Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003790 | XP_003621006.1 | 92.335 | 1109 | 49 | 1 | 1 | 1109 | 1 | 1073 | 0.0 | 2046 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003790 | sp|C6L7U1|LIN1_LOTJA | 28.242 | 347 | 239 | 8 | 686 | 1030 | 805 | 1143 | 4.23e-24 | 114 |
| Msa1003790 | sp|C6L7U1|LIN1_LOTJA | 48.101 | 79 | 41 | 0 | 596 | 674 | 512 | 590 | 2.58e-18 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003790 | A2Q2S4 | 92.335 | 1109 | 49 | 1 | 1 | 1109 | 1 | 1073 | 0.0 | 2046 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa1003790 | 0.808798 | 2.595169e-50 | -8.615850e-47 |
| Msa0657340 | Msa1003790 | 0.815909 | 7.260458e-52 | -8.615850e-47 |
| Msa0672090 | Msa1003790 | 0.809976 | 1.449600e-50 | -8.615850e-47 |
| Msa0690100 | Msa1003790 | -0.803985 | 2.683586e-49 | -8.615850e-47 |
| Msa0694320 | Msa1003790 | 0.833469 | 5.239363e-56 | -8.615850e-47 |
| Msa0699170 | Msa1003790 | 0.804201 | 2.419969e-49 | -8.615850e-47 |
| Msa0701430 | Msa1003790 | 0.821570 | 3.764197e-53 | -8.615850e-47 |
| Msa0716620 | Msa1003790 | 0.804085 | 2.558456e-49 | -8.615850e-47 |
| Msa0720870 | Msa1003790 | 0.805654 | 1.202754e-49 | -8.615850e-47 |
| Msa0731580 | Msa1003790 | 0.826909 | 2.093816e-54 | -8.615850e-47 |
| Msa0744710 | Msa1003790 | 0.803251 | 3.811497e-49 | -8.615850e-47 |
| Msa0771810 | Msa1003790 | 0.808631 | 2.817346e-50 | -8.615850e-47 |
| Msa0789780 | Msa1003790 | 0.810135 | 1.339960e-50 | -8.615850e-47 |
| Msa0809920 | Msa1003790 | 0.809475 | 1.857732e-50 | -8.615850e-47 |
| Msa0826240 | Msa1003790 | 0.807693 | 4.462491e-50 | -8.615850e-47 |
| Msa0826360 | Msa1003790 | 0.810119 | 1.350426e-50 | -8.615850e-47 |
| Msa0829990 | Msa1003790 | 0.813194 | 2.896040e-51 | -8.615850e-47 |
| Msa0143640 | Msa1003790 | 0.810987 | 8.769088e-51 | -8.615850e-47 |
| Msa0183960 | Msa1003790 | -0.810759 | 9.825739e-51 | -8.615850e-47 |
| Msa0225280 | Msa1003790 | -0.807878 | 4.075498e-50 | -8.615850e-47 |
| Msa0374040 | Msa1003790 | 0.804374 | 2.227511e-49 | -8.615850e-47 |
| Msa0378320 | Msa1003790 | 0.802337 | 5.884041e-49 | -8.615850e-47 |
| Msa0390160 | Msa1003790 | 0.806630 | 7.492019e-50 | -8.615850e-47 |
| Msa0405200 | Msa1003790 | 0.801626 | 8.238999e-49 | -8.615850e-47 |
| Msa0405210 | Msa1003790 | 0.810436 | 1.153646e-50 | -8.615850e-47 |
| Msa0427660 | Msa1003790 | 0.815314 | 9.850215e-52 | -8.615850e-47 |
| Msa1001120 | Msa1003790 | 0.820451 | 6.812861e-53 | -8.615850e-47 |
| Msa1003730 | Msa1003790 | 0.887384 | 1.496016e-72 | -8.615850e-47 |
| Msa1003790 | Msa1003920 | 0.893818 | 4.411300e-75 | -8.615850e-47 |
| Msa1003790 | Msa1022490 | 0.801418 | 9.089333e-49 | -8.615850e-47 |
| Msa1003790 | Msa1022510 | 0.807141 | 5.842461e-50 | -8.615850e-47 |
| Msa1003790 | Msa1035050 | 0.807581 | 4.712448e-50 | -8.615850e-47 |
| Msa1003790 | Msa1057940 | -0.801945 | 7.087538e-49 | -8.615850e-47 |
| Msa1003790 | Msa1061840 | 0.804920 | 1.713802e-49 | -8.615850e-47 |
| Msa1003790 | Msa1062070 | 0.815606 | 8.482394e-52 | -8.615850e-47 |
| Msa1003790 | Msa1069250 | 0.800245 | 1.577922e-48 | -8.615850e-47 |
| Msa1003790 | Msa1075090 | 0.828425 | 9.055258e-55 | -8.615850e-47 |
| Msa1003790 | Msa1106680 | 0.802241 | 6.159344e-49 | -8.615850e-47 |
| Msa1003790 | Msa1107250 | 0.827702 | 1.352074e-54 | -8.615850e-47 |
| Msa1003790 | Msa1115980 | 0.823510 | 1.332494e-53 | -8.615850e-47 |
| Msa1003790 | Msa1123000 | 0.808098 | 3.658978e-50 | -8.615850e-47 |
| Msa1003790 | Msa1150740 | 0.830368 | 3.054512e-55 | -8.615850e-47 |
| Msa1003790 | Msa1150750 | 0.815759 | 7.840264e-52 | -8.615850e-47 |
| Msa1003790 | Msa1162430 | 0.844209 | 8.708362e-59 | -8.615850e-47 |
| Msa1003790 | Msa1174280 | 0.830460 | 2.900500e-55 | -8.615850e-47 |
| Msa1003790 | Msa1199540 | -0.802154 | 6.419390e-49 | -8.615850e-47 |
| Msa1003790 | Msa1202110 | 0.821824 | 3.287704e-53 | -8.615850e-47 |
| Msa1003790 | Msa1211610 | 0.824934 | 6.167312e-54 | -8.615850e-47 |
| Msa1003790 | Msa1239940 | 0.803980 | 2.690817e-49 | -8.615850e-47 |
| Msa1003790 | Msa1254870 | 0.817168 | 3.793456e-52 | -8.615850e-47 |
| Msa1003790 | Msa1277270 | -0.800873 | 1.175172e-48 | -8.615850e-47 |
| Msa1003790 | Msa1280460 | 0.806761 | 7.032235e-50 | -8.615850e-47 |
| Msa1003790 | Msa1281300 | 0.824806 | 6.612112e-54 | -8.615850e-47 |
| Msa1003790 | Msa1299480 | 0.825654 | 4.166986e-54 | -8.615850e-47 |
| Msa1003790 | Msa1309040 | 0.800082 | 1.702917e-48 | -8.615850e-47 |
| Msa1003790 | Msa1316960 | 0.805223 | 1.480712e-49 | -8.615850e-47 |
| Msa1003790 | Msa1320160 | 0.820696 | 5.983955e-53 | -8.615850e-47 |
| Msa1003790 | Msa1328430 | 0.817604 | 3.026113e-52 | -8.615850e-47 |
| Msa1003790 | Msa1399030 | 0.801384 | 9.237587e-49 | -8.615850e-47 |
| Msa1003790 | Msa1459920 | 0.815898 | 7.302402e-52 | -8.615850e-47 |
| Msa0242720 | Msa1003790 | 0.822203 | 2.685891e-53 | -8.615850e-47 |
| Msa0246140 | Msa1003790 | 0.823599 | 1.270378e-53 | -8.615850e-47 |
| Msa0267700 | Msa1003790 | 0.807715 | 4.414299e-50 | -8.615850e-47 |
| Msa0303900 | Msa1003790 | 0.806413 | 8.328045e-50 | -8.615850e-47 |
| Msa0319680 | Msa1003790 | 0.803699 | 3.077288e-49 | -8.615850e-47 |
| Msa0324810 | Msa1003790 | 0.811850 | 5.696500e-51 | -8.615850e-47 |
| Msa0333770 | Msa1003790 | 0.809913 | 1.495792e-50 | -8.615850e-47 |
| Msa0483900 | Msa1003790 | 0.918405 | 1.622637e-86 | -8.615850e-47 |
| Msa0493870 | Msa1003790 | 0.807313 | 5.372263e-50 | -8.615850e-47 |
| Msa0497680 | Msa1003790 | 0.806001 | 1.016640e-49 | -8.615850e-47 |
