Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487830 | XP_024635996.2 | 85.714 | 63 | 7 | 1 | 38 | 98 | 174 | 236 | 4.77e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487830 | A0A396II26 | 85.714 | 63 | 7 | 1 | 38 | 98 | 174 | 236 | 2.28e-25 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0392140 | Msa0487830 | 0.836722 | 7.923639e-57 | -8.615850e-47 |
| Msa0393590 | Msa0487830 | 0.818588 | 1.812082e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487830 | MtrunA17_Chr3g0078681 | 85.714 | 63 | 7 | 1 | 38 | 98 | 174 | 236 | 4.39e-29 | 108 |
| Msa0487830 | MtrunA17_Chr3g0078731 | 85.714 | 63 | 7 | 1 | 38 | 98 | 160 | 222 | 7.60e-29 | 108 |
| Msa0487830 | MtrunA17_Chr3g0078731 | 42.991 | 107 | 33 | 5 | 52 | 147 | 287 | 376 | 5.79e-16 | 73.2 |
| Msa0487830 | MtrunA17_Chr3g0078891 | 85.714 | 63 | 7 | 1 | 38 | 98 | 160 | 222 | 1.30e-28 | 108 |
| Msa0487830 | MtrunA17_Chr3g0078891 | 38.931 | 131 | 48 | 6 | 28 | 147 | 263 | 372 | 4.37e-15 | 70.9 |
| Msa0487830 | MtrunA17_Chr8g0364381 | 61.905 | 84 | 30 | 2 | 38 | 120 | 214 | 296 | 2.35e-22 | 91.7 |
| Msa0487830 | MtrunA17_Chr3g0077781 | 70.968 | 62 | 15 | 2 | 39 | 98 | 162 | 222 | 8.80e-18 | 78.2 |
| Msa0487830 | MtrunA17_Chr2g0331741 | 63.934 | 61 | 21 | 1 | 38 | 98 | 224 | 283 | 9.66e-16 | 72.8 |
| Msa0487830 | MtrunA17_Chr4g0070811 | 51.899 | 79 | 36 | 2 | 20 | 98 | 46 | 122 | 2.41e-13 | 65.5 |
| Msa0487830 | MtrunA17_Chr3g0078191 | 62.069 | 58 | 21 | 1 | 41 | 98 | 195 | 251 | 3.90e-13 | 65.5 |
| Msa0487830 | MtrunA17_Chr2g0325081 | 60.000 | 60 | 22 | 2 | 39 | 98 | 161 | 218 | 1.59e-12 | 63.5 |
| Msa0487830 | MtrunA17_Chr3g0077791 | 58.462 | 65 | 19 | 2 | 41 | 98 | 166 | 229 | 8.22e-12 | 61.2 |
| Msa0487830 | MtrunA17_Chr7g0269551 | 42.169 | 83 | 36 | 3 | 38 | 110 | 4 | 84 | 8.36e-11 | 56.2 |
| Msa0487830 | MtrunA17_Chr3g0085901 | 45.556 | 90 | 46 | 3 | 41 | 129 | 154 | 241 | 8.68e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAATAAGTCCACAATTT+TGG | 0.218541 | 3_4:+6944877 | None:intergenic |
| CTCCTCTTTAGCATTCAAAA+AGG | 0.294920 | 3_4:+6946133 | None:intergenic |
| TATTACGTCGCCTCTTACTT+TGG | 0.330096 | 3_4:+6946207 | None:intergenic |
| CAACATGTTAAATGTGGAAA+AGG | 0.367426 | 3_4:+6945473 | None:intergenic |
| TCATTGACCACTGTGTACTT+AGG | 0.406320 | 3_4:-6945440 | Msa0487830:CDS |
| AACATGTTAAATGTGGAAAA+GGG | 0.410583 | 3_4:+6945474 | None:intergenic |
| CATTGACCACTGTGTACTTA+GGG | 0.410708 | 3_4:-6945439 | Msa0487830:CDS |
| ACCATCATCCTTACAACAAA+AGG | 0.436969 | 3_4:+6945509 | None:intergenic |
| AGAGACAGAGTGGTTAATGC+TGG | 0.454587 | 3_4:+6945543 | None:intergenic |
| TCGGAACGCTTCTATATTCA+AGG | 0.457921 | 3_4:+6944916 | None:intergenic |
| TAGAAGCGTTCCGACCTTCA+TGG | 0.507378 | 3_4:-6944907 | Msa0487830:CDS |
| AGGGAGCTCGCGATGAATGC+GGG | 0.513953 | 3_4:+6944958 | None:intergenic |
| TAGAGTTAAATTGACAAGCT+TGG | 0.516304 | 3_4:+6945386 | None:intergenic |
| TCAAAACTCACCCTCGGCAA+AGG | 0.527468 | 3_4:-6944855 | Msa0487830:CDS |
| TATGTAAAGGAGAACACAAT+CGG | 0.536532 | 3_4:+6946160 | None:intergenic |
| AGAAGCGTTCCGACCTTCAT+GGG | 0.541249 | 3_4:-6944906 | Msa0487830:CDS |
