Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485590 | XP_024631778.1 | 72.414 | 116 | 6 | 1 | 1 | 90 | 20 | 135 | 6.91e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485590 | sp|Q9LJX0|AB19B_ARATH | 85.000 | 60 | 9 | 0 | 1 | 60 | 679 | 738 | 8.14e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485590 | G7IGF4 | 62.687 | 134 | 6 | 2 | 1 | 90 | 20 | 153 | 1.34e-42 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0485590 | Msa0506110 | 0.802319 | 5.936770e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485590 | MtrunA17_Chr2g0300791 | 62.687 | 134 | 6 | 2 | 1 | 90 | 20 | 153 | 2.59e-46 | 145 |
| Msa0485590 | MtrunA17_Chr6g0453051 | 96.667 | 60 | 2 | 0 | 1 | 60 | 677 | 736 | 1.65e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485590 | AT3G28860.1 | 85.000 | 60 | 9 | 0 | 1 | 60 | 679 | 738 | 8.27e-31 | 114 |
Find 20 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTGGATCTGTTCTTTC+TGG | 0.111913 | 3_4:+3261903 | Msa0485590:CDS |
| TCTGTTCTTTCTGGATTCAT+TGG | 0.278222 | 3_4:+3261912 | Msa0485590:CDS |
| GCCAGTCCAAGCAAAGGTTT+AGG | 0.415775 | 3_4:+3263460 | Msa0485590:CDS |
| AACCTCCCTAAACCTTTGCT+TGG | 0.427067 | 3_4:-3263466 | None:intergenic |
| CCAGTCCAAGCAAAGGTTTA+GGG | 0.432258 | 3_4:+3263461 | Msa0485590:CDS |
| CCCTAAACCTTTGCTTGGAC+TGG | 0.434149 | 3_4:-3263461 | None:intergenic |
| CTCATAACAATAGCAAAAGT+TGG | 0.446140 | 3_4:-3261936 | None:intergenic |
| CGAGTGGCCTTACTCGATAA+TGG | 0.449375 | 3_4:+3261878 | Msa0485590:CDS |
| GCTGGAAGAATGATGCTTGC+AGG | 0.461111 | 3_4:+3262041 | Msa0485590:CDS |
| ACTGCTTCCATTATCGAGTA+AGG | 0.499419 | 3_4:-3261885 | None:intergenic |
| TTGCCTCAAACCGGACTACC+AGG | 0.524335 | 3_4:-3263498 | None:intergenic |
| CATTATCGAGTAAGGCCACT+CGG | 0.531177 | 3_4:-3261877 | None:intergenic |
| CTATAGAAACTATGCATCCA+TGG | 0.537119 | 3_4:+3261980 | Msa0485590:CDS |
| ATCCATGGAGAAGAAAACTA+AGG | 0.560712 | 3_4:+3261995 | Msa0485590:CDS |
| TACTCGATAATGGAAGCAGT+TGG | 0.573419 | 3_4:+3261888 | Msa0485590:CDS |
| TGTTATGAGCAATATGATTG+AGG | 0.589160 | 3_4:+3261950 | Msa0485590:CDS |
| GTCCAAGCAAAGGTTTAGGG+AGG | 0.607778 | 3_4:+3263464 | Msa0485590:CDS |
| GTCTGCGCCAGTCCAAGCAA+AGG | 0.613858 | 3_4:+3263454 | Msa0485590:CDS |
| ATTATCGAGTAAGGCCACTC+GGG | 0.616588 | 3_4:-3261876 | None:intergenic |
| TCAAAATGAATGCGCCCGAG+TGG | 0.666231 | 3_4:+3261862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCAACTATTAAGAATGTT+TGG | + | chr3_4:3262091-3262110 | Msa0485590:intron | 20.0% |
| !! | TTTGGAAAATAGTTTACAAA+TGG | + | chr3_4:3262109-3262128 | Msa0485590:intron | 20.0% |
| !!! | TCTTTTTTTTTTTAAACCCT+TGG | - | chr3_4:3262858-3262877 | None:intergenic | 20.0% |