| Msa0518490 | Msa1003790 | 0.806749 | 7.071777e-50 | -8.615850e-47 |
| Msa0526840 | Msa1003790 | -0.806229 | 9.101823e-50 | -8.615850e-47 |
| Msa0535570 | Msa1003790 | 0.810305 | 1.231155e-50 | -8.615850e-47 |
| Msa0554770 | Msa1003790 | -0.800466 | 1.422138e-48 | -8.615850e-47 |
| Msa0565180 | Msa1003790 | 0.815349 | 9.676499e-52 | -8.615850e-47 |
| Msa0580840 | Msa1003790 | 0.809587 | 1.757965e-50 | -8.615850e-47 |
| Msa0583270 | Msa1003790 | -0.800324 | 1.520325e-48 | -8.615850e-47 |
| Msa0850480 | Msa1003790 | 0.810099 | 1.363977e-50 | -8.615850e-47 |
| Msa0865830 | Msa1003790 | 0.810241 | 1.270961e-50 | -8.615850e-47 |
| Msa0874750 | Msa1003790 | 0.814086 | 1.842690e-51 | -8.615850e-47 |
| Msa0901270 | Msa1003790 | 0.800503 | 1.397908e-48 | -8.615850e-47 |
| Msa0910610 | Msa1003790 | 0.801705 | 7.938003e-49 | -8.615850e-47 |
| Msa0971780 | Msa1003790 | -0.800722 | 1.261143e-48 | -8.615850e-47 |
| Msa0975950 | Msa1003790 | 0.801220 | 9.978179e-49 | -8.615850e-47 |
| Msa0976400 | Msa1003790 | 0.812311 | 4.520231e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003790 | MtrunA17_Chr7g0214471 | 92.335 | 1109 | 49 | 1 | 1 | 1109 | 1 | 1073 | 0.0 | 2046 |
| Msa1003790 | MtrunA17_Chr4g0043451 | 42.222 | 225 | 120 | 6 | 195 | 410 | 98 | 321 | 6.27e-43 | 160 |
| Msa1003790 | MtrunA17_Chr2g0291731 | 31.124 | 347 | 231 | 4 | 692 | 1035 | 566 | 907 | 2.07e-34 | 142 |
| Msa1003790 | MtrunA17_Chr2g0291731 | 34.672 | 274 | 131 | 9 | 165 | 422 | 41 | 282 | 1.72e-31 | 133 |
| Msa1003790 | MtrunA17_Chr1g0196911 | 28.321 | 399 | 253 | 13 | 637 | 1030 | 769 | 1139 | 8.92e-24 | 108 |
| Msa1003790 | MtrunA17_Chr1g0196911 | 36.667 | 120 | 76 | 0 | 596 | 715 | 507 | 626 | 1.42e-20 | 98.6 |
| Msa1003790 | MtrunA17_Chr1g0196911 | 24.710 | 259 | 157 | 5 | 200 | 422 | 8 | 264 | 2.03e-13 | 75.5 |
| Msa1003790 | MtrunA17_Chr8g0390311 | 50.633 | 79 | 39 | 0 | 585 | 663 | 385 | 463 | 1.35e-19 | 95.5 |
| Msa1003790 | MtrunA17_Chr8g0390311 | 25.872 | 344 | 241 | 7 | 692 | 1030 | 658 | 992 | 4.38e-15 | 80.9 |
| Msa1003790 | MtrunA17_Chr7g0275961 | 30.952 | 168 | 106 | 4 | 593 | 759 | 252 | 410 | 2.12e-15 | 81.6 |
| Msa1003790 | MtrunA17_Chr7g0237931 | 44.000 | 75 | 39 | 2 | 589 | 662 | 231 | 303 | 9.78e-14 | 75.5 |
| Msa1003790 | MtrunA17_Chr5g0413681 | 29.371 | 143 | 75 | 4 | 598 | 739 | 283 | 400 | 1.80e-13 | 75.1 |
| Msa1003790 | MtrunA17_Chr7g0248251 | 43.373 | 83 | 43 | 2 | 580 | 662 | 262 | 340 | 1.39e-12 | 72.0 |
| Msa1003790 | MtrunA17_Chr4g0031431 | 39.437 | 71 | 42 | 1 | 592 | 662 | 252 | 321 | 5.10e-12 | 70.1 |
| Msa1003790 | MtrunA17_Chr1g0199321 | 43.056 | 72 | 38 | 2 | 592 | 662 | 244 | 313 | 1.25e-11 | 68.9 |
| Msa1003790 | MtrunA17_Chr4g0044631 | 43.478 | 69 | 36 | 2 | 595 | 662 | 14 | 80 | 1.81e-11 | 67.8 |
| Msa1003790 | MtrunA17_Chr5g0434171 | 41.429 | 70 | 38 | 2 | 594 | 662 | 34 | 101 | 2.40e-11 | 67.4 |
| Msa1003790 | MtrunA17_Chr7g0234671 | 40.580 | 69 | 40 | 1 | 594 | 662 | 77 | 144 | 3.46e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003790 | AT5G09800.1 | 36.190 | 105 | 57 | 4 | 588 | 691 | 4 | 99 | 1.82e-11 | 68.2 |
| Msa1003790 | AT5G42340.1 | 31.783 | 129 | 81 | 3 | 583 | 711 | 278 | 399 | 2.37e-11 | 68.6 |
| Msa1003790 | AT1G49780.1 | 43.478 | 69 | 36 | 2 | 595 | 662 | 14 | 80 | 2.95e-11 | 67.4 |
| Msa1003790 | AT1G76390.1 | 40.000 | 85 | 45 | 2 | 599 | 678 | 29 | 112 | 3.09e-11 | 68.2 |
| Msa1003790 | AT1G76390.2 | 40.000 | 85 | 45 | 2 | 599 | 678 | 29 | 112 | 3.09e-11 | 68.2 |
| Msa1003790 | AT1G23030.1 | 30.709 | 127 | 79 | 3 | 594 | 719 | 240 | 358 | 3.37e-11 | 67.8 |
| Msa1003790 | AT1G68940.3 | 25.540 | 278 | 149 | 12 | 564 | 803 | 212 | 469 | 3.81e-11 | 68.2 |
| Msa1003790 | AT1G68940.2 | 25.806 | 279 | 147 | 12 | 564 | 803 | 265 | 522 | 4.45e-11 | 67.8 |
| Msa1003790 | AT1G68940.1 | 37.168 | 113 | 50 | 6 | 564 | 663 | 265 | 369 | 4.48e-11 | 67.8 |
| Msa1003790 | AT3G07360.1 | 35.165 | 91 | 55 | 2 | 572 | 662 | 54 | 140 | 9.21e-11 | 66.2 |
Find 155 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCATTATACACTTTC+TGG | 0.079952 | 7_1:+843284 | None:intergenic |
| AGAGTAGTGGTTATCTTATT+TGG | 0.178456 | 7_1:+842284 | None:intergenic |
| ATGGACTAGTTGATGTATTA+TGG | 0.202999 | 7_1:-839511 | Msa1003790:CDS |
| GCTAAGCATATAATCTCTTT+AGG | 0.228808 | 7_1:-841786 | Msa1003790:CDS |
| AGTATAAATGGCTTCATCTT+TGG | 0.231855 | 7_1:-844442 | None:intergenic |
| TCTAAAGTATTTCCTGTTAC+TGG | 0.241225 | 7_1:+842014 | None:intergenic |
| TCAAAGATATTTCTTGTTAG+AGG | 0.257806 | 7_1:+842119 | None:intergenic |
| ACTGTTTAAATTAGTTTCTA+TGG | 0.282515 | 7_1:+842367 | None:intergenic |
| CTAAGCATATAATCTCTTTA+GGG | 0.289542 | 7_1:-841785 | Msa1003790:CDS |
| AAGTGATCCTCTTCACTCTT+TGG | 0.296475 | 7_1:-844337 | Msa1003790:CDS |
| TTCAACTTCAGTAAAATATC+AGG | 0.299538 | 7_1:-840044 | Msa1003790:CDS |
| ATGCAGCTTAGTATTATTAC+TGG | 0.308391 | 7_1:-843607 | Msa1003790:CDS |
| ACCGAAAATCTTCATCCTTT+AGG | 0.313395 | 7_1:+843794 | None:intergenic |
| TTGCTTTATATTACAAAGAT+TGG | 0.314400 | 7_1:-843240 | Msa1003790:CDS |
| TATAATGAAAGTTTGGATTC+AGG | 0.314769 | 7_1:-843274 | Msa1003790:CDS |
| GAGGTTTGAACAAGGAAATT+TGG | 0.318367 | 7_1:-841742 | Msa1003790:CDS |
| AATATTGTTGCCTGAGCTTT+GGG | 0.324455 | 7_1:-843413 | Msa1003790:CDS |
| GATATTGCTCCCCTTCTTCA+TGG | 0.330057 | 7_1:-839530 | Msa1003790:CDS |
| AAAGGTTTGACCTGACTCTA+AGG | 0.336122 | 7_1:+842085 | None:intergenic |
| GAAAGTGTATAATGAAAGTT+TGG | 0.337823 | 7_1:-843281 | Msa1003790:CDS |