| GAGACAGAGTGGTTAATGCT+GGG | 0.543671 | 3_4:+6945544 | None:intergenic |
| GACTTCAAGTTACAGAAGGA+AGG | 0.544715 | 3_4:+6944938 | None:intergenic |
| AGTATTCAACATGTTAAATG+TGG | 0.563064 | 3_4:+6945467 | None:intergenic |
| ATGGGTACCTACCAAAATTG+TGG | 0.570983 | 3_4:-6944888 | Msa0487830:CDS |
| CAAGGACTTCAAGTTACAGA+AGG | 0.571526 | 3_4:+6944934 | None:intergenic |
| AGACACGAAGCCAAAGTAAG+AGG | 0.573407 | 3_4:-6946217 | Msa0487830:CDS |
| ACTTCAAGTTACAGAAGGAA+GGG | 0.579700 | 3_4:+6944939 | None:intergenic |
| GGCGACGTAATAAACAAGAC+AGG | 0.590500 | 3_4:-6946196 | Msa0487830:CDS |
| ATTGCTTCAAAACTCACCCT+CGG | 0.602621 | 3_4:-6944861 | Msa0487830:CDS |
| AAGGGAGCTCGCGATGAATG+CGG | 0.614458 | 3_4:+6944957 | None:intergenic |
| CATCCTTACAACAAAAGGAA+AGG | 0.614509 | 3_4:+6945514 | None:intergenic |
| ACATGTTAAATGTGGAAAAG+GGG | 0.614594 | 3_4:+6945475 | None:intergenic |
| GCTTGGTACATGAAATGCGA+AGG | 0.615082 | 3_4:+6945403 | None:intergenic |
| TGGTAGGTACCCATGAAGGT+CGG | 0.654727 | 3_4:+6944897 | None:intergenic |
| GATGATGTGAACCTTTGCCG+AGG | 0.661060 | 3_4:+6944844 | None:intergenic |
| AAGGTGCTTTAGAGACAGAG+TGG | 0.663743 | 3_4:+6945533 | None:intergenic |
| ATGATGTGAACCTTTGCCGA+GGG | 0.688283 | 3_4:+6944845 | None:intergenic |
| ATTGACCACTGTGTACTTAG+GGG | 0.688391 | 3_4:-6945438 | Msa0487830:CDS |
| CATTACCCCTAAGTACACAG+TGG | 0.797214 | 3_4:+6945433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAATAGATTAAATATTT+GGG | + | chr3_4:6945915-6945934 | None:intergenic | 10.0% |
| !! | ATTTGAATAGATTAAATATT+TGG | + | chr3_4:6945916-6945935 | None:intergenic | 10.0% |
| !!! | TGTAATTTTAAATTTTATCA+AGG | - | chr3_4:6946030-6946049 | Msa0487830:intron | 10.0% |
| !! | TTTGAATAGATTAAATATTT+GGG | + | chr3_4:6945915-6945934 | None:intergenic | 10.0% |
| !! | ATTTGAATAGATTAAATATT+TGG | + | chr3_4:6945916-6945935 | None:intergenic | 10.0% |
| !!! | TGTAATTTTAAATTTTATCA+AGG | - | chr3_4:6946030-6946049 | Msa0487830:intron | 10.0% |
| !! | ATTCTATAATCTTTAGGTAT+AGG | + | chr3_4:6945320-6945339 | None:intergenic | 20.0% |
| !! | TACTAATATTGAATCATTGA+CGG | - | chr3_4:6945949-6945968 | Msa0487830:intron | 20.0% |
| !! | ATTCTATAATCTTTAGGTAT+AGG | + | chr3_4:6945320-6945339 | None:intergenic | 20.0% |
| !! | TACTAATATTGAATCATTGA+CGG | - | chr3_4:6945949-6945968 | Msa0487830:intron | 20.0% |
| ! | CTTAACACTTAATGTAATAG+TGG | + | chr3_4:6945004-6945023 | None:intergenic | 25.0% |
| ! | AACATGTTAAATGTGGAAAA+GGG | + | chr3_4:6945588-6945607 | None:intergenic | 25.0% |
| ! | AGTATTCAACATGTTAAATG+TGG | + | chr3_4:6945595-6945614 | None:intergenic | 25.0% |
| !!! | CATATGTATTGTTGTTTCTA+TGG | - | chr3_4:6945696-6945715 | Msa0487830:intron | 25.0% |
| ! | AATTATAGTCCAAAACTCTT+TGG | - | chr3_4:6945816-6945835 | Msa0487830:intron | 25.0% |
| ! | ATTATAGTCCAAAACTCTTT+GGG | - | chr3_4:6945817-6945836 | Msa0487830:intron | 25.0% |
| !! | TTGTTTGATAGTAGAGAAAA+TGG | + | chr3_4:6945850-6945869 | None:intergenic | 25.0% |
| ! | TTTACACTATTACATGTGTT+TGG | - | chr3_4:6945883-6945902 | Msa0487830:intron | 25.0% |
| ! | CTTAACACTTAATGTAATAG+TGG | + | chr3_4:6945004-6945023 | None:intergenic | 25.0% |
