Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488280 | XP_013458769.1 | 93.191 | 235 | 10 | 1 | 1 | 235 | 1 | 229 | 1.10e-157 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488280 | sp|Q9SZL8|FRS5_ARATH | 52.336 | 107 | 49 | 1 | 55 | 159 | 72 | 178 | 2.50e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488280 | A0A072UTY6 | 93.191 | 235 | 10 | 1 | 1 | 235 | 1 | 229 | 5.26e-158 | 446 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0488280 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0488280 | Msa1423900 | 0.957408 | 2.917633e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488280 | MtrunA17_Chr3g0078041 | 93.191 | 235 | 10 | 1 | 1 | 235 | 1 | 229 | 1.01e-161 | 446 |
| Msa0488280 | MtrunA17_Chr7g0233911 | 49.479 | 192 | 91 | 2 | 41 | 227 | 14 | 204 | 1.14e-62 | 195 |
| Msa0488280 | MtrunA17_Chr4g0033611 | 42.373 | 177 | 92 | 3 | 52 | 222 | 72 | 244 | 1.60e-38 | 134 |
| Msa0488280 | MtrunA17_Chr2g0329421 | 40.217 | 184 | 101 | 3 | 52 | 230 | 23 | 202 | 1.81e-38 | 132 |
| Msa0488280 | MtrunA17_Chr2g0329361 | 37.824 | 193 | 100 | 5 | 50 | 226 | 55 | 243 | 3.90e-37 | 130 |
| Msa0488280 | MtrunA17_Chr5g0448761 | 51.852 | 108 | 49 | 2 | 55 | 159 | 59 | 166 | 1.68e-22 | 95.9 |
| Msa0488280 | MtrunA17_Chr2g0287061 | 36.567 | 134 | 71 | 1 | 55 | 188 | 28 | 147 | 1.34e-20 | 90.1 |
| Msa0488280 | MtrunA17_Chr2g0287061 | 32.215 | 149 | 84 | 2 | 38 | 183 | 162 | 296 | 6.57e-18 | 82.4 |
| Msa0488280 | MtrunA17_Chr2g0329031 | 32.609 | 138 | 85 | 3 | 51 | 188 | 9 | 138 | 5.85e-17 | 79.7 |
| Msa0488280 | MtrunA17_Chr5g0440451 | 39.815 | 108 | 51 | 1 | 53 | 160 | 40 | 133 | 1.32e-16 | 78.6 |
| Msa0488280 | MtrunA17_Chr3g0080351 | 34.127 | 126 | 71 | 1 | 55 | 168 | 75 | 200 | 9.13e-16 | 76.3 |
| Msa0488280 | MtrunA17_Chr1g0207551 | 35.238 | 105 | 65 | 2 | 55 | 159 | 33 | 134 | 1.80e-15 | 75.1 |
| Msa0488280 | MtrunA17_Chr1g0202341 | 35.115 | 131 | 81 | 4 | 55 | 183 | 50 | 178 | 3.63e-15 | 74.3 |
| Msa0488280 | MtrunA17_Chr6g0458391 | 37.963 | 108 | 66 | 1 | 56 | 163 | 225 | 331 | 1.44e-14 | 72.4 |
| Msa0488280 | MtrunA17_Chr6g0458391 | 36.190 | 105 | 65 | 2 | 56 | 160 | 91 | 193 | 5.02e-12 | 65.1 |
| Msa0488280 | MtrunA17_Chr3g0082121 | 38.136 | 118 | 66 | 3 | 56 | 167 | 43 | 159 | 4.08e-14 | 71.2 |
| Msa0488280 | MtrunA17_Chr5g0401121 | 38.095 | 105 | 63 | 2 | 56 | 159 | 56 | 159 | 8.09e-13 | 64.3 |
| Msa0488280 | MtrunA17_Chr2g0291591 | 28.049 | 164 | 96 | 6 | 34 | 186 | 40 | 192 | 2.32e-11 | 63.2 |
| Msa0488280 | MtrunA17_Chr1g0203721 | 35.714 | 98 | 62 | 1 | 59 | 156 | 66 | 162 | 5.62e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488280 | AT2G43280.1 | 73.224 | 183 | 48 | 1 | 50 | 232 | 17 | 198 | 4.43e-100 | 290 |
| Msa0488280 | AT2G43280.2 | 74.233 | 163 | 42 | 0 | 70 | 232 | 1 | 163 | 4.09e-92 | 268 |
| Msa0488280 | AT3G07500.1 | 47.872 | 188 | 91 | 3 | 46 | 227 | 23 | 209 | 2.39e-51 | 166 |
| Msa0488280 | AT4G12850.1 | 43.646 | 181 | 90 | 2 | 50 | 226 | 5 | 177 | 2.43e-46 | 152 |
| Msa0488280 | AT3G59470.3 | 46.629 | 178 | 84 | 4 | 55 | 226 | 69 | 241 | 8.83e-43 | 145 |
| Msa0488280 | AT3G59470.1 | 46.629 | 178 | 84 | 4 | 55 | 226 | 69 | 241 | 8.83e-43 | 145 |
| Msa0488280 | AT3G59470.2 | 46.629 | 178 | 84 | 4 | 55 | 226 | 81 | 253 | 1.24e-42 | 145 |
| Msa0488280 | AT4G12850.2 | 50.442 | 113 | 44 | 2 | 50 | 158 | 5 | 109 | 1.25e-30 | 110 |
| Msa0488280 | AT4G12850.4 | 51.376 | 109 | 49 | 1 | 50 | 158 | 5 | 109 | 1.37e-30 | 110 |
| Msa0488280 | AT4G38180.1 | 52.336 | 107 | 49 | 1 | 55 | 159 | 72 | 178 | 2.54e-24 | 101 |
| Msa0488280 | AT2G32250.2 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.64e-18 | 82.8 |
| Msa0488280 | AT2G32250.4 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.64e-18 | 82.8 |
| Msa0488280 | AT2G32250.6 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.77e-18 | 82.8 |
| Msa0488280 | AT2G32250.1 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.77e-18 | 82.8 |
| Msa0488280 | AT2G32250.3 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.77e-18 | 82.8 |
| Msa0488280 | AT2G32250.5 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.93e-18 | 82.8 |
| Msa0488280 | AT2G32250.8 | 34.146 | 123 | 75 | 2 | 60 | 182 | 1 | 117 | 1.04e-16 | 79.3 |
| Msa0488280 | AT2G32250.7 | 34.146 | 123 | 75 | 2 | 60 | 182 | 1 | 117 | 1.12e-16 | 79.3 |
| Msa0488280 | AT3G06250.2 | 40.385 | 104 | 48 | 1 | 55 | 158 | 189 | 278 | 2.51e-16 | 78.2 |
| Msa0488280 | AT3G06250.2 | 35.088 | 114 | 60 | 1 | 55 | 168 | 27 | 126 | 1.66e-15 | 75.9 |
| Msa0488280 | AT3G06250.1 | 40.385 | 104 | 48 | 1 | 55 | 158 | 189 | 278 | 2.51e-16 | 78.2 |
| Msa0488280 | AT3G06250.1 | 35.088 | 114 | 60 | 1 | 55 | 168 | 27 | 126 | 1.66e-15 | 75.9 |
| Msa0488280 | AT3G06250.3 | 40.385 | 104 | 48 | 1 | 55 | 158 | 189 | 278 | 2.51e-16 | 78.2 |
| Msa0488280 | AT3G06250.3 | 35.088 | 114 | 60 | 1 | 55 | 168 | 27 | 126 | 1.66e-15 | 75.9 |