| CAATATTGTTGCCTGAGCTT+TGG | 0.341650 | 7_1:-843414 | Msa1003790:CDS |
| CAGATTCTCCCTATACAAAA+TGG | 0.348155 | 7_1:+839469 | None:intergenic |
| AATTGTGAGAGAGGTTCTTA+TGG | 0.355397 | 7_1:-842795 | Msa1003790:CDS |
| AACTTTCCGATTTGAAGAAA+TGG | 0.358300 | 7_1:-843372 | Msa1003790:CDS |
| ATTCTGAATGGATACATAGA+AGG | 0.362268 | 7_1:-843820 | Msa1003790:CDS |
| GGAAGATGAAGAAGAAGAAA+TGG | 0.363565 | 7_1:-840333 | Msa1003790:CDS |
| TTCAAGATAAGGTTGCTAAA+TGG | 0.373088 | 7_1:+841978 | None:intergenic |
| CAAAGAAAAGAAGGAACAAT+TGG | 0.374214 | 7_1:-844052 | Msa1003790:CDS |
| CGATCAAACGCTTCAAGATA+AGG | 0.376909 | 7_1:+841967 | None:intergenic |
| AAGATAACCACTACTCTTGA+TGG | 0.379583 | 7_1:-842278 | Msa1003790:intron |
| CTTATTACACTTTGAACTAC+TGG | 0.379975 | 7_1:-841039 | Msa1003790:intron |
| GTTACACCATTTCTTCAAAT+CGG | 0.401323 | 7_1:+843366 | None:intergenic |
| TGAAGCGTTTGATCGATAAC+TGG | 0.401553 | 7_1:-841959 | Msa1003790:CDS |
| CTTCAGTAAAATATCAGGTT+TGG | 0.408794 | 7_1:-840039 | Msa1003790:CDS |
| AACAGAACATGTCCAGTAAC+AGG | 0.413541 | 7_1:-842026 | Msa1003790:CDS |
| GGGTTCTTTCGTTTCTCTGT+AGG | 0.417240 | 7_1:-841764 | Msa1003790:CDS |
| ATTTCAATGGAAGGAATAGT+TGG | 0.417441 | 7_1:+843196 | None:intergenic |
| CTGCAGAAGAATGGAAAGAT+AGG | 0.418024 | 7_1:-842421 | Msa1003790:CDS |
| AATTCATCAGATAGTGATAG+TGG | 0.427587 | 7_1:-844120 | Msa1003790:CDS |
| AATTCATGAACTGGTACTCT+TGG | 0.428025 | 7_1:+842693 | None:intergenic |
| CATCAAGGCATGGTTTCAAA+AGG | 0.431872 | 7_1:-842051 | Msa1003790:CDS |
| TCTTGAGCTTCTTCACAGTA+AGG | 0.432710 | 7_1:-841622 | Msa1003790:CDS |
| AAAGAAAAGAAGGAACAATT+GGG | 0.435116 | 7_1:-844051 | Msa1003790:CDS |
| AAGAGAACTTACCGATGAAA+TGG | 0.438605 | 7_1:+840469 | None:intergenic |
| AGAAATGGATGAAGAGTTCA+TGG | 0.439803 | 7_1:-840318 | Msa1003790:CDS |
| GATGTCACTTGTTTCATAAG+TGG | 0.443353 | 7_1:-841155 | Msa1003790:CDS |
| AACCTTGTCATCATTTAAGC+TGG | 0.455375 | 7_1:+840655 | None:intergenic |
| TCTAACAAGAAATATCTTTG+AGG | 0.458719 | 7_1:-842117 | Msa1003790:CDS |
| CAAGGACAGCTGCAGAAGAA+TGG | 0.461431 | 7_1:-842430 | Msa1003790:CDS |
| ATAACCTGCTTGCTTTAAGA+TGG | 0.462403 | 7_1:+840556 | None:intergenic |
| CTTTCTAAACAGTATAATGC+TGG | 0.465237 | 7_1:-840164 | Msa1003790:CDS |
| AACTTGTTAGAATCAATGAT+TGG | 0.465459 | 7_1:-840293 | Msa1003790:CDS |
| AATGGAAACTAGTGCTTTCA+CGG | 0.469991 | 7_1:+843840 | None:intergenic |
| CACTTGTTTCATAAGTGGCT+TGG | 0.471150 | 7_1:-841150 | Msa1003790:CDS |
| AATATTGTCCGCGCCTGAAA+AGG | 0.474016 | 7_1:+843430 | None:intergenic |
| GGATAATGATGGAATTTCAA+TGG | 0.474085 | 7_1:+843183 | None:intergenic |
| GCACTAGTTTCCATTCTGAA+TGG | 0.474787 | 7_1:-843832 | Msa1003790:CDS |
| ACCGTTGATCCTCTTCATCA+AGG | 0.476455 | 7_1:+840501 | None:intergenic |
| TAATACCTGTCGACTCGTAA+TGG | 0.478741 | 7_1:+843162 | None:intergenic |
| CTTGTTTAATAACTGTTACA+TGG | 0.480104 | 7_1:-840199 | Msa1003790:CDS |
| ATAAATTCCAGTGGTATGCT+TGG | 0.480143 | 7_1:+842146 | None:intergenic |
| CATCAACTAGTCCATGAAGA+AGG | 0.482713 | 7_1:+839519 | None:intergenic |
| AGTTCAACTTCGTAGAATTG+AGG | 0.484002 | 7_1:+842843 | None:intergenic |
| CAAGTGTCTAATGTGAAAAG+AGG | 0.484843 | 7_1:-844075 | Msa1003790:CDS |
| ATCTCCTAGCCTTGATGAAG+AGG | 0.488093 | 7_1:-840510 | Msa1003790:CDS |
| CTGAGAGATGATAGCTAAGA+AGG | 0.488827 | 7_1:+840127 | None:intergenic |
| ACCATTGCCTGTGGTGAGAA+TGG | 0.489720 | 7_1:+842903 | None:intergenic |
| TTTGAATTTCATTCAACTTG+AGG | 0.494489 | 7_1:-843743 | Msa1003790:CDS |
| GCTCAAGTTCTTCATTCTCA+AGG | 0.497709 | 7_1:+840093 | None:intergenic |
| TTTATCTTCCTTGAAAGAAG+AGG | 0.499919 | 7_1:-841823 | Msa1003790:CDS |
| AGCATATATGAATCCTTCAA+TGG | 0.500188 | 7_1:+844021 | None:intergenic |
| TCAAGATCTTCTTTCCATCA+TGG | 0.500865 | 7_1:-844366 | Msa1003790:CDS |
| TTGTTTCATAAGTGGCTTGG+TGG | 0.501437 | 7_1:-841147 | Msa1003790:CDS |
| GTAGTTCAAAGTGTAATAAG+AGG | 0.504871 | 7_1:+841042 | None:intergenic |
| AGAATCTAAACATCTAGATA+TGG | 0.504905 | 7_1:+840244 | None:intergenic |
| GGTATATAGAATTCATGAAC+TGG | 0.505922 | 7_1:+842684 | None:intergenic |
| CTTTGAAAGAAAAGCCATCA+AGG | 0.514152 | 7_1:-842066 | Msa1003790:CDS |
| GAACCAGTCACCTTAGAGTC+AGG | 0.515046 | 7_1:-842095 | Msa1003790:CDS |
| TTCTTTCGTTTCTCTGTAGG+AGG | 0.515913 | 7_1:-841761 | Msa1003790:CDS |
| GAAAAGAGGCAAAGAAAAGA+AGG | 0.518665 | 7_1:-844061 | Msa1003790:CDS |
| TTCTATGTATCCATTCAGAA+TGG | 0.519813 | 7_1:+843822 | None:intergenic |
| TGACCTGACTCTAAGGTGAC+TGG | 0.520938 | 7_1:+842092 | None:intergenic |
| TAATGACAGGGAAGTTCACT+TGG | 0.526782 | 7_1:-842957 | Msa1003790:intron |
| TTATCACAAATAAACGGTGA+TGG | 0.533604 | 7_1:+840014 | None:intergenic |
| GTTAAATGTAACCATTTCAT+CGG | 0.537976 | 7_1:-840480 | Msa1003790:intron |
| ATCAACTAGTCCATGAAGAA+GGG | 0.539153 | 7_1:+839520 | None:intergenic |
| GAGCAGCTTCTTGCAGAGGA+AGG | 0.539321 | 7_1:-844420 | Msa1003790:CDS |
| TCATTGACAAAAGTTCAGTA+AGG | 0.539896 | 7_1:+841568 | None:intergenic |
| AGCAGCTTCTTGCAGAGGAA+GGG | 0.540666 | 7_1:-844419 | Msa1003790:CDS |
| AGCTTTGAAAATTGTGAGAG+AGG | 0.541901 | 7_1:-842804 | Msa1003790:CDS |
| CTCTGTAGGAGGTTTGAACA+AGG | 0.545055 | 7_1:-841750 | Msa1003790:CDS |
| GAGATGATAGCTAAGAAGGC+AGG | 0.545629 | 7_1:+840131 | None:intergenic |
| AATAGACGCTCCCAAAGCTC+AGG | 0.545942 | 7_1:+843403 | None:intergenic |
| ATATTCTCCAAGCATACCAC+TGG | 0.546873 | 7_1:-842153 | Msa1003790:CDS |
| CGACTCGTAATGGATAATGA+TGG | 0.548637 | 7_1:+843172 | None:intergenic |
| AATGATGGAATTTCAATGGA+AGG | 0.548712 | 7_1:+843187 | None:intergenic |
| GGCATCAAGTGCCTCTGCAA+TGG | 0.549842 | 7_1:+840676 | None:intergenic |
