AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485330 MtrunA17_Chr4g0063751 97.235 217 3 1 1 217 1 214 2.77e-156 431
Msa0485330 MtrunA17_Chr2g0333011 64.737 190 50 3 1 190 1 173 5.41e-78 231
Msa0485330 MtrunA17_Chr4g0003421 60.185 216 55 6 1 190 34 244 2.78e-75 227
Msa0485330 MtrunA17_Chr1g0149331 59.000 200 69 3 1 190 1 197 3.82e-65 199
Msa0485330 MtrunA17_Chr3g0137831 57.767 206 78 4 3 200 4 208 1.28e-60 189
Msa0485330 MtrunA17_Chr4g0002631 64.211 95 23 3 5 99 6 89 8.90e-34 119
Msa0485330 MtrunA17_Chr3g0137174 77.966 59 13 0 5 63 6 64 4.70e-30 110
Msa0485330 MtrunA17_Chr5g0432821 63.333 60 22 0 7 66 124 183 8.35e-23 93.2
Msa0485330 MtrunA17_Chr8g0375031 67.213 61 20 0 5 65 123 183 8.50e-23 92.0
Msa0485330 MtrunA17_Chr4g0044881 49.462 93 35 1 3 95 110 190 1.15e-21 89.4
Msa0485330 MtrunA17_Chr8g0383591 64.407 59 21 0 5 63 143 201 1.31e-21 90.5
Msa0485330 MtrunA17_Chr1g0196781 62.903 62 23 0 2 63 147 208 1.53e-21 90.5
Msa0485330 MtrunA17_Chr3g0099871 59.091 66 27 0 1 66 21 86 1.95e-21 88.6
Msa0485330 MtrunA17_Chr4g0044901 66.102 59 20 0 7 65 96 154 1.11e-20 86.7
Msa0485330 MtrunA17_Chr4g0044871 67.241 58 19 0 7 64 96 153 1.17e-20 86.7
Msa0485330 MtrunA17_Chr4g0044911 67.241 58 19 0 7 64 96 153 1.39e-20 86.3
Msa0485330 MtrunA17_Chr2g0316931 47.009 117 41 4 6 121 30 126 1.41e-20 85.9
Msa0485330 MtrunA17_Chr3g0126321 67.241 58 19 0 5 62 111 168 1.71e-20 88.2
Msa0485330 MtrunA17_Chr3g0115631 63.333 60 22 0 4 63 147 206 1.72e-20 87.8
Msa0485330 MtrunA17_Chr5g0425561 63.333 60 22 0 4 63 170 229 2.29e-20 87.8
Msa0485330 MtrunA17_Chr8g0382491 61.667 60 23 0 4 63 110 169 2.42e-20 86.7
Msa0485330 MtrunA17_Chr2g0324131 61.667 60 23 0 4 63 215 274 3.24e-20 87.8
Msa0485330 MtrunA17_Chr2g0282651 63.492 63 23 0 2 64 65 127 3.62e-20 85.5
Msa0485330 MtrunA17_Chr7g0221471 63.158 57 21 0 7 63 51 107 5.53e-20 83.6
Msa0485330 MtrunA17_Chr5g0438831 60.000 65 26 0 2 66 41 105 6.22e-20 85.5
Msa0485330 MtrunA17_Chr5g0396911 62.295 61 23 0 2 62 107 167 7.04e-20 85.9
Msa0485330 MtrunA17_Chr6g0453661 62.500 64 23 1 5 67 36 99 8.66e-20 86.7
Msa0485330 MtrunA17_Chr7g0221501 63.158 57 21 0 7 63 51 107 9.36e-20 82.8
Msa0485330 MtrunA17_Chr8g0387801 61.290 62 24 0 1 62 101 162 1.37e-19 85.1
Msa0485330 MtrunA17_Chr2g0334031 49.398 83 41 1 6 88 116 197 2.81e-19 84.7
Msa0485330 MtrunA17_Chr2g0295421 64.407 59 21 0 7 65 96 154 3.44e-19 83.2
Msa0485330 MtrunA17_Chr7g0217991 48.936 94 39 2 5 98 40 124 3.50e-19 85.1
Msa0485330 MtrunA17_Chr7g0253424 64.407 59 21 0 4 62 36 94 4.99e-19 82.8
Msa0485330 MtrunA17_Chr4g0062551 57.812 64 27 0 3 66 49 112 7.02e-19 79.7
Msa0485330 MtrunA17_Chr5g0438801 56.923 65 28 0 2 66 46 110 1.04e-18 82.4
Msa0485330 MtrunA17_Chr1g0195151 63.158 57 21 0 7 63 77 133 1.19e-18 82.4
Msa0485330 MtrunA17_Chr5g0437671 63.793 58 21 0 6 63 84 141 1.36e-18 83.2
Msa0485330 MtrunA17_Chr4g0062161 57.812 64 27 0 3 66 49 112 1.78e-18 80.1
Msa0485330 MtrunA17_Chr2g0282621 45.918 98 47 1 7 98 15 112 2.26e-18 79.0
Msa0485330 MtrunA17_Chr4g0017851 61.404 57 22 0 7 63 118 174 2.58e-18 81.6
Msa0485330 MtrunA17_Chr7g0257911 58.065 62 26 0 6 67 30 91 2.58e-18 81.3
Msa0485330 MtrunA17_Chr2g0286161 55.882 68 28 1 6 71 49 116 2.72e-18 81.3
Msa0485330 MtrunA17_Chr7g0232261 61.404 57 22 0 7 63 61 117 2.73e-18 80.1
Msa0485330 MtrunA17_Chr4g0066931 58.065 62 26 0 6 67 52 113 3.06e-18 81.6
Msa0485330 MtrunA17_Chr6g0486701 61.404 57 22 0 7 63 44 100 3.76e-18 79.7
Msa0485330 MtrunA17_Chr8g0344961 53.425 73 33 1 6 78 123 194 3.86e-18 81.6
Msa0485330 MtrunA17_Chr4g0055761 54.545 77 33 2 2 76 140 216 3.86e-18 80.5
Msa0485330 MtrunA17_Chr2g0323171 63.158 57 21 0 7 63 65 121 4.23e-18 78.6
Msa0485330 MtrunA17_Chr8g0378811 51.316 76 36 1 1 75 49 124 6.69e-18 79.7
Msa0485330 MtrunA17_Chr8g0340311 59.649 57 23 0 7 63 47 103 7.62e-18 78.6
Msa0485330 MtrunA17_Chr3g0140161 45.455 99 41 3 7 92 43 141 7.74e-18 78.2
Msa0485330 MtrunA17_Chr5g0437371 59.649 57 23 0 6 62 65 121 7.87e-18 80.5
Msa0485330 MtrunA17_Chr8g0390091 61.404 57 22 0 7 63 37 93 7.89e-18 79.0
Msa0485330 MtrunA17_Chr1g0150631 53.226 62 29 0 4 65 35 96 9.36e-18 78.6
Msa0485330 MtrunA17_Chr1g0150691 53.226 62 29 0 4 65 19 80 1.29e-17 78.2
Msa0485330 MtrunA17_Chr8g0367911 56.250 64 28 0 6 69 43 106 1.29e-17 79.3
Msa0485330 MtrunA17_Chr1g0158971 60.345 58 23 0 5 62 113 170 1.37e-17 80.1
Msa0485330 MtrunA17_Chr7g0252381 56.923 65 28 0 6 70 41 105 1.46e-17 79.0
Msa0485330 MtrunA17_Chr4g0055951 59.649 57 23 0 7 63 74 130 1.59e-17 78.6
Msa0485330 MtrunA17_Chr7g0275841 56.140 57 25 0 7 63 28 84 1.70e-17 76.6
Msa0485330 MtrunA17_Chr1g0150671 54.098 61 28 0 5 65 44 104 2.61e-17 78.6
Msa0485330 MtrunA17_Chr8g0334801 53.846 65 28 1 7 69 52 116 2.65e-17 77.0
Msa0485330 MtrunA17_Chr7g0265851 59.649 57 23 0 7 63 24 80 2.84e-17 77.0
Msa0485330 MtrunA17_Chr5g0412641 48.235 85 42 1 6 90 45 127 3.12e-17 79.0
Msa0485330 MtrunA17_Chr2g0301191 53.333 60 28 0 4 63 16 75 3.34e-17 77.0