| Msa0488280 | AT4G15090.1 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa0488280 | AT4G15090.5 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa0488280 | AT4G15090.3 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa0488280 | AT4G15090.2 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa0488280 | AT4G15090.4 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa0488280 | AT5G18960.2 | 39.423 | 104 | 49 | 1 | 55 | 158 | 210 | 299 | 6.58e-16 | 77.0 |
| Msa0488280 | AT5G18960.2 | 33.600 | 125 | 62 | 2 | 55 | 172 | 42 | 152 | 9.25e-16 | 76.6 |
| Msa0488280 | AT5G18960.1 | 39.423 | 104 | 49 | 1 | 55 | 158 | 210 | 299 | 6.58e-16 | 77.0 |
| Msa0488280 | AT5G18960.1 | 33.600 | 125 | 62 | 2 | 55 | 172 | 42 | 152 | 9.25e-16 | 76.6 |
| Msa0488280 | AT2G27110.2 | 34.247 | 146 | 71 | 5 | 16 | 161 | 18 | 138 | 5.35e-15 | 74.3 |
| Msa0488280 | AT2G27110.1 | 34.247 | 146 | 71 | 5 | 16 | 161 | 18 | 138 | 5.35e-15 | 74.3 |
| Msa0488280 | AT1G76320.2 | 33.099 | 142 | 88 | 4 | 60 | 200 | 1 | 136 | 1.04e-14 | 73.6 |
| Msa0488280 | AT1G76320.1 | 33.099 | 142 | 88 | 4 | 60 | 200 | 1 | 136 | 1.12e-14 | 73.2 |
| Msa0488280 | AT1G76320.4 | 33.099 | 142 | 88 | 4 | 60 | 200 | 1 | 136 | 1.12e-14 | 73.2 |
| Msa0488280 | AT1G76320.3 | 38.679 | 106 | 59 | 3 | 60 | 165 | 1 | 100 | 1.29e-14 | 73.2 |
| Msa0488280 | AT3G22170.2 | 33.582 | 134 | 72 | 3 | 55 | 176 | 69 | 197 | 2.00e-14 | 72.4 |
| Msa0488280 | AT3G22170.1 | 33.582 | 134 | 72 | 3 | 55 | 176 | 69 | 197 | 2.00e-14 | 72.4 |
| Msa0488280 | AT4G19990.5 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.03e-14 | 71.2 |
| Msa0488280 | AT4G19990.3 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.03e-14 | 71.2 |
| Msa0488280 | AT4G19990.4 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.03e-14 | 71.2 |
| Msa0488280 | AT4G19990.7 | 32.308 | 130 | 72 | 2 | 45 | 160 | 24 | 151 | 5.30e-14 | 71.2 |
| Msa0488280 | AT4G19990.6 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.52e-14 | 71.2 |
| Msa0488280 | AT4G19990.2 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.52e-14 | 71.2 |
Find 80 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTGGGGATGGTAATT+TGG | 0.158133 | 3_4:+7644780 | Msa0488280:CDS |
| TCGCACTTGGTTCTACTTCT+AGG | 0.182777 | 3_4:-7643009 | None:intergenic |
| AGTGACGGGGCGGAAGTTTC+TGG | 0.203404 | 3_4:+7644766 | Msa0488280:CDS |
| GTTTCTGGGGATGGTAATTT+GGG | 0.242501 | 3_4:+7644781 | Msa0488280:CDS |
| AGATCGGAAAAGAGTTATTC+TGG | 0.296771 | 3_4:+7645831 | Msa0488280:CDS |
| AGTATGATCAGTCCGGAAAA+TGG | 0.304694 | 3_4:+7646162 | Msa0488280:CDS |
| CCATGTTGCATAACAAAGTA+TGG | 0.327959 | 3_4:-7644723 | None:intergenic |
| AGGATTCTCGCCCGCAGGTT+TGG | 0.350053 | 3_4:+7646035 | Msa0488280:CDS |
| CCGCAGGTTTGGATGTAATA+AGG | 0.351849 | 3_4:+7646046 | Msa0488280:CDS |
| ATTATGGATTTACCATTGTT+TGG | 0.357489 | 3_4:-7646247 | None:intergenic |
| TTGATTTGTTTCTCTGAAAT+CGG | 0.368015 | 3_4:+7643133 | Msa0488280:five_prime_UTR |
| TGAGAAGGATAAGAAAATTC+AGG | 0.371151 | 3_4:+7646654 | Msa0488280:CDS |
| AGTTATTCTGGGAGAGAGTT+GGG | 0.374971 | 3_4:+7645843 | Msa0488280:CDS |
| TGATCATGACCATGCTGTTA+AGG | 0.378319 | 3_4:+7645890 | Msa0488280:CDS |
| AGAGAGTCTAAGGTTTGAAT+GGG | 0.395400 | 3_4:-7643104 | None:intergenic |
| TCAACGTGAGAGAGAGTCTA+AGG | 0.397963 | 3_4:-7643114 | None:intergenic |
| ACAAATTCCATGCCTTCATA+TGG | 0.406605 | 3_4:-7645915 | None:intergenic |
| CTGGCCCTTGGTTTACGAAC+TGG | 0.417375 | 3_4:-7646104 | None:intergenic |
| GACAACGTTAAAGAGAGAAT+TGG | 0.418915 | 3_4:-7642942 | None:intergenic |
| TCCGATCTACACCCATCATT+CGG | 0.425751 | 3_4:-7645816 | None:intergenic |
| GAGAGAGTCTAAGGTTTGAA+TGG | 0.429484 | 3_4:-7643105 | None:intergenic |
| CTGGTGCAAAAGCTCTTCTA+TGG | 0.431453 | 3_4:-7646824 | None:intergenic |
| CCTTCCCTAGTGCTGGCCCT+TGG | 0.440050 | 3_4:-7646116 | None:intergenic |
| AAATATCTTAGCAGCATCTT+CGG | 0.446381 | 3_4:-7645940 | None:intergenic |
| AGTCATCACTAAAGGATAAG+AGG | 0.449248 | 3_4:-7647753 | None:intergenic |
| GAGTTATTCTGGGAGAGAGT+TGG | 0.452971 | 3_4:+7645842 | Msa0488280:CDS |
| CAGCACTAGGGAAGGTTGTA+AGG | 0.453970 | 3_4:+7646124 | Msa0488280:CDS |
| GGTCATTGTGTCAGCATACA+AGG | 0.462427 | 3_4:+7646071 | Msa0488280:CDS |
| GTGACGGGGCGGAAGTTTCT+GGG | 0.469581 | 3_4:+7644767 | Msa0488280:CDS |
| GTATGATCAGTCCGGAAAAT+GGG | 0.472464 | 3_4:+7646163 | Msa0488280:CDS |
| AAATGTTATGTTCTGTTCAA+AGG | 0.474007 | 3_4:+7647725 | Msa0488280:three_prime_UTR |
| ATGGAATCTAGATTAGTTGA+TGG | 0.477267 | 3_4:+7644742 | Msa0488280:CDS |
| AGGAACTAACAGTAGAGCTT+CGG | 0.480103 | 3_4:+7646674 | Msa0488280:CDS |
| GTCAGCATACAAGGGAAACT+TGG | 0.481454 | 3_4:+7646080 | Msa0488280:CDS |
| TAATGCGTGTGATGTCTTGT+CGG | 0.484944 | 3_4:+7645994 | Msa0488280:CDS |
| GTAAACCAAGGGCCAGCACT+AGG | 0.487984 | 3_4:+7646111 | Msa0488280:CDS |
| ACATAATGCAGGGCTACGTC+TGG | 0.504943 | 3_4:-7646843 | None:intergenic |
| CCATACTTTGTTATGCAACA+TGG | 0.507703 | 3_4:+7644723 | Msa0488280:exon |
| TAAATACTCACACATAATGC+AGG | 0.511345 | 3_4:-7646854 | None:intergenic |
| TGTGATGTCTTGTCGGCGCT+CGG | 0.527714 | 3_4:+7646001 | Msa0488280:CDS |
| ATGGTAGGATTCTCGCCCGC+AGG | 0.530043 | 3_4:+7646030 | Msa0488280:CDS |
| CATATCAAGTATGATCAGTC+CGG | 0.531806 | 3_4:+7646155 | Msa0488280:CDS |
| CTTACAACCTTCCCTAGTGC+TGG | 0.535860 | 3_4:-7646123 | None:intergenic |