| ! | AACATGTTAAATGTGGAAAA+GGG | + | chr3_4:6945588-6945607 | None:intergenic | 25.0% |
| ! | AGTATTCAACATGTTAAATG+TGG | + | chr3_4:6945595-6945614 | None:intergenic | 25.0% |
| !!! | CATATGTATTGTTGTTTCTA+TGG | - | chr3_4:6945696-6945715 | Msa0487830:intron | 25.0% |
| ! | AATTATAGTCCAAAACTCTT+TGG | - | chr3_4:6945816-6945835 | Msa0487830:intron | 25.0% |
| ! | ATTATAGTCCAAAACTCTTT+GGG | - | chr3_4:6945817-6945836 | Msa0487830:intron | 25.0% |
| !! | TTGTTTGATAGTAGAGAAAA+TGG | + | chr3_4:6945850-6945869 | None:intergenic | 25.0% |
| ! | TTTACACTATTACATGTGTT+TGG | - | chr3_4:6945883-6945902 | Msa0487830:intron | 25.0% |
| TATGTAAAGGAGAACACAAT+CGG | + | chr3_4:6944902-6944921 | None:intergenic | 30.0% | |
| ! | TCAAAAAGGAGAGTATGTAA+AGG | + | chr3_4:6944915-6944934 | None:intergenic | 30.0% |
| ! | CTTGCATTTTATCCAAAAGA+TGG | - | chr3_4:6944956-6944975 | Msa0487830:CDS | 30.0% |
| !!! | TTGCTGGCTTTTAAAAATCA+CGG | + | chr3_4:6945110-6945129 | None:intergenic | 30.0% |
| !! | GATTTTTAAAAGCCAGCAAT+TGG | - | chr3_4:6945111-6945130 | Msa0487830:intron | 30.0% |
| TATGACTGATATAATGACTC+TGG | + | chr3_4:6945296-6945315 | None:intergenic | 30.0% | |
| AGGCGTATTCTATAATCTTT+AGG | + | chr3_4:6945326-6945345 | None:intergenic | 30.0% | |
| !! | TGTAATTGATTCGAAAGTGT+TGG | + | chr3_4:6945362-6945381 | None:intergenic | 30.0% |
| !!! | TCTTACTGGTATCGATTTTA+TGG | - | chr3_4:6945440-6945459 | Msa0487830:CDS | 30.0% |
| ACATGTTAAATGTGGAAAAG+GGG | + | chr3_4:6945587-6945606 | None:intergenic | 30.0% | |
| CAACATGTTAAATGTGGAAA+AGG | + | chr3_4:6945589-6945608 | None:intergenic | 30.0% | |
| TAGAGTTAAATTGACAAGCT+TGG | + | chr3_4:6945676-6945695 | None:intergenic | 30.0% | |
| !!! | ATCGATTTTGAAATTGGCTT+TGG | + | chr3_4:6945742-6945761 | None:intergenic | 30.0% |
| ! | GCCAATTTCAAAATCGATTT+CGG | - | chr3_4:6945744-6945763 | Msa0487830:intron | 30.0% |
| !!! | TCCGAAATCGATTTTGAAAT+TGG | + | chr3_4:6945748-6945767 | None:intergenic | 30.0% |
| AAAACAAAGGAATGAAGTGT+TGG | + | chr3_4:6945786-6945805 | None:intergenic | 30.0% | |
| !! | TATAAAATGCAGCATTGATG+TGG | + | chr3_4:6946009-6946028 | None:intergenic | 30.0% |
| !! | AATAAGTCCACAATTTTGGT+AGG | + | chr3_4:6946181-6946200 | None:intergenic | 30.0% |
| ! | AAGCAATAAGTCCACAATTT+TGG | + | chr3_4:6946185-6946204 | None:intergenic | 30.0% |
| TATGTAAAGGAGAACACAAT+CGG | + | chr3_4:6944902-6944921 | None:intergenic | 30.0% | |
| ! | TCAAAAAGGAGAGTATGTAA+AGG | + | chr3_4:6944915-6944934 | None:intergenic | 30.0% |
| ! | CTTGCATTTTATCCAAAAGA+TGG | - | chr3_4:6944956-6944975 | Msa0487830:CDS | 30.0% |
| !!! | TTGCTGGCTTTTAAAAATCA+CGG | + | chr3_4:6945110-6945129 | None:intergenic | 30.0% |
| !! | GATTTTTAAAAGCCAGCAAT+TGG | - | chr3_4:6945111-6945130 | Msa0487830:intron | 30.0% |
| TATGACTGATATAATGACTC+TGG | + | chr3_4:6945296-6945315 | None:intergenic | 30.0% | |
| AGGCGTATTCTATAATCTTT+AGG | + | chr3_4:6945326-6945345 | None:intergenic | 30.0% | |
| !! | TGTAATTGATTCGAAAGTGT+TGG | + | chr3_4:6945362-6945381 | None:intergenic | 30.0% |
| !!! | TCTTACTGGTATCGATTTTA+TGG | - | chr3_4:6945440-6945459 | Msa0487830:CDS | 30.0% |