Msa0485330 MtrunA17_Chr2g0331231 57.895 57 24 0 7 63 41 97 3.52e-17 76.6
Msa0485330 MtrunA17_Chr5g0399441 59.649 57 23 0 7 63 28 84 3.94e-17 75.9
Msa0485330 MtrunA17_Chr8g0346741 47.368 76 38 1 7 80 39 114 4.70e-17 75.9
Msa0485330 MtrunA17_Chr1g0150661 52.459 61 29 0 5 65 33 93 5.06e-17 76.6
Msa0485330 MtrunA17_Chr4g0023411 59.649 57 23 0 7 63 65 121 5.70e-17 75.9
Msa0485330 MtrunA17_Chr1g0170531 58.065 62 25 1 4 64 86 147 8.27e-17 76.3
Msa0485330 MtrunA17_Chr4g0055801 57.812 64 26 1 2 64 149 212 1.13e-16 77.0
Msa0485330 MtrunA17_Chr8g0350701 51.515 66 32 0 5 70 25 90 1.17e-16 77.0
Msa0485330 MtrunA17_Chr6g0461271 45.055 91 44 2 6 91 32 121 1.21e-16 77.0
Msa0485330 MtrunA17_Chr3g0136551 53.448 58 27 0 5 62 63 120 1.25e-16 76.3
Msa0485330 MtrunA17_Chr3g0134161 50.847 59 29 0 5 63 43 101 1.26e-16 74.3
Msa0485330 MtrunA17_Chr1g0184081 61.017 59 22 1 6 63 20 78 1.33e-16 73.6
Msa0485330 MtrunA17_Chr4g0046161 50.000 70 34 1 2 70 52 121 1.63e-16 72.8
Msa0485330 MtrunA17_Chr4g0042761 51.471 68 33 0 5 72 46 113 1.70e-16 76.6
Msa0485330 MtrunA17_Chr2g0301171 51.667 60 29 0 4 63 16 75 1.78e-16 74.7
Msa0485330 MtrunA17_Chr1g0186731 59.322 59 23 1 6 63 20 78 1.87e-16 73.2
Msa0485330 MtrunA17_Chr7g0250731 58.333 60 24 1 5 63 59 118 3.10e-16 74.3
Msa0485330 MtrunA17_Chr2g0283171 55.556 63 27 1 2 63 58 120 3.44e-16 72.8
Msa0485330 MtrunA17_Chr1g0200931 51.429 70 31 2 3 69 19 88 3.78e-16 72.4
Msa0485330 MtrunA17_Chr1g0183981 36.364 132 59 4 5 132 73 183 4.11e-16 73.9
Msa0485330 MtrunA17_Chr7g0250721 58.333 60 24 1 5 63 59 118 5.01e-16 73.6
Msa0485330 MtrunA17_Chr1g0184061 50.725 69 33 1 2 69 72 140 5.19e-16 73.9
Msa0485330 MtrunA17_Chr4g0055781 53.846 65 29 1 1 64 96 160 5.37e-16 74.3
Msa0485330 MtrunA17_Chr1g0153151 50.847 59 29 0 5 63 42 100 6.58e-16 72.8
Msa0485330 MtrunA17_Chr8g0335321 56.667 60 25 1 5 63 94 153 7.23e-16 73.2
Msa0485330 MtrunA17_Chr4g0026881 62.069 58 21 1 7 63 97 154 9.40e-16 73.6
Msa0485330 MtrunA17_Chr2g0301181 40.964 83 49 0 4 86 16 98 1.19e-15 73.2
Msa0485330 MtrunA17_Chr7g0261151 57.812 64 26 1 6 68 19 82 1.29e-15 70.9
Msa0485330 MtrunA17_Chr1g0184031 50.000 70 34 1 1 69 78 147 1.39e-15 72.8
Msa0485330 MtrunA17_Chr5g0401871 47.458 59 31 0 5 63 23 81 1.49e-15 71.6
Msa0485330 MtrunA17_Chr8g0335331 60.000 60 19 2 7 63 125 182 1.59e-15 72.0
Msa0485330 MtrunA17_Chr1g0196871 49.296 71 34 2 4 73 13 82 2.29e-15 69.3
Msa0485330 MtrunA17_Chr1g0189941 50.820 61 30 0 7 67 24 84 2.32e-15 70.9
Msa0485330 MtrunA17_Chr2g0283181 57.377 61 25 1 5 64 147 207 2.55e-15 73.2
Msa0485330 MtrunA17_Chr7g0250711 56.667 60 25 1 5 63 58 117 2.61e-15 71.6
Msa0485330 MtrunA17_Chr7g0243431 55.556 63 21 1 7 62 78 140 2.93e-15 73.9
Msa0485330 MtrunA17_Chr8g0335311 55.000 60 26 1 5 63 94 153 3.05e-15 71.2
Msa0485330 MtrunA17_Chr1g0184011 50.000 70 34 1 1 69 78 147 3.21e-15 71.6
Msa0485330 MtrunA17_Chr6g0473981 58.929 56 23 0 7 62 54 109 4.96e-15 71.6
Msa0485330 MtrunA17_Chr1g0203861 58.929 56 23 0 7 62 44 99 5.00e-15 70.9
Msa0485330 MtrunA17_Chr1g0186671 59.322 59 23 1 6 63 18 76 5.08e-15 69.3
Msa0485330 MtrunA17_Chr7g0261101 61.017 59 22 1 6 63 19 77 5.74e-15 69.3
Msa0485330 MtrunA17_Chr6g0473741 57.143 56 24 0 7 62 66 121 9.64e-15 70.5
Msa0485330 MtrunA17_Chr6g0473931 58.929 56 23 0 7 62 33 88 1.24e-14 69.7
Msa0485330 MtrunA17_Chr2g0297331 57.627 59 24 1 6 63 13 71 1.60e-14 67.8
Msa0485330 MtrunA17_Chr3g0136541 45.333 75 38 2 9 82 42 114 1.67e-14 70.1
Msa0485330 MtrunA17_Chr6g0473961 57.143 56 24 0 7 62 54 109 2.29e-14 69.3
Msa0485330 MtrunA17_Chr1g0184071 48.529 68 34 1 3 69 65 132 3.19e-14 68.2
Msa0485330 MtrunA17_Chr6g0473941 57.143 56 24 0 7 62 33 88 3.34e-14 68.6
Msa0485330 MtrunA17_Chr5g0438841 52.542 59 28 0 6 64 15 73 4.79e-14 67.4
Msa0485330 MtrunA17_Chr6g0473971 55.357 56 25 0 7 62 54 109 4.95e-14 68.9
Msa0485330 MtrunA17_Chr3g0129421 53.571 84 35 1 5 84 168 251 5.36e-14 69.7
Msa0485330 MtrunA17_Chr6g0474001 55.357 56 25 0 7 62 54 109 6.17e-14 68.9
Msa0485330 MtrunA17_Chr5g0396191 63.158 57 21 0 7 63 11 67 9.31e-14 67.0
Msa0485330 MtrunA17_Chr6g0473881 55.357 56 25 0 7 62 110 165 9.82e-14 68.9
Msa0485330 MtrunA17_Chr6g0473781 55.357 56 25 0 7 62 57 112 1.28e-13 67.4
Msa0485330 MtrunA17_Chr6g0473861 55.357 56 25 0 7 62 63 118 1.39e-13 68.2
Msa0485330 MtrunA17_Chr1g0186681 56.667 60 24 1 6 63 18 77 1.44e-13 65.1
Msa0485330 MtrunA17_Chr4g0026931 58.621 58 23 1 7 63 131 188 1.78e-13 67.8
Msa0485330 MtrunA17_Chr1g0146191 63.158 57 21 0 7 63 47 103 1.89e-13 67.4
Msa0485330 MtrunA17_Chr5g0396301 51.613 62 28 1 4 63 15 76 2.15e-13 65.5
Msa0485330 MtrunA17_Chr1g0205961 32.540 126 72 3 4 119 112 234 2.80e-13 67.8
Msa0485330 MtrunA17_Chr7g0225131 49.206 63 29 1 3 65 25 84 3.25e-13 63.2
Msa0485330 MtrunA17_Chr6g0486711 63.158 57 21 0 7 63 49 105 7.54e-13 65.5
Msa0485330 MtrunA17_Chr1g0155751 58.065 62 26 0 7 68 39 100 1.84e-12 64.7
Msa0485330 MtrunA17_Chr3g0131601 61.290 62 24 0 2 63 71 132 2.21e-12 64.3