| GATGAATATGGCCGACATGT+AGG | 0.539154 | 3_4:+7645966 | Msa0488280:CDS |
| GATCGGAAAAGAGTTATTCT+GGG | 0.541626 | 3_4:+7645832 | Msa0488280:CDS |
| CTAGTCTTGTGACATAGAGT+TGG | 0.545437 | 3_4:+7647787 | Msa0488280:three_prime_UTR |
| TAAACCAAGGGCCAGCACTA+GGG | 0.547162 | 3_4:+7646112 | Msa0488280:CDS |
| ACCGAATGATGGGTGTAGAT+CGG | 0.551733 | 3_4:+7645815 | Msa0488280:CDS |
| TAGCAAGTAGTCATCACTAA+AGG | 0.553528 | 3_4:-7647761 | None:intergenic |
| GATTAGTTGATGGAAGTGAC+GGG | 0.556222 | 3_4:+7644752 | Msa0488280:CDS |
| GTGACAGTGGAACCGAATGA+TGG | 0.566161 | 3_4:+7645804 | Msa0488280:intron |
| CTTATTACATCCAAACCTGC+GGG | 0.573213 | 3_4:-7646045 | None:intergenic |
| ATTGTTTGGCGTGCTTCACG+TGG | 0.576935 | 3_4:-7646233 | None:intergenic |
| GAGAGTCTAAGGTTTGAATG+GGG | 0.579968 | 3_4:-7643103 | None:intergenic |
| AGATTAGTTGATGGAAGTGA+CGG | 0.582091 | 3_4:+7644751 | Msa0488280:CDS |
| TACGTGTTATGCAGAATGGA+GGG | 0.583534 | 3_4:+7647676 | Msa0488280:intron |
| GTCATCACTAAAGGATAAGA+GGG | 0.584487 | 3_4:-7647752 | None:intergenic |
| GGGGCGGAAGTTTCTGGGGA+TGG | 0.587261 | 3_4:+7644772 | Msa0488280:CDS |
| TTACGTGTTATGCAGAATGG+AGG | 0.587814 | 3_4:+7647675 | Msa0488280:intron |
| GCTGTTAAGGAACCATATGA+AGG | 0.588056 | 3_4:+7645903 | Msa0488280:CDS |
| TAAGGAACCATATGAAGGCA+TGG | 0.594188 | 3_4:+7645908 | Msa0488280:CDS |
| TGACGGGGCGGAAGTTTCTG+GGG | 0.598363 | 3_4:+7644768 | Msa0488280:CDS |
| CCAAGGGCCAGCACTAGGGA+AGG | 0.608378 | 3_4:+7646116 | Msa0488280:CDS |
| CATATGGTTCCTTAACAGCA+TGG | 0.608918 | 3_4:-7645899 | None:intergenic |
| TGTCGGCGCTCGGAAAGAGA+TGG | 0.610372 | 3_4:+7646011 | Msa0488280:CDS |
| TGACAGTGGAACCGAATGAT+GGG | 0.614797 | 3_4:+7645805 | Msa0488280:intron |
| CATGGTCATGATCAGAGATA+CGG | 0.615572 | 3_4:-7645881 | None:intergenic |
| ACGTGAAGCACGCCAAACAA+TGG | 0.620174 | 3_4:+7646235 | Msa0488280:CDS |
| TTGGTCCAGTTCGTAAACCA+AGG | 0.623231 | 3_4:+7646099 | Msa0488280:CDS |
| CAGGTTTGGATGTAATAAGG+AGG | 0.625678 | 3_4:+7646049 | Msa0488280:CDS |
| CCTTATTACATCCAAACCTG+CGG | 0.631158 | 3_4:-7646046 | None:intergenic |
| GCATTACAAATCCTACATGT+CGG | 0.642858 | 3_4:-7645977 | None:intergenic |
| AGGTTTGGATGTAATAAGGA+GGG | 0.648013 | 3_4:+7646050 | Msa0488280:CDS |
| AAATACTCACACATAATGCA+GGG | 0.651333 | 3_4:-7646853 | None:intergenic |
| TGGTCCAGTTCGTAAACCAA+GGG | 0.657286 | 3_4:+7646100 | Msa0488280:CDS |
| GTCATTGTGTCAGCATACAA+GGG | 0.663280 | 3_4:+7646072 | Msa0488280:CDS |
| GTTATGCAGAATGGAGGGCG+TGG | 0.684386 | 3_4:+7647681 | Msa0488280:intron |
| GGCGCTCGGAAAGAGATGGT+AGG | 0.693531 | 3_4:+7646015 | Msa0488280:CDS |
| AGTTGATGGAAGTGACGGGG+CGG | 0.718997 | 3_4:+7644756 | Msa0488280:CDS |
| ATTAGTTGATGGAAGTGACG+GGG | 0.720299 | 3_4:+7644753 | Msa0488280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATCAATTAAAAAATA+TGG | - | chr3_4:7646338-7646357 | None:intergenic | 10.0% |
| !! | ATATTATATTAAACTTTGTA+AGG | + | chr3_4:7647322-7647341 | Msa0488280:intron | 10.0% |
| !!! | TTTTTATATTAAACTTTGTA+AGG | + | chr3_4:7647485-7647504 | Msa0488280:intron | 10.0% |
| !!! | TTTTTATATTAAACTTTGTA+AGG | + | chr3_4:7647485-7647504 | Msa0488280:intron | 10.0% |
| !!! | TGATTTTCTCAAATTATTAT+CGG | - | chr3_4:7643679-7643698 | None:intergenic | 15.0% |
| !! | AGAAATGATAGAATTAAAAA+TGG | + | chr3_4:7644157-7644176 | Msa0488280:intron | 15.0% |
| !!! | AAATAAAAATCTTTTACTTG+TGG | + | chr3_4:7644652-7644671 | Msa0488280:intron | 15.0% |
| !! | AAAATGAATTAGTATTATGA+GGG | + | chr3_4:7645343-7645362 | Msa0488280:intron | 15.0% |
| !!! | CATAATTTTCATTTCATTAA+GGG | - | chr3_4:7645378-7645397 | None:intergenic | 15.0% |
| !!! | TCATAATTTTCATTTCATTA+AGG | - | chr3_4:7645379-7645398 | None:intergenic | 15.0% |
| !! | TAATGAAATGAAAATTATGA+AGG | + | chr3_4:7645379-7645398 | Msa0488280:intron | 15.0% |
| !! | AATGAAATGAAAATTATGAA+GGG | + | chr3_4:7645380-7645399 | Msa0488280:intron | 15.0% |
| !! | ATAAAAAATTCATTCTATTC+AGG | - | chr3_4:7645415-7645434 | None:intergenic | 15.0% |
| !!! | AAGATATTTTATGATGAATA+TGG | + | chr3_4:7645954-7645973 | Msa0488280:CDS | 15.0% |
| !!! | TCTTCATTTCTATATTTTTT+TGG | + | chr3_4:7646416-7646435 | Msa0488280:intron | 15.0% |
| !! | ATTATATTATATAACATCTC+TGG | + | chr3_4:7646561-7646580 | Msa0488280:intron | 15.0% |
| !!! | AATAGTTTAATAGTTTTTGT+TGG | + | chr3_4:7646890-7646909 | Msa0488280:intron | 15.0% |
| !! | GGAGTAAAAAAAAAAAATGA+TGG | - | chr3_4:7642924-7642943 | None:intergenic | 20.0% |
| !!! | TACAATTGTATTTGAAATCA+CGG | + | chr3_4:7643490-7643509 | Msa0488280:intron | 20.0% |
| !! | TATTAAAGAGAGTTTGAATA+GGG | + | chr3_4:7644183-7644202 | Msa0488280:intron | 20.0% |
| !! | AATATCTTCATATATGAGTA+TGG | + | chr3_4:7644555-7644574 | Msa0488280:intron | 20.0% |
| !!! | CATTTTGGAATATAAATGAT+AGG | - | chr3_4:7645329-7645348 | None:intergenic | 20.0% |
| !!! | CTCATAATACTAATTCATTT+TGG | - | chr3_4:7645344-7645363 | None:intergenic | 20.0% |
| !! | CAAAATGAATTAGTATTATG+AGG | + | chr3_4:7645342-7645361 | Msa0488280:intron | 20.0% |
| !! | ATGAAATGAAAATTATGAAG+GGG | + | chr3_4:7645381-7645400 | Msa0488280:intron | 20.0% |
| !!! | TGATTGCTTTAAATGAAAAA+TGG | - | chr3_4:7645705-7645724 | None:intergenic | 20.0% |