| ACATGTTAAATGTGGAAAAG+GGG | + | chr3_4:6945587-6945606 | None:intergenic | 30.0% | |
| CAACATGTTAAATGTGGAAA+AGG | + | chr3_4:6945589-6945608 | None:intergenic | 30.0% | |
| TAGAGTTAAATTGACAAGCT+TGG | + | chr3_4:6945676-6945695 | None:intergenic | 30.0% | |
| !!! | ATCGATTTTGAAATTGGCTT+TGG | + | chr3_4:6945742-6945761 | None:intergenic | 30.0% |
| ! | GCCAATTTCAAAATCGATTT+CGG | - | chr3_4:6945744-6945763 | Msa0487830:intron | 30.0% |
| !!! | TCCGAAATCGATTTTGAAAT+TGG | + | chr3_4:6945748-6945767 | None:intergenic | 30.0% |
| AAAACAAAGGAATGAAGTGT+TGG | + | chr3_4:6945786-6945805 | None:intergenic | 30.0% | |
| !! | TATAAAATGCAGCATTGATG+TGG | + | chr3_4:6946009-6946028 | None:intergenic | 30.0% |
| !! | AATAAGTCCACAATTTTGGT+AGG | + | chr3_4:6946181-6946200 | None:intergenic | 30.0% |
| ! | AAGCAATAAGTCCACAATTT+TGG | + | chr3_4:6946185-6946204 | None:intergenic | 30.0% |
| ! | CTCCTTTTTGAATGCTAAAG+AGG | - | chr3_4:6944924-6944943 | Msa0487830:CDS | 35.0% |
| CTCCTCTTTAGCATTCAAAA+AGG | + | chr3_4:6944929-6944948 | None:intergenic | 35.0% | |
| ! | CTTTTTGAATGCTAAAGAGG+AGG | - | chr3_4:6944927-6944946 | Msa0487830:CDS | 35.0% |
| ! | CCATAGATTGATCCATCTTT+TGG | + | chr3_4:6944971-6944990 | None:intergenic | 35.0% |
| CCAAAAGATGGATCAATCTA+TGG | - | chr3_4:6944968-6944987 | Msa0487830:CDS | 35.0% | |
| TACCGACAAAATGCTTGTTT+GGG | - | chr3_4:6945032-6945051 | Msa0487830:intron | 35.0% | |
| ! | ATCCCAAACAAGCATTTTGT+CGG | + | chr3_4:6945037-6945056 | None:intergenic | 35.0% |
| TGCAAGCAAAAAAGCAAGTT+TGG | - | chr3_4:6945063-6945082 | Msa0487830:intron | 35.0% | |
| GCAAGCAAAAAAGCAAGTTT+GGG | - | chr3_4:6945064-6945083 | Msa0487830:intron | 35.0% | |
| CAAGCAAAAAAGCAAGTTTG+GGG | - | chr3_4:6945065-6945084 | Msa0487830:intron | 35.0% | |
| AAGCAAAAAAGCAAGTTTGG+GGG | - | chr3_4:6945066-6945085 | Msa0487830:intron | 35.0% | |
| ! | AAATCACGGCAAATTTGCTT+TGG | + | chr3_4:6945096-6945115 | None:intergenic | 35.0% |
| !!! | TTGGAGCTTTTGAGTTAAAG+TGG | - | chr3_4:6945130-6945149 | Msa0487830:intron | 35.0% |
| !!! | TGGAGCTTTTGAGTTAAAGT+GGG | - | chr3_4:6945131-6945150 | Msa0487830:intron | 35.0% |
| AGAAAAACTCTGTACCAAAC+AGG | - | chr3_4:6945184-6945203 | Msa0487830:intron | 35.0% | |
| ! | CTTTTGTCTTTTAGCCTGTT+TGG | + | chr3_4:6945201-6945220 | None:intergenic | 35.0% |
| GAAGAGACAACAACATAGAT+AGG | + | chr3_4:6945236-6945255 | None:intergenic | 35.0% | |
| CAAAACGAGAGAATGGATAT+CGG | + | chr3_4:6945271-6945290 | None:intergenic | 35.0% | |
| TGAGATGAAAAGAAACAGGA+CGG | + | chr3_4:6945402-6945421 | None:intergenic | 35.0% | |
| AGTGTGAGATGAAAAGAAAC+AGG | + | chr3_4:6945406-6945425 | None:intergenic | 35.0% | |
| !! | TTAACGTCTCTTAGTCTTAC+TGG | - | chr3_4:6945426-6945445 | Msa0487830:CDS | 35.0% |
| TGGAAATATTTGATGCGAAC+CGG | + | chr3_4:6945469-6945488 | None:intergenic | 35.0% | |
| AAAGACTGAGAATGAGAACA+TGG | + | chr3_4:6945489-6945508 | None:intergenic | 35.0% | |
| CATCCTTACAACAAAAGGAA+AGG | + | chr3_4:6945548-6945567 | None:intergenic | 35.0% | |
| !! | TCCTTTTGTTGTAAGGATGA+TGG | - | chr3_4:6945549-6945568 | Msa0487830:CDS | 35.0% |
| ACCATCATCCTTACAACAAA+AGG | + | chr3_4:6945553-6945572 | None:intergenic | 35.0% | |