| !! | AGGGTTTAAAAAAAAAAAGA+AGG | + | chr3_4:3262858-3262877 | Msa0485590:intron | 20.0% |
| !! | TATCAACTATTAAGAATGTT+TGG | + | chr3_4:3262091-3262110 | Msa0485590:intron | 20.0% |
| !! | TTTGGAAAATAGTTTACAAA+TGG | + | chr3_4:3262109-3262128 | Msa0485590:intron | 20.0% |
| !!! | TCTTTTTTTTTTTAAACCCT+TGG | - | chr3_4:3262858-3262877 | None:intergenic | 20.0% |
| !! | AGGGTTTAAAAAAAAAAAGA+AGG | + | chr3_4:3262858-3262877 | Msa0485590:intron | 20.0% |
| !! | GAATATGTTTTCATATACAC+AGG | + | chr3_4:3262017-3262036 | Msa0485590:CDS | 25.0% |
| !! | TTTTTGCTTTACCTATTTTG+AGG | + | chr3_4:3262223-3262242 | Msa0485590:intron | 25.0% |
| !! | CATGATTTCTAGACTAATAT+AGG | - | chr3_4:3262515-3262534 | None:intergenic | 25.0% |
| ! | TACATTCTAACTTTGGTAAA+CGG | + | chr3_4:3262589-3262608 | Msa0485590:intron | 25.0% |
| ! | TTATACTATCTAATCAAGCA+CGG | - | chr3_4:3262677-3262696 | None:intergenic | 25.0% |
| ! | CTATTAGAAAACACAAACTT+GGG | - | chr3_4:3262755-3262774 | None:intergenic | 25.0% |
| ! | ACTATTAGAAAACACAAACT+TGG | - | chr3_4:3262756-3262775 | None:intergenic | 25.0% |
| ! | TAACTCTATAATTGATCAAG+AGG | + | chr3_4:3262775-3262794 | Msa0485590:intron | 25.0% |
| ! | AAAAAAAAAGAAGGAAGAAG+AGG | + | chr3_4:3262867-3262886 | Msa0485590:intron | 25.0% |
| ! | TTTCATAGAACAATGTTAGA+AGG | + | chr3_4:3262908-3262927 | Msa0485590:intron | 25.0% |
| ! | TTCATAGAACAATGTTAGAA+GGG | + | chr3_4:3262909-3262928 | Msa0485590:intron | 25.0% |
| ! | AATATCTTTAATGCTTATGC+AGG | + | chr3_4:3263106-3263125 | Msa0485590:intron | 25.0% |
| !!! | AATGCTACTTTATGTTCTTT+TGG | + | chr3_4:3263134-3263153 | Msa0485590:intron | 25.0% |
| !!! | AATGCTACTTTATGTTCTTT+TGG | + | chr3_4:3263134-3263153 | Msa0485590:intron | 25.0% |
| !! | GAATATGTTTTCATATACAC+AGG | + | chr3_4:3262017-3262036 | Msa0485590:CDS | 25.0% |
| !! | TTTTTGCTTTACCTATTTTG+AGG | + | chr3_4:3262223-3262242 | Msa0485590:intron | 25.0% |
| !! | CATGATTTCTAGACTAATAT+AGG | - | chr3_4:3262515-3262534 | None:intergenic | 25.0% |
| ! | TACATTCTAACTTTGGTAAA+CGG | + | chr3_4:3262589-3262608 | Msa0485590:intron | 25.0% |
| ! | TTATACTATCTAATCAAGCA+CGG | - | chr3_4:3262677-3262696 | None:intergenic | 25.0% |
| ! | CTATTAGAAAACACAAACTT+GGG | - | chr3_4:3262755-3262774 | None:intergenic | 25.0% |
| ! | ACTATTAGAAAACACAAACT+TGG | - | chr3_4:3262756-3262775 | None:intergenic | 25.0% |
| ! | TAACTCTATAATTGATCAAG+AGG | + | chr3_4:3262775-3262794 | Msa0485590:intron | 25.0% |
| ! | AAAAAAAAAGAAGGAAGAAG+AGG | + | chr3_4:3262867-3262886 | Msa0485590:intron | 25.0% |
| ! | TTTCATAGAACAATGTTAGA+AGG | + | chr3_4:3262908-3262927 | Msa0485590:intron | 25.0% |
| ! | TTCATAGAACAATGTTAGAA+GGG | + | chr3_4:3262909-3262928 | Msa0485590:intron | 25.0% |