| TAATAAGAGGACAGCGATGA+GGG | 0.550715 | 7_1:+841055 | None:intergenic |
| CTCAAGACTTGTAATCACCT+TGG | 0.550915 | 7_1:+843702 | None:intergenic |
| ACCATTCTCACCACAGGCAA+TGG | 0.555072 | 7_1:-842904 | Msa1003790:CDS |
| CTAGACATGTAGATTTGATG+AGG | 0.555129 | 7_1:-840223 | Msa1003790:CDS |
| GTTGCATATATAAGATAGCA+AGG | 0.557196 | 7_1:-841665 | Msa1003790:CDS |
| TCAAACTGTGGAAAATTCGA+AGG | 0.557962 | 7_1:-841898 | Msa1003790:CDS |
| ATCAAGGCATGGTTTCAAAA+GGG | 0.559344 | 7_1:-842050 | Msa1003790:CDS |
| TTAGAATCAATGATTGGTGA+TGG | 0.561943 | 7_1:-840287 | Msa1003790:CDS |
| TGTTTCATAAGTGGCTTGGT+GGG | 0.563564 | 7_1:-841146 | Msa1003790:CDS |
| ACTACCATCTTAAAGCAAGC+AGG | 0.563960 | 7_1:-840560 | Msa1003790:CDS |
| ATTATCCATTACGAGTCGAC+AGG | 0.568253 | 7_1:-843167 | Msa1003790:intron |
| TTCTTGCTGACCATTGCCTG+TGG | 0.569635 | 7_1:+842894 | None:intergenic |
| AAAGAAAAGCCATCAAGGCA+TGG | 0.569716 | 7_1:-842061 | Msa1003790:CDS |
| ATTATACTGTTTAGAAAGTG+AGG | 0.571728 | 7_1:+840169 | None:intergenic |
| TTTCTTACCATCAAGAGTAG+TGG | 0.572397 | 7_1:+842271 | None:intergenic |
| GCCTTGATGAAGAGGATCAA+CGG | 0.572641 | 7_1:-840502 | Msa1003790:CDS |
| CTACGAAGTTGAACTTGATG+AGG | 0.574721 | 7_1:-842835 | Msa1003790:CDS |
| TAGACATGTAGATTTGATGA+GGG | 0.575230 | 7_1:-840222 | Msa1003790:CDS |
| ATTATTTGTTATCATTCCAG+TGG | 0.576441 | 7_1:+840583 | None:intergenic |
| TTGCATATATAAGATAGCAA+GGG | 0.577003 | 7_1:-841664 | Msa1003790:CDS |
| TGATCCTCTTCATCAAGGCT+AGG | 0.580353 | 7_1:+840506 | None:intergenic |
| TACAAAGATTGGCTCAGTGA+AGG | 0.585870 | 7_1:-843229 | Msa1003790:CDS |
| GCTATCATCTCTCAGCTGAA+AGG | 0.587912 | 7_1:-840119 | Msa1003790:CDS |
| CTATCTTCCAAAGAGTGAAG+AGG | 0.591307 | 7_1:+844330 | None:intergenic |
| ATTGCTAATCTGATATCTTG+AGG | 0.599893 | 7_1:+844251 | None:intergenic |
| TTTGGAGCAGCTTCTTGCAG+AGG | 0.601323 | 7_1:-844424 | Msa1003790:CDS |
| GATCACTTGAATTACCATGA+TGG | 0.601325 | 7_1:+844352 | None:intergenic |
| ATATGCAACTAGAATCTGAT+CGG | 0.602029 | 7_1:+841679 | None:intergenic |
| ATACATAGAAGGTTTCCTAA+AGG | 0.605198 | 7_1:-843809 | Msa1003790:CDS |
| CAACGAACCATTCTCACCAC+AGG | 0.605684 | 7_1:-842910 | Msa1003790:CDS |
| AGAACACAATTCTGAGACCA+AGG | 0.607133 | 7_1:-843719 | Msa1003790:CDS |
| TATATGCTTAGACAATTGAG+TGG | 0.608616 | 7_1:-844006 | Msa1003790:CDS |
| AAGCAAGCAGGTTATAACAA+TGG | 0.617066 | 7_1:-840548 | Msa1003790:CDS |
| AAATGGTGTAACAACAAGGA+AGG | 0.617237 | 7_1:-843355 | Msa1003790:CDS |
| GAGAGGTTCTTATGGTTCAA+CGG | 0.617845 | 7_1:-842787 | Msa1003790:CDS |
| TGCCAGCTTAAATGATGACA+AGG | 0.619717 | 7_1:-840657 | Msa1003790:CDS |
| GTTTAGCATATACATAGAGA+TGG | 0.619765 | 7_1:-840708 | Msa1003790:CDS |
| CAAGCAGCAGAAAAGTGCAA+AGG | 0.625671 | 7_1:-844389 | Msa1003790:CDS |
| TGCATATATAAGATAGCAAG+GGG | 0.634241 | 7_1:-841663 | Msa1003790:CDS |
| TTTGAGAGGCAAAATCAAGA+AGG | 0.635942 | 7_1:+841916 | None:intergenic |
| TAAGCATATAATCTCTTTAG+GGG | 0.637602 | 7_1:-841784 | Msa1003790:CDS |
| GACACATATAATGAGACGGA+GGG | 0.637757 | 7_1:+839944 | None:intergenic |
| TCAACTAGTCCATGAAGAAG+GGG | 0.638307 | 7_1:+839521 | None:intergenic |
| GAAACAAGTTAAATAACGAA+CGG | 0.643223 | 7_1:-844179 | Msa1003790:CDS |
| GTCAGCGGAAAGGAACATCA+AGG | 0.646932 | 7_1:-842448 | Msa1003790:intron |
| AAATGACACATATAATGAGA+CGG | 0.651445 | 7_1:+839940 | None:intergenic |
| CTGTGGTGAGAATGGTTCGT+TGG | 0.657069 | 7_1:+842911 | None:intergenic |
| GAAGAAATGGTGTAACAACA+AGG | 0.657881 | 7_1:-843359 | Msa1003790:CDS |
| AAGTTGAATGAAATTCAAAG+AGG | 0.660155 | 7_1:+843747 | None:intergenic |
| GTAATAAGAGGACAGCGATG+AGG | 0.664032 | 7_1:+841054 | None:intergenic |
| TCAAAGAGGAGAAACAATTG+TGG | 0.665172 | 7_1:+843761 | None:intergenic |
| GGCTGTGAATGCCATTGCAG+AGG | 0.666777 | 7_1:-840687 | Msa1003790:CDS |
| AAGAAAAGAAGGAACAATTG+GGG | 0.676981 | 7_1:-844050 | Msa1003790:CDS |
| AGAAAAGAAGGAACAATTGG+GGG | 0.678559 | 7_1:-844049 | Msa1003790:CDS |
| AATAAGAGGACAGCGATGAG+GGG | 0.685162 | 7_1:+841056 | None:intergenic |
| AGAGGACAAATAAATTCCAG+TGG | 0.687209 | 7_1:+842137 | None:intergenic |
| TGACACATATAATGAGACGG+AGG | 0.700368 | 7_1:+839943 | None:intergenic |
| GGATCAAATATACAACACTG+AGG | 0.761941 | 7_1:+843506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAAAAAAATATACAAA+AGG | + | chr7_1:841260-841279 | None:intergenic | 10.0% |
| !! | ACTAAAATATTCAAATTAAT+TGG | - | chr7_1:844052-844071 | Msa1003790:CDS | 10.0% |
| !!! | AGTGATAATAATGTTTTTAT+AGG | - | chr7_1:839700-839719 | Msa1003790:intron | 15.0% |
| !! | ACTATAAATAATTATACTGT+AGG | + | chr7_1:841310-841329 | None:intergenic | 15.0% |
| !!! | TTCTTTGTTTTTGTTTTTAA+TGG | - | chr7_1:843454-843473 | Msa1003790:CDS | 15.0% |
| !!! | AGATTTTTATCACAAATAAA+CGG | + | chr7_1:843896-843915 | None:intergenic | 15.0% |
| !! | TTGCTTTATATTACAAAGAT+TGG | - | chr7_1:840661-840680 | Msa1003790:CDS | 20.0% |
| !!! | TTATCTTCATCATTTTCATA+TGG | + | chr7_1:840871-840890 | None:intergenic | 20.0% |
| !!! | ACTGTTTAAATTAGTTTCTA+TGG | + | chr7_1:841537-841556 | None:intergenic | 20.0% |
| !! | TGGTAAGAAAAATAATATGT+TGG | - | chr7_1:841643-841662 | Msa1003790:CDS | 20.0% |
| !!! | TGCATTTTACATAAACATTT+TGG | - | chr7_1:841716-841735 | Msa1003790:CDS | 20.0% |
| !!! | GTGAGATTTTTATCAAATTT+TGG | - | chr7_1:842360-842379 | Msa1003790:CDS | 20.0% |
| !! | TCTTTCGAAATATTATTTAC+TGG | - | chr7_1:842700-842719 | Msa1003790:CDS | 20.0% |
| !!! | CTATTTATTTTGTAGAAGAA+AGG | - | chr7_1:842724-842743 | Msa1003790:CDS | 20.0% |