| !! | TTTGAAATTGGCTTTGGTTG+TGG | + | chr3_4:6945736-6945755 | None:intergenic | 35.0% |
| !!! | CTTCATTCCTTTGTTTTCTC+TGG | - | chr3_4:6945789-6945808 | Msa0487830:intron | 35.0% |
| ATTAGCACCAGAGAAAACAA+AGG | + | chr3_4:6945799-6945818 | None:intergenic | 35.0% | |
| CTATTACATGTGTTTGGAGA+AGG | - | chr3_4:6945889-6945908 | Msa0487830:intron | 35.0% | |
| GGTCACTTATTATGTTCTCA+AGG | - | chr3_4:6945970-6945989 | Msa0487830:intron | 35.0% | |
| !! | CTAAGCAATGAGGAAGTATT+AGG | + | chr3_4:6946074-6946093 | None:intergenic | 35.0% |
| CTAATACTTCCTCATTGCTT+AGG | - | chr3_4:6946072-6946091 | Msa0487830:intron | 35.0% | |
| ! | ACTTCAAGTTACAGAAGGAA+GGG | + | chr3_4:6946123-6946142 | None:intergenic | 35.0% |
| ! | CTCCTTTTTGAATGCTAAAG+AGG | - | chr3_4:6944924-6944943 | Msa0487830:CDS | 35.0% |
| CTCCTCTTTAGCATTCAAAA+AGG | + | chr3_4:6944929-6944948 | None:intergenic | 35.0% | |
| ! | CTTTTTGAATGCTAAAGAGG+AGG | - | chr3_4:6944927-6944946 | Msa0487830:CDS | 35.0% |
| ! | CCATAGATTGATCCATCTTT+TGG | + | chr3_4:6944971-6944990 | None:intergenic | 35.0% |
| CCAAAAGATGGATCAATCTA+TGG | - | chr3_4:6944968-6944987 | Msa0487830:CDS | 35.0% | |
| TACCGACAAAATGCTTGTTT+GGG | - | chr3_4:6945032-6945051 | Msa0487830:intron | 35.0% | |
| ! | ATCCCAAACAAGCATTTTGT+CGG | + | chr3_4:6945037-6945056 | None:intergenic | 35.0% |
| TGCAAGCAAAAAAGCAAGTT+TGG | - | chr3_4:6945063-6945082 | Msa0487830:intron | 35.0% | |
| GCAAGCAAAAAAGCAAGTTT+GGG | - | chr3_4:6945064-6945083 | Msa0487830:intron | 35.0% | |
| CAAGCAAAAAAGCAAGTTTG+GGG | - | chr3_4:6945065-6945084 | Msa0487830:intron | 35.0% | |
| AAGCAAAAAAGCAAGTTTGG+GGG | - | chr3_4:6945066-6945085 | Msa0487830:intron | 35.0% | |
| ! | AAATCACGGCAAATTTGCTT+TGG | + | chr3_4:6945096-6945115 | None:intergenic | 35.0% |
| !!! | TTGGAGCTTTTGAGTTAAAG+TGG | - | chr3_4:6945130-6945149 | Msa0487830:intron | 35.0% |
| !!! | TGGAGCTTTTGAGTTAAAGT+GGG | - | chr3_4:6945131-6945150 | Msa0487830:intron | 35.0% |
| AGAAAAACTCTGTACCAAAC+AGG | - | chr3_4:6945184-6945203 | Msa0487830:intron | 35.0% | |
| ! | CTTTTGTCTTTTAGCCTGTT+TGG | + | chr3_4:6945201-6945220 | None:intergenic | 35.0% |
| GAAGAGACAACAACATAGAT+AGG | + | chr3_4:6945236-6945255 | None:intergenic | 35.0% | |
| CAAAACGAGAGAATGGATAT+CGG | + | chr3_4:6945271-6945290 | None:intergenic | 35.0% | |
| TGAGATGAAAAGAAACAGGA+CGG | + | chr3_4:6945402-6945421 | None:intergenic | 35.0% | |
| AGTGTGAGATGAAAAGAAAC+AGG | + | chr3_4:6945406-6945425 | None:intergenic | 35.0% | |
| !! | TTAACGTCTCTTAGTCTTAC+TGG | - | chr3_4:6945426-6945445 | Msa0487830:CDS | 35.0% |
| TGGAAATATTTGATGCGAAC+CGG | + | chr3_4:6945469-6945488 | None:intergenic | 35.0% | |
| AAAGACTGAGAATGAGAACA+TGG | + | chr3_4:6945489-6945508 | None:intergenic | 35.0% | |
| CATCCTTACAACAAAAGGAA+AGG | + | chr3_4:6945548-6945567 | None:intergenic | 35.0% | |
| !! | TCCTTTTGTTGTAAGGATGA+TGG | - | chr3_4:6945549-6945568 | Msa0487830:CDS | 35.0% |
| ACCATCATCCTTACAACAAA+AGG | + | chr3_4:6945553-6945572 | None:intergenic | 35.0% | |
| !! | TTTGAAATTGGCTTTGGTTG+TGG | + | chr3_4:6945736-6945755 | None:intergenic | 35.0% |