| ! | AATATCTTTAATGCTTATGC+AGG | + | chr3_4:3263106-3263125 | Msa0485590:intron | 25.0% |
| !!! | AATGCTACTTTATGTTCTTT+TGG | + | chr3_4:3263134-3263153 | Msa0485590:intron | 25.0% |
| !!! | AATGCTACTTTATGTTCTTT+TGG | + | chr3_4:3263134-3263153 | Msa0485590:intron | 25.0% |
| CTCATAACAATAGCAAAAGT+TGG | - | chr3_4:3261939-3261958 | None:intergenic | 30.0% | |
| TGTTATGAGCAATATGATTG+AGG | + | chr3_4:3261950-3261969 | Msa0485590:CDS | 30.0% | |
| TCACTTCTTTCATTGTTGAA+TGG | + | chr3_4:3262382-3262401 | Msa0485590:intron | 30.0% | |
| TTCTTTCATTGTTGAATGGA+GGG | + | chr3_4:3262386-3262405 | Msa0485590:intron | 30.0% | |
| !! | AATTTGCTAGAACAAGAAGA+GGG | - | chr3_4:3262437-3262456 | None:intergenic | 30.0% |
| !! | AAATTTGCTAGAACAAGAAG+AGG | - | chr3_4:3262438-3262457 | None:intergenic | 30.0% |
| TACCAAAGTTAGAATGTAAG+TGG | - | chr3_4:3262587-3262606 | None:intergenic | 30.0% | |
| AAAATAACACATTCAATGCC+AGG | - | chr3_4:3262716-3262735 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTAAACCCTTGGC+TGG | - | chr3_4:3262854-3262873 | None:intergenic | 30.0% |
| TCATAGAACAATGTTAGAAG+GGG | + | chr3_4:3262910-3262929 | Msa0485590:intron | 30.0% | |
| !!! | CCATTTGTGCTTTTTTTTTG+TGG | - | chr3_4:3262944-3262963 | None:intergenic | 30.0% |
| ! | CCACAAAAAAAAAGCACAAA+TGG | + | chr3_4:3262941-3262960 | Msa0485590:intron | 30.0% |
| ! | AAAAGCACAAATGGAGATTT+AGG | + | chr3_4:3262950-3262969 | Msa0485590:intron | 30.0% |
| TAATTCACAAATGCAATACG+AGG | + | chr3_4:3262973-3262992 | Msa0485590:intron | 30.0% | |
| CAATAAGCTAGTAAAACTAG+TGG | - | chr3_4:3263222-3263241 | None:intergenic | 30.0% | |
| !!! | CACTAGTTTTACTAGCTTAT+TGG | + | chr3_4:3263220-3263239 | Msa0485590:intron | 30.0% |
| CTCATAACAATAGCAAAAGT+TGG | - | chr3_4:3261939-3261958 | None:intergenic | 30.0% | |
| TGTTATGAGCAATATGATTG+AGG | + | chr3_4:3261950-3261969 | Msa0485590:CDS | 30.0% | |
| TCACTTCTTTCATTGTTGAA+TGG | + | chr3_4:3262382-3262401 | Msa0485590:intron | 30.0% | |
| TTCTTTCATTGTTGAATGGA+GGG | + | chr3_4:3262386-3262405 | Msa0485590:intron | 30.0% | |
| !! | AATTTGCTAGAACAAGAAGA+GGG | - | chr3_4:3262437-3262456 | None:intergenic | 30.0% |
| !! | AAATTTGCTAGAACAAGAAG+AGG | - | chr3_4:3262438-3262457 | None:intergenic | 30.0% |
| TACCAAAGTTAGAATGTAAG+TGG | - | chr3_4:3262587-3262606 | None:intergenic | 30.0% | |
| AAAATAACACATTCAATGCC+AGG | - | chr3_4:3262716-3262735 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTAAACCCTTGGC+TGG | - | chr3_4:3262854-3262873 | None:intergenic | 30.0% |
| TCATAGAACAATGTTAGAAG+GGG | + | chr3_4:3262910-3262929 | Msa0485590:intron | 30.0% | |
| !!! | CCATTTGTGCTTTTTTTTTG+TGG | - | chr3_4:3262944-3262963 | None:intergenic | 30.0% |