| !! | ATTGAATTTCATTCATTGTT+TGG | + | chr7_1:843110-843129 | None:intergenic | 20.0% |
| !! | TCATTTAGTTAAAAAATGAC+AGG | - | chr7_1:843547-843566 | Msa1003790:CDS | 20.0% |
| !! | GATAAAAATCTTGCTAATTT+CGG | - | chr7_1:843905-843924 | Msa1003790:CDS | 20.0% |
| !! | AATATTCAAATTAATTGGAG+TGG | - | chr7_1:844057-844076 | Msa1003790:CDS | 20.0% |
| !! | ATCGTAAAAAAGTTAATAAG+TGG | - | chr7_1:844139-844158 | Msa1003790:CDS | 20.0% |
| !! | TCATATCTATAAACTAGTAT+CGG | + | chr7_1:844252-844271 | None:intergenic | 20.0% |
| ! | GAAACAAGTTAAATAACGAA+CGG | - | chr7_1:839722-839741 | Msa1003790:intron | 25.0% |
| ! | AAAGAAAAGAAGGAACAATT+GGG | - | chr7_1:839850-839869 | Msa1003790:intron | 25.0% |
| ! | AAGTTGAATGAAATTCAAAG+AGG | + | chr7_1:840157-840176 | None:intergenic | 25.0% |
| ! | TTTGAATTTCATTCAACTTG+AGG | - | chr7_1:840158-840177 | Msa1003790:CDS | 25.0% |
| ! | CCAAAGAAAAAAGAAAGTTT+CGG | - | chr7_1:840416-840435 | Msa1003790:intron | 25.0% |
| ! | AACTTTCATTATACACTTTC+TGG | + | chr7_1:840620-840639 | None:intergenic | 25.0% |
| !! | GAAAGTGTATAATGAAAGTT+TGG | - | chr7_1:840620-840639 | Msa1003790:CDS | 25.0% |
| ! | TATAATGAAAGTTTGGATTC+AGG | - | chr7_1:840627-840646 | Msa1003790:CDS | 25.0% |
| ! | TTGATCGATAATGAATACAA+AGG | - | chr7_1:840826-840845 | Msa1003790:intron | 25.0% |
| ! | TTAGAATTAAAGTCGGTTAA+TGG | + | chr7_1:840927-840946 | None:intergenic | 25.0% |
| !! | TATGGAGAAATATTTTCTAG+TGG | + | chr7_1:841519-841538 | None:intergenic | 25.0% |
| !!! | ATTTCATTTGCTTTTTCATG+AGG | + | chr7_1:841578-841597 | None:intergenic | 25.0% |
| !!! | AAAATCCATTTGTTATCTGA+AGG | + | chr7_1:841681-841700 | None:intergenic | 25.0% |
| !!! | TTACATAAACATTTTGGTGT+AGG | - | chr7_1:841722-841741 | Msa1003790:CDS | 25.0% |
| ! | TCAAAGATATTTCTTGTTAG+AGG | + | chr7_1:841785-841804 | None:intergenic | 25.0% |
| ! | TCTAACAAGAAATATCTTTG+AGG | - | chr7_1:841784-841803 | Msa1003790:CDS | 25.0% |
| ! | CTAAGCATATAATCTCTTTA+GGG | - | chr7_1:842116-842135 | Msa1003790:CDS | 25.0% |
| ! | TAAGCATATAATCTCTTTAG+GGG | - | chr7_1:842117-842136 | Msa1003790:CDS | 25.0% |
| ! | TTGCATATATAAGATAGCAA+GGG | - | chr7_1:842237-842256 | Msa1003790:intron | 25.0% |
| !!! | ATAGTGTTGCATTTTTTGTT+GGG | + | chr7_1:842312-842331 | None:intergenic | 25.0% |
| !!! | AATAGTGTTGCATTTTTTGT+TGG | + | chr7_1:842313-842332 | None:intergenic | 25.0% |
| ! | CAAATAGAGGTTATAAATAG+CGG | - | chr7_1:842501-842520 | Msa1003790:intron | 25.0% |
| ! | GTTATAAATAGCGGTTATAA+CGG | - | chr7_1:842510-842529 | Msa1003790:intron | 25.0% |
| ! | CAGAATAGTGTTATCAATTA+CGG | + | chr7_1:842668-842687 | None:intergenic | 25.0% |
| !!! | TTGAGGTTGTTTTTATAAGA+GGG | - | chr7_1:842961-842980 | Msa1003790:intron | 25.0% |
| ! | ATAGACTGTTCAATATTTAG+AGG | + | chr7_1:843003-843022 | None:intergenic | 25.0% |
| ! | ATATTTAAAGATCAAGTGAC+TGG | - | chr7_1:843026-843045 | Msa1003790:intron | 25.0% |
| ! | AAAGTCTCTTTAACATTGAA+GGG | + | chr7_1:843058-843077 | None:intergenic | 25.0% |
| !! | ATGTATATGCTAAACTTTTG+AGG | + | chr7_1:843188-843207 | None:intergenic | 25.0% |
| !!! | ATTATTTGTTATCATTCCAG+TGG | + | chr7_1:843321-843340 | None:intergenic | 25.0% |
| ! | GTTAAATGTAACCATTTCAT+CGG | - | chr7_1:843421-843440 | Msa1003790:CDS | 25.0% |
| !!! | AACTTGTTAGAATCAATGAT+TGG | - | chr7_1:843608-843627 | Msa1003790:CDS | 25.0% |
| ! | AGAATCTAAACATCTAGATA+TGG | + | chr7_1:843660-843679 | None:intergenic | 25.0% |
| ! | CTTGTTTAATAACTGTTACA+TGG | - | chr7_1:843702-843721 | Msa1003790:CDS | 25.0% |
| ! | ATTATACTGTTTAGAAAGTG+AGG | + | chr7_1:843735-843754 | None:intergenic | 25.0% |
| !! | TATTTTACTGAAGTTGAACA+AGG | + | chr7_1:843855-843874 | None:intergenic | 25.0% |
| ! | TTCAACTTCAGTAAAATATC+AGG | - | chr7_1:843857-843876 | Msa1003790:CDS | 25.0% |
| ! | AAATGACACATATAATGAGA+CGG | + | chr7_1:843964-843983 | None:intergenic | 25.0% |
| !!! | CTCATTATATGTGTCATTTT+AGG | - | chr7_1:843965-843984 | Msa1003790:CDS | 25.0% |
| ! | GATATTCCAAAGTGAAAAAT+AGG | - | chr7_1:844168-844187 | Msa1003790:CDS | 25.0% |
| ATTGCTAATCTGATATCTTG+AGG | + | chr7_1:839653-839672 | None:intergenic | 30.0% | |
| AATTCATCAGATAGTGATAG+TGG | - | chr7_1:839781-839800 | Msa1003790:intron | 30.0% | |
| CAAAGAAAAGAAGGAACAAT+TGG | - | chr7_1:839849-839868 | Msa1003790:intron | 30.0% | |
| AAGAAAAGAAGGAACAATTG+GGG | - | chr7_1:839851-839870 | Msa1003790:intron | 30.0% | |
| AGCATATATGAATCCTTCAA+TGG | + | chr7_1:839883-839902 | None:intergenic | 30.0% | |
| TATATGCTTAGACAATTGAG+TGG | - | chr7_1:839895-839914 | Msa1003790:intron | 30.0% | |
| TTCTATGTATCCATTCAGAA+TGG | + | chr7_1:840082-840101 | None:intergenic | 30.0% | |
| ATTCTGAATGGATACATAGA+AGG | - | chr7_1:840081-840100 | Msa1003790:CDS | 30.0% | |
| ATACATAGAAGGTTTCCTAA+AGG | - | chr7_1:840092-840111 | Msa1003790:CDS | 30.0% | |
| ! | TCCTAAAGGATGAAGATTTT+CGG | - | chr7_1:840106-840125 | Msa1003790:CDS | 30.0% |
| ATGCAGCTTAGTATTATTAC+TGG | - | chr7_1:840294-840313 | Msa1003790:CDS | 30.0% | |
| !!! | CCGAAACTTTCTTTTTTCTT+TGG | + | chr7_1:840419-840438 | None:intergenic | 30.0% |
| ! | AACTTTCCGATTTGAAGAAA+TGG | - | chr7_1:840529-840548 | Msa1003790:CDS | 30.0% |
| GTTACACCATTTCTTCAAAT+CGG | + | chr7_1:840538-840557 | None:intergenic | 30.0% | |
| ATTTCAATGGAAGGAATAGT+TGG | + | chr7_1:840708-840727 | None:intergenic | 30.0% | |
| ! | AATGATGGAATTTCAATGGA+AGG | + | chr7_1:840717-840736 | None:intergenic | 30.0% |
| ! | GGATAATGATGGAATTTCAA+TGG | + | chr7_1:840721-840740 | None:intergenic | 30.0% |
| TATGGACTCTTGTATAAACA+AGG | + | chr7_1:840853-840872 | None:intergenic | 30.0% | |