| !!! | CTTCATTCCTTTGTTTTCTC+TGG | - | chr3_4:6945789-6945808 | Msa0487830:intron | 35.0% |
| ATTAGCACCAGAGAAAACAA+AGG | + | chr3_4:6945799-6945818 | None:intergenic | 35.0% | |
| CTATTACATGTGTTTGGAGA+AGG | - | chr3_4:6945889-6945908 | Msa0487830:intron | 35.0% | |
| GGTCACTTATTATGTTCTCA+AGG | - | chr3_4:6945970-6945989 | Msa0487830:intron | 35.0% | |
| !! | CTAAGCAATGAGGAAGTATT+AGG | + | chr3_4:6946074-6946093 | None:intergenic | 35.0% |
| CTAATACTTCCTCATTGCTT+AGG | - | chr3_4:6946072-6946091 | Msa0487830:intron | 35.0% | |
| ! | ACTTCAAGTTACAGAAGGAA+GGG | + | chr3_4:6946123-6946142 | None:intergenic | 35.0% |
| TATTACGTCGCCTCTTACTT+TGG | + | chr3_4:6944855-6944874 | None:intergenic | 40.0% | |
| ! | GTACCGACAAAATGCTTGTT+TGG | - | chr3_4:6945031-6945050 | Msa0487830:intron | 40.0% |
| GACAAAATGCTTGTTTGGGA+TGG | - | chr3_4:6945036-6945055 | Msa0487830:intron | 40.0% | |
| AACTCAAAAGCTCCAATTGC+TGG | + | chr3_4:6945126-6945145 | None:intergenic | 40.0% | |
| ! | CCACGTTTTCTGTAAAAGCA+CGG | + | chr3_4:6945162-6945181 | None:intergenic | 40.0% |
| ! | CGTGCTTTTACAGAAAACGT+GGG | - | chr3_4:6945160-6945179 | Msa0487830:intron | 40.0% |
| TCTGGTACAAAACGAGAGAA+TGG | + | chr3_4:6945278-6945297 | None:intergenic | 40.0% | |
| GTGTTGGACATTGTGTGAAA+AGG | + | chr3_4:6945346-6945365 | None:intergenic | 40.0% | |
| GAGATGAAAAGAAACAGGAC+GGG | + | chr3_4:6945401-6945420 | None:intergenic | 40.0% | |
| !!! | GGTATCGATTTTATGGTTCC+CGG | - | chr3_4:6945447-6945466 | Msa0487830:CDS | 40.0% |
| GGAAATATTTGATGCGAACC+GGG | + | chr3_4:6945468-6945487 | None:intergenic | 40.0% | |
| !! | GCACCTTTCCTTTTGTTGTA+AGG | - | chr3_4:6945542-6945561 | Msa0487830:CDS | 40.0% |
| TCATTGACCACTGTGTACTT+AGG | - | chr3_4:6945619-6945638 | Msa0487830:intron | 40.0% | |
| CATTGACCACTGTGTACTTA+GGG | - | chr3_4:6945620-6945639 | Msa0487830:intron | 40.0% | |
| ATTGACCACTGTGTACTTAG+GGG | - | chr3_4:6945621-6945640 | Msa0487830:intron | 40.0% | |
| ! | GACTTCAAGTTACAGAAGGA+AGG | + | chr3_4:6946124-6946143 | None:intergenic | 40.0% |
| ! | CAAGGACTTCAAGTTACAGA+AGG | + | chr3_4:6946128-6946147 | None:intergenic | 40.0% |
| TCGGAACGCTTCTATATTCA+AGG | + | chr3_4:6946146-6946165 | None:intergenic | 40.0% | |
| !! | ATTTTGGTAGGTACCCATGA+AGG | + | chr3_4:6946169-6946188 | None:intergenic | 40.0% |
| ATGGGTACCTACCAAAATTG+TGG | - | chr3_4:6946171-6946190 | Msa0487830:CDS | 40.0% | |
| ATTGCTTCAAAACTCACCCT+CGG | - | chr3_4:6946198-6946217 | Msa0487830:CDS | 40.0% | |
| TATTACGTCGCCTCTTACTT+TGG | + | chr3_4:6944855-6944874 | None:intergenic | 40.0% | |
| ! | GTACCGACAAAATGCTTGTT+TGG | - | chr3_4:6945031-6945050 | Msa0487830:intron | 40.0% |
| GACAAAATGCTTGTTTGGGA+TGG | - | chr3_4:6945036-6945055 | Msa0487830:intron | 40.0% | |
| AACTCAAAAGCTCCAATTGC+TGG | + | chr3_4:6945126-6945145 | None:intergenic | 40.0% | |
| ! | CCACGTTTTCTGTAAAAGCA+CGG | + | chr3_4:6945162-6945181 | None:intergenic | 40.0% |
| ! | CGTGCTTTTACAGAAAACGT+GGG | - | chr3_4:6945160-6945179 | Msa0487830:intron | 40.0% |
| TCTGGTACAAAACGAGAGAA+TGG | + | chr3_4:6945278-6945297 | None:intergenic | 40.0% | |
| GTGTTGGACATTGTGTGAAA+AGG | + | chr3_4:6945346-6945365 | None:intergenic | 40.0% | |