| ! | CCACAAAAAAAAAGCACAAA+TGG | + | chr3_4:3262941-3262960 | Msa0485590:intron | 30.0% |
| ! | AAAAGCACAAATGGAGATTT+AGG | + | chr3_4:3262950-3262969 | Msa0485590:intron | 30.0% |
| TAATTCACAAATGCAATACG+AGG | + | chr3_4:3262973-3262992 | Msa0485590:intron | 30.0% | |
| CAATAAGCTAGTAAAACTAG+TGG | - | chr3_4:3263222-3263241 | None:intergenic | 30.0% | |
| !!! | CACTAGTTTTACTAGCTTAT+TGG | + | chr3_4:3263220-3263239 | Msa0485590:intron | 30.0% |
| TCTGTTCTTTCTGGATTCAT+TGG | + | chr3_4:3261912-3261931 | Msa0485590:CDS | 35.0% | |
| CTATAGAAACTATGCATCCA+TGG | + | chr3_4:3261980-3261999 | Msa0485590:CDS | 35.0% | |
| ATCCATGGAGAAGAAAACTA+AGG | + | chr3_4:3261995-3262014 | Msa0485590:CDS | 35.0% | |
| !! | TTCCTTAGTTTTCTTCTCCA+TGG | - | chr3_4:3262000-3262019 | None:intergenic | 35.0% |
| CCAACTTCATTCCTCAAAAT+AGG | - | chr3_4:3262237-3262256 | None:intergenic | 35.0% | |
| !! | CCTATTTTGAGGAATGAAGT+TGG | + | chr3_4:3262234-3262253 | Msa0485590:intron | 35.0% |
| !! | TTTTGAGGAATGAAGTTGGA+TGG | + | chr3_4:3262238-3262257 | Msa0485590:intron | 35.0% |
| TACTGATATCCTCTTAGCAA+CGG | - | chr3_4:3262337-3262356 | None:intergenic | 35.0% | |
| CTTCTTTCATTGTTGAATGG+AGG | + | chr3_4:3262385-3262404 | Msa0485590:intron | 35.0% | |
| ! | TGTTCTAGCAAATTTTGCTC+AGG | + | chr3_4:3262443-3262462 | Msa0485590:intron | 35.0% |
| ! | GTTCTAGCAAATTTTGCTCA+GGG | + | chr3_4:3262444-3262463 | Msa0485590:intron | 35.0% |
| TCTTGTCTTGATCAGACAAT+CGG | - | chr3_4:3262564-3262583 | None:intergenic | 35.0% | |
| GACCACTTACATTCTAACTT+TGG | + | chr3_4:3262582-3262601 | Msa0485590:intron | 35.0% | |
| AAATTGACCACTTACATTCC+TGG | + | chr3_4:3262695-3262714 | Msa0485590:intron | 35.0% | |
| TGTACACAATAGACCTTTCA+TGG | + | chr3_4:3263030-3263049 | Msa0485590:intron | 35.0% | |
| ! | TGCTATTAGCTTACCATGAA+AGG | - | chr3_4:3263046-3263065 | None:intergenic | 35.0% |
| CATGGTAAGCTAATAGCAAT+TGG | + | chr3_4:3263048-3263067 | Msa0485590:intron | 35.0% | |
| !! | AATGCCACTTTAAGCTCATT+TGG | + | chr3_4:3263194-3263213 | Msa0485590:intron | 35.0% |
| TATTGGTGAATGTGTTGTCA+TGG | + | chr3_4:3263237-3263256 | Msa0485590:intron | 35.0% | |
| ! | TCGCAAGTATGTTTTATGAG+TGG | + | chr3_4:3263287-3263306 | Msa0485590:intron | 35.0% |
| ! | GTATGTTTTATGAGTGGAGT+TGG | + | chr3_4:3263293-3263312 | Msa0485590:intron | 35.0% |
| !!! | AAAGGTTTAGGGAGGTTTTT+TGG | + | chr3_4:3263472-3263491 | Msa0485590:CDS | 35.0% |
| !!! | AAGGTTTAGGGAGGTTTTTT+GGG | + | chr3_4:3263473-3263492 | Msa0485590:CDS | 35.0% |
| TCTGTTCTTTCTGGATTCAT+TGG | + | chr3_4:3261912-3261931 | Msa0485590:CDS | 35.0% | |
| CTATAGAAACTATGCATCCA+TGG | + | chr3_4:3261980-3261999 | Msa0485590:CDS | 35.0% | |