| !!! | ATCCATAATTCTTATTTAAC+CGG | + | chr3_4:7646261-7646280 | Msa0488280:intron | 20.0% |
| !!! | GAAGCTAATATTATTGTTTT+TGG | + | chr3_4:7646472-7646491 | Msa0488280:intron | 20.0% |
| !! | TTATAAATAAACACTACACA+GGG | - | chr3_4:7647125-7647144 | None:intergenic | 20.0% |
| !! | TTTATAAATAAACACTACAC+AGG | - | chr3_4:7647126-7647145 | None:intergenic | 20.0% |
| ! | TTCAATCAACTAAAAAACGT+TGG | - | chr3_4:7643061-7643080 | None:intergenic | 25.0% |
| !!! | TTGATTTGTTTCTCTGAAAT+CGG | + | chr3_4:7643133-7643152 | Msa0488280:five_prime_UTR | 25.0% |
| ! | TTATTACATGTAGCAGAAAA+GGG | - | chr3_4:7643557-7643576 | None:intergenic | 25.0% |
| ! | ATTATTACATGTAGCAGAAA+AGG | - | chr3_4:7643558-7643577 | None:intergenic | 25.0% |
| ! | TTTAAGAAAATGACATGTGT+TGG | + | chr3_4:7643874-7643893 | Msa0488280:intron | 25.0% |
| ! | GAAACCATATTTACAATCAT+TGG | - | chr3_4:7643990-7644009 | None:intergenic | 25.0% |
| ! | GTATTAAAGAGAGTTTGAAT+AGG | + | chr3_4:7644182-7644201 | Msa0488280:intron | 25.0% |
| ! | TGACAAATACACTATGAAAA+TGG | - | chr3_4:7644516-7644535 | None:intergenic | 25.0% |
| !! | AAAGAATGCACTTTTATGTA+GGG | - | chr3_4:7644600-7644619 | None:intergenic | 25.0% |
| !! | AAAAGAATGCACTTTTATGT+AGG | - | chr3_4:7644601-7644620 | None:intergenic | 25.0% |
| !! | CTTTTATTGAAAGCAAAGTT+AGG | + | chr3_4:7644616-7644635 | Msa0488280:intron | 25.0% |
| !! | CAAATTTTGAGCTAAAATGT+GGG | - | chr3_4:7645003-7645022 | None:intergenic | 25.0% |
| !! | ACAAATTTTGAGCTAAAATG+TGG | - | chr3_4:7645004-7645023 | None:intergenic | 25.0% |
| !! | TCTGTTGGAAATACTATTTT+TGG | - | chr3_4:7645229-7645248 | None:intergenic | 25.0% |
| !! | AAATTCCAAGTTGAAATGTT+TGG | - | chr3_4:7645269-7645288 | None:intergenic | 25.0% |
| ! | AAACATTTCAACTTGGAATT+TGG | + | chr3_4:7645268-7645287 | Msa0488280:intron | 25.0% |
| ! | AACATTTCAACTTGGAATTT+GGG | + | chr3_4:7645269-7645288 | Msa0488280:intron | 25.0% |
| ! | TTTATTCGATAGTTGAATGA+AGG | + | chr3_4:7645430-7645449 | Msa0488280:intron | 25.0% |
| ! | AAGAAACCTATAGTTATTAG+AGG | - | chr3_4:7645625-7645644 | None:intergenic | 25.0% |
| ! | ATGCAAAAATAAGTTATGCA+TGG | - | chr3_4:7645750-7645769 | None:intergenic | 25.0% |
| ! | AAGATAAATTATTGTGACAG+TGG | + | chr3_4:7645791-7645810 | Msa0488280:intron | 25.0% |
| ! | ATTATGGATTTACCATTGTT+TGG | - | chr3_4:7646250-7646269 | None:intergenic | 25.0% |
| ! | AACCGGTTAAATAAGAATTA+TGG | - | chr3_4:7646266-7646285 | None:intergenic | 25.0% |
| ! | ATAATTAACCAATGCAAAAC+CGG | - | chr3_4:7647096-7647115 | None:intergenic | 25.0% |
| !!! | TGATTAATTTTGTCTGAAGT+TGG | - | chr3_4:7647370-7647389 | None:intergenic | 25.0% |
| ! | AAAACAATAAAAGCTAGTAC+TGG | - | chr3_4:7647633-7647652 | None:intergenic | 25.0% |
| !!! | AGTACTAGCTTTTATTGTTT+TGG | + | chr3_4:7647632-7647651 | Msa0488280:intron | 25.0% |
| !! | TGAACAGAACATAACATTTT+AGG | - | chr3_4:7647724-7647743 | None:intergenic | 25.0% |
| ! | AAATGTTATGTTCTGTTCAA+AGG | + | chr3_4:7647725-7647744 | Msa0488280:three_prime_UTR | 25.0% |
| !! | TAAAAAACGTTGGTGTTGTT+GGG | - | chr3_4:7643051-7643070 | None:intergenic | 30.0% |
| GATGGTAAACTTCGTTTATT+TGG | + | chr3_4:7643254-7643273 | Msa0488280:intron | 30.0% | |
| GTAAACTTCGTTTATTTGGT+GGG | + | chr3_4:7643258-7643277 | Msa0488280:intron | 30.0% | |
| AGTAACAGATGGTTTCAAAA+TGG | + | chr3_4:7643446-7643465 | Msa0488280:intron | 30.0% | |
| ! | AGATGGTTTCAAAATGGTTT+TGG | + | chr3_4:7643452-7643471 | Msa0488280:intron | 30.0% |
| ! | GATGGTTTCAAAATGGTTTT+GGG | + | chr3_4:7643453-7643472 | Msa0488280:intron | 30.0% |
| TTACAATCATTGGCAGAAAA+GGG | - | chr3_4:7643980-7643999 | None:intergenic | 30.0% | |
| TTTACAATCATTGGCAGAAA+AGG | - | chr3_4:7643981-7644000 | None:intergenic | 30.0% | |
| TCTGCCAATGATTGTAAATA+TGG | + | chr3_4:7643983-7644002 | Msa0488280:intron | 30.0% | |
| ! | TTGGTTACTTTCTCAGAAAA+GGG | - | chr3_4:7644025-7644044 | None:intergenic | 30.0% |
| ! | TTTGGTTACTTTCTCAGAAA+AGG | - | chr3_4:7644026-7644045 | None:intergenic | 30.0% |
| TCTGAGAAAGTAACCAAATA+AGG | + | chr3_4:7644028-7644047 | Msa0488280:intron | 30.0% | |
| CTGAGAAAGTAACCAAATAA+GGG | + | chr3_4:7644029-7644048 | Msa0488280:intron | 30.0% | |
| AATTCAAACAGACCCTTATT+TGG | - | chr3_4:7644044-7644063 | None:intergenic | 30.0% | |
| ! | TTGGTTCTTGTACTAGATTA+AGG | + | chr3_4:7644274-7644293 | Msa0488280:intron | 30.0% |
| TAGAGAGCTTAAACAACTTA+TGG | - | chr3_4:7644348-7644367 | None:intergenic | 30.0% | |
| ATAAGTTGTTTAAGCTCTCT+AGG | + | chr3_4:7644347-7644366 | Msa0488280:intron | 30.0% | |
| ! | AAAATCTTTTACTTGTGGAC+AGG | + | chr3_4:7644657-7644676 | Msa0488280:intron | 30.0% |
| ! | ATGGAATCTAGATTAGTTGA+TGG | + | chr3_4:7644742-7644761 | Msa0488280:CDS | 30.0% |
| !! | AGAGAATTTGTTATTCACCA+GGG | - | chr3_4:7645190-7645209 | None:intergenic | 30.0% |
| !! | TAGAGAATTTGTTATTCACC+AGG | - | chr3_4:7645191-7645210 | None:intergenic | 30.0% |
| TTAGTATTATGAGGGTGATT+AGG | + | chr3_4:7645351-7645370 | Msa0488280:intron | 30.0% | |
| TGAAAATTATGAAGGGGATT+AGG | + | chr3_4:7645387-7645406 | Msa0488280:intron | 30.0% | |