Msa0485330 MtrunA17_Chr4g0057241 50.877 57 27 1 7 63 15 70 3.64e-12 62.4
Msa0485330 MtrunA17_Chr3g0114761 55.385 65 27 1 5 67 23 87 6.50e-12 62.8
Msa0485330 MtrunA17_Chr8g0345531 57.143 42 18 0 6 47 115 156 6.91e-12 63.9
Msa0485330 MtrunA17_Chr5g0396171 49.091 55 28 0 9 63 26 80 1.65e-11 58.9
Msa0485330 MtrunA17_Chr6g0473771 48.214 56 29 0 7 62 43 98 2.34e-11 58.9
Msa0485330 MtrunA17_Chr4g0030191 46.053 76 40 1 4 79 221 295 2.45e-11 62.4
Msa0485330 MtrunA17_Chr1g0209891 57.143 42 18 0 4 45 51 92 5.64e-11 60.8
Msa0485330 MtrunA17_Chr8g0345551 56.098 41 18 0 7 47 117 157 5.77e-11 61.2
Msa0485330 MtrunA17_Chr5g0424051 52.857 70 32 1 5 73 94 163 6.60e-11 60.5
Msa0485330 MtrunA17_Chr1g0170471 50.000 60 28 2 15 73 91 149 7.31e-11 58.9
Msa0485330 MtrunA17_Chr5g0398081 46.774 62 27 1 7 62 49 110 9.25e-11 59.3
Msa0485330 MtrunA17_Chr5g0396741 59.091 66 27 0 3 68 113 178 9.37e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485330 AT1G15360.1 62.000 200 63 4 1 190 1 197 3.00e-75 226
Msa0485330 AT1G15360.2 62.000 200 63 4 1 190 1 197 3.00e-75 226
Msa0485330 AT5G25390.2 56.633 196 69 4 1 195 1 181 8.56e-70 211
Msa0485330 AT5G25390.1 55.102 196 69 5 1 195 1 178 2.15e-65 200
Msa0485330 AT5G11190.1 58.639 191 74 3 1 190 1 187 1.64e-61 191
Msa0485330 AT5G25190.1 63.158 95 24 2 5 99 6 89 6.42e-34 120
Msa0485330 AT2G47520.1 52.809 89 35 1 7 88 50 138 2.63e-23 92.4
Msa0485330 AT5G53290.1 67.742 62 20 0 3 64 121 182 5.81e-22 92.4
Msa0485330 AT2G22200.1 68.421 57 18 0 7 63 71 127 1.09e-21 90.1
Msa0485330 AT4G27950.1 61.538 65 25 0 5 69 116 180 1.24e-21 91.3
Msa0485330 AT4G11140.1 55.000 80 28 1 5 84 85 156 2.45e-21 89.7
Msa0485330 AT1G36060.1 50.549 91 43 1 4 92 140 230 2.68e-21 90.1
Msa0485330 AT4G39780.1 57.143 70 30 0 1 70 87 156 2.72e-21 89.4
Msa0485330 AT4G13620.1 65.000 60 21 0 4 63 229 288 3.31e-21 90.9
Msa0485330 AT4G23750.2 63.492 63 23 0 5 67 120 182 5.55e-21 89.7
Msa0485330 AT4G23750.1 63.492 63 23 0 5 67 120 182 5.55e-21 89.7
Msa0485330 AT5G65130.1 48.544 103 43 3 5 107 109 201 5.70e-21 88.6
Msa0485330 AT5G65130.2 48.544 103 43 3 5 107 111 203 5.76e-21 88.6
Msa0485330 AT1G22190.1 63.333 60 22 0 4 63 80 139 6.00e-21 88.2
Msa0485330 AT1G03800.1 61.017 59 23 0 6 64 52 110 9.21e-21 87.4
Msa0485330 AT3G20310.1 51.250 80 39 0 2 81 22 101 1.33e-20 87.0
Msa0485330 AT1G78080.1 63.333 60 22 0 4 63 149 208 2.49e-20 87.8
Msa0485330 AT1G28370.1 63.793 58 21 0 6 63 19 76 2.63e-20 84.3
Msa0485330 AT5G13330.1 64.407 59 21 0 5 63 37 95 2.80e-20 85.5
Msa0485330 AT5G44210.1 62.500 64 24 0 1 64 27 90 3.54e-20 84.7
Msa0485330 AT2G20880.1 61.667 60 23 0 4 63 184 243 3.54e-20 87.4
Msa0485330 AT3G61630.1 55.128 78 33 1 2 77 100 177 4.37e-20 87.0
Msa0485330 AT2G35700.1 42.991 107 52 2 7 108 45 147 4.41e-20 84.3
Msa0485330 AT1G50640.1 63.492 63 23 0 2 64 23 85 4.50e-20 85.1
Msa0485330 AT3G15210.1 54.762 84 37 1 6 89 24 106 6.19e-20 84.7
Msa0485330 AT1G28370.2 63.793 58 21 0 6 63 57 114 8.27e-20 84.0
Msa0485330 AT5G61890.1 48.276 87 32 1 2 75 85 171 1.13e-19 84.7
Msa0485330 AT4G28140.1 58.065 62 26 0 2 63 138 199 1.21e-19 85.5
Msa0485330 AT2G33710.1 62.712 59 22 0 5 63 68 126 1.42e-19 83.6
Msa0485330 AT2G33710.2 62.712 59 22 0 5 63 68 126 1.45e-19 84.0
Msa0485330 AT1G71450.1 63.158 57 21 0 7 63 24 80 1.69e-19 82.8
Msa0485330 AT4G16750.1 54.054 74 29 1 7 75 40 113 2.29e-19 82.4
Msa0485330 AT5G47220.1 56.410 78 32 2 2 77 112 189 2.89e-19 83.6
Msa0485330 AT1G72360.1 45.977 87 47 0 3 89 21 107 5.55e-19 82.0
Msa0485330 AT3G11020.1 64.912 57 20 0 7 63 78 134 5.64e-19 84.0
Msa0485330 AT1G22985.1 65.574 61 18 1 5 62 73 133 6.38e-19 80.5
Msa0485330 AT1G72360.3 45.977 87 47 0 3 89 70 156 9.70e-19 82.4
Msa0485330 AT1G72360.2 45.977 87 47 0 3 89 72 158 1.05e-18 82.4
Msa0485330 AT2G46310.1 63.158 57 21 0 6 62 98 154 1.28e-18 82.4
Msa0485330 AT5G19790.1 66.667 57 19 0 6 62 21 77 1.73e-18 81.6
Msa0485330 AT4G31060.1 39.423 104 58 1 5 108 25 123 1.81e-18 80.1
Msa0485330 AT1G19210.1 56.897 58 25 0 6 63 11 68 2.05e-18 79.7
Msa0485330 AT3G57600.1 57.377 61 26 0 6 66 27 87 2.24e-18 81.6
Msa0485330 AT3G16280.1 58.065 62 26 0 2 63 56 117 3.06e-18 80.5
Msa0485330 AT5G05410.2 60.317 63 25 0 7 69 79 141 3.10e-18 81.6
Msa0485330 AT1G28160.1 43.478 92 50 1 2 93 34 123 3.73e-18 80.5
Msa0485330 AT5G05410.1 60.317 63 25 0 7 69 79 141 3.81e-18 81.6
Msa0485330 AT1G21910.1 55.738 61 27 0 7 67 50 110 4.13e-18 80.1
Msa0485330 AT3G16280.2 58.065 62 26 0 2 63 74 135 5.33e-18 80.1
Msa0485330 AT5G18560.1 53.333 75 32 1 6 80 54 125 5.90e-18 81.3
Msa0485330 AT3G23230.1 54.930 71 31 1 6 75 19 89 6.94e-18 77.4
Msa0485330 AT1G01250.1 57.895 57 24 0 7 63 45 101 8.48e-18 78.6
Msa0485330 AT5G13910.1 57.143 63 27 0 6 68 19 81 9.45e-18 78.6
Msa0485330 AT1G28360.1 63.158 57 21 0 7 63 12 68 1.02e-17 78.2
Msa0485330 AT2G44940.1 61.404 57 22 0 7 63 100 156 1.03e-17 80.1
Msa0485330 AT4G32800.1 61.404 57 22 0 7 63 19 75 1.10e-17 78.6
Msa0485330 AT1G12890.1 56.923 65 28 0 2 66 16 80 1.14e-17 78.6
