID=Msa0483900-mRNA-1:exon:245;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 724085 | 724372 | 724085 | ID=Msa0483900-mRNA-1:exon:244;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 723681 | 723867 | 723681 | ID=Msa0483900-mRNA-1:exon:243;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 722966 | 723581 | 722966 | ID=Msa0483900-mRNA-1:exon:242;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 722442 | 722586 | 722442 | ID=Msa0483900-mRNA-1:exon:241;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 721883 | 722149 | 721883 | ID=Msa0483900-mRNA-1:exon:240;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 721339 | 721756 | 721339 | ID=Msa0483900-mRNA-1:exon:239;Parent=Msa0483900-mRNA-1 |
| chr3_4 | exon | 720868 | 720986 | 720868 | ID=Msa0483900-mRNA-1:exon:238;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 724570 | 725859 | 724570 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 724085 | 724372 | 724085 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 723681 | 723867 | 723681 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 722966 | 723581 | 722966 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 722442 | 722586 | 722442 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 721883 | 722149 | 721883 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 721339 | 721756 | 721339 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| chr3_4 | CDS | 720868 | 720986 | 720868 | ID=Msa0483900-mRNA-1:cds;Parent=Msa0483900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