| TGAAAGGATGTTTACTAAGA+GGG | - | chr3_4:7645499-7645518 | None:intergenic | 30.0% | |
| TTGAAAGGATGTTTACTAAG+AGG | - | chr3_4:7645500-7645519 | None:intergenic | 30.0% | |
| !! | TTCTTGTATGAGGTATTGAA+AGG | - | chr3_4:7645515-7645534 | None:intergenic | 30.0% |
| !! | TAGTTATTAGAGGCTCTAAA+GGG | - | chr3_4:7645615-7645634 | None:intergenic | 30.0% |
| ! | ATAGTTATTAGAGGCTCTAA+AGG | - | chr3_4:7645616-7645635 | None:intergenic | 30.0% |
| TTAGAGCCTCTAATAACTAT+AGG | + | chr3_4:7645616-7645635 | Msa0488280:intron | 30.0% | |
| AAATATCTTAGCAGCATCTT+CGG | - | chr3_4:7645943-7645962 | None:intergenic | 30.0% | |
| !! | TTTAACCGGTTTTCAATCTT+TGG | + | chr3_4:7646275-7646294 | Msa0488280:intron | 30.0% |
| ! | GTTTTCCAAAGATTGAAAAC+CGG | - | chr3_4:7646283-7646302 | None:intergenic | 30.0% |
| ! | ATATTAGCTTCTTCTTACCA+AGG | - | chr3_4:7646463-7646482 | None:intergenic | 30.0% |
| !!! | TTCTGCGTTGTTTTTGTTTT+AGG | + | chr3_4:7646630-7646649 | Msa0488280:intron | 30.0% |
| !!! | GTTTTTGTTTTAGGATGAGA+AGG | + | chr3_4:7646639-7646658 | Msa0488280:intron | 30.0% |
| TGAGAAGGATAAGAAAATTC+AGG | + | chr3_4:7646654-7646673 | Msa0488280:CDS | 30.0% | |
| TAGAGCTTCGGATTAAAAAA+CGG | + | chr3_4:7646686-7646705 | Msa0488280:CDS | 30.0% | |
| AAATACTCACACATAATGCA+GGG | - | chr3_4:7646856-7646875 | None:intergenic | 30.0% | |
| TAAATACTCACACATAATGC+AGG | - | chr3_4:7646857-7646876 | None:intergenic | 30.0% | |
| AGACAAAATTAACCAATGCA+AGG | + | chr3_4:7647389-7647408 | Msa0488280:intron | 30.0% | |
| GATGTGCTAAAATAGATTGT+AGG | - | chr3_4:7647611-7647630 | None:intergenic | 30.0% | |
| ! | ATTTTACGTGTTATGCAGAA+TGG | + | chr3_4:7647672-7647691 | Msa0488280:intron | 30.0% |
| GACAACGTTAAAGAGAGAAT+TGG | - | chr3_4:7642945-7642964 | None:intergenic | 35.0% | |
| !! | CTAAAAAACGTTGGTGTTGT+TGG | - | chr3_4:7643052-7643071 | None:intergenic | 35.0% |
| ! | AGAGAGTCTAAGGTTTGAAT+GGG | - | chr3_4:7643107-7643126 | None:intergenic | 35.0% |
| GGTAAACTTCGTTTATTTGG+TGG | + | chr3_4:7643257-7643276 | Msa0488280:intron | 35.0% | |
| TGTGTGATTGTTTAAACCCT+TGG | + | chr3_4:7643306-7643325 | Msa0488280:intron | 35.0% | |
| ! | TAGTTCGGGTTATTGTTTGA+TGG | + | chr3_4:7643341-7643360 | Msa0488280:intron | 35.0% |
| CTCAGTATAGTAGTAACAGA+TGG | + | chr3_4:7643435-7643454 | Msa0488280:intron | 35.0% | |
| AGTGCTACATAGGTTCTTAA+TGG | - | chr3_4:7643620-7643639 | None:intergenic | 35.0% | |
| TGTTTGTATCAGTGCTACAT+AGG | - | chr3_4:7643630-7643649 | None:intergenic | 35.0% | |
| !! | ATGTAGCACTGATACAAACA+CGG | + | chr3_4:7643630-7643649 | Msa0488280:intron | 35.0% |
| ! | AAGTGATGATTTTCTGCTAC+TGG | + | chr3_4:7643927-7643946 | Msa0488280:intron | 35.0% |
| CTATGCTTAATTTACTCTCG+TGG | - | chr3_4:7644099-7644118 | None:intergenic | 35.0% | |
| CGAGAGTAAATTAAGCATAG+TGG | + | chr3_4:7644099-7644118 | Msa0488280:intron | 35.0% | |
| CCATGTTGCATAACAAAGTA+TGG | - | chr3_4:7644726-7644745 | None:intergenic | 35.0% | |
| ! | CCATACTTTGTTATGCAACA+TGG | + | chr3_4:7644723-7644742 | Msa0488280:exon | 35.0% |
| !! | AGATTAGTTGATGGAAGTGA+CGG | + | chr3_4:7644751-7644770 | Msa0488280:CDS | 35.0% |
| GTAGCTTAAGCAAATTACTG+AGG | - | chr3_4:7644965-7644984 | None:intergenic | 35.0% | |
| GTTGTCTAGTTGTGTATATG+TGG | + | chr3_4:7645117-7645136 | Msa0488280:intron | 35.0% | |
| ACATAGCTACAACACATTGT+AGG | - | chr3_4:7645166-7645185 | None:intergenic | 35.0% | |
| CAAGACCAAACATTTCAACT+TGG | + | chr3_4:7645261-7645280 | Msa0488280:intron | 35.0% | |
| CGATAGTTGAATGAAGGAAA+AGG | + | chr3_4:7645436-7645455 | Msa0488280:intron | 35.0% | |
| TACAAGAACCACGACAAAAA+CGG | + | chr3_4:7645527-7645546 | Msa0488280:intron | 35.0% | |
| AGATCGGAAAAGAGTTATTC+TGG | + | chr3_4:7645831-7645850 | Msa0488280:CDS | 35.0% | |
| GATCGGAAAAGAGTTATTCT+GGG | + | chr3_4:7645832-7645851 | Msa0488280:CDS | 35.0% | |
| ACAAATTCCATGCCTTCATA+TGG | - | chr3_4:7645918-7645937 | None:intergenic | 35.0% | |
| GCATTACAAATCCTACATGT+CGG | - | chr3_4:7645980-7645999 | None:intergenic | 35.0% | |
| AGGTTTGGATGTAATAAGGA+GGG | + | chr3_4:7646050-7646069 | Msa0488280:CDS | 35.0% | |
| CATATCAAGTATGATCAGTC+CGG | + | chr3_4:7646155-7646174 | Msa0488280:CDS | 35.0% | |
| !! | CTTTGTTATCACCCATTTTC+CGG | - | chr3_4:7646177-7646196 | None:intergenic | 35.0% |
| TAAAACGTTATATTGTGCCC+AGG | + | chr3_4:7646352-7646371 | Msa0488280:intron | 35.0% | |
| TCACAAAGAGGAGTTAAAAC+AGG | - | chr3_4:7646515-7646534 | None:intergenic | 35.0% | |
| !!! | TGTTTTAACTCCTCTTTGTG+AGG | + | chr3_4:7646514-7646533 | Msa0488280:intron | 35.0% |
| TTCATTGTGTTGGGTTTGAA+GGG | + | chr3_4:7646992-7647011 | Msa0488280:intron | 35.0% | |
| GTCATATCTCTAAGCAATGT+GGG | - | chr3_4:7647030-7647049 | None:intergenic | 35.0% | |
| TGTCATATCTCTAAGCAATG+TGG | - | chr3_4:7647031-7647050 | None:intergenic | 35.0% | |
| AATTAGACTGAACCAATGCA+AGG | + | chr3_4:7647220-7647239 | Msa0488280:intron | 35.0% | |
| ! | TTTTAGACTGAACCAATGCA+AGG | + | chr3_4:7647426-7647445 | Msa0488280:intron | 35.0% |
| GTCATCACTAAAGGATAAGA+GGG | - | chr3_4:7647755-7647774 | None:intergenic | 35.0% | |
| AGTCATCACTAAAGGATAAG+AGG | - | chr3_4:7647756-7647775 | None:intergenic | 35.0% | |