| AATTAAAGTCGGTTAATGGT+TGG | + | chr7_1:840923-840942 | None:intergenic | 30.0% | |
| CCTGTCATTAGAATTAAAGT+CGG | + | chr7_1:840934-840953 | None:intergenic | 30.0% | |
| CGACTTTAATTCTAATGACA+GGG | - | chr7_1:840932-840951 | Msa1003790:intron | 30.0% | |
| GGTATATAGAATTCATGAAC+TGG | + | chr7_1:841220-841239 | None:intergenic | 30.0% | |
| AAGGTGAAATTATTACTCAC+AGG | + | chr7_1:841241-841260 | None:intergenic | 30.0% | |
| !! | GACAAATATTTTTGACAGTG+TGG | + | chr7_1:841436-841455 | None:intergenic | 30.0% |
| CTGTCAAAAATATTTGTCAG+CGG | - | chr7_1:841438-841457 | Msa1003790:intron | 30.0% | |
| AAAAATATTTGTCAGCGGAA+AGG | - | chr7_1:841443-841462 | Msa1003790:intron | 30.0% | |
| !! | ATATTTTCTAGTGGCATTTC+TGG | + | chr7_1:841510-841529 | None:intergenic | 30.0% |
| AGAGTAGTGGTTATCTTATT+TGG | + | chr7_1:841620-841639 | None:intergenic | 30.0% | |
| ! | TCTAAAGTATTTCCTGTTAC+TGG | + | chr7_1:841890-841909 | None:intergenic | 30.0% |
| TTCAAGATAAGGTTGCTAAA+TGG | + | chr7_1:841926-841945 | None:intergenic | 30.0% | |
| TTTATCTTCCTTGAAAGAAG+AGG | - | chr7_1:842078-842097 | Msa1003790:CDS | 30.0% | |
| ! | TGATTTTTCCTCTTCTTTCA+AGG | + | chr7_1:842089-842108 | None:intergenic | 30.0% |
| GCTAAGCATATAATCTCTTT+AGG | - | chr7_1:842115-842134 | Msa1003790:CDS | 30.0% | |
| ATATGCAACTAGAATCTGAT+CGG | + | chr7_1:842225-842244 | None:intergenic | 30.0% | |
| GTTGCATATATAAGATAGCA+AGG | - | chr7_1:842236-842255 | Msa1003790:intron | 30.0% | |
| TGCATATATAAGATAGCAAG+GGG | - | chr7_1:842238-842257 | Msa1003790:intron | 30.0% | |
| !!! | TAGTGTTGCATTTTTTGTTG+GGG | + | chr7_1:842311-842330 | None:intergenic | 30.0% |
| TCATTGACAAAAGTTCAGTA+AGG | + | chr7_1:842336-842355 | None:intergenic | 30.0% | |
| ! | TTTTATCAGTGATGTACACT+TGG | + | chr7_1:842423-842442 | None:intergenic | 30.0% |
| GTATCAATGTTGTCAAATAG+AGG | - | chr7_1:842488-842507 | Msa1003790:intron | 30.0% | |
| CATAAAGTTCTGTCAAATAG+TGG | - | chr7_1:842590-842609 | Msa1003790:intron | 30.0% | |
| GTAGTTCAAAGTGTAATAAG+AGG | + | chr7_1:842862-842881 | None:intergenic | 30.0% | |
| CTTATTACACTTTGAACTAC+TGG | - | chr7_1:842862-842881 | Msa1003790:CDS | 30.0% | |
| !!! | GTTGAGGTTGTTTTTATAAG+AGG | - | chr7_1:842960-842979 | Msa1003790:intron | 30.0% |
| GAAAGTCTCTTTAACATTGA+AGG | + | chr7_1:843059-843078 | None:intergenic | 30.0% | |
| GTTTAGCATATACATAGAGA+TGG | - | chr7_1:843193-843212 | Msa1003790:CDS | 30.0% | |
| !!! | AGAGCTATTTTAATCTTGTG+TGG | - | chr7_1:843284-843303 | Msa1003790:CDS | 30.0% |
| TTAGAATCAATGATTGGTGA+TGG | - | chr7_1:843614-843633 | Msa1003790:CDS | 30.0% | |
| TAGACATGTAGATTTGATGA+GGG | - | chr7_1:843679-843698 | Msa1003790:CDS | 30.0% | |
| CTTTCTAAACAGTATAATGC+TGG | - | chr7_1:843737-843756 | Msa1003790:CDS | 30.0% | |
| CTTCAGTAAAATATCAGGTT+TGG | - | chr7_1:843862-843881 | Msa1003790:CDS | 30.0% | |
| TTATCACAAATAAACGGTGA+TGG | + | chr7_1:843890-843909 | None:intergenic | 30.0% | |
| ! | GTGGACTGTCTAATTAAATA+AGG | - | chr7_1:844111-844130 | Msa1003790:CDS | 30.0% |
| !! | TCTCAACCTATTTTTCACTT+TGG | + | chr7_1:844177-844196 | None:intergenic | 30.0% |
| !! | CAGAACACTTTTGAAGATTA+TGG | - | chr7_1:844343-844362 | Msa1003790:CDS | 30.0% |
| !! | ATGGACTAGTTGATGTATTA+TGG | - | chr7_1:844390-844409 | Msa1003790:CDS | 30.0% |
| TCAAGATCTTCTTTCCATCA+TGG | - | chr7_1:839535-839554 | Msa1003790:CDS | 35.0% | |
| GATCACTTGAATTACCATGA+TGG | + | chr7_1:839552-839571 | None:intergenic | 35.0% | |
| ! | CTCTTTTCACATTAGACACT+TGG | + | chr7_1:839828-839847 | None:intergenic | 35.0% |
| CAAGTGTCTAATGTGAAAAG+AGG | - | chr7_1:839826-839845 | Msa1003790:intron | 35.0% | |
| GAAAAGAGGCAAAGAAAAGA+AGG | - | chr7_1:839840-839859 | Msa1003790:intron | 35.0% | |
| AGAAAAGAAGGAACAATTGG+GGG | - | chr7_1:839852-839871 | Msa1003790:intron | 35.0% | |
| AATGGAAACTAGTGCTTTCA+CGG | + | chr7_1:840064-840083 | None:intergenic | 35.0% | |
| ACCGAAAATCTTCATCCTTT+AGG | + | chr7_1:840110-840129 | None:intergenic | 35.0% | |
| ! | AAAGGATGAAGATTTTCGGT+CGG | - | chr7_1:840110-840129 | Msa1003790:CDS | 35.0% |
| TCAAAGAGGAGAAACAATTG+TGG | + | chr7_1:840143-840162 | None:intergenic | 35.0% | |
| GGATCAAATATACAACACTG+AGG | + | chr7_1:840398-840417 | None:intergenic | 35.0% | |
| AATATTGTTGCCTGAGCTTT+GGG | - | chr7_1:840488-840507 | Msa1003790:CDS | 35.0% | |
| GAAGAAATGGTGTAACAACA+AGG | - | chr7_1:840542-840561 | Msa1003790:CDS | 35.0% | |
| AAATGGTGTAACAACAAGGA+AGG | - | chr7_1:840546-840565 | Msa1003790:CDS | 35.0% | |
| CCGACTTTAATTCTAATGAC+AGG | - | chr7_1:840931-840950 | Msa1003790:intron | 35.0% | |
| AGTTCAACTTCGTAGAATTG+AGG | + | chr7_1:841061-841080 | None:intergenic | 35.0% | |
| !! | AGCTTTGAAAATTGTGAGAG+AGG | - | chr7_1:841097-841116 | Msa1003790:CDS | 35.0% |
| AATTGTGAGAGAGGTTCTTA+TGG | - | chr7_1:841106-841125 | Msa1003790:CDS | 35.0% | |
| AATTCATGAACTGGTACTCT+TGG | + | chr7_1:841211-841230 | None:intergenic | 35.0% | |
| AAGATAACCACTACTCTTGA+TGG | - | chr7_1:841623-841642 | Msa1003790:CDS | 35.0% | |
| TTTCTTACCATCAAGAGTAG+TGG | + | chr7_1:841633-841652 | None:intergenic | 35.0% | |
| ACCTTCCTTCAGATAACAAA+TGG | - | chr7_1:841673-841692 | Msa1003790:CDS | 35.0% | |
| !! | TCCATTTGTTATCTGAAGGA+AGG | + | chr7_1:841677-841696 | None:intergenic | 35.0% |
| ATAAATTCCAGTGGTATGCT+TGG | + | chr7_1:841758-841777 | None:intergenic | 35.0% | |
| AGAGGACAAATAAATTCCAG+TGG | + | chr7_1:841767-841786 | None:intergenic | 35.0% | |
| !! | CTTGATGGCTTTTCTTTCAA+AGG | + | chr7_1:841837-841856 | None:intergenic | 35.0% |