Msa0485330 AT4G06746.1 50.847 59 29 0 5 63 34 92 1.58e-17 76.6
Msa0485330 AT4G17500.1 53.947 76 33 2 2 75 143 218 1.79e-17 79.0
Msa0485330 AT2G25820.1 61.404 57 22 0 7 63 26 82 2.10e-17 78.2
Msa0485330 AT1G74930.1 53.448 58 27 0 6 63 20 77 2.65e-17 77.0
Msa0485330 AT5G11590.1 61.404 57 22 0 7 63 51 107 3.84e-17 77.4
Msa0485330 AT5G25810.1 59.649 57 23 0 7 63 36 92 3.91e-17 77.0
Msa0485330 AT3G60490.1 59.649 57 23 0 7 63 71 127 4.07e-17 77.8
Msa0485330 AT5G21960.1 52.381 63 30 0 1 63 1 63 4.14e-17 77.0
Msa0485330 AT4G25490.1 62.500 56 21 0 7 62 48 103 4.26e-17 77.0
Msa0485330 AT1G24590.1 63.158 57 21 0 6 62 57 113 4.34e-17 78.6
Msa0485330 AT3G50260.1 49.206 63 32 0 1 63 15 77 4.39e-17 75.5
Msa0485330 AT4G36900.1 49.180 61 31 0 3 63 26 86 4.50e-17 76.6
Msa0485330 AT3G16770.1 61.404 57 22 0 7 63 79 135 4.81e-17 77.4
Msa0485330 AT5G43410.1 62.712 59 21 1 6 63 14 72 6.10e-17 74.7
Msa0485330 AT4G25470.1 62.500 56 21 0 7 62 51 106 6.79e-17 76.6
Msa0485330 AT2G23340.1 50.847 59 29 0 5 63 26 84 1.08e-16 75.1
Msa0485330 AT1G71130.1 50.000 80 35 1 5 79 77 156 1.31e-16 74.3
Msa0485330 AT1G46768.1 42.500 80 46 0 5 84 29 108 1.45e-16 74.3
Msa0485330 AT1G46768.2 42.500 80 46 0 5 84 29 108 1.45e-16 74.3
Msa0485330 AT1G46768.3 42.500 80 46 0 5 84 29 108 1.52e-16 73.9
Msa0485330 AT5G47230.1 57.143 63 26 1 3 64 152 214 1.87e-16 76.6
Msa0485330 AT5G61600.1 55.738 61 26 1 5 64 86 146 1.91e-16 75.9
Msa0485330 AT2G40340.2 56.140 57 25 0 7 63 14 70 2.60e-16 76.3
Msa0485330 AT2G40340.5 56.140 57 25 0 7 63 14 70 2.60e-16 76.3
Msa0485330 AT2G40340.4 56.140 57 25 0 7 63 14 70 2.60e-16 76.3
Msa0485330 AT1G12980.1 57.895 57 24 0 6 62 56 112 3.11e-16 76.3
Msa0485330 AT5G07580.1 53.125 64 29 1 2 64 105 168 4.41e-16 74.3
Msa0485330 AT2G40340.3 56.140 57 25 0 7 63 72 128 4.64e-16 75.5
Msa0485330 AT2G40340.1 56.140 57 25 0 7 63 72 128 5.13e-16 75.9
Msa0485330 AT2G40340.6 56.140 57 25 0 7 63 79 135 5.59e-16 75.9
Msa0485330 AT5G67190.1 47.541 61 32 0 3 63 17 77 6.56e-16 73.2
Msa0485330 AT4G25480.1 58.929 56 23 0 7 62 51 106 7.54e-16 73.6
Msa0485330 AT5G51190.1 55.738 61 26 1 5 64 70 130 1.01e-15 73.6
Msa0485330 AT5G18450.1 60.714 56 22 0 7 62 34 89 1.54e-15 74.3
Msa0485330 AT4G17490.1 53.968 63 28 1 3 64 133 195 2.24e-15 73.6
Msa0485330 AT5G51990.1 58.929 56 23 0 7 62 54 109 2.56e-15 72.4
Msa0485330 AT1G75490.1 56.140 57 25 0 7 63 42 98 2.76e-15 72.0
Msa0485330 AT2G44840.1 55.932 59 25 1 6 63 91 149 4.49e-15 71.6
Msa0485330 AT3G23240.1 54.545 66 29 1 5 69 80 145 7.62e-15 70.9
Msa0485330 AT5G07310.1 50.588 85 35 1 1 78 86 170 9.88e-15 71.2
Msa0485330 AT2G40350.2 50.000 58 29 0 7 64 74 131 1.18e-14 69.3
Msa0485330 AT2G40350.1 50.000 58 29 0 7 64 67 124 1.38e-14 68.9
Msa0485330 AT1G63030.2 53.571 56 26 0 7 62 30 85 1.46e-14 69.3
Msa0485330 AT1G63030.1 53.571 56 26 0 7 62 30 85 1.46e-14 69.3
Msa0485330 AT5G64750.1 60.000 50 20 0 14 63 192 241 4.38e-14 70.5
Msa0485330 AT1G68550.1 65.217 46 16 0 2 47 108 153 4.39e-14 70.1
Msa0485330 AT1G68550.2 65.217 46 16 0 2 47 108 153 4.39e-14 70.1
Msa0485330 AT2G36450.1 56.897 58 24 1 7 63 15 72 4.94e-14 68.2
Msa0485330 AT2G31230.1 52.381 63 29 1 3 64 82 144 5.18e-14 69.3
Msa0485330 AT4G18450.1 53.125 64 28 2 3 64 106 169 5.55e-14 69.7
Msa0485330 AT1G12610.1 50.000 56 28 0 7 62 30 85 1.13e-13 67.8
Msa0485330 AT2G38340.1 57.576 66 20 1 6 63 69 134 2.12e-13 67.4
Msa0485330 AT1G43160.1 67.797 59 19 0 5 63 59 117 3.30e-13 66.2
Msa0485330 AT3G25890.1 68.421 38 12 0 9 46 133 170 6.21e-13 67.0
Msa0485330 AT3G25890.2 68.421 38 12 0 9 46 133 170 6.21e-13 67.0
Msa0485330 AT1G71520.1 48.387 62 28 1 6 63 13 74 1.46e-12 63.2
Msa0485330 AT1G22810.1 46.154 65 33 1 6 68 13 77 1.70e-12 63.2
Msa0485330 AT1G77200.1 61.404 57 22 0 7 63 43 99 2.70e-12 64.3
Msa0485330 AT4G34410.1 65.517 58 20 0 7 64 136 193 3.01e-12 64.7
Msa0485330 AT5G50080.1 60.656 61 24 0 3 63 73 133 6.38e-12 63.2
Msa0485330 AT5G50080.2 62.712 59 22 0 5 63 84 142 6.46e-12 63.2
Msa0485330 AT1G77640.1 59.375 64 25 1 5 67 41 104 9.51e-12 62.8
Msa0485330 AT1G33760.1 56.452 62 27 0 2 63 15 76 1.63e-11 61.2
Msa0485330 AT5G67180.2 35.965 114 73 0 4 117 186 299 2.80e-11 62.0
Msa0485330 AT1G49120.1 56.522 46 20 0 4 49 84 129 3.76e-11 62.0
Msa0485330 AT1G64380.1 57.576 66 28 0 3 68 132 197 4.35e-11 61.6
Msa0485330 AT1G53170.1 61.404 57 22 0 6 62 30 86 4.64e-11 60.1
Msa0485330 AT1G44830.1 57.143 63 26 1 2 63 30 92 6.13e-11 60.1
Msa0485330 AT5G67000.1 49.153 59 30 0 3 61 117 175 6.57e-11 59.7
Msa0485330 AT2G40220.1 59.649 57 23 0 6 62 54 110 8.93e-11 60.8

Find 72 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCCATGACTTGTTTA+AGG 0.117532 3_4:-2896705 Msa0485330:CDS
CCTTCAGGAGTTTGTGTTAT+TGG 0.146334 3_4:+2896829 None:intergenic
TTATCAAGGTCGTCATTATT+TGG 0.183342 3_4:-2896295 Msa0485330:three_prime_UTR
GGAAGTGTTCTGAATCAAAT+TGG 0.234986 3_4:-2896636 Msa0485330:CDS
CTTCAGGAGTTTGTGTTATT+GGG 0.272830 3_4:+2896830 None:intergenic
GGCAACGACATTGGGGTTCT+TGG 0.288387 3_4:-2897454 Msa0485330:CDS