| TAGCAAGTAGTCATCACTAA+AGG | - | chr3_4:7647764-7647783 | None:intergenic | 35.0% | |
| ACCAAGTGCGAAAAAGCAAA+AGG | + | chr3_4:7643021-7643040 | Msa0488280:five_prime_UTR | 40.0% | |
| !!! | TCCTTTTGCTTTTTCGCACT+TGG | - | chr3_4:7643025-7643044 | None:intergenic | 40.0% |
| ! | GAGAGTCTAAGGTTTGAATG+GGG | - | chr3_4:7643106-7643125 | None:intergenic | 40.0% |
| ! | GAGAGAGTCTAAGGTTTGAA+TGG | - | chr3_4:7643108-7643127 | None:intergenic | 40.0% |
| ATTGTTTAAACCCTTGGCCT+TGG | + | chr3_4:7643312-7643331 | Msa0488280:intron | 40.0% | |
| ! | TTGTTTAAACCCTTGGCCTT+GGG | + | chr3_4:7643313-7643332 | Msa0488280:intron | 40.0% |
| TCTGCTTCTGCTGGTAAATA+TGG | + | chr3_4:7643516-7643535 | Msa0488280:intron | 40.0% | |
| TTCTGCTGGTAAATATGGCT+TGG | + | chr3_4:7643521-7643540 | Msa0488280:intron | 40.0% | |
| TCTGCTGGTAAATATGGCTT+GGG | + | chr3_4:7643522-7643541 | Msa0488280:intron | 40.0% | |
| TGAGCTATGAAGCTTAGACA+TGG | + | chr3_4:7643802-7643821 | Msa0488280:intron | 40.0% | |
| TCTGCTACTGGTAGTAAAGT+AGG | + | chr3_4:7643939-7643958 | Msa0488280:intron | 40.0% | |
| TTGATGTTGTGTTCGATGTG+TGG | + | chr3_4:7644127-7644146 | Msa0488280:intron | 40.0% | |
| !!! | TGGACAGGATTTTTTCAGCA+AGG | + | chr3_4:7644672-7644691 | Msa0488280:intron | 40.0% |
| !!! | CAAGGCTACATCTTTTTTGC+TGG | + | chr3_4:7644690-7644709 | Msa0488280:five_prime_UTR | 40.0% |
| !! | GATTAGTTGATGGAAGTGAC+GGG | + | chr3_4:7644752-7644771 | Msa0488280:CDS | 40.0% |
| !! | ATTAGTTGATGGAAGTGACG+GGG | + | chr3_4:7644753-7644772 | Msa0488280:CDS | 40.0% |
| ! | AGTTTCTGGGGATGGTAATT+TGG | + | chr3_4:7644780-7644799 | Msa0488280:CDS | 40.0% |
| ! | GTTTCTGGGGATGGTAATTT+GGG | + | chr3_4:7644781-7644800 | Msa0488280:CDS | 40.0% |
| TTAAGCGATGCTAAACACAG+TGG | + | chr3_4:7645045-7645064 | Msa0488280:intron | 40.0% | |
| TGCTAAACACAGTGGAAAGT+CGG | + | chr3_4:7645053-7645072 | Msa0488280:intron | 40.0% | |
| TTTGTCGTGGTTCTTGTATG+AGG | - | chr3_4:7645525-7645544 | None:intergenic | 40.0% | |
| !! | GTTTCTTACCGTTTTTGTCG+TGG | - | chr3_4:7645538-7645557 | None:intergenic | 40.0% |
| ! | AGTTATTCTGGGAGAGAGTT+GGG | + | chr3_4:7645843-7645862 | Msa0488280:CDS | 40.0% |
| CATGGTCATGATCAGAGATA+CGG | - | chr3_4:7645884-7645903 | None:intergenic | 40.0% | |
| TGATCATGACCATGCTGTTA+AGG | + | chr3_4:7645890-7645909 | Msa0488280:CDS | 40.0% | |
| CATATGGTTCCTTAACAGCA+TGG | - | chr3_4:7645902-7645921 | None:intergenic | 40.0% | |
| GCTGTTAAGGAACCATATGA+AGG | + | chr3_4:7645903-7645922 | Msa0488280:CDS | 40.0% | |
| TAAGGAACCATATGAAGGCA+TGG | + | chr3_4:7645908-7645927 | Msa0488280:CDS | 40.0% | |
| TAATGCGTGTGATGTCTTGT+CGG | + | chr3_4:7645994-7646013 | Msa0488280:CDS | 40.0% | |
| CTTATTACATCCAAACCTGC+GGG | - | chr3_4:7646048-7646067 | None:intergenic | 40.0% | |
| CCTTATTACATCCAAACCTG+CGG | - | chr3_4:7646049-7646068 | None:intergenic | 40.0% | |
| CAGGTTTGGATGTAATAAGG+AGG | + | chr3_4:7646049-7646068 | Msa0488280:CDS | 40.0% | |
| GTCATTGTGTCAGCATACAA+GGG | + | chr3_4:7646072-7646091 | Msa0488280:CDS | 40.0% | |
| AGTATGATCAGTCCGGAAAA+TGG | + | chr3_4:7646162-7646181 | Msa0488280:CDS | 40.0% | |
| GTATGATCAGTCCGGAAAAT+GGG | + | chr3_4:7646163-7646182 | Msa0488280:CDS | 40.0% | |
| TCTTTCTTCCATACATGCCT+GGG | - | chr3_4:7646372-7646391 | None:intergenic | 40.0% | |
| TTCTTTCTTCCATACATGCC+TGG | - | chr3_4:7646373-7646392 | None:intergenic | 40.0% | |
| AGGCATGTATGGAAGAAAGA+AGG | + | chr3_4:7646372-7646391 | Msa0488280:intron | 40.0% | |
| TAAAACGTTGTATCGTGCCT+TGG | + | chr3_4:7646443-7646462 | Msa0488280:intron | 40.0% | |
| CCAAATCTTTCCTCACAAAG+AGG | - | chr3_4:7646527-7646546 | None:intergenic | 40.0% | |
| CCTCTTTGTGAGGAAAGATT+TGG | + | chr3_4:7646524-7646543 | Msa0488280:intron | 40.0% | |
| AGGAACTAACAGTAGAGCTT+CGG | + | chr3_4:7646674-7646693 | Msa0488280:CDS | 40.0% | |
| TCCAACACCTTCATTGTGTT+GGG | + | chr3_4:7646983-7647002 | Msa0488280:intron | 40.0% | |
| CTTCAAACCCAACACAATGA+AGG | - | chr3_4:7646993-7647012 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTTTGA+AGG | + | chr3_4:7646991-7647010 | Msa0488280:intron | 40.0% | |
| TCATTGTGTTGGGTTTGAAG+GGG | + | chr3_4:7646993-7647012 | Msa0488280:intron | 40.0% | |
| GAATAGATGCATCCTTGCAT+TGG | - | chr3_4:7647235-7647254 | None:intergenic | 40.0% | |
| GATGCATCTATTCCAATGCA+AGG | + | chr3_4:7647242-7647261 | Msa0488280:intron | 40.0% | |
| GCATTGGAATATCCTTGCAT+TGG | - | chr3_4:7647257-7647276 | None:intergenic | 40.0% | |
| TGCAAGGATATTCCAATGCA+AGG | + | chr3_4:7647258-7647277 | Msa0488280:intron | 40.0% | |
| GTATAGATGCATCCTTGCAT+TGG | - | chr3_4:7647273-7647292 | None:intergenic | 40.0% | |
| GTATAGATGCATCCTTGCAT+TGG | - | chr3_4:7647273-7647292 | None:intergenic | 40.0% | |
| GTATAGATGCATCCTTGCAT+TGG | - | chr3_4:7647273-7647292 | None:intergenic | 40.0% | |
| TTACGTGTTATGCAGAATGG+AGG | + | chr3_4:7647675-7647694 | Msa0488280:intron | 40.0% | |
| TACGTGTTATGCAGAATGGA+GGG | + | chr3_4:7647676-7647695 | Msa0488280:intron | 40.0% | |
| !! | CTAGTCTTGTGACATAGAGT+TGG | + | chr3_4:7647787-7647806 | Msa0488280:three_prime_UTR | 40.0% |
| !! | TCGCACTTGGTTCTACTTCT+AGG | - | chr3_4:7643012-7643031 | None:intergenic | 45.0% |