| ATCCATGGAGAAGAAAACTA+AGG | + | chr3_4:3261995-3262014 | Msa0485590:CDS | 35.0% | |
| !! | TTCCTTAGTTTTCTTCTCCA+TGG | - | chr3_4:3262000-3262019 | None:intergenic | 35.0% |
| CCAACTTCATTCCTCAAAAT+AGG | - | chr3_4:3262237-3262256 | None:intergenic | 35.0% | |
| !! | CCTATTTTGAGGAATGAAGT+TGG | + | chr3_4:3262234-3262253 | Msa0485590:intron | 35.0% |
| !! | TTTTGAGGAATGAAGTTGGA+TGG | + | chr3_4:3262238-3262257 | Msa0485590:intron | 35.0% |
| TACTGATATCCTCTTAGCAA+CGG | - | chr3_4:3262337-3262356 | None:intergenic | 35.0% | |
| CTTCTTTCATTGTTGAATGG+AGG | + | chr3_4:3262385-3262404 | Msa0485590:intron | 35.0% | |
| ! | TGTTCTAGCAAATTTTGCTC+AGG | + | chr3_4:3262443-3262462 | Msa0485590:intron | 35.0% |
| ! | GTTCTAGCAAATTTTGCTCA+GGG | + | chr3_4:3262444-3262463 | Msa0485590:intron | 35.0% |
| TCTTGTCTTGATCAGACAAT+CGG | - | chr3_4:3262564-3262583 | None:intergenic | 35.0% | |
| GACCACTTACATTCTAACTT+TGG | + | chr3_4:3262582-3262601 | Msa0485590:intron | 35.0% | |
| AAATTGACCACTTACATTCC+TGG | + | chr3_4:3262695-3262714 | Msa0485590:intron | 35.0% | |
| TGTACACAATAGACCTTTCA+TGG | + | chr3_4:3263030-3263049 | Msa0485590:intron | 35.0% | |
| ! | TGCTATTAGCTTACCATGAA+AGG | - | chr3_4:3263046-3263065 | None:intergenic | 35.0% |
| CATGGTAAGCTAATAGCAAT+TGG | + | chr3_4:3263048-3263067 | Msa0485590:intron | 35.0% | |
| !! | AATGCCACTTTAAGCTCATT+TGG | + | chr3_4:3263194-3263213 | Msa0485590:intron | 35.0% |
| TATTGGTGAATGTGTTGTCA+TGG | + | chr3_4:3263237-3263256 | Msa0485590:intron | 35.0% | |
| ! | TCGCAAGTATGTTTTATGAG+TGG | + | chr3_4:3263287-3263306 | Msa0485590:intron | 35.0% |
| ! | GTATGTTTTATGAGTGGAGT+TGG | + | chr3_4:3263293-3263312 | Msa0485590:intron | 35.0% |
| !!! | AAAGGTTTAGGGAGGTTTTT+TGG | + | chr3_4:3263472-3263491 | Msa0485590:CDS | 35.0% |
| !!! | AAGGTTTAGGGAGGTTTTTT+GGG | + | chr3_4:3263473-3263492 | Msa0485590:CDS | 35.0% |
| ACTGCTTCCATTATCGAGTA+AGG | - | chr3_4:3261888-3261907 | None:intergenic | 40.0% | |
| !! | TACTCGATAATGGAAGCAGT+TGG | + | chr3_4:3261888-3261907 | Msa0485590:CDS | 40.0% |
| ! | GTTTTCATATACACAGGTGC+TGG | + | chr3_4:3262023-3262042 | Msa0485590:CDS | 40.0% |
| AGGGTTTCTTTACTCATCCT+TGG | + | chr3_4:3262405-3262424 | Msa0485590:intron | 40.0% | |
| TTCAATGCCAGGAATGTAAG+TGG | - | chr3_4:3262705-3262724 | None:intergenic | 40.0% | |
| GAGATCGAAAGCAGCATTAA+TGG | + | chr3_4:3262821-3262840 | Msa0485590:intron | 40.0% | |
| ! | AGAGGTACAAAACGTCTCAA+AGG | + | chr3_4:3262885-3262904 | Msa0485590:intron | 40.0% |
| GGTACCAAATGAGCTTAAAG+TGG | - | chr3_4:3263201-3263220 | None:intergenic | 40.0% | |
| ACTGCTTCCATTATCGAGTA+AGG | - | chr3_4:3261888-3261907 | None:intergenic | 40.0% | |