AACAGAATACTTAGATATAA+AGG 0.294220 3_4:+2897566 None:intergenic
TGCTTAATATTGTTAATTGA+TGG 0.317524 3_4:+2896427 None:intergenic
TGTTATTGGGAAATTTGTTT+TGG 0.320121 3_4:+2896843 None:intergenic
TATCAAGGTCGTCATTATTT+GGG 0.340308 3_4:-2896294 Msa0485330:three_prime_UTR
CAACAACCACTTTGCAATCA+TGG 0.345653 3_4:-2897504 Msa0485330:exon
CGCACAATTTCCTCTTCCGT+TGG 0.351931 3_4:+2896526 None:intergenic
TACTGCTACTACCACTATCT+TGG 0.354080 3_4:+2896575 None:intergenic
AGGTGTCAGGCAACGACATT+GGG 0.366435 3_4:-2897462 Msa0485330:CDS
TCCCGATCAATTAACTTAGA+AGG 0.367168 3_4:-2896127 Msa0485330:three_prime_UTR
TCTAGATCCTTTGAAGTTGA+AGG 0.371055 3_4:+2896772 None:intergenic
GCAACGACATTGGGGTTCTT+GGG 0.387728 3_4:-2897453 Msa0485330:CDS
GCCTTCTAAGTTAATTGATC+GGG 0.414925 3_4:+2896126 None:intergenic
TACGTTATACTTATACAATA+TGG 0.433304 3_4:+2896209 None:intergenic
GCTTAATATTGTTAATTGAT+GGG 0.459696 3_4:+2896428 None:intergenic
ACTGCTACTACCACTATCTT+GGG 0.465989 3_4:+2896576 None:intergenic
GAAGTGTTCTGAATCAAATT+GGG 0.469920 3_4:-2896635 Msa0485330:CDS
GGGTTATGACTGTTCAGCTT+GGG 0.470654 3_4:-2896615 Msa0485330:CDS
ACAGAATACTTAGATATAAA+GGG 0.471588 3_4:+2897567 None:intergenic
GCACAATTTCCTCTTCCGTT+GGG 0.478599 3_4:+2896527 None:intergenic
ATACAATATGGTAGAAATGA+TGG 0.485451 3_4:+2896221 None:intergenic
TGCCTTCTAAGTTAATTGAT+CGG 0.487110 3_4:+2896125 None:intergenic
TTGTGCACTGCAAAGAGATA+TGG 0.495336 3_4:+2897524 None:intergenic
GAGGTGTCAGGCAACGACAT+TGG 0.508016 3_4:-2897463 Msa0485330:CDS
AATTGCACTGCAAATGATAG+AGG 0.511629 3_4:-2896479 Msa0485330:CDS
CGAAGAAGTTCAGAGGTGTC+AGG 0.518769 3_4:-2897475 Msa0485330:CDS
TAGTAGTGTGGTACCTTCAT+CGG 0.519007 3_4:-2896554 Msa0485330:CDS
TGGGTTATGACTGTTCAGCT+TGG 0.520211 3_4:-2896616 Msa0485330:CDS
AAAGGAGAAACTTACAAAAG+TGG 0.521443 3_4:+2897413 None:intergenic
ATCGGCTGTCCCAACGGAAG+AGG 0.522039 3_4:-2896536 Msa0485330:CDS
GGTGTGTGGCAAAAGCGTGC+TGG 0.523892 3_4:-2896658 Msa0485330:CDS
ATATTGTTAATTGATGGGCT+AGG 0.525309 3_4:+2896433 None:intergenic
TGATTTGAAATAGGAAGAGA+AGG 0.529271 3_4:-2896948 Msa0485330:intron
TCAATTAACAATATTAAGCA+AGG 0.530638 3_4:-2896424 Msa0485330:CDS
ATGAGTGTAACCCAAGATAG+TGG 0.536902 3_4:-2896586 Msa0485330:CDS
GTCAAGCCTTAAACAAGTCA+TGG 0.544055 3_4:+2896699 None:intergenic
ACCTTCATCGGCTGTCCCAA+CGG 0.544781 3_4:-2896542 Msa0485330:CDS
TCCGTTGGGACAGCCGATGA+AGG 0.548643 3_4:+2896541 None:intergenic
AACAGCAGAAGAAGCAGCAA+GGG 0.550748 3_4:-2896905 Msa0485330:CDS
GAACAAACCTTCAACTTCAA+AGG 0.551822 3_4:-2896779 Msa0485330:CDS
AAGGAGAAACTTACAAAAGT+GGG 0.567357 3_4:+2897414 None:intergenic
GACACAGAGAACTCTCACAT+TGG 0.580516 3_4:-2896679 Msa0485330:CDS
GTGTGTGGCAAAAGCGTGCT+GGG 0.580982 3_4:-2896657 Msa0485330:CDS
CCAATAACACAAACTCCTGA+AGG 0.585410 3_4:-2896829 Msa0485330:CDS
GATTTGAAATAGGAAGAGAA+GGG 0.596863 3_4:-2896947 Msa0485330:intron
CAATTAACAATATTAAGCAA+GGG 0.597426 3_4:-2896423 Msa0485330:CDS
AAACAAGTCATGGAAGGAGA+TGG 0.598852 3_4:+2896709 None:intergenic
ATGGAAGGACAAAGTTCAGA+GGG 0.601412 3_4:+2897543 None:intergenic
AAACAGCAGAAGAAGCAGCA+AGG 0.604524 3_4:-2896906 Msa0485330:CDS
AGGAAGAGAAGGGTGTGGCT+AGG 0.607854 3_4:-2896937 Msa0485330:CDS
TATGGAAGGACAAAGTTCAG+AGG 0.613662 3_4:+2897542 None:intergenic
GAAATAGGAAGAGAAGGGTG+TGG 0.616245 3_4:-2896942 Msa0485330:intron
AATTAACAATATTAAGCAAG+GGG 0.617992 3_4:-2896422 Msa0485330:CDS
ATAAGTCTACATGTAATGAG+TGG 0.618533 3_4:-2896248 Msa0485330:three_prime_UTR
AGCCTTAAACAAGTCATGGA+AGG 0.619939 3_4:+2896703 None:intergenic
TAAGTCTACATGTAATGAGT+GGG 0.622536 3_4:-2896247 Msa0485330:three_prime_UTR
TGGTAGTAGCAGTAGTAGTG+TGG 0.635225 3_4:-2896566 Msa0485330:CDS
AATACTTAGATATAAAGGGA+TGG 0.639001 3_4:+2897571 None:intergenic
ACTTAGATATAAAGGGATGG+AGG 0.639987 3_4:+2897574 None:intergenic
AAAACTTCGAAAATGTAGCA+AGG 0.664233 3_4:-2896734 Msa0485330:CDS
AGTAAGTGTACGTACACTGT+CGG 0.670217 3_4:+2897607 None:intergenic
AGAACTCTCACATTGGTGTG+TGG 0.670704 3_4:-2896672 Msa0485330:CDS
GTTCAATCGAAGAAGTTCAG+AGG 0.671868 3_4:-2897482 Msa0485330:CDS
ACGGAAGAGGAAATTGTGCG+AGG 0.686358 3_4:-2896523 Msa0485330:CDS
ATTGAACCATGATTGCAAAG+TGG 0.690384 3_4:+2897498 None:intergenic
GGTGTCAGGCAACGACATTG+GGG 0.724283 3_4:-2897461 Msa0485330:CDS
GCACTGCAAAGAGATATGGA+AGG 0.759779 3_4:+2897528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAGAATACTTAGATATAAA+GGG + chr3_4:2896168-2896187 None:intergenic 20.0%
!! AACAGAATACTTAGATATAA+AGG + chr3_4:2896169-2896188 None:intergenic 20.0%
!!! AGACAAATATAGTTTTTCTT+TGG - chr3_4:2896692-2896711 Msa0485330:CDS 20.0%
!!! GTAACTATTTGATTTGAAAT+AGG - chr3_4:2896775-2896794 Msa0485330:CDS 20.0%
!! GCTTAATATTGTTAATTGAT+GGG + chr3_4:2897307-2897326 None:intergenic 20.0%
!! TGCTTAATATTGTTAATTGA+TGG + chr3_4:2897308-2897327 None:intergenic 20.0%
!! TCAATTAACAATATTAAGCA+AGG - chr3_4:2897308-2897327 Msa0485330:intron 20.0%
!! CAATTAACAATATTAAGCAA+GGG - chr3_4:2897309-2897328 Msa0485330:intron 20.0%