| GAGATGAAAAGAAACAGGAC+GGG | + | chr3_4:6945401-6945420 | None:intergenic | 40.0% | |
| !!! | GGTATCGATTTTATGGTTCC+CGG | - | chr3_4:6945447-6945466 | Msa0487830:CDS | 40.0% |
| GGAAATATTTGATGCGAACC+GGG | + | chr3_4:6945468-6945487 | None:intergenic | 40.0% | |
| !! | GCACCTTTCCTTTTGTTGTA+AGG | - | chr3_4:6945542-6945561 | Msa0487830:CDS | 40.0% |
| TCATTGACCACTGTGTACTT+AGG | - | chr3_4:6945619-6945638 | Msa0487830:intron | 40.0% | |
| CATTGACCACTGTGTACTTA+GGG | - | chr3_4:6945620-6945639 | Msa0487830:intron | 40.0% | |
| ATTGACCACTGTGTACTTAG+GGG | - | chr3_4:6945621-6945640 | Msa0487830:intron | 40.0% | |
| ! | GACTTCAAGTTACAGAAGGA+AGG | + | chr3_4:6946124-6946143 | None:intergenic | 40.0% |
| ! | CAAGGACTTCAAGTTACAGA+AGG | + | chr3_4:6946128-6946147 | None:intergenic | 40.0% |
| TCGGAACGCTTCTATATTCA+AGG | + | chr3_4:6946146-6946165 | None:intergenic | 40.0% | |
| !! | ATTTTGGTAGGTACCCATGA+AGG | + | chr3_4:6946169-6946188 | None:intergenic | 40.0% |
| ATGGGTACCTACCAAAATTG+TGG | - | chr3_4:6946171-6946190 | Msa0487830:CDS | 40.0% | |
| ATTGCTTCAAAACTCACCCT+CGG | - | chr3_4:6946198-6946217 | Msa0487830:CDS | 40.0% | |
| AGACACGAAGCCAAAGTAAG+AGG | - | chr3_4:6944842-6944861 | Msa0487830:CDS | 45.0% | |
| GGCGACGTAATAAACAAGAC+AGG | - | chr3_4:6944863-6944882 | Msa0487830:CDS | 45.0% | |
| ! | CCGTGCTTTTACAGAAAACG+TGG | - | chr3_4:6945159-6945178 | Msa0487830:intron | 45.0% |
| ATGAAAAGAAACAGGACGGG+AGG | + | chr3_4:6945398-6945417 | None:intergenic | 45.0% | |
| GAGACAGAGTGGTTAATGCT+GGG | + | chr3_4:6945518-6945537 | None:intergenic | 45.0% | |
| AGAGACAGAGTGGTTAATGC+TGG | + | chr3_4:6945519-6945538 | None:intergenic | 45.0% | |
| !! | AAGGTGCTTTAGAGACAGAG+TGG | + | chr3_4:6945529-6945548 | None:intergenic | 45.0% |
| CATTACCCCTAAGTACACAG+TGG | + | chr3_4:6945629-6945648 | None:intergenic | 45.0% | |
| GCTTGGTACATGAAATGCGA+AGG | + | chr3_4:6945659-6945678 | None:intergenic | 45.0% | |
| !! | GAAATTGGCTTTGGTTGTGG+TGG | + | chr3_4:6945733-6945752 | None:intergenic | 45.0% |
| ! | GTCTTGCTCCCAAAGAGTTT+TGG | + | chr3_4:6945828-6945847 | None:intergenic | 45.0% |
| GGGATAGAACCTAAGCAATG+AGG | + | chr3_4:6946084-6946103 | None:intergenic | 45.0% | |
| ATGATGTGAACCTTTGCCGA+GGG | + | chr3_4:6946217-6946236 | None:intergenic | 45.0% | |
| AGACACGAAGCCAAAGTAAG+AGG | - | chr3_4:6944842-6944861 | Msa0487830:CDS | 45.0% | |
| GGCGACGTAATAAACAAGAC+AGG | - | chr3_4:6944863-6944882 | Msa0487830:CDS | 45.0% | |
| ! | CCGTGCTTTTACAGAAAACG+TGG | - | chr3_4:6945159-6945178 | Msa0487830:intron | 45.0% |
| ATGAAAAGAAACAGGACGGG+AGG | + | chr3_4:6945398-6945417 | None:intergenic | 45.0% | |
| GAGACAGAGTGGTTAATGCT+GGG | + | chr3_4:6945518-6945537 | None:intergenic | 45.0% | |
| AGAGACAGAGTGGTTAATGC+TGG | + | chr3_4:6945519-6945538 | None:intergenic | 45.0% | |
| !! | AAGGTGCTTTAGAGACAGAG+TGG | + | chr3_4:6945529-6945548 | None:intergenic | 45.0% |
| CATTACCCCTAAGTACACAG+TGG | + | chr3_4:6945629-6945648 | None:intergenic | 45.0% | |
| GCTTGGTACATGAAATGCGA+AGG | + | chr3_4:6945659-6945678 | None:intergenic | 45.0% | |
| !! | GAAATTGGCTTTGGTTGTGG+TGG | + | chr3_4:6945733-6945752 | None:intergenic | 45.0% |