| !! | TACTCGATAATGGAAGCAGT+TGG | + | chr3_4:3261888-3261907 | Msa0485590:CDS | 40.0% |
| ! | GTTTTCATATACACAGGTGC+TGG | + | chr3_4:3262023-3262042 | Msa0485590:CDS | 40.0% |
| AGGGTTTCTTTACTCATCCT+TGG | + | chr3_4:3262405-3262424 | Msa0485590:intron | 40.0% | |
| TTCAATGCCAGGAATGTAAG+TGG | - | chr3_4:3262705-3262724 | None:intergenic | 40.0% | |
| GAGATCGAAAGCAGCATTAA+TGG | + | chr3_4:3262821-3262840 | Msa0485590:intron | 40.0% | |
| ! | AGAGGTACAAAACGTCTCAA+AGG | + | chr3_4:3262885-3262904 | Msa0485590:intron | 40.0% |
| GGTACCAAATGAGCTTAAAG+TGG | - | chr3_4:3263201-3263220 | None:intergenic | 40.0% | |
| ATTATCGAGTAAGGCCACTC+GGG | - | chr3_4:3261879-3261898 | None:intergenic | 45.0% | |
| CATTATCGAGTAAGGCCACT+CGG | - | chr3_4:3261880-3261899 | None:intergenic | 45.0% | |
| GCAGTTGGATCTGTTCTTTC+TGG | + | chr3_4:3261903-3261922 | Msa0485590:CDS | 45.0% | |
| TGAAGTTGGATGGTTCGATG+AGG | + | chr3_4:3262248-3262267 | Msa0485590:intron | 45.0% | |
| !! | CTTTACATCAGAGGCATCAG+TGG | - | chr3_4:3262310-3262329 | None:intergenic | 45.0% |
| TGATATCCTCTTAGCAACGG+CGG | - | chr3_4:3262334-3262353 | None:intergenic | 45.0% | |
| CAAGAAGAGGGAAAGTTCCA+AGG | - | chr3_4:3262425-3262444 | None:intergenic | 45.0% | |
| TAATGGTTCAACACCAGCCA+AGG | + | chr3_4:3262838-3262857 | Msa0485590:intron | 45.0% | |
| AATGGTTCAACACCAGCCAA+GGG | + | chr3_4:3262839-3262858 | Msa0485590:intron | 45.0% | |
| TCAACACAAGTGGAGCTATC+TGG | + | chr3_4:3262999-3263018 | Msa0485590:intron | 45.0% | |
| TGGTGAATGTGTTGTCATGG+AGG | + | chr3_4:3263240-3263259 | Msa0485590:intron | 45.0% | |
| TGAATGTGTTGTCATGGAGG+TGG | + | chr3_4:3263243-3263262 | Msa0485590:intron | 45.0% | |
| TTGTCATGGAGGTGGTTACT+TGG | + | chr3_4:3263251-3263270 | Msa0485590:intron | 45.0% | |
| AAAACAGCAGCACAACAGCA+AGG | - | chr3_4:3263356-3263375 | None:intergenic | 45.0% | |
| CCAGTCCAAGCAAAGGTTTA+GGG | + | chr3_4:3263461-3263480 | Msa0485590:CDS | 45.0% | |
| AACCTCCCTAAACCTTTGCT+TGG | - | chr3_4:3263469-3263488 | None:intergenic | 45.0% | |
| ATTATCGAGTAAGGCCACTC+GGG | - | chr3_4:3261879-3261898 | None:intergenic | 45.0% | |
| CATTATCGAGTAAGGCCACT+CGG | - | chr3_4:3261880-3261899 | None:intergenic | 45.0% | |
| GCAGTTGGATCTGTTCTTTC+TGG | + | chr3_4:3261903-3261922 | Msa0485590:CDS | 45.0% | |
| TGAAGTTGGATGGTTCGATG+AGG | + | chr3_4:3262248-3262267 | Msa0485590:intron | 45.0% | |
| !! | CTTTACATCAGAGGCATCAG+TGG | - | chr3_4:3262310-3262329 | None:intergenic | 45.0% |
| TGATATCCTCTTAGCAACGG+CGG | - | chr3_4:3262334-3262353 | None:intergenic | 45.0% | |
| CAAGAAGAGGGAAAGTTCCA+AGG | - | chr3_4:3262425-3262444 | None:intergenic | 45.0% | |