| ! | CTTTGAAAGAAAAGCCATCA+AGG | - | chr7_1:841835-841854 | Msa1003790:CDS | 35.0% |
| ATCAAGGCATGGTTTCAAAA+GGG | - | chr7_1:841851-841870 | Msa1003790:CDS | 35.0% | |
| TTTGAGAGGCAAAATCAAGA+AGG | + | chr7_1:841988-842007 | None:intergenic | 35.0% | |
| TCAAACTGTGGAAAATTCGA+AGG | - | chr7_1:842003-842022 | Msa1003790:CDS | 35.0% | |
| ! | TAAGTTAAAAAAGCGCGATG+AGG | - | chr7_1:842030-842049 | Msa1003790:CDS | 35.0% |
| !!! | GCTATCGTTTTCAAGTTACA+AGG | - | chr7_1:842052-842071 | Msa1003790:CDS | 35.0% |
| GAGGTTTGAACAAGGAAATT+TGG | - | chr7_1:842159-842178 | Msa1003790:CDS | 35.0% | |
| ! | CTGAACTTTTGTCAATGAAG+AGG | - | chr7_1:842338-842357 | Msa1003790:CDS | 35.0% |
| ! | GATGTCACTTGTTTCATAAG+TGG | - | chr7_1:842746-842765 | Msa1003790:CDS | 35.0% |
| AACCTTGTCATCATTTAAGC+TGG | + | chr7_1:843249-843268 | None:intergenic | 35.0% | |
| !! | ATAACCTGCTTGCTTTAAGA+TGG | + | chr7_1:843348-843367 | None:intergenic | 35.0% |
| AAGCAAGCAGGTTATAACAA+TGG | - | chr7_1:843353-843372 | Msa1003790:CDS | 35.0% | |
| AAGAGAACTTACCGATGAAA+TGG | + | chr7_1:843435-843454 | None:intergenic | 35.0% | |
| TCATTAAGTGACTCATGCAA+GGG | + | chr7_1:843509-843528 | None:intergenic | 35.0% | |
| TTCATTAAGTGACTCATGCA+AGG | + | chr7_1:843510-843529 | None:intergenic | 35.0% | |
| GTCACTTAATGAATGTGTCT+AGG | - | chr7_1:843517-843536 | Msa1003790:CDS | 35.0% | |
| GGAAGATGAAGAAGAAGAAA+TGG | - | chr7_1:843568-843587 | Msa1003790:CDS | 35.0% | |
| AGAAATGGATGAAGAGTTCA+TGG | - | chr7_1:843583-843602 | Msa1003790:CDS | 35.0% | |
| CTAGACATGTAGATTTGATG+AGG | - | chr7_1:843678-843697 | Msa1003790:CDS | 35.0% | |
| GTGGTAGTAAAGTAGTAGTT+AGG | - | chr7_1:844089-844108 | Msa1003790:CDS | 35.0% | |
| GTAGTAAAGTAGTAGTTAGG+TGG | - | chr7_1:844092-844111 | Msa1003790:CDS | 35.0% | |
| ATCAACTAGTCCATGAAGAA+GGG | + | chr7_1:844384-844403 | None:intergenic | 35.0% | |
| !!! | AACTGCATGCCATTTTGTAT+AGG | - | chr7_1:844423-844442 | Msa1003790:CDS | 35.0% |
| !!! | ACTGCATGCCATTTTGTATA+GGG | - | chr7_1:844424-844443 | Msa1003790:CDS | 35.0% |
| CAGATTCTCCCTATACAAAA+TGG | + | chr7_1:844435-844454 | None:intergenic | 35.0% | |
| AAGTGATCCTCTTCACTCTT+TGG | - | chr7_1:839564-839583 | Msa1003790:CDS | 40.0% | |
| CTATCTTCCAAAGAGTGAAG+AGG | + | chr7_1:839574-839593 | None:intergenic | 40.0% | |
| ! | GCACTAGTTTCCATTCTGAA+TGG | - | chr7_1:840069-840088 | Msa1003790:CDS | 40.0% |
| !! | AGAACACAATTCTGAGACCA+AGG | - | chr7_1:840182-840201 | Msa1003790:CDS | 40.0% |
| CTCAAGACTTGTAATCACCT+TGG | + | chr7_1:840202-840221 | None:intergenic | 40.0% | |
| CATAGAAAAAACTGCTGCTG+AGG | - | chr7_1:840236-840255 | Msa1003790:CDS | 40.0% | |
| ! | CTCAAGTACGATTTTACGTG+CGG | - | chr7_1:840333-840352 | Msa1003790:CDS | 40.0% |
| ! | TCAAGTACGATTTTACGTGC+GGG | - | chr7_1:840334-840353 | Msa1003790:CDS | 40.0% |
| CAATATTGTTGCCTGAGCTT+TGG | - | chr7_1:840487-840506 | Msa1003790:CDS | 40.0% | |
| ! | TACAAAGATTGGCTCAGTGA+AGG | - | chr7_1:840672-840691 | Msa1003790:CDS | 40.0% |
| !! | CGACTCGTAATGGATAATGA+TGG | + | chr7_1:840732-840751 | None:intergenic | 40.0% |
| ATTATCCATTACGAGTCGAC+AGG | - | chr7_1:840734-840753 | Msa1003790:intron | 40.0% | |
| !! | TAATACCTGTCGACTCGTAA+TGG | + | chr7_1:840742-840761 | None:intergenic | 40.0% |
| TAATGACAGGGAAGTTCACT+TGG | - | chr7_1:840944-840963 | Msa1003790:intron | 40.0% | |
| CTACGAAGTTGAACTTGATG+AGG | - | chr7_1:841066-841085 | Msa1003790:CDS | 40.0% | |
| GAGAGGTTCTTATGGTTCAA+CGG | - | chr7_1:841114-841133 | Msa1003790:CDS | 40.0% | |
| ! | TTTTGACAGTGTGGAATGTG+AGG | + | chr7_1:841427-841446 | None:intergenic | 40.0% |
| CTGCAGAAGAATGGAAAGAT+AGG | - | chr7_1:841480-841499 | Msa1003790:intron | 40.0% | |
| ATATTCTCCAAGCATACCAC+TGG | - | chr7_1:841748-841767 | Msa1003790:CDS | 40.0% | |
| AAAGGTTTGACCTGACTCTA+AGG | + | chr7_1:841819-841838 | None:intergenic | 40.0% | |
| AAAGAAAAGCCATCAAGGCA+TGG | - | chr7_1:841840-841859 | Msa1003790:CDS | 40.0% | |
| !!! | CTTTTGAAACCATGCCTTGA+TGG | + | chr7_1:841852-841871 | None:intergenic | 40.0% |
| CATCAAGGCATGGTTTCAAA+AGG | - | chr7_1:841850-841869 | Msa1003790:CDS | 40.0% | |
| AACAGAACATGTCCAGTAAC+AGG | - | chr7_1:841875-841894 | Msa1003790:CDS | 40.0% | |
| CGATCAAACGCTTCAAGATA+AGG | + | chr7_1:841937-841956 | None:intergenic | 40.0% | |
| ! | TGAAGCGTTTGATCGATAAC+TGG | - | chr7_1:841942-841961 | Msa1003790:CDS | 40.0% |
| ! | TGATTTTGCCTCTCAAACTG+TGG | - | chr7_1:841991-842010 | Msa1003790:CDS | 40.0% |
| ! | CGAATTTTCCACAGTTTGAG+AGG | + | chr7_1:842002-842021 | None:intergenic | 40.0% |
| TTCTTTCGTTTCTCTGTAGG+AGG | - | chr7_1:842140-842159 | Msa1003790:CDS | 40.0% | |
| TCTTGAGCTTCTTCACAGTA+AGG | - | chr7_1:842279-842298 | Msa1003790:CDS | 40.0% | |
| CACTTGTTTCATAAGTGGCT+TGG | - | chr7_1:842751-842770 | Msa1003790:CDS | 40.0% | |
| ! | TTGTTTCATAAGTGGCTTGG+TGG | - | chr7_1:842754-842773 | Msa1003790:CDS | 40.0% |
| !! | TGTTTCATAAGTGGCTTGGT+GGG | - | chr7_1:842755-842774 | Msa1003790:CDS | 40.0% |
| TAATAAGAGGACAGCGATGA+GGG | + | chr7_1:842849-842868 | None:intergenic | 40.0% | |
| AACAACCTCAACATCATGCA+AGG | + | chr7_1:842952-842971 | None:intergenic | 40.0% | |
| CTAGAACATATTTGCACTGC+AGG | - | chr7_1:843154-843173 | Msa1003790:intron | 40.0% | |
| TGCCAGCTTAAATGATGACA+AGG | - | chr7_1:843244-843263 | Msa1003790:CDS | 40.0% | |
| ! | TGTGGACATTTTTCTTCCAC+TGG | - | chr7_1:843302-843321 | Msa1003790:CDS | 40.0% |
| ACTACCATCTTAAAGCAAGC+AGG | - | chr7_1:843341-843360 | Msa1003790:CDS | 40.0% | |
| CTGAGAGATGATAGCTAAGA+AGG | + | chr7_1:843777-843796 | None:intergenic | 40.0% | |