| ! | GTCTTGCTCCCAAAGAGTTT+TGG | + | chr3_4:6945828-6945847 | None:intergenic | 45.0% |
| GGGATAGAACCTAAGCAATG+AGG | + | chr3_4:6946084-6946103 | None:intergenic | 45.0% | |
| ATGATGTGAACCTTTGCCGA+GGG | + | chr3_4:6946217-6946236 | None:intergenic | 45.0% | |
| AAAAGAAACAGGACGGGAGG+CGG | + | chr3_4:6945395-6945414 | None:intergenic | 50.0% | |
| !! | TTGGCTTTGGTTGTGGTGGT+AGG | + | chr3_4:6945729-6945748 | None:intergenic | 50.0% |
| !! | TAGAAGCGTTCCGACCTTCA+TGG | - | chr3_4:6946152-6946171 | Msa0487830:CDS | 50.0% |
| !! | AGAAGCGTTCCGACCTTCAT+GGG | - | chr3_4:6946153-6946172 | Msa0487830:CDS | 50.0% |
| TGGTAGGTACCCATGAAGGT+CGG | + | chr3_4:6946165-6946184 | None:intergenic | 50.0% | |
| TCAAAACTCACCCTCGGCAA+AGG | - | chr3_4:6946204-6946223 | Msa0487830:CDS | 50.0% | |
| GATGATGTGAACCTTTGCCG+AGG | + | chr3_4:6946218-6946237 | None:intergenic | 50.0% | |
| AAAAGAAACAGGACGGGAGG+CGG | + | chr3_4:6945395-6945414 | None:intergenic | 50.0% | |
| !! | TTGGCTTTGGTTGTGGTGGT+AGG | + | chr3_4:6945729-6945748 | None:intergenic | 50.0% |
| !! | TAGAAGCGTTCCGACCTTCA+TGG | - | chr3_4:6946152-6946171 | Msa0487830:CDS | 50.0% |
| !! | AGAAGCGTTCCGACCTTCAT+GGG | - | chr3_4:6946153-6946172 | Msa0487830:CDS | 50.0% |
| TGGTAGGTACCCATGAAGGT+CGG | + | chr3_4:6946165-6946184 | None:intergenic | 50.0% | |
| TCAAAACTCACCCTCGGCAA+AGG | - | chr3_4:6946204-6946223 | Msa0487830:CDS | 50.0% | |
| GATGATGTGAACCTTTGCCG+AGG | + | chr3_4:6946218-6946237 | None:intergenic | 50.0% | |
| GGACGGGAGGCGGTTAATAT+GGG | + | chr3_4:6945385-6945404 | None:intergenic | 55.0% | |
| AGGACGGGAGGCGGTTAATA+TGG | + | chr3_4:6945386-6945405 | None:intergenic | 55.0% | |
| AAGGGAGCTCGCGATGAATG+CGG | + | chr3_4:6946105-6946124 | None:intergenic | 55.0% | |
| GGACGGGAGGCGGTTAATAT+GGG | + | chr3_4:6945385-6945404 | None:intergenic | 55.0% | |
| AGGACGGGAGGCGGTTAATA+TGG | + | chr3_4:6945386-6945405 | None:intergenic | 55.0% | |
| AAGGGAGCTCGCGATGAATG+CGG | + | chr3_4:6946105-6946124 | None:intergenic | 55.0% | |
| AGGGAGCTCGCGATGAATGC+GGG | + | chr3_4:6946104-6946123 | None:intergenic | 60.0% | |
| AGGGAGCTCGCGATGAATGC+GGG | + | chr3_4:6946104-6946123 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 6944835 | 6946246 | 6944835 | ID=Msa0487830;Name=Msa0487830 |
| chr3_4 | mRNA | 6944835 | 6946246 | 6944835 | ID=Msa0487830-mRNA-1;Parent=Msa0487830;Name=Msa0487830-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|1|1|1|3|0|147 |
| chr3_4 | exon | 6946133 | 6946246 | 6946133 | ID=Msa0487830-mRNA-1:exon:2464;Parent=Msa0487830-mRNA-1 |
| chr3_4 | exon | 6945401 | 6945577 | 6945401 | ID=Msa0487830-mRNA-1:exon:2463;Parent=Msa0487830-mRNA-1 |
| chr3_4 | exon | 6944835 | 6944987 | 6944835 | ID=Msa0487830-mRNA-1:exon:2462;Parent=Msa0487830-mRNA-1 |
| chr3_4 | CDS | 6946133 | 6946246 | 6946133 | ID=Msa0487830-mRNA-1:cds;Parent=Msa0487830-mRNA-1 |
| chr3_4 | CDS | 6945401 | 6945577 | 6945401 | ID=Msa0487830-mRNA-1:cds;Parent=Msa0487830-mRNA-1 |
| chr3_4 | CDS | 6944835 | 6944987 | 6944835 | ID=Msa0487830-mRNA-1:cds;Parent=Msa0487830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