| TAATGGTTCAACACCAGCCA+AGG | + | chr3_4:3262838-3262857 | Msa0485590:intron | 45.0% | |
| AATGGTTCAACACCAGCCAA+GGG | + | chr3_4:3262839-3262858 | Msa0485590:intron | 45.0% | |
| TCAACACAAGTGGAGCTATC+TGG | + | chr3_4:3262999-3263018 | Msa0485590:intron | 45.0% | |
| TGGTGAATGTGTTGTCATGG+AGG | + | chr3_4:3263240-3263259 | Msa0485590:intron | 45.0% | |
| TGAATGTGTTGTCATGGAGG+TGG | + | chr3_4:3263243-3263262 | Msa0485590:intron | 45.0% | |
| TTGTCATGGAGGTGGTTACT+TGG | + | chr3_4:3263251-3263270 | Msa0485590:intron | 45.0% | |
| AAAACAGCAGCACAACAGCA+AGG | - | chr3_4:3263356-3263375 | None:intergenic | 45.0% | |
| CCAGTCCAAGCAAAGGTTTA+GGG | + | chr3_4:3263461-3263480 | Msa0485590:CDS | 45.0% | |
| AACCTCCCTAAACCTTTGCT+TGG | - | chr3_4:3263469-3263488 | None:intergenic | 45.0% | |
| ! | CGAGTGGCCTTACTCGATAA+TGG | + | chr3_4:3261878-3261897 | Msa0485590:CDS | 50.0% |
| GCTGGAAGAATGATGCTTGC+AGG | + | chr3_4:3262041-3262060 | Msa0485590:CDS | 50.0% | |
| ! | AACGGCGGACTTTACATCAG+AGG | - | chr3_4:3262319-3262338 | None:intergenic | 50.0% |
| TAAAGTCCGCCGTTGCTAAG+AGG | + | chr3_4:3262325-3262344 | Msa0485590:intron | 50.0% | |
| ! | TACGAGGTGCTCAACACAAG+TGG | + | chr3_4:3262989-3263008 | Msa0485590:intron | 50.0% |
| TGCTGTTCTGCTGTCATGAC+AGG | + | chr3_4:3263412-3263431 | Msa0485590:intron | 50.0% | |
| GCCAGTCCAAGCAAAGGTTT+AGG | + | chr3_4:3263460-3263479 | Msa0485590:CDS | 50.0% | |
| CCCTAAACCTTTGCTTGGAC+TGG | - | chr3_4:3263464-3263483 | None:intergenic | 50.0% | |
| GTCCAAGCAAAGGTTTAGGG+AGG | + | chr3_4:3263464-3263483 | Msa0485590:CDS | 50.0% | |
| !!! | AGGGAGGTTTTTTGGGTTCC+TGG | + | chr3_4:3263480-3263499 | Msa0485590:CDS | 50.0% |
| ! | CGAGTGGCCTTACTCGATAA+TGG | + | chr3_4:3261878-3261897 | Msa0485590:CDS | 50.0% |
| GCTGGAAGAATGATGCTTGC+AGG | + | chr3_4:3262041-3262060 | Msa0485590:CDS | 50.0% | |
| ! | AACGGCGGACTTTACATCAG+AGG | - | chr3_4:3262319-3262338 | None:intergenic | 50.0% |
| TAAAGTCCGCCGTTGCTAAG+AGG | + | chr3_4:3262325-3262344 | Msa0485590:intron | 50.0% | |
| ! | TACGAGGTGCTCAACACAAG+TGG | + | chr3_4:3262989-3263008 | Msa0485590:intron | 50.0% |
| TGCTGTTCTGCTGTCATGAC+AGG | + | chr3_4:3263412-3263431 | Msa0485590:intron | 50.0% | |
| GCCAGTCCAAGCAAAGGTTT+AGG | + | chr3_4:3263460-3263479 | Msa0485590:CDS | 50.0% | |
| CCCTAAACCTTTGCTTGGAC+TGG | - | chr3_4:3263464-3263483 | None:intergenic | 50.0% | |
| GTCCAAGCAAAGGTTTAGGG+AGG | + | chr3_4:3263464-3263483 | Msa0485590:CDS | 50.0% | |
| !!! | AGGGAGGTTTTTTGGGTTCC+TGG | + | chr3_4:3263480-3263499 | Msa0485590:CDS | 50.0% |
| !! | CATCAGAGGCATCAGTGGCT+AGG | - | chr3_4:3262305-3262324 | None:intergenic | 55.0% |
| ! | TTTTCCCGTCCCAGCAGTGT+TGG | + | chr3_4:3263372-3263391 | Msa0485590:intron | 55.0% |