!! AATTAACAATATTAAGCAAG+GGG - chr3_4:2897310-2897329 Msa0485330:intron 20.0%
!!! ATTTAATCTCTCTTTTATCA+AGG - chr3_4:2897423-2897442 Msa0485330:intron 20.0%
!! TACGTTATACTTATACAATA+TGG + chr3_4:2897526-2897545 None:intergenic 20.0%
!! ACAGAATACTTAGATATAAA+GGG + chr3_4:2896168-2896187 None:intergenic 20.0%
!! AACAGAATACTTAGATATAA+AGG + chr3_4:2896169-2896188 None:intergenic 20.0%
!!! AGACAAATATAGTTTTTCTT+TGG - chr3_4:2896692-2896711 Msa0485330:CDS 20.0%
!!! GTAACTATTTGATTTGAAAT+AGG - chr3_4:2896775-2896794 Msa0485330:CDS 20.0%
!! GCTTAATATTGTTAATTGAT+GGG + chr3_4:2897307-2897326 None:intergenic 20.0%
!! TGCTTAATATTGTTAATTGA+TGG + chr3_4:2897308-2897327 None:intergenic 20.0%
!! TCAATTAACAATATTAAGCA+AGG - chr3_4:2897308-2897327 Msa0485330:intron 20.0%
!! CAATTAACAATATTAAGCAA+GGG - chr3_4:2897309-2897328 Msa0485330:intron 20.0%
!! AATTAACAATATTAAGCAAG+GGG - chr3_4:2897310-2897329 Msa0485330:intron 20.0%
!!! ATTTAATCTCTCTTTTATCA+AGG - chr3_4:2897423-2897442 Msa0485330:intron 20.0%
!! TACGTTATACTTATACAATA+TGG + chr3_4:2897526-2897545 None:intergenic 20.0%
! AATACTTAGATATAAAGGGA+TGG + chr3_4:2896164-2896183 None:intergenic 25.0%
! TAGATAGATAGATACATACA+TGG + chr3_4:2896362-2896381 None:intergenic 25.0%
! GTTTAACTATTTGTCAAAAC+AGG - chr3_4:2896446-2896465 Msa0485330:CDS 25.0%
! TTATAAACTTGGATCTTCTA+GGG + chr3_4:2896550-2896569 None:intergenic 25.0%
! ATTATAAACTTGGATCTTCT+AGG + chr3_4:2896551-2896570 None:intergenic 25.0%
! GTGTGAAAAGATTATAAACT+TGG + chr3_4:2896561-2896580 None:intergenic 25.0%
!!! TAACTAGTTTTTACATCTCT+AGG - chr3_4:2896651-2896670 Msa0485330:CDS 25.0%
!!! TGTTATTGGGAAATTTGTTT+TGG + chr3_4:2896892-2896911 None:intergenic 25.0%
!! TCATTACTTGTAATGCTTTT+TGG + chr3_4:2896933-2896952 None:intergenic 25.0%
! ATACAATATGGTAGAAATGA+TGG + chr3_4:2897514-2897533 None:intergenic 25.0%
! AATACTTAGATATAAAGGGA+TGG + chr3_4:2896164-2896183 None:intergenic 25.0%
! TAGATAGATAGATACATACA+TGG + chr3_4:2896362-2896381 None:intergenic 25.0%
! GTTTAACTATTTGTCAAAAC+AGG - chr3_4:2896446-2896465 Msa0485330:CDS 25.0%
! TTATAAACTTGGATCTTCTA+GGG + chr3_4:2896550-2896569 None:intergenic 25.0%
! ATTATAAACTTGGATCTTCT+AGG + chr3_4:2896551-2896570 None:intergenic 25.0%
! GTGTGAAAAGATTATAAACT+TGG + chr3_4:2896561-2896580 None:intergenic 25.0%
!!! TAACTAGTTTTTACATCTCT+AGG - chr3_4:2896651-2896670 Msa0485330:CDS 25.0%
!!! TGTTATTGGGAAATTTGTTT+TGG + chr3_4:2896892-2896911 None:intergenic 25.0%
!! TCATTACTTGTAATGCTTTT+TGG + chr3_4:2896933-2896952 None:intergenic 25.0%
! ATACAATATGGTAGAAATGA+TGG + chr3_4:2897514-2897533 None:intergenic 25.0%
AAGGAGAAACTTACAAAAGT+GGG + chr3_4:2896321-2896340 None:intergenic 30.0%
AAAGGAGAAACTTACAAAAG+TGG + chr3_4:2896322-2896341 None:intergenic 30.0%
ACCACAAGAAAAAAGTTGAA+TGG - chr3_4:2896579-2896598 Msa0485330:CDS 30.0%
!!! TCCATTCAACTTTTTTCTTG+TGG + chr3_4:2896583-2896602 None:intergenic 30.0%
!!! TCTTTGGTTCTAACTTTTGT+TGG - chr3_4:2896708-2896727 Msa0485330:CDS 30.0%
! TGATTTGAAATAGGAAGAGA+AGG - chr3_4:2896784-2896803 Msa0485330:CDS 30.0%
! GATTTGAAATAGGAAGAGAA+GGG - chr3_4:2896785-2896804 Msa0485330:CDS 30.0%
AAAACTTCGAAAATGTAGCA+AGG - chr3_4:2896998-2897017 Msa0485330:intron 30.0%
! GAAGTGTTCTGAATCAAATT+GGG - chr3_4:2897097-2897116 Msa0485330:intron 30.0%
!! ATATTGTTAATTGATGGGCT+AGG + chr3_4:2897302-2897321 None:intergenic 30.0%
TTATCAAGGTCGTCATTATT+TGG - chr3_4:2897437-2897456 Msa0485330:CDS 30.0%
TATCAAGGTCGTCATTATTT+GGG - chr3_4:2897438-2897457 Msa0485330:CDS 30.0%
ATAAGTCTACATGTAATGAG+TGG - chr3_4:2897484-2897503 Msa0485330:CDS 30.0%
TAAGTCTACATGTAATGAGT+GGG - chr3_4:2897485-2897504 Msa0485330:CDS 30.0%
AAGGAGAAACTTACAAAAGT+GGG + chr3_4:2896321-2896340 None:intergenic 30.0%
AAAGGAGAAACTTACAAAAG+TGG + chr3_4:2896322-2896341 None:intergenic 30.0%
ACCACAAGAAAAAAGTTGAA+TGG - chr3_4:2896579-2896598 Msa0485330:CDS 30.0%
!!! TCCATTCAACTTTTTTCTTG+TGG + chr3_4:2896583-2896602 None:intergenic 30.0%
!!! TCTTTGGTTCTAACTTTTGT+TGG - chr3_4:2896708-2896727 Msa0485330:CDS 30.0%
! TGATTTGAAATAGGAAGAGA+AGG - chr3_4:2896784-2896803 Msa0485330:CDS 30.0%
! GATTTGAAATAGGAAGAGAA+GGG - chr3_4:2896785-2896804 Msa0485330:CDS 30.0%
AAAACTTCGAAAATGTAGCA+AGG - chr3_4:2896998-2897017 Msa0485330:intron 30.0%
! GAAGTGTTCTGAATCAAATT+GGG - chr3_4:2897097-2897116 Msa0485330:intron 30.0%
!! ATATTGTTAATTGATGGGCT+AGG + chr3_4:2897302-2897321 None:intergenic 30.0%
TTATCAAGGTCGTCATTATT+TGG - chr3_4:2897437-2897456 Msa0485330:CDS 30.0%
TATCAAGGTCGTCATTATTT+GGG - chr3_4:2897438-2897457 Msa0485330:CDS 30.0%
ATAAGTCTACATGTAATGAG+TGG - chr3_4:2897484-2897503 Msa0485330:CDS 30.0%
TAAGTCTACATGTAATGAGT+GGG - chr3_4:2897485-2897504 Msa0485330:CDS 30.0%
ACTTAGATATAAAGGGATGG+AGG + chr3_4:2896161-2896180 None:intergenic 35.0%
ATTGAACCATGATTGCAAAG+TGG + chr3_4:2896237-2896256 None:intergenic 35.0%
GAGACTGAAATGAAATGGAA+AGG + chr3_4:2896340-2896359 None:intergenic 35.0%
ACATGGAGACTGAAATGAAA+TGG + chr3_4:2896345-2896364 None:intergenic 35.0%