| GCTCAAGTTCTTCATTCTCA+AGG | + | chr7_1:843811-843830 | None:intergenic | 40.0% | |
| GACACATATAATGAGACGGA+GGG | + | chr7_1:843960-843979 | None:intergenic | 40.0% | |
| TGACACATATAATGAGACGG+AGG | + | chr7_1:843961-843980 | None:intergenic | 40.0% | |
| ATTGGAGTGGTTGAAAGTAG+TGG | - | chr7_1:844070-844089 | Msa1003790:CDS | 40.0% | |
| GGTTGAGACAATGCAATGAT+CGG | - | chr7_1:844189-844208 | Msa1003790:CDS | 40.0% | |
| TCAACTAGTCCATGAAGAAG+GGG | + | chr7_1:844383-844402 | None:intergenic | 40.0% | |
| CATCAACTAGTCCATGAAGA+AGG | + | chr7_1:844385-844404 | None:intergenic | 40.0% | |
| ! | CAAGCAGCAGAAAAGTGCAA+AGG | - | chr7_1:839512-839531 | Msa1003790:CDS | 45.0% |
| ATTGGGGGAAAAGCCATTGA+AGG | - | chr7_1:839867-839886 | Msa1003790:intron | 45.0% | |
| ! | GTTTTGCGACTCTCCTTTTC+AGG | - | chr7_1:840458-840477 | Msa1003790:intron | 45.0% |
| AATATTGTCCGCGCCTGAAA+AGG | + | chr7_1:840474-840493 | None:intergenic | 45.0% | |
| GGGTTCTTTCGTTTCTCTGT+AGG | - | chr7_1:842137-842156 | Msa1003790:CDS | 45.0% | |
| CTCTGTAGGAGGTTTGAACA+AGG | - | chr7_1:842151-842170 | Msa1003790:CDS | 45.0% | |
| TTACGGATCGCAGAGTATAG+CGG | + | chr7_1:842651-842670 | None:intergenic | 45.0% | |
| AATAAGAGGACAGCGATGAG+GGG | + | chr7_1:842848-842867 | None:intergenic | 45.0% | |
| GTAATAAGAGGACAGCGATG+AGG | + | chr7_1:842850-842869 | None:intergenic | 45.0% | |
| !! | CTTAGCCTTGCATGATGTTG+AGG | - | chr7_1:842944-842963 | Msa1003790:CDS | 45.0% |
| !! | ATCTCCTAGCCTTGATGAAG+AGG | - | chr7_1:843391-843410 | Msa1003790:CDS | 45.0% |
| TGATCCTCTTCATCAAGGCT+AGG | + | chr7_1:843398-843417 | None:intergenic | 45.0% | |
| GCCTTGATGAAGAGGATCAA+CGG | - | chr7_1:843399-843418 | Msa1003790:CDS | 45.0% | |
| ACCGTTGATCCTCTTCATCA+AGG | + | chr7_1:843403-843422 | None:intergenic | 45.0% | |
| GAGATGATAGCTAAGAAGGC+AGG | + | chr7_1:843773-843792 | None:intergenic | 45.0% | |
| GCTATCATCTCTCAGCTGAA+AGG | - | chr7_1:843782-843801 | Msa1003790:CDS | 45.0% | |
| GATATTGCTCCCCTTCTTCA+TGG | - | chr7_1:844371-844390 | Msa1003790:CDS | 45.0% | |
| ! | TTTGGAGCAGCTTCTTGCAG+AGG | - | chr7_1:839477-839496 | Msa1003790:CDS | 50.0% |
| AGCAGCTTCTTGCAGAGGAA+GGG | - | chr7_1:839482-839501 | Msa1003790:CDS | 50.0% | |
| AATAGACGCTCCCAAAGCTC+AGG | + | chr7_1:840501-840520 | None:intergenic | 50.0% | |
| CTGTGGTGAGAATGGTTCGT+TGG | + | chr7_1:840993-841012 | None:intergenic | 50.0% | |
| CAACGAACCATTCTCACCAC+AGG | - | chr7_1:840991-841010 | Msa1003790:intron | 50.0% | |
| ACCATTCTCACCACAGGCAA+TGG | - | chr7_1:840997-841016 | Msa1003790:intron | 50.0% | |
| ACCATTGCCTGTGGTGAGAA+TGG | + | chr7_1:841001-841020 | None:intergenic | 50.0% | |
| TTCTTGCTGACCATTGCCTG+TGG | + | chr7_1:841010-841029 | None:intergenic | 50.0% | |
| GTCAGCGGAAAGGAACATCA+AGG | - | chr7_1:841453-841472 | Msa1003790:intron | 50.0% | |
| CAAGGACAGCTGCAGAAGAA+TGG | - | chr7_1:841471-841490 | Msa1003790:intron | 50.0% | |
| GAACCAGTCACCTTAGAGTC+AGG | - | chr7_1:841806-841825 | Msa1003790:CDS | 50.0% | |
| !! | TGACCTGACTCTAAGGTGAC+TGG | + | chr7_1:841812-841831 | None:intergenic | 50.0% |
| ATAACGGCGCTATAGCGTAG+TGG | - | chr7_1:842526-842545 | Msa1003790:intron | 50.0% | |
| ! | GCGATGAGGGGCTTTTCAAT+TGG | + | chr7_1:842836-842855 | None:intergenic | 50.0% |
| GAGCAGCTTCTTGCAGAGGA+AGG | - | chr7_1:839481-839500 | Msa1003790:CDS | 55.0% | |
| GGCTGTGAATGCCATTGCAG+AGG | - | chr7_1:843214-843233 | Msa1003790:CDS | 55.0% | |
| GGCATCAAGTGCCTCTGCAA+TGG | + | chr7_1:843228-843247 | None:intergenic | 55.0% | |
| !! | GCGACTCTCCTTTTCAGGCG+CGG | - | chr7_1:840463-840482 | Msa1003790:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 839466 | 844457 | 839466 | ID=Msa1003790;Name=Msa1003790 |
| chr7_1 | mRNA | 839466 | 844457 | 839466 | ID=Msa1003790-mRNA-1;Parent=Msa1003790;Name=Msa1003790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.14|0|1|1|1|8|0|1109 |
| chr7_1 | exon | 843168 | 844457 | 843168 | ID=Msa1003790-mRNA-1:exon:290;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 842683 | 842970 | 842683 | ID=Msa1003790-mRNA-1:exon:289;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 842279 | 842465 | 842279 | ID=Msa1003790-mRNA-1:exon:288;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 841564 | 842179 | 841564 | ID=Msa1003790-mRNA-1:exon:287;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 841040 | 841184 | 841040 | ID=Msa1003790-mRNA-1:exon:286;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 840481 | 840747 | 840481 | ID=Msa1003790-mRNA-1:exon:285;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 839937 | 840354 | 839937 | ID=Msa1003790-mRNA-1:exon:284;Parent=Msa1003790-mRNA-1 |
| chr7_1 | exon | 839466 | 839584 | 839466 | ID=Msa1003790-mRNA-1:exon:283;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 843168 | 844457 | 843168 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 842683 | 842970 | 842683 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 842279 | 842465 | 842279 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 841564 | 842179 | 841564 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 841040 | 841184 | 841040 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 840481 | 840747 | 840481 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 839937 | 840354 | 839937 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| chr7_1 | CDS | 839466 | 839584 | 839466 | ID=Msa1003790-mRNA-1:cds;Parent=Msa1003790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