| TGAGACCAACACTGCTGGGA+CGG | - | chr3_4:3263380-3263399 | None:intergenic | 55.0% | |
| ACGGTGAGACCAACACTGCT+GGG | - | chr3_4:3263384-3263403 | None:intergenic | 55.0% | |
| GCAGAACAGCAAAGCTGCCA+CGG | - | chr3_4:3263403-3263422 | None:intergenic | 55.0% | |
| !! | CATCAGAGGCATCAGTGGCT+AGG | - | chr3_4:3262305-3262324 | None:intergenic | 55.0% |
| ! | TTTTCCCGTCCCAGCAGTGT+TGG | + | chr3_4:3263372-3263391 | Msa0485590:intron | 55.0% |
| TGAGACCAACACTGCTGGGA+CGG | - | chr3_4:3263380-3263399 | None:intergenic | 55.0% | |
| ACGGTGAGACCAACACTGCT+GGG | - | chr3_4:3263384-3263403 | None:intergenic | 55.0% | |
| GCAGAACAGCAAAGCTGCCA+CGG | - | chr3_4:3263403-3263422 | None:intergenic | 55.0% | |
| CAGCAGCTAGTTAGCGCAGG+AGG | - | chr3_4:3263333-3263352 | None:intergenic | 60.0% | |
| AGGCAGCAGCTAGTTAGCGC+AGG | - | chr3_4:3263336-3263355 | None:intergenic | 60.0% | |
| GAGACCAACACTGCTGGGAC+GGG | - | chr3_4:3263379-3263398 | None:intergenic | 60.0% | |
| CACGGTGAGACCAACACTGC+TGG | - | chr3_4:3263385-3263404 | None:intergenic | 60.0% | |
| !! | CAGCAGTGTTGGTCTCACCG+TGG | + | chr3_4:3263383-3263402 | Msa0485590:intron | 60.0% |
| GTCTGCGCCAGTCCAAGCAA+AGG | + | chr3_4:3263454-3263473 | Msa0485590:CDS | 60.0% | |
| CAGCAGCTAGTTAGCGCAGG+AGG | - | chr3_4:3263333-3263352 | None:intergenic | 60.0% | |
| AGGCAGCAGCTAGTTAGCGC+AGG | - | chr3_4:3263336-3263355 | None:intergenic | 60.0% | |
| GAGACCAACACTGCTGGGAC+GGG | - | chr3_4:3263379-3263398 | None:intergenic | 60.0% | |
| CACGGTGAGACCAACACTGC+TGG | - | chr3_4:3263385-3263404 | None:intergenic | 60.0% | |
| !! | CAGCAGTGTTGGTCTCACCG+TGG | + | chr3_4:3263383-3263402 | Msa0485590:intron | 60.0% |
| GTCTGCGCCAGTCCAAGCAA+AGG | + | chr3_4:3263454-3263473 | Msa0485590:CDS | 60.0% | |
| TAGCGCAGGAGGCAGAGACG+TGG | - | chr3_4:3263322-3263341 | None:intergenic | 65.0% | |
| TAGCGCAGGAGGCAGAGACG+TGG | - | chr3_4:3263322-3263341 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 3261867 | 3263507 | 3261867 | ID=Msa0485590;Name=Msa0485590 |
| chr3_4 | mRNA | 3261867 | 3263507 | 3261867 | ID=Msa0485590-mRNA-1;Parent=Msa0485590;Name=Msa0485590-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0|0|1|0|0.5|2|0|90 |
| chr3_4 | exon | 3261867 | 3262062 | 3261867 | ID=Msa0485590-mRNA-1:exon:1115;Parent=Msa0485590-mRNA-1 |
| chr3_4 | exon | 3263434 | 3263507 | 3263434 | ID=Msa0485590-mRNA-1:exon:1116;Parent=Msa0485590-mRNA-1 |
| chr3_4 | CDS | 3261867 | 3262062 | 3261867 | ID=Msa0485590-mRNA-1:cds;Parent=Msa0485590-mRNA-1 |
| chr3_4 | CDS | 3263434 | 3263507 | 3263434 | ID=Msa0485590-mRNA-1:cds;Parent=Msa0485590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