GCATCAAGCAGTTAGATTAA+TGG + chr3_4:2896513-2896532 None:intergenic 35.0%
TAATCTAACTGCTTGATGCA+AGG - chr3_4:2896514-2896533 Msa0485330:CDS 35.0%
! CTTCAGGAGTTTGTGTTATT+GGG + chr3_4:2896905-2896924 None:intergenic 35.0%
GAACAAACCTTCAACTTCAA+AGG - chr3_4:2896953-2896972 Msa0485330:intron 35.0%
!! TCTAGATCCTTTGAAGTTGA+AGG + chr3_4:2896963-2896982 None:intergenic 35.0%
!! GGAAGTGTTCTGAATCAAAT+TGG - chr3_4:2897096-2897115 Msa0485330:intron 35.0%
AATTGCACTGCAAATGATAG+AGG - chr3_4:2897253-2897272 Msa0485330:intron 35.0%
TCCCGATCAATTAACTTAGA+AGG - chr3_4:2897605-2897624 Msa0485330:five_prime_UTR 35.0%
GCCTTCTAAGTTAATTGATC+GGG + chr3_4:2897609-2897628 None:intergenic 35.0%
ACTTAGATATAAAGGGATGG+AGG + chr3_4:2896161-2896180 None:intergenic 35.0%
ATTGAACCATGATTGCAAAG+TGG + chr3_4:2896237-2896256 None:intergenic 35.0%
GAGACTGAAATGAAATGGAA+AGG + chr3_4:2896340-2896359 None:intergenic 35.0%
ACATGGAGACTGAAATGAAA+TGG + chr3_4:2896345-2896364 None:intergenic 35.0%
GCATCAAGCAGTTAGATTAA+TGG + chr3_4:2896513-2896532 None:intergenic 35.0%
TAATCTAACTGCTTGATGCA+AGG - chr3_4:2896514-2896533 Msa0485330:CDS 35.0%
! CTTCAGGAGTTTGTGTTATT+GGG + chr3_4:2896905-2896924 None:intergenic 35.0%
GAACAAACCTTCAACTTCAA+AGG - chr3_4:2896953-2896972 Msa0485330:intron 35.0%
!! TCTAGATCCTTTGAAGTTGA+AGG + chr3_4:2896963-2896982 None:intergenic 35.0%
!! GGAAGTGTTCTGAATCAAAT+TGG - chr3_4:2897096-2897115 Msa0485330:intron 35.0%
AATTGCACTGCAAATGATAG+AGG - chr3_4:2897253-2897272 Msa0485330:intron 35.0%
TCCCGATCAATTAACTTAGA+AGG - chr3_4:2897605-2897624 Msa0485330:five_prime_UTR 35.0%
GCCTTCTAAGTTAATTGATC+GGG + chr3_4:2897609-2897628 None:intergenic 35.0%
ATGGAAGGACAAAGTTCAGA+GGG + chr3_4:2896192-2896211 None:intergenic 40.0%
TATGGAAGGACAAAGTTCAG+AGG + chr3_4:2896193-2896212 None:intergenic 40.0%
TTGTGCACTGCAAAGAGATA+TGG + chr3_4:2896211-2896230 None:intergenic 40.0%
CAACAACCACTTTGCAATCA+TGG - chr3_4:2896228-2896247 Msa0485330:three_prime_UTR 40.0%
GTTCAATCGAAGAAGTTCAG+AGG - chr3_4:2896250-2896269 Msa0485330:three_prime_UTR 40.0%
!! AACTTGGATCTTCTAGGGTT+AGG + chr3_4:2896545-2896564 None:intergenic 40.0%
!! CAAGCTGCGATTTTAATGAG+TGG - chr3_4:2896858-2896877 Msa0485330:CDS 40.0%
CCTTCAGGAGTTTGTGTTAT+TGG + chr3_4:2896906-2896925 None:intergenic 40.0%
CCAATAACACAAACTCCTGA+AGG - chr3_4:2896903-2896922 Msa0485330:CDS 40.0%
!! ATGCTTTTTGGATCACCTTC+AGG + chr3_4:2896921-2896940 None:intergenic 40.0%
AAACAAGTCATGGAAGGAGA+TGG + chr3_4:2897026-2897045 None:intergenic 40.0%
!! CTCCTTCCATGACTTGTTTA+AGG - chr3_4:2897027-2897046 Msa0485330:intron 40.0%
AGCCTTAAACAAGTCATGGA+AGG + chr3_4:2897032-2897051 None:intergenic 40.0%
GTCAAGCCTTAAACAAGTCA+TGG + chr3_4:2897036-2897055 None:intergenic 40.0%
ATGAGTGTAACCCAAGATAG+TGG - chr3_4:2897146-2897165 Msa0485330:intron 40.0%
ACTGCTACTACCACTATCTT+GGG + chr3_4:2897159-2897178 None:intergenic 40.0%
TACTGCTACTACCACTATCT+TGG + chr3_4:2897160-2897179 None:intergenic 40.0%
TAGTAGTGTGGTACCTTCAT+CGG - chr3_4:2897178-2897197 Msa0485330:intron 40.0%
AGTAAGTGTACGTACACTGT+CGG + chr3_4:2896128-2896147 None:intergenic 40.0%
ATGGAAGGACAAAGTTCAGA+GGG + chr3_4:2896192-2896211 None:intergenic 40.0%
TATGGAAGGACAAAGTTCAG+AGG + chr3_4:2896193-2896212 None:intergenic 40.0%
TTGTGCACTGCAAAGAGATA+TGG + chr3_4:2896211-2896230 None:intergenic 40.0%
CAACAACCACTTTGCAATCA+TGG - chr3_4:2896228-2896247 Msa0485330:three_prime_UTR 40.0%
GTTCAATCGAAGAAGTTCAG+AGG - chr3_4:2896250-2896269 Msa0485330:three_prime_UTR 40.0%
!! AACTTGGATCTTCTAGGGTT+AGG + chr3_4:2896545-2896564 None:intergenic 40.0%
!! CAAGCTGCGATTTTAATGAG+TGG - chr3_4:2896858-2896877 Msa0485330:CDS 40.0%
CCTTCAGGAGTTTGTGTTAT+TGG + chr3_4:2896906-2896925 None:intergenic 40.0%
CCAATAACACAAACTCCTGA+AGG - chr3_4:2896903-2896922 Msa0485330:CDS 40.0%
!! ATGCTTTTTGGATCACCTTC+AGG + chr3_4:2896921-2896940 None:intergenic 40.0%
AAACAAGTCATGGAAGGAGA+TGG + chr3_4:2897026-2897045 None:intergenic 40.0%
!! CTCCTTCCATGACTTGTTTA+AGG - chr3_4:2897027-2897046 Msa0485330:intron 40.0%
AGCCTTAAACAAGTCATGGA+AGG + chr3_4:2897032-2897051 None:intergenic 40.0%
GTCAAGCCTTAAACAAGTCA+TGG + chr3_4:2897036-2897055 None:intergenic 40.0%
ATGAGTGTAACCCAAGATAG+TGG - chr3_4:2897146-2897165 Msa0485330:intron 40.0%
ACTGCTACTACCACTATCTT+GGG + chr3_4:2897159-2897178 None:intergenic 40.0%
TACTGCTACTACCACTATCT+TGG + chr3_4:2897160-2897179 None:intergenic 40.0%
TAGTAGTGTGGTACCTTCAT+CGG - chr3_4:2897178-2897197 Msa0485330:intron 40.0%
GCACTGCAAAGAGATATGGA+AGG + chr3_4:2896207-2896226 None:intergenic 45.0%
GAAATAGGAAGAGAAGGGTG+TGG - chr3_4:2896790-2896809 Msa0485330:CDS 45.0%
AAACAGCAGAAGAAGCAGCA+AGG - chr3_4:2896826-2896845 Msa0485330:CDS 45.0%
AACAGCAGAAGAAGCAGCAA+GGG - chr3_4:2896827-2896846 Msa0485330:CDS 45.0%
GACACAGAGAACTCTCACAT+TGG - chr3_4:2897053-2897072 Msa0485330:intron 45.0%
AGAACTCTCACATTGGTGTG+TGG - chr3_4:2897060-2897079 Msa0485330:intron 45.0%
TGGGTTATGACTGTTCAGCT+TGG - chr3_4:2897116-2897135 Msa0485330:intron 45.0%
GGGTTATGACTGTTCAGCTT+GGG - chr3_4:2897117-2897136 Msa0485330:intron 45.0%