| TCAACGTGAGAGAGAGTCTA+AGG | - | chr3_4:7643117-7643136 | None:intergenic | 45.0% | |
| !! | ACTAAGTGGTGTTGGCTACA+TGG | - | chr3_4:7644244-7644263 | None:intergenic | 45.0% |
| ATGTAGCCAACACCACTTAG+TGG | + | chr3_4:7644243-7644262 | Msa0488280:intron | 45.0% | |
| TGTAGCCAACACCACTTAGT+GGG | + | chr3_4:7644244-7644263 | Msa0488280:intron | 45.0% | |
| CTTATCCCACTAAGTGGTGT+TGG | - | chr3_4:7644252-7644271 | None:intergenic | 45.0% | |
| CAACACCACTTAGTGGGATA+AGG | + | chr3_4:7644250-7644269 | Msa0488280:intron | 45.0% | |
| GAATTCCTGCATCCTGTTCA+TGG | + | chr3_4:7644890-7644909 | Msa0488280:intron | 45.0% | |
| TGTGTTGTAGCTATGTACCC+TGG | + | chr3_4:7645170-7645189 | Msa0488280:intron | 45.0% | |
| TTGAGTCTTGCATGCTCTGT+TGG | - | chr3_4:7645244-7645263 | None:intergenic | 45.0% | |
| GGGACACTGAGAAAGATGAA+TGG | + | chr3_4:7645289-7645308 | Msa0488280:intron | 45.0% | |
| AATGAAGGAAAAGGCGATGC+AGG | + | chr3_4:7645445-7645464 | Msa0488280:intron | 45.0% | |
| ! | TGGGAAAGAGCTTCTGGTTA+AGG | + | chr3_4:7645468-7645487 | Msa0488280:intron | 45.0% |
| !! | GTCTCTTTGAGACAGACTAC+TGG | - | chr3_4:7645560-7645579 | None:intergenic | 45.0% |
| CTGTCTCAAAGAGACATCAC+CGG | + | chr3_4:7645565-7645584 | Msa0488280:intron | 45.0% | |
| ! | TCTAAAGGGTTTTTCTCCCC+AGG | - | chr3_4:7645601-7645620 | None:intergenic | 45.0% |
| TGACAGTGGAACCGAATGAT+GGG | + | chr3_4:7645805-7645824 | Msa0488280:intron | 45.0% | |
| !! | ACCGAATGATGGGTGTAGAT+CGG | + | chr3_4:7645815-7645834 | Msa0488280:CDS | 45.0% |
| TCCGATCTACACCCATCATT+CGG | - | chr3_4:7645819-7645838 | None:intergenic | 45.0% | |
| ! | GAGTTATTCTGGGAGAGAGT+TGG | + | chr3_4:7645842-7645861 | Msa0488280:CDS | 45.0% |
| GATGAATATGGCCGACATGT+AGG | + | chr3_4:7645966-7645985 | Msa0488280:CDS | 45.0% | |
| CCGCAGGTTTGGATGTAATA+AGG | + | chr3_4:7646046-7646065 | Msa0488280:CDS | 45.0% | |
| GGTCATTGTGTCAGCATACA+AGG | + | chr3_4:7646071-7646090 | Msa0488280:CDS | 45.0% | |
| GTCAGCATACAAGGGAAACT+TGG | + | chr3_4:7646080-7646099 | Msa0488280:CDS | 45.0% | |
| TTGGTCCAGTTCGTAAACCA+AGG | + | chr3_4:7646099-7646118 | Msa0488280:CDS | 45.0% | |
| TGGTCCAGTTCGTAAACCAA+GGG | + | chr3_4:7646100-7646119 | Msa0488280:CDS | 45.0% | |
| ATATTGTGCCCAGGCATGTA+TGG | + | chr3_4:7646361-7646380 | Msa0488280:intron | 45.0% | |
| CTGGTGCAAAAGCTCTTCTA+TGG | - | chr3_4:7646827-7646846 | None:intergenic | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr3_4:7646984-7647003 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | + | chr3_4:7646982-7647001 | Msa0488280:intron | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | - | chr3_4:7646987-7647006 | None:intergenic | 45.0% |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | - | chr3_4:7647081-7647100 | None:intergenic | 45.0% |
| !! | CAATGCAAAACCGGCTTGTA+AGG | - | chr3_4:7647087-7647106 | None:intergenic | 45.0% |
| !! | CTTACAAGCCGGTTTTGCAT+TGG | + | chr3_4:7647085-7647104 | Msa0488280:intron | 45.0% |
| !!! | TTTTATTTTATATATTTTGA+TGG | + | chr3_4:7643236-7643255 | Msa0488280:intron | 5.0% |
| ACTATGCAACCCAAGGCCAA+GGG | - | chr3_4:7643325-7643344 | None:intergenic | 50.0% | |
| AACTATGCAACCCAAGGCCA+AGG | - | chr3_4:7643326-7643345 | None:intergenic | 50.0% | |
| ! | TGGCCTTGGGTTGCATAGTT+CGG | + | chr3_4:7643326-7643345 | Msa0488280:intron | 50.0% |
| AACCCGAACTATGCAACCCA+AGG | - | chr3_4:7643332-7643351 | None:intergenic | 50.0% | |
| ! | TCACGGTTTTCTGCTTCTGC+TGG | + | chr3_4:7643507-7643526 | Msa0488280:intron | 50.0% |
| CACGGACACTGTAAACGACA+TGG | + | chr3_4:7643648-7643667 | Msa0488280:intron | 50.0% | |
| GCACAGACACTCCTCGAATT+AGG | - | chr3_4:7643764-7643783 | None:intergenic | 50.0% | |
| GATGTGTGTGTGTGTGTCAG+TGG | - | chr3_4:7643840-7643859 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3_4:7644258-7644277 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3_4:7644255-7644274 | Msa0488280:intron | 50.0% | |
| CTAAGCCATGAACAGGATGC+AGG | - | chr3_4:7644898-7644917 | None:intergenic | 50.0% | |
| CTGCATCCTGTTCATGGCTT+AGG | + | chr3_4:7644896-7644915 | Msa0488280:intron | 50.0% | |
| TCCTGTTCATGGCTTAGGTC+TGG | + | chr3_4:7644901-7644920 | Msa0488280:intron | 50.0% | |
| ACCAGACCTAAGCCATGAAC+AGG | - | chr3_4:7644905-7644924 | None:intergenic | 50.0% | |
| AAGGAAAAGGCGATGCAGGT+GGG | + | chr3_4:7645449-7645468 | Msa0488280:intron | 50.0% | |
| CAAAGAGACATCACCGGTAC+AGG | + | chr3_4:7645571-7645590 | Msa0488280:intron | 50.0% | |
| ATCACCGGTACAGGTTATCC+TGG | + | chr3_4:7645580-7645599 | Msa0488280:intron | 50.0% | |
| TCACCGGTACAGGTTATCCT+GGG | + | chr3_4:7645581-7645600 | Msa0488280:intron | 50.0% | |
| GTGACAGTGGAACCGAATGA+TGG | + | chr3_4:7645804-7645823 | Msa0488280:intron | 50.0% | |
| TAAACCAAGGGCCAGCACTA+GGG | + | chr3_4:7646112-7646131 | Msa0488280:CDS | 50.0% | |
| CTTACAACCTTCCCTAGTGC+TGG | - | chr3_4:7646126-7646145 | None:intergenic | 50.0% | |
| CAGCACTAGGGAAGGTTGTA+AGG | + | chr3_4:7646124-7646143 | Msa0488280:CDS | 50.0% | |
| ATTGTTTGGCGTGCTTCACG+TGG | - | chr3_4:7646236-7646255 | None:intergenic | 50.0% | |
| ACGTGAAGCACGCCAAACAA+TGG | + | chr3_4:7646235-7646254 | Msa0488280:CDS | 50.0% | |
| ACATAATGCAGGGCTACGTC+TGG | - | chr3_4:7646846-7646865 | None:intergenic | 50.0% | |
| CTAGGGGAGAACTGCAATGA+AGG | - | chr3_4:7646924-7646943 | None:intergenic | 50.0% | |
| ATGCCGCAATTAGGCGACTA+GGG | - | chr3_4:7646941-7646960 | None:intergenic | 50.0% | |
| AATGCCGCAATTAGGCGACT+AGG | - | chr3_4:7646942-7646961 | None:intergenic | 50.0% | |
| AGTCGCCTAATTGCGGCATT+TGG | + | chr3_4:7646942-7646961 | Msa0488280:intron | 50.0% | |
| GTCGCCTAATTGCGGCATTT+GGG | + | chr3_4:7646943-7646962 | Msa0488280:intron | 50.0% | |
| GCAACCCAAATGCCGCAATT+AGG | - | chr3_4:7646950-7646969 | None:intergenic | 50.0% | |
| TGTGTTGGGTTTGAAGGGGT+CGG | + | chr3_4:7646997-7647016 | Msa0488280:intron | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3_4:7647082-7647101 | None:intergenic | 50.0% |
| ! | GGCCTTGGGTTGCATAGTTC+GGG | + | chr3_4:7643327-7643346 | Msa0488280:intron | 55.0% |
| ACACTAGTGTGTCCGACTCC+AGG | + | chr3_4:7643733-7643752 | Msa0488280:intron | 55.0% | |
| CACTAGTGTGTCCGACTCCA+GGG | + | chr3_4:7643734-7643753 | Msa0488280:intron | 55.0% | |
| AATTAGGCGTGCCCTGGAGT+CGG | - | chr3_4:7643748-7643767 | None:intergenic | 55.0% | |
| GTGTGTGTCAGTGGTGTGTC+TGG | - | chr3_4:7643831-7643850 | None:intergenic | 55.0% | |
| !! | AGTTGATGGAAGTGACGGGG+CGG | + | chr3_4:7644756-7644775 | Msa0488280:CDS | 55.0% |
| GAAGGAAAAGGCGATGCAGG+TGG | + | chr3_4:7645448-7645467 | Msa0488280:intron | 55.0% | |
| TGCAGGTGGGAAAGAGCTTC+TGG | + | chr3_4:7645462-7645481 | Msa0488280:intron | 55.0% | |
| CACCGGTACAGGTTATCCTG+GGG | + | chr3_4:7645582-7645601 | Msa0488280:intron | 55.0% | |
| CTCCCCAGGATAACCTGTAC+CGG | - | chr3_4:7645587-7645606 | None:intergenic | 55.0% | |
| TGTGATGTCTTGTCGGCGCT+CGG | + | chr3_4:7646001-7646020 | Msa0488280:CDS | 55.0% | |
| CTGGCCCTTGGTTTACGAAC+TGG | - | chr3_4:7646107-7646126 | None:intergenic | 55.0% | |
| GTAAACCAAGGGCCAGCACT+AGG | + | chr3_4:7646111-7646130 | Msa0488280:CDS | 55.0% | |
| GGGGAGAACTGCAATGAAGG+CGG | - | chr3_4:7646921-7646940 | None:intergenic | 55.0% | |
| CTCCCCTAGTCGCCTAATTG+CGG | + | chr3_4:7646935-7646954 | Msa0488280:intron | 55.0% | |
| TGCCGCAATTAGGCGACTAG+GGG | - | chr3_4:7646940-7646959 | None:intergenic | 55.0% | |
| GTTATGCAGAATGGAGGGCG+TGG | + | chr3_4:7647681-7647700 | Msa0488280:intron | 55.0% | |
| TCCAGGGCACGCCTAATTCG+AGG | + | chr3_4:7643750-7643769 | Msa0488280:intron | 60.0% | |
| TCCTCGAATTAGGCGTGCCC+TGG | - | chr3_4:7643754-7643773 | None:intergenic | 60.0% | |
| ! | AGTGACGGGGCGGAAGTTTC+TGG | + | chr3_4:7644766-7644785 | Msa0488280:CDS | 60.0% |
| ! | GTGACGGGGCGGAAGTTTCT+GGG | + | chr3_4:7644767-7644786 | Msa0488280:CDS | 60.0% |
| TGACGGGGCGGAAGTTTCTG+GGG | + | chr3_4:7644768-7644787 | Msa0488280:CDS | 60.0% | |
| TGTCGGCGCTCGGAAAGAGA+TGG | + | chr3_4:7646011-7646030 | Msa0488280:CDS | 60.0% | |
| GGCGCTCGGAAAGAGATGGT+AGG | + | chr3_4:7646015-7646034 | Msa0488280:CDS | 60.0% | |
| ATGGTAGGATTCTCGCCCGC+AGG | + | chr3_4:7646030-7646049 | Msa0488280:CDS | 60.0% | |
| AGGATTCTCGCCCGCAGGTT+TGG | + | chr3_4:7646035-7646054 | Msa0488280:CDS | 60.0% | |
| GCAGCCCTCACCTTACAAGC+CGG | + | chr3_4:7647074-7647093 | Msa0488280:intron | 60.0% | |
| ! | GGGGCGGAAGTTTCTGGGGA+TGG | + | chr3_4:7644772-7644791 | Msa0488280:CDS | 65.0% |
| !! | CCTTCCCTAGTGCTGGCCCT+TGG | - | chr3_4:7646119-7646138 | None:intergenic | 65.0% |
| CCAAGGGCCAGCACTAGGGA+AGG | + | chr3_4:7646116-7646135 | Msa0488280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 7642917 | 7647871 | 7642917 | ID=Msa0488280;Name=Msa0488280 |
| chr3_4 | mRNA | 7642917 | 7647871 | 7642917 | ID=Msa0488280-mRNA-1;Parent=Msa0488280;Name=Msa0488280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=301|1|1|1|0.5|0.2|5|195|235 |
| chr3_4 | exon | 7642917 | 7643154 | 7642917 | ID=Msa0488280-mRNA-1:exon:2654;Parent=Msa0488280-mRNA-1 |
| chr3_4 | exon | 7644679 | 7644802 | 7644679 | ID=Msa0488280-mRNA-1:exon:2655;Parent=Msa0488280-mRNA-1 |
| chr3_4 | exon | 7645811 | 7646256 | 7645811 | ID=Msa0488280-mRNA-1:exon:2656;Parent=Msa0488280-mRNA-1 |
| chr3_4 | exon | 7646652 | 7646865 | 7646652 | ID=Msa0488280-mRNA-1:exon:2657;Parent=Msa0488280-mRNA-1 |
| chr3_4 | exon | 7647690 | 7647871 | 7647690 | ID=Msa0488280-mRNA-1:exon:2658;Parent=Msa0488280-mRNA-1 |
| chr3_4 | five_prime_UTR | 7642917 | 7643154 | 7642917 | ID=Msa0488280-mRNA-1:five_prime_utr;Parent=Msa0488280-mRNA-1 |
| chr3_4 | five_prime_UTR | 7644679 | 7644741 | 7644679 | ID=Msa0488280-mRNA-1:five_prime_utr;Parent=Msa0488280-mRNA-1 |
| chr3_4 | CDS | 7644742 | 7644802 | 7644742 | ID=Msa0488280-mRNA-1:cds;Parent=Msa0488280-mRNA-1 |
| chr3_4 | CDS | 7645811 | 7646256 | 7645811 | ID=Msa0488280-mRNA-1:cds;Parent=Msa0488280-mRNA-1 |
| chr3_4 | CDS | 7646652 | 7646852 | 7646652 | ID=Msa0488280-mRNA-1:cds;Parent=Msa0488280-mRNA-1 |
| chr3_4 | three_prime_UTR | 7646853 | 7646865 | 7646853 | ID=Msa0488280-mRNA-1:three_prime_utr;Parent=Msa0488280-mRNA-1 |
| chr3_4 | three_prime_UTR | 7647690 | 7647871 | 7647690 | ID=Msa0488280-mRNA-1:three_prime_utr;Parent=Msa0488280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