TGGTAGTAGCAGTAGTAGTG+TGG - chr3_4:2897166-2897185 Msa0485330:intron 45.0%
GCACAATTTCCTCTTCCGTT+GGG + chr3_4:2897208-2897227 None:intergenic 45.0%
GCACTGCAAAGAGATATGGA+AGG + chr3_4:2896207-2896226 None:intergenic 45.0%
GAAATAGGAAGAGAAGGGTG+TGG - chr3_4:2896790-2896809 Msa0485330:CDS 45.0%
AAACAGCAGAAGAAGCAGCA+AGG - chr3_4:2896826-2896845 Msa0485330:CDS 45.0%
AACAGCAGAAGAAGCAGCAA+GGG - chr3_4:2896827-2896846 Msa0485330:CDS 45.0%
GACACAGAGAACTCTCACAT+TGG - chr3_4:2897053-2897072 Msa0485330:intron 45.0%
AGAACTCTCACATTGGTGTG+TGG - chr3_4:2897060-2897079 Msa0485330:intron 45.0%
TGGGTTATGACTGTTCAGCT+TGG - chr3_4:2897116-2897135 Msa0485330:intron 45.0%
GGGTTATGACTGTTCAGCTT+GGG - chr3_4:2897117-2897136 Msa0485330:intron 45.0%
TGGTAGTAGCAGTAGTAGTG+TGG - chr3_4:2897166-2897185 Msa0485330:intron 45.0%
GCACAATTTCCTCTTCCGTT+GGG + chr3_4:2897208-2897227 None:intergenic 45.0%
!! CGAAGAAGTTCAGAGGTGTC+AGG - chr3_4:2896257-2896276 Msa0485330:three_prime_UTR 50.0%
AGGTGTCAGGCAACGACATT+GGG - chr3_4:2896270-2896289 Msa0485330:three_prime_UTR 50.0%
GCAACGACATTGGGGTTCTT+GGG - chr3_4:2896279-2896298 Msa0485330:three_prime_UTR 50.0%
CGCACAATTTCCTCTTCCGT+TGG + chr3_4:2897209-2897228 None:intergenic 50.0%
ACGGAAGAGGAAATTGTGCG+AGG - chr3_4:2897209-2897228 Msa0485330:intron 50.0%
!! CGAAGAAGTTCAGAGGTGTC+AGG - chr3_4:2896257-2896276 Msa0485330:three_prime_UTR 50.0%
AGGTGTCAGGCAACGACATT+GGG - chr3_4:2896270-2896289 Msa0485330:three_prime_UTR 50.0%
GCAACGACATTGGGGTTCTT+GGG - chr3_4:2896279-2896298 Msa0485330:three_prime_UTR 50.0%
CGCACAATTTCCTCTTCCGT+TGG + chr3_4:2897209-2897228 None:intergenic 50.0%
ACGGAAGAGGAAATTGTGCG+AGG - chr3_4:2897209-2897228 Msa0485330:intron 50.0%
! GAGGTGTCAGGCAACGACAT+TGG - chr3_4:2896269-2896288 Msa0485330:three_prime_UTR 55.0%
GGTGTCAGGCAACGACATTG+GGG - chr3_4:2896271-2896290 Msa0485330:three_prime_UTR 55.0%
GGCAACGACATTGGGGTTCT+TGG - chr3_4:2896278-2896297 Msa0485330:three_prime_UTR 55.0%
! AGGAAGAGAAGGGTGTGGCT+AGG - chr3_4:2896795-2896814 Msa0485330:CDS 55.0%
! GTGTGTGGCAAAAGCGTGCT+GGG - chr3_4:2897075-2897094 Msa0485330:intron 55.0%
! ACCTTCATCGGCTGTCCCAA+CGG - chr3_4:2897190-2897209 Msa0485330:intron 55.0%
! GAGGTGTCAGGCAACGACAT+TGG - chr3_4:2896269-2896288 Msa0485330:three_prime_UTR 55.0%
GGTGTCAGGCAACGACATTG+GGG - chr3_4:2896271-2896290 Msa0485330:three_prime_UTR 55.0%
GGCAACGACATTGGGGTTCT+TGG - chr3_4:2896278-2896297 Msa0485330:three_prime_UTR 55.0%
! AGGAAGAGAAGGGTGTGGCT+AGG - chr3_4:2896795-2896814 Msa0485330:CDS 55.0%
! GTGTGTGGCAAAAGCGTGCT+GGG - chr3_4:2897075-2897094 Msa0485330:intron 55.0%
! ACCTTCATCGGCTGTCCCAA+CGG - chr3_4:2897190-2897209 Msa0485330:intron 55.0%
! GGTGTGTGGCAAAAGCGTGC+TGG - chr3_4:2897074-2897093 Msa0485330:intron 60.0%
TCCGTTGGGACAGCCGATGA+AGG + chr3_4:2897194-2897213 None:intergenic 60.0%
ATCGGCTGTCCCAACGGAAG+AGG - chr3_4:2897196-2897215 Msa0485330:intron 60.0%
! GGTGTGTGGCAAAAGCGTGC+TGG - chr3_4:2897074-2897093 Msa0485330:intron 60.0%
TCCGTTGGGACAGCCGATGA+AGG + chr3_4:2897194-2897213 None:intergenic 60.0%
ATCGGCTGTCCCAACGGAAG+AGG - chr3_4:2897196-2897215 Msa0485330:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2896126 2897628 2896126 ID=Msa0485330;Name=Msa0485330
chr3_4 mRNA 2896126 2897628 2896126 ID=Msa0485330-mRNA-1;Parent=Msa0485330;Name=Msa0485330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|2|258|217
chr3_4 exon 2896126 2896957 2896126 ID=Msa0485330-mRNA-1:exon:1010;Parent=Msa0485330-mRNA-1
chr3_4 exon 2897428 2897628 2897428 ID=Msa0485330-mRNA-1:exon:1009;Parent=Msa0485330-mRNA-1
chr3_4 five_prime_UTR 2897508 2897628 2897508 ID=Msa0485330-mRNA-1:five_prime_utr;Parent=Msa0485330-mRNA-1
chr3_4 CDS 2897428 2897507 2897428 ID=Msa0485330-mRNA-1:cds;Parent=Msa0485330-mRNA-1
chr3_4 CDS 2896384 2896957 2896384 ID=Msa0485330-mRNA-1:cds;Parent=Msa0485330-mRNA-1
chr3_4 three_prime_UTR 2896126 2896383 2896126 ID=Msa0485330-mRNA-1:three_prime_utr;Parent=Msa0485330-mRNA-1
Gene Sequence

>Msa0485330

ATGGTTCAATCGAAGAAGTTCAGAGGTGTCAGGCAACGACATTGGGGTTCTTGGGTTTCTGAGATTCGTCACCCACTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCAAGGGCATATGATCAAGCTGCGATTTTAATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACACAAACTCCTGAAGGTGATCCAAAAAGCATTACAAGTAATGAGAACAAACCTTCAACTTCAAAGGATCTAGAAGAAATTCTACATGCAAAACTTCGAAAATGTAGCAAGGTACCATCTCCTTCCATGACTTGTTTAAGGCTTGACACAGAGAACTCTCACATTGGTGTGTGGCAAAAGCGTGCTGGGAAGTGTTCTGAATCAAATTGGGTTATGACTGTTCAGCTTGGGAAGAAGATGAGTGTAACCCAAGATAGTGGTAGTAGCAGTAGTAGTGTGGTACCTTCATCGGCTGTCCCAACGGAAGAGGAAATTGTGCGAGGAGAGATTGATGAAGAAGACAGAATTGCACTGCAAATGATAGAGGAACTTCTTAATGACAAGAACTGTCCTAGCCCATCAATTAACAATATTAAGCAAGGGGATGATATTGATAACATTGATAACAGCTTTTTTCTTTAA
Protein sequence

>Msa0485330

MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSNENKPSTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGKCSESNWVMTVQLGKKMSVTQDSGSSSSSVVPSSAVPTEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNIKQGDDIDNIDNSFFL*