Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423900 | sp|Q9SZL8|FRS5_ARATH | 52.336 | 107 | 49 | 1 | 55 | 159 | 72 | 178 | 2.50e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423900 | A0A072UTY6 | 93.191 | 235 | 10 | 1 | 1 | 235 | 1 | 229 | 5.26e-158 | 446 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1423900 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0488280 | Msa1423900 | 0.957408 | 2.917633e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423900 | MtrunA17_Chr3g0078041 | 93.191 | 235 | 10 | 1 | 1 | 235 | 1 | 229 | 1.01e-161 | 446 |
| Msa1423900 | MtrunA17_Chr7g0233911 | 49.479 | 192 | 91 | 2 | 41 | 227 | 14 | 204 | 1.14e-62 | 195 |
| Msa1423900 | MtrunA17_Chr4g0033611 | 42.373 | 177 | 92 | 3 | 52 | 222 | 72 | 244 | 1.60e-38 | 134 |
| Msa1423900 | MtrunA17_Chr2g0329421 | 40.217 | 184 | 101 | 3 | 52 | 230 | 23 | 202 | 1.81e-38 | 132 |
| Msa1423900 | MtrunA17_Chr2g0329361 | 37.824 | 193 | 100 | 5 | 50 | 226 | 55 | 243 | 3.90e-37 | 130 |
| Msa1423900 | MtrunA17_Chr5g0448761 | 51.852 | 108 | 49 | 2 | 55 | 159 | 59 | 166 | 1.68e-22 | 95.9 |
| Msa1423900 | MtrunA17_Chr2g0287061 | 36.567 | 134 | 71 | 1 | 55 | 188 | 28 | 147 | 1.34e-20 | 90.1 |
| Msa1423900 | MtrunA17_Chr2g0287061 | 32.215 | 149 | 84 | 2 | 38 | 183 | 162 | 296 | 6.57e-18 | 82.4 |
| Msa1423900 | MtrunA17_Chr2g0329031 | 32.609 | 138 | 85 | 3 | 51 | 188 | 9 | 138 | 5.85e-17 | 79.7 |
| Msa1423900 | MtrunA17_Chr5g0440451 | 39.815 | 108 | 51 | 1 | 53 | 160 | 40 | 133 | 1.32e-16 | 78.6 |
| Msa1423900 | MtrunA17_Chr3g0080351 | 34.127 | 126 | 71 | 1 | 55 | 168 | 75 | 200 | 9.13e-16 | 76.3 |
| Msa1423900 | MtrunA17_Chr1g0207551 | 35.238 | 105 | 65 | 2 | 55 | 159 | 33 | 134 | 1.80e-15 | 75.1 |
| Msa1423900 | MtrunA17_Chr1g0202341 | 35.115 | 131 | 81 | 4 | 55 | 183 | 50 | 178 | 3.63e-15 | 74.3 |
| Msa1423900 | MtrunA17_Chr6g0458391 | 37.963 | 108 | 66 | 1 | 56 | 163 | 225 | 331 | 1.44e-14 | 72.4 |
| Msa1423900 | MtrunA17_Chr6g0458391 | 36.190 | 105 | 65 | 2 | 56 | 160 | 91 | 193 | 5.02e-12 | 65.1 |
| Msa1423900 | MtrunA17_Chr3g0082121 | 38.136 | 118 | 66 | 3 | 56 | 167 | 43 | 159 | 4.08e-14 | 71.2 |
| Msa1423900 | MtrunA17_Chr5g0401121 | 38.095 | 105 | 63 | 2 | 56 | 159 | 56 | 159 | 8.09e-13 | 64.3 |
| Msa1423900 | MtrunA17_Chr2g0291591 | 28.049 | 164 | 96 | 6 | 34 | 186 | 40 | 192 | 2.32e-11 | 63.2 |
| Msa1423900 | MtrunA17_Chr1g0203721 | 35.714 | 98 | 62 | 1 | 59 | 156 | 66 | 162 | 5.62e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423900 | AT2G43280.1 | 73.224 | 183 | 48 | 1 | 50 | 232 | 17 | 198 | 4.43e-100 | 290 |
| Msa1423900 | AT2G43280.2 | 74.233 | 163 | 42 | 0 | 70 | 232 | 1 | 163 | 4.09e-92 | 268 |
| Msa1423900 | AT3G07500.1 | 47.872 | 188 | 91 | 3 | 46 | 227 | 23 | 209 | 2.39e-51 | 166 |
| Msa1423900 | AT4G12850.1 | 43.646 | 181 | 90 | 2 | 50 | 226 | 5 | 177 | 2.43e-46 | 152 |
| Msa1423900 | AT3G59470.3 | 46.629 | 178 | 84 | 4 | 55 | 226 | 69 | 241 | 8.83e-43 | 145 |
| Msa1423900 | AT3G59470.1 | 46.629 | 178 | 84 | 4 | 55 | 226 | 69 | 241 | 8.83e-43 | 145 |
| Msa1423900 | AT3G59470.2 | 46.629 | 178 | 84 | 4 | 55 | 226 | 81 | 253 | 1.24e-42 | 145 |
| Msa1423900 | AT4G12850.2 | 50.442 | 113 | 44 | 2 | 50 | 158 | 5 | 109 | 1.25e-30 | 110 |
| Msa1423900 | AT4G12850.4 | 51.376 | 109 | 49 | 1 | 50 | 158 | 5 | 109 | 1.37e-30 | 110 |
| Msa1423900 | AT4G38180.1 | 52.336 | 107 | 49 | 1 | 55 | 159 | 72 | 178 | 2.54e-24 | 101 |
| Msa1423900 | AT2G32250.2 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.64e-18 | 82.8 |
| Msa1423900 | AT2G32250.4 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.64e-18 | 82.8 |
| Msa1423900 | AT2G32250.6 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.77e-18 | 82.8 |
| Msa1423900 | AT2G32250.1 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.77e-18 | 82.8 |
| Msa1423900 | AT2G32250.3 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.77e-18 | 82.8 |
| Msa1423900 | AT2G32250.5 | 34.351 | 131 | 80 | 2 | 52 | 182 | 34 | 158 | 6.93e-18 | 82.8 |
| Msa1423900 | AT2G32250.8 | 34.146 | 123 | 75 | 2 | 60 | 182 | 1 | 117 | 1.04e-16 | 79.3 |
| Msa1423900 | AT2G32250.7 | 34.146 | 123 | 75 | 2 | 60 | 182 | 1 | 117 | 1.12e-16 | 79.3 |
| Msa1423900 | AT3G06250.2 | 40.385 | 104 | 48 | 1 | 55 | 158 | 189 | 278 | 2.51e-16 | 78.2 |
| Msa1423900 | AT3G06250.2 | 35.088 | 114 | 60 | 1 | 55 | 168 | 27 | 126 | 1.66e-15 | 75.9 |
| Msa1423900 | AT3G06250.1 | 40.385 | 104 | 48 | 1 | 55 | 158 | 189 | 278 | 2.51e-16 | 78.2 |
| Msa1423900 | AT3G06250.1 | 35.088 | 114 | 60 | 1 | 55 | 168 | 27 | 126 | 1.66e-15 | 75.9 |
| Msa1423900 | AT3G06250.3 | 40.385 | 104 | 48 | 1 | 55 | 158 | 189 | 278 | 2.51e-16 | 78.2 |
| Msa1423900 | AT3G06250.3 | 35.088 | 114 | 60 | 1 | 55 | 168 | 27 | 126 | 1.66e-15 | 75.9 |
| Msa1423900 | AT4G15090.1 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa1423900 | AT4G15090.5 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa1423900 | AT4G15090.3 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa1423900 | AT4G15090.2 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa1423900 | AT4G15090.4 | 33.582 | 134 | 78 | 3 | 33 | 159 | 24 | 153 | 6.17e-16 | 77.0 |
| Msa1423900 | AT5G18960.2 | 39.423 | 104 | 49 | 1 | 55 | 158 | 210 | 299 | 6.58e-16 | 77.0 |
| Msa1423900 | AT5G18960.2 | 33.600 | 125 | 62 | 2 | 55 | 172 | 42 | 152 | 9.25e-16 | 76.6 |
| Msa1423900 | AT5G18960.1 | 39.423 | 104 | 49 | 1 | 55 | 158 | 210 | 299 | 6.58e-16 | 77.0 |
| Msa1423900 | AT5G18960.1 | 33.600 | 125 | 62 | 2 | 55 | 172 | 42 | 152 | 9.25e-16 | 76.6 |
| Msa1423900 | AT2G27110.2 | 34.247 | 146 | 71 | 5 | 16 | 161 | 18 | 138 | 5.35e-15 | 74.3 |
| Msa1423900 | AT2G27110.1 | 34.247 | 146 | 71 | 5 | 16 | 161 | 18 | 138 | 5.35e-15 | 74.3 |
| Msa1423900 | AT1G76320.2 | 33.099 | 142 | 88 | 4 | 60 | 200 | 1 | 136 | 1.04e-14 | 73.6 |
| Msa1423900 | AT1G76320.1 | 33.099 | 142 | 88 | 4 | 60 | 200 | 1 | 136 | 1.12e-14 | 73.2 |
| Msa1423900 | AT1G76320.4 | 33.099 | 142 | 88 | 4 | 60 | 200 | 1 | 136 | 1.12e-14 | 73.2 |
| Msa1423900 | AT1G76320.3 | 38.679 | 106 | 59 | 3 | 60 | 165 | 1 | 100 | 1.29e-14 | 73.2 |
| Msa1423900 | AT3G22170.2 | 33.582 | 134 | 72 | 3 | 55 | 176 | 69 | 197 | 2.00e-14 | 72.4 |
| Msa1423900 | AT3G22170.1 | 33.582 | 134 | 72 | 3 | 55 | 176 | 69 | 197 | 2.00e-14 | 72.4 |
| Msa1423900 | AT4G19990.5 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.03e-14 | 71.2 |
| Msa1423900 | AT4G19990.3 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.03e-14 | 71.2 |
| Msa1423900 | AT4G19990.4 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.03e-14 | 71.2 |
| Msa1423900 | AT4G19990.7 | 32.308 | 130 | 72 | 2 | 45 | 160 | 24 | 151 | 5.30e-14 | 71.2 |
| Msa1423900 | AT4G19990.6 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.52e-14 | 71.2 |
| Msa1423900 | AT4G19990.2 | 32.308 | 130 | 72 | 2 | 45 | 160 | 10 | 137 | 5.52e-14 | 71.2 |
Find 80 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTGGGGATGGTAATT+TGG | 0.158133 | tig0025591:-48419 | Msa1423900:CDS |
| TCGCACTTGGTTCTACTTCT+AGG | 0.182777 | tig0025591:+50190 | None:intergenic |
| AGTGACGGGGCGGAAGTTTC+TGG | 0.203404 | tig0025591:-48433 | Msa1423900:CDS |
| GTTTCTGGGGATGGTAATTT+GGG | 0.242501 | tig0025591:-48418 | Msa1423900:intron |
| AGATCGGAAAAGAGTTATTC+TGG | 0.296771 | tig0025591:-47368 | Msa1423900:CDS |
| AGTATGATCAGTCCGGAAAA+TGG | 0.304694 | tig0025591:-47037 | Msa1423900:CDS |
| CCATGTTGCATAACAAAGTA+TGG | 0.327959 | tig0025591:+48476 | None:intergenic |
| AGGATTCTCGCCCGCAGGTT+TGG | 0.350053 | tig0025591:-47164 | Msa1423900:CDS |
| CCGCAGGTTTGGATGTAATA+AGG | 0.351849 | tig0025591:-47153 | Msa1423900:CDS |
| ATTATGGATTTACCATTGTT+TGG | 0.357489 | tig0025591:+46952 | None:intergenic |
| TTGATTTGTTTCTCTGAAAT+CGG | 0.368015 | tig0025591:-50066 | Msa1423900:intron |
| TGAGAAGGATAAGAAAATTC+AGG | 0.371151 | tig0025591:-46545 | Msa1423900:CDS |
| AGTTATTCTGGGAGAGAGTT+GGG | 0.374971 | tig0025591:-47356 | Msa1423900:CDS |
| TGATCATGACCATGCTGTTA+AGG | 0.378319 | tig0025591:-47309 | Msa1423900:CDS |
| AGAGAGTCTAAGGTTTGAAT+GGG | 0.395400 | tig0025591:+50095 | None:intergenic |
| TCAACGTGAGAGAGAGTCTA+AGG | 0.397963 | tig0025591:+50085 | None:intergenic |
| ACAAATTCCATGCCTTCATA+TGG | 0.406605 | tig0025591:+47284 | None:intergenic |
| CTGGCCCTTGGTTTACGAAC+TGG | 0.417375 | tig0025591:+47095 | None:intergenic |
| GACAACGTTAAAGAGAGAAT+TGG | 0.418915 | tig0025591:+50257 | None:intergenic |
| TCCGATCTACACCCATCATT+CGG | 0.425751 | tig0025591:+47383 | None:intergenic |
| GAGAGAGTCTAAGGTTTGAA+TGG | 0.429484 | tig0025591:+50094 | None:intergenic |
| CTGGTGCAAAAGCTCTTCTA+TGG | 0.431453 | tig0025591:+46375 | None:intergenic |
| CCTTCCCTAGTGCTGGCCCT+TGG | 0.440050 | tig0025591:+47083 | None:intergenic |
| AAATATCTTAGCAGCATCTT+CGG | 0.446381 | tig0025591:+47259 | None:intergenic |
| AGTCATCACTAAAGGATAAG+AGG | 0.449248 | tig0025591:+45446 | None:intergenic |
| GAGTTATTCTGGGAGAGAGT+TGG | 0.452971 | tig0025591:-47357 | Msa1423900:CDS |
| CAGCACTAGGGAAGGTTGTA+AGG | 0.453970 | tig0025591:-47075 | Msa1423900:CDS |
| GGTCATTGTGTCAGCATACA+AGG | 0.462427 | tig0025591:-47128 | Msa1423900:CDS |
| GTGACGGGGCGGAAGTTTCT+GGG | 0.469581 | tig0025591:-48432 | Msa1423900:CDS |
| GTATGATCAGTCCGGAAAAT+GGG | 0.472464 | tig0025591:-47036 | Msa1423900:CDS |
| AAATGTTATGTTCTGTTCAA+AGG | 0.474007 | tig0025591:-45474 | Msa1423900:three_prime_UTR |
| ATGGAATCTAGATTAGTTGA+TGG | 0.477267 | tig0025591:-48457 | Msa1423900:CDS |
| AGGAACTAACAGTAGAGCTT+CGG | 0.480103 | tig0025591:-46525 | Msa1423900:CDS |
| GTCAGCATACAAGGGAAACT+TGG | 0.481454 | tig0025591:-47119 | Msa1423900:CDS |
| TAATGCGTGTGATGTCTTGT+CGG | 0.484944 | tig0025591:-47205 | Msa1423900:CDS |
| GTAAACCAAGGGCCAGCACT+AGG | 0.487984 | tig0025591:-47088 | Msa1423900:CDS |
| ACATAATGCAGGGCTACGTC+TGG | 0.504943 | tig0025591:+46356 | None:intergenic |
| CCATACTTTGTTATGCAACA+TGG | 0.507703 | tig0025591:-48476 | Msa1423900:exon |
| TAAATACTCACACATAATGC+AGG | 0.511345 | tig0025591:+46345 | None:intergenic |
| TGTGATGTCTTGTCGGCGCT+CGG | 0.527714 | tig0025591:-47198 | Msa1423900:CDS |
| ATGGTAGGATTCTCGCCCGC+AGG | 0.530043 | tig0025591:-47169 | Msa1423900:CDS |
| CATATCAAGTATGATCAGTC+CGG | 0.531806 | tig0025591:-47044 | Msa1423900:CDS |
| CTTACAACCTTCCCTAGTGC+TGG | 0.535860 | tig0025591:+47076 | None:intergenic |
| GATGAATATGGCCGACATGT+AGG | 0.539154 | tig0025591:-47233 | Msa1423900:CDS |
| GATCGGAAAAGAGTTATTCT+GGG | 0.541626 | tig0025591:-47367 | Msa1423900:CDS |
| CTAGTCTTGTGACATAGAGT+TGG | 0.545437 | tig0025591:-45412 | Msa1423900:three_prime_UTR |
| TAAACCAAGGGCCAGCACTA+GGG | 0.547162 | tig0025591:-47087 | Msa1423900:CDS |
| ACCGAATGATGGGTGTAGAT+CGG | 0.551733 | tig0025591:-47384 | Msa1423900:CDS |
| TAGCAAGTAGTCATCACTAA+AGG | 0.553528 | tig0025591:+45438 | None:intergenic |
| GATTAGTTGATGGAAGTGAC+GGG | 0.556222 | tig0025591:-48447 | Msa1423900:CDS |
| GTGACAGTGGAACCGAATGA+TGG | 0.566161 | tig0025591:-47395 | Msa1423900:intron |
| CTTATTACATCCAAACCTGC+GGG | 0.573213 | tig0025591:+47154 | None:intergenic |
| ATTGTTTGGCGTGCTTCACG+TGG | 0.576935 | tig0025591:+46966 | None:intergenic |
| GAGAGTCTAAGGTTTGAATG+GGG | 0.579968 | tig0025591:+50096 | None:intergenic |
| AGATTAGTTGATGGAAGTGA+CGG | 0.582091 | tig0025591:-48448 | Msa1423900:CDS |
| TACGTGTTATGCAGAATGGA+GGG | 0.583534 | tig0025591:-45523 | Msa1423900:intron |
| GTCATCACTAAAGGATAAGA+GGG | 0.584487 | tig0025591:+45447 | None:intergenic |
| GGGGCGGAAGTTTCTGGGGA+TGG | 0.587261 | tig0025591:-48427 | Msa1423900:CDS |
| TTACGTGTTATGCAGAATGG+AGG | 0.587814 | tig0025591:-45524 | Msa1423900:intron |
| GCTGTTAAGGAACCATATGA+AGG | 0.588056 | tig0025591:-47296 | Msa1423900:CDS |
| TAAGGAACCATATGAAGGCA+TGG | 0.594188 | tig0025591:-47291 | Msa1423900:CDS |
| TGACGGGGCGGAAGTTTCTG+GGG | 0.598363 | tig0025591:-48431 | Msa1423900:CDS |
| CCAAGGGCCAGCACTAGGGA+AGG | 0.608378 | tig0025591:-47083 | Msa1423900:CDS |
| CATATGGTTCCTTAACAGCA+TGG | 0.608918 | tig0025591:+47300 | None:intergenic |
| TGTCGGCGCTCGGAAAGAGA+TGG | 0.610372 | tig0025591:-47188 | Msa1423900:CDS |
| TGACAGTGGAACCGAATGAT+GGG | 0.614797 | tig0025591:-47394 | Msa1423900:intron |
| CATGGTCATGATCAGAGATA+CGG | 0.615572 | tig0025591:+47318 | None:intergenic |
| ACGTGAAGCACGCCAAACAA+TGG | 0.620174 | tig0025591:-46964 | Msa1423900:intron |
| TTGGTCCAGTTCGTAAACCA+AGG | 0.623231 | tig0025591:-47100 | Msa1423900:CDS |
| CAGGTTTGGATGTAATAAGG+AGG | 0.625678 | tig0025591:-47150 | Msa1423900:CDS |
| CCTTATTACATCCAAACCTG+CGG | 0.631158 | tig0025591:+47153 | None:intergenic |
| GCATTACAAATCCTACATGT+CGG | 0.642858 | tig0025591:+47222 | None:intergenic |
| AGGTTTGGATGTAATAAGGA+GGG | 0.648013 | tig0025591:-47149 | Msa1423900:CDS |
| AAATACTCACACATAATGCA+GGG | 0.651333 | tig0025591:+46346 | None:intergenic |
| TGGTCCAGTTCGTAAACCAA+GGG | 0.657286 | tig0025591:-47099 | Msa1423900:CDS |
| GTCATTGTGTCAGCATACAA+GGG | 0.663280 | tig0025591:-47127 | Msa1423900:CDS |
| GTTATGCAGAATGGAGGGCG+TGG | 0.684386 | tig0025591:-45518 | Msa1423900:intron |
| GGCGCTCGGAAAGAGATGGT+AGG | 0.693531 | tig0025591:-47184 | Msa1423900:CDS |
| AGTTGATGGAAGTGACGGGG+CGG | 0.718997 | tig0025591:-48443 | Msa1423900:CDS |
| ATTAGTTGATGGAAGTGACG+GGG | 0.720299 | tig0025591:-48446 | Msa1423900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATCAATTAAAAAATA+TGG | + | tig0025591:48771-48790 | None:intergenic | 10.0% |
| !! | ATATTATATTAAACTTTGTA+AGG | - | tig0025591:49755-49774 | Msa1423900:intron | 10.0% |
| !!! | TTTTTATATTAAACTTTGTA+AGG | - | tig0025591:49918-49937 | Msa1423900:intron | 10.0% |
| !!! | TTTTTATATTAAACTTTGTA+AGG | - | tig0025591:49918-49937 | Msa1423900:intron | 10.0% |
| !!! | TGATTTTCTCAAATTATTAT+CGG | + | tig0025591:46112-46131 | None:intergenic | 15.0% |
| !! | AGAAATGATAGAATTAAAAA+TGG | - | tig0025591:46590-46609 | Msa1423900:intron | 15.0% |
| !!! | AAATAAAAATCTTTTACTTG+TGG | - | tig0025591:47085-47104 | Msa1423900:CDS | 15.0% |
| !! | AAAATGAATTAGTATTATGA+GGG | - | tig0025591:47776-47795 | Msa1423900:intron | 15.0% |
| !!! | CATAATTTTCATTTCATTAA+GGG | + | tig0025591:47811-47830 | None:intergenic | 15.0% |
| !!! | TCATAATTTTCATTTCATTA+AGG | + | tig0025591:47812-47831 | None:intergenic | 15.0% |
| !! | TAATGAAATGAAAATTATGA+AGG | - | tig0025591:47812-47831 | Msa1423900:intron | 15.0% |
| !! | AATGAAATGAAAATTATGAA+GGG | - | tig0025591:47813-47832 | Msa1423900:intron | 15.0% |
| !! | ATAAAAAATTCATTCTATTC+AGG | + | tig0025591:47848-47867 | None:intergenic | 15.0% |
| !!! | AAGATATTTTATGATGAATA+TGG | - | tig0025591:48387-48406 | Msa1423900:intron | 15.0% |
| !!! | TCTTCATTTCTATATTTTTT+TGG | - | tig0025591:48849-48868 | Msa1423900:intron | 15.0% |
| !! | ATTATATTATATAACATCTC+TGG | - | tig0025591:48994-49013 | Msa1423900:intron | 15.0% |
| !!! | AATAGTTTAATAGTTTTTGT+TGG | - | tig0025591:49323-49342 | Msa1423900:intron | 15.0% |
| !! | GGAGTAAAAAAAAAAAATGA+TGG | + | tig0025591:45357-45376 | None:intergenic | 20.0% |
| !!! | TACAATTGTATTTGAAATCA+CGG | - | tig0025591:45923-45942 | Msa1423900:intron | 20.0% |
| !! | TATTAAAGAGAGTTTGAATA+GGG | - | tig0025591:46616-46635 | Msa1423900:intron | 20.0% |
| !! | AATATCTTCATATATGAGTA+TGG | - | tig0025591:46988-47007 | Msa1423900:CDS | 20.0% |
| !!! | CATTTTGGAATATAAATGAT+AGG | + | tig0025591:47762-47781 | None:intergenic | 20.0% |
| !!! | CTCATAATACTAATTCATTT+TGG | + | tig0025591:47777-47796 | None:intergenic | 20.0% |
| !! | CAAAATGAATTAGTATTATG+AGG | - | tig0025591:47775-47794 | Msa1423900:intron | 20.0% |
| !! | ATGAAATGAAAATTATGAAG+GGG | - | tig0025591:47814-47833 | Msa1423900:intron | 20.0% |
| !!! | TGATTGCTTTAAATGAAAAA+TGG | + | tig0025591:48138-48157 | None:intergenic | 20.0% |
| !!! | ATCCATAATTCTTATTTAAC+CGG | - | tig0025591:48694-48713 | Msa1423900:intron | 20.0% |
| !!! | GAAGCTAATATTATTGTTTT+TGG | - | tig0025591:48905-48924 | Msa1423900:intron | 20.0% |
| !! | TTATAAATAAACACTACACA+GGG | + | tig0025591:49558-49577 | None:intergenic | 20.0% |
| !! | TTTATAAATAAACACTACAC+AGG | + | tig0025591:49559-49578 | None:intergenic | 20.0% |
| ! | TTCAATCAACTAAAAAACGT+TGG | + | tig0025591:45494-45513 | None:intergenic | 25.0% |
| !!! | TTGATTTGTTTCTCTGAAAT+CGG | - | tig0025591:45566-45585 | Msa1423900:intron | 25.0% |
| ! | TTATTACATGTAGCAGAAAA+GGG | + | tig0025591:45990-46009 | None:intergenic | 25.0% |
| ! | ATTATTACATGTAGCAGAAA+AGG | + | tig0025591:45991-46010 | None:intergenic | 25.0% |
| ! | TTTAAGAAAATGACATGTGT+TGG | - | tig0025591:46307-46326 | Msa1423900:intron | 25.0% |
| ! | GAAACCATATTTACAATCAT+TGG | + | tig0025591:46423-46442 | None:intergenic | 25.0% |
| ! | GTATTAAAGAGAGTTTGAAT+AGG | - | tig0025591:46615-46634 | Msa1423900:intron | 25.0% |
| ! | TGACAAATACACTATGAAAA+TGG | + | tig0025591:46949-46968 | None:intergenic | 25.0% |
| !! | AAAGAATGCACTTTTATGTA+GGG | + | tig0025591:47033-47052 | None:intergenic | 25.0% |
| !! | AAAAGAATGCACTTTTATGT+AGG | + | tig0025591:47034-47053 | None:intergenic | 25.0% |
| !! | CTTTTATTGAAAGCAAAGTT+AGG | - | tig0025591:47049-47068 | Msa1423900:CDS | 25.0% |
| !! | CAAATTTTGAGCTAAAATGT+GGG | + | tig0025591:47436-47455 | None:intergenic | 25.0% |
| !! | ACAAATTTTGAGCTAAAATG+TGG | + | tig0025591:47437-47456 | None:intergenic | 25.0% |
| !! | TCTGTTGGAAATACTATTTT+TGG | + | tig0025591:47662-47681 | None:intergenic | 25.0% |
| !! | AAATTCCAAGTTGAAATGTT+TGG | + | tig0025591:47702-47721 | None:intergenic | 25.0% |
| ! | AAACATTTCAACTTGGAATT+TGG | - | tig0025591:47701-47720 | Msa1423900:intron | 25.0% |
| ! | AACATTTCAACTTGGAATTT+GGG | - | tig0025591:47702-47721 | Msa1423900:intron | 25.0% |
| ! | TTTATTCGATAGTTGAATGA+AGG | - | tig0025591:47863-47882 | Msa1423900:intron | 25.0% |
| ! | AAGAAACCTATAGTTATTAG+AGG | + | tig0025591:48058-48077 | None:intergenic | 25.0% |
| ! | ATGCAAAAATAAGTTATGCA+TGG | + | tig0025591:48183-48202 | None:intergenic | 25.0% |
| ! | AAGATAAATTATTGTGACAG+TGG | - | tig0025591:48224-48243 | Msa1423900:intron | 25.0% |
| ! | ATTATGGATTTACCATTGTT+TGG | + | tig0025591:48683-48702 | None:intergenic | 25.0% |
| ! | AACCGGTTAAATAAGAATTA+TGG | + | tig0025591:48699-48718 | None:intergenic | 25.0% |
| ! | ATAATTAACCAATGCAAAAC+CGG | + | tig0025591:49529-49548 | None:intergenic | 25.0% |
| !!! | TGATTAATTTTGTCTGAAGT+TGG | + | tig0025591:49803-49822 | None:intergenic | 25.0% |
| ! | AAAACAATAAAAGCTAGTAC+TGG | + | tig0025591:50066-50085 | None:intergenic | 25.0% |
| !!! | AGTACTAGCTTTTATTGTTT+TGG | - | tig0025591:50065-50084 | Msa1423900:intron | 25.0% |
| !! | TGAACAGAACATAACATTTT+AGG | + | tig0025591:50157-50176 | None:intergenic | 25.0% |
| ! | AAATGTTATGTTCTGTTCAA+AGG | - | tig0025591:50158-50177 | Msa1423900:five_prime_UTR | 25.0% |
| !! | TAAAAAACGTTGGTGTTGTT+GGG | + | tig0025591:45484-45503 | None:intergenic | 30.0% |
| GATGGTAAACTTCGTTTATT+TGG | - | tig0025591:45687-45706 | Msa1423900:intron | 30.0% | |
| GTAAACTTCGTTTATTTGGT+GGG | - | tig0025591:45691-45710 | Msa1423900:intron | 30.0% | |
| AGTAACAGATGGTTTCAAAA+TGG | - | tig0025591:45879-45898 | Msa1423900:intron | 30.0% | |
| ! | AGATGGTTTCAAAATGGTTT+TGG | - | tig0025591:45885-45904 | Msa1423900:intron | 30.0% |
| ! | GATGGTTTCAAAATGGTTTT+GGG | - | tig0025591:45886-45905 | Msa1423900:intron | 30.0% |
| TTACAATCATTGGCAGAAAA+GGG | + | tig0025591:46413-46432 | None:intergenic | 30.0% | |
| TTTACAATCATTGGCAGAAA+AGG | + | tig0025591:46414-46433 | None:intergenic | 30.0% | |
| TCTGCCAATGATTGTAAATA+TGG | - | tig0025591:46416-46435 | Msa1423900:CDS | 30.0% | |
| ! | TTGGTTACTTTCTCAGAAAA+GGG | + | tig0025591:46458-46477 | None:intergenic | 30.0% |
| ! | TTTGGTTACTTTCTCAGAAA+AGG | + | tig0025591:46459-46478 | None:intergenic | 30.0% |
| TCTGAGAAAGTAACCAAATA+AGG | - | tig0025591:46461-46480 | Msa1423900:CDS | 30.0% | |
| CTGAGAAAGTAACCAAATAA+GGG | - | tig0025591:46462-46481 | Msa1423900:CDS | 30.0% | |
| AATTCAAACAGACCCTTATT+TGG | + | tig0025591:46477-46496 | None:intergenic | 30.0% | |
| ! | TTGGTTCTTGTACTAGATTA+AGG | - | tig0025591:46707-46726 | Msa1423900:intron | 30.0% |
| TAGAGAGCTTAAACAACTTA+TGG | + | tig0025591:46781-46800 | None:intergenic | 30.0% | |
| ATAAGTTGTTTAAGCTCTCT+AGG | - | tig0025591:46780-46799 | Msa1423900:intron | 30.0% | |
| ! | AAAATCTTTTACTTGTGGAC+AGG | - | tig0025591:47090-47109 | Msa1423900:CDS | 30.0% |
| ! | ATGGAATCTAGATTAGTTGA+TGG | - | tig0025591:47175-47194 | Msa1423900:CDS | 30.0% |
| !! | AGAGAATTTGTTATTCACCA+GGG | + | tig0025591:47623-47642 | None:intergenic | 30.0% |
| !! | TAGAGAATTTGTTATTCACC+AGG | + | tig0025591:47624-47643 | None:intergenic | 30.0% |
| TTAGTATTATGAGGGTGATT+AGG | - | tig0025591:47784-47803 | Msa1423900:intron | 30.0% | |
| TGAAAATTATGAAGGGGATT+AGG | - | tig0025591:47820-47839 | Msa1423900:intron | 30.0% | |
| TGAAAGGATGTTTACTAAGA+GGG | + | tig0025591:47932-47951 | None:intergenic | 30.0% | |
| TTGAAAGGATGTTTACTAAG+AGG | + | tig0025591:47933-47952 | None:intergenic | 30.0% | |
| !! | TTCTTGTATGAGGTATTGAA+AGG | + | tig0025591:47948-47967 | None:intergenic | 30.0% |
| !! | TAGTTATTAGAGGCTCTAAA+GGG | + | tig0025591:48048-48067 | None:intergenic | 30.0% |
| ! | ATAGTTATTAGAGGCTCTAA+AGG | + | tig0025591:48049-48068 | None:intergenic | 30.0% |
| TTAGAGCCTCTAATAACTAT+AGG | - | tig0025591:48049-48068 | Msa1423900:intron | 30.0% | |
| AAATATCTTAGCAGCATCTT+CGG | + | tig0025591:48376-48395 | None:intergenic | 30.0% | |
| !! | TTTAACCGGTTTTCAATCTT+TGG | - | tig0025591:48708-48727 | Msa1423900:intron | 30.0% |
| ! | GTTTTCCAAAGATTGAAAAC+CGG | + | tig0025591:48716-48735 | None:intergenic | 30.0% |
| ! | ATATTAGCTTCTTCTTACCA+AGG | + | tig0025591:48896-48915 | None:intergenic | 30.0% |
| !!! | TTCTGCGTTGTTTTTGTTTT+AGG | - | tig0025591:49063-49082 | Msa1423900:intron | 30.0% |
| !!! | GTTTTTGTTTTAGGATGAGA+AGG | - | tig0025591:49072-49091 | Msa1423900:intron | 30.0% |
| TGAGAAGGATAAGAAAATTC+AGG | - | tig0025591:49087-49106 | Msa1423900:intron | 30.0% | |
| TAGAGCTTCGGATTAAAAAA+CGG | - | tig0025591:49119-49138 | Msa1423900:intron | 30.0% | |
| AAATACTCACACATAATGCA+GGG | + | tig0025591:49289-49308 | None:intergenic | 30.0% | |
| TAAATACTCACACATAATGC+AGG | + | tig0025591:49290-49309 | None:intergenic | 30.0% | |
| AGACAAAATTAACCAATGCA+AGG | - | tig0025591:49822-49841 | Msa1423900:intron | 30.0% | |
| GATGTGCTAAAATAGATTGT+AGG | + | tig0025591:50044-50063 | None:intergenic | 30.0% | |
| ! | ATTTTACGTGTTATGCAGAA+TGG | - | tig0025591:50105-50124 | Msa1423900:five_prime_UTR | 30.0% |
| GACAACGTTAAAGAGAGAAT+TGG | + | tig0025591:45378-45397 | None:intergenic | 35.0% | |
| !! | CTAAAAAACGTTGGTGTTGT+TGG | + | tig0025591:45485-45504 | None:intergenic | 35.0% |
| ! | AGAGAGTCTAAGGTTTGAAT+GGG | + | tig0025591:45540-45559 | None:intergenic | 35.0% |
| GGTAAACTTCGTTTATTTGG+TGG | - | tig0025591:45690-45709 | Msa1423900:intron | 35.0% | |
| TGTGTGATTGTTTAAACCCT+TGG | - | tig0025591:45739-45758 | Msa1423900:intron | 35.0% | |
| ! | TAGTTCGGGTTATTGTTTGA+TGG | - | tig0025591:45774-45793 | Msa1423900:intron | 35.0% |
| CTCAGTATAGTAGTAACAGA+TGG | - | tig0025591:45868-45887 | Msa1423900:intron | 35.0% | |
| AGTGCTACATAGGTTCTTAA+TGG | + | tig0025591:46053-46072 | None:intergenic | 35.0% | |
| TGTTTGTATCAGTGCTACAT+AGG | + | tig0025591:46063-46082 | None:intergenic | 35.0% | |
| !! | ATGTAGCACTGATACAAACA+CGG | - | tig0025591:46063-46082 | Msa1423900:intron | 35.0% |
| ! | AAGTGATGATTTTCTGCTAC+TGG | - | tig0025591:46360-46379 | Msa1423900:exon | 35.0% |
| CTATGCTTAATTTACTCTCG+TGG | + | tig0025591:46532-46551 | None:intergenic | 35.0% | |
| CGAGAGTAAATTAAGCATAG+TGG | - | tig0025591:46532-46551 | Msa1423900:CDS | 35.0% | |
| CCATGTTGCATAACAAAGTA+TGG | + | tig0025591:47159-47178 | None:intergenic | 35.0% | |
| ! | CCATACTTTGTTATGCAACA+TGG | - | tig0025591:47156-47175 | Msa1423900:CDS | 35.0% |
| !! | AGATTAGTTGATGGAAGTGA+CGG | - | tig0025591:47184-47203 | Msa1423900:CDS | 35.0% |
| GTAGCTTAAGCAAATTACTG+AGG | + | tig0025591:47398-47417 | None:intergenic | 35.0% | |
| GTTGTCTAGTTGTGTATATG+TGG | - | tig0025591:47550-47569 | Msa1423900:intron | 35.0% | |
| ACATAGCTACAACACATTGT+AGG | + | tig0025591:47599-47618 | None:intergenic | 35.0% | |
| CAAGACCAAACATTTCAACT+TGG | - | tig0025591:47694-47713 | Msa1423900:intron | 35.0% | |
| CGATAGTTGAATGAAGGAAA+AGG | - | tig0025591:47869-47888 | Msa1423900:intron | 35.0% | |
| TACAAGAACCACGACAAAAA+CGG | - | tig0025591:47960-47979 | Msa1423900:intron | 35.0% | |
| AGATCGGAAAAGAGTTATTC+TGG | - | tig0025591:48264-48283 | Msa1423900:intron | 35.0% | |
| GATCGGAAAAGAGTTATTCT+GGG | - | tig0025591:48265-48284 | Msa1423900:intron | 35.0% | |
| ACAAATTCCATGCCTTCATA+TGG | + | tig0025591:48351-48370 | None:intergenic | 35.0% | |
| GCATTACAAATCCTACATGT+CGG | + | tig0025591:48413-48432 | None:intergenic | 35.0% | |
| AGGTTTGGATGTAATAAGGA+GGG | - | tig0025591:48483-48502 | Msa1423900:five_prime_UTR | 35.0% | |
| CATATCAAGTATGATCAGTC+CGG | - | tig0025591:48588-48607 | Msa1423900:intron | 35.0% | |
| !! | CTTTGTTATCACCCATTTTC+CGG | + | tig0025591:48610-48629 | None:intergenic | 35.0% |
| TAAAACGTTATATTGTGCCC+AGG | - | tig0025591:48785-48804 | Msa1423900:intron | 35.0% | |
| TCACAAAGAGGAGTTAAAAC+AGG | + | tig0025591:48948-48967 | None:intergenic | 35.0% | |
| !!! | TGTTTTAACTCCTCTTTGTG+AGG | - | tig0025591:48947-48966 | Msa1423900:intron | 35.0% |
| TTCATTGTGTTGGGTTTGAA+GGG | - | tig0025591:49425-49444 | Msa1423900:intron | 35.0% | |
| GTCATATCTCTAAGCAATGT+GGG | + | tig0025591:49463-49482 | None:intergenic | 35.0% | |
| TGTCATATCTCTAAGCAATG+TGG | + | tig0025591:49464-49483 | None:intergenic | 35.0% | |
| AATTAGACTGAACCAATGCA+AGG | - | tig0025591:49653-49672 | Msa1423900:intron | 35.0% | |
| ! | TTTTAGACTGAACCAATGCA+AGG | - | tig0025591:49859-49878 | Msa1423900:intron | 35.0% |
| GTCATCACTAAAGGATAAGA+GGG | + | tig0025591:50188-50207 | None:intergenic | 35.0% | |
| AGTCATCACTAAAGGATAAG+AGG | + | tig0025591:50189-50208 | None:intergenic | 35.0% | |
| TAGCAAGTAGTCATCACTAA+AGG | + | tig0025591:50197-50216 | None:intergenic | 35.0% | |
| ACCAAGTGCGAAAAAGCAAA+AGG | - | tig0025591:45454-45473 | Msa1423900:three_prime_UTR | 40.0% | |
| !!! | TCCTTTTGCTTTTTCGCACT+TGG | + | tig0025591:45458-45477 | None:intergenic | 40.0% |
| ! | GAGAGTCTAAGGTTTGAATG+GGG | + | tig0025591:45539-45558 | None:intergenic | 40.0% |
| ! | GAGAGAGTCTAAGGTTTGAA+TGG | + | tig0025591:45541-45560 | None:intergenic | 40.0% |
| ATTGTTTAAACCCTTGGCCT+TGG | - | tig0025591:45745-45764 | Msa1423900:intron | 40.0% | |
| ! | TTGTTTAAACCCTTGGCCTT+GGG | - | tig0025591:45746-45765 | Msa1423900:intron | 40.0% |
| TCTGCTTCTGCTGGTAAATA+TGG | - | tig0025591:45949-45968 | Msa1423900:intron | 40.0% | |
| TTCTGCTGGTAAATATGGCT+TGG | - | tig0025591:45954-45973 | Msa1423900:intron | 40.0% | |
| TCTGCTGGTAAATATGGCTT+GGG | - | tig0025591:45955-45974 | Msa1423900:intron | 40.0% | |
| TGAGCTATGAAGCTTAGACA+TGG | - | tig0025591:46235-46254 | Msa1423900:intron | 40.0% | |
| TCTGCTACTGGTAGTAAAGT+AGG | - | tig0025591:46372-46391 | Msa1423900:CDS | 40.0% | |
| TTGATGTTGTGTTCGATGTG+TGG | - | tig0025591:46560-46579 | Msa1423900:intron | 40.0% | |
| !!! | TGGACAGGATTTTTTCAGCA+AGG | - | tig0025591:47105-47124 | Msa1423900:CDS | 40.0% |
| !!! | CAAGGCTACATCTTTTTTGC+TGG | - | tig0025591:47123-47142 | Msa1423900:CDS | 40.0% |
| !! | GATTAGTTGATGGAAGTGAC+GGG | - | tig0025591:47185-47204 | Msa1423900:CDS | 40.0% |
| !! | ATTAGTTGATGGAAGTGACG+GGG | - | tig0025591:47186-47205 | Msa1423900:CDS | 40.0% |
| ! | AGTTTCTGGGGATGGTAATT+TGG | - | tig0025591:47213-47232 | Msa1423900:CDS | 40.0% |
| ! | GTTTCTGGGGATGGTAATTT+GGG | - | tig0025591:47214-47233 | Msa1423900:CDS | 40.0% |
| TTAAGCGATGCTAAACACAG+TGG | - | tig0025591:47478-47497 | Msa1423900:intron | 40.0% | |
| TGCTAAACACAGTGGAAAGT+CGG | - | tig0025591:47486-47505 | Msa1423900:intron | 40.0% | |
| TTTGTCGTGGTTCTTGTATG+AGG | + | tig0025591:47958-47977 | None:intergenic | 40.0% | |
| !! | GTTTCTTACCGTTTTTGTCG+TGG | + | tig0025591:47971-47990 | None:intergenic | 40.0% |
| ! | AGTTATTCTGGGAGAGAGTT+GGG | - | tig0025591:48276-48295 | Msa1423900:intron | 40.0% |
| CATGGTCATGATCAGAGATA+CGG | + | tig0025591:48317-48336 | None:intergenic | 40.0% | |
| TGATCATGACCATGCTGTTA+AGG | - | tig0025591:48323-48342 | Msa1423900:intron | 40.0% | |
| CATATGGTTCCTTAACAGCA+TGG | + | tig0025591:48335-48354 | None:intergenic | 40.0% | |
| GCTGTTAAGGAACCATATGA+AGG | - | tig0025591:48336-48355 | Msa1423900:intron | 40.0% | |
| TAAGGAACCATATGAAGGCA+TGG | - | tig0025591:48341-48360 | Msa1423900:intron | 40.0% | |
| TAATGCGTGTGATGTCTTGT+CGG | - | tig0025591:48427-48446 | Msa1423900:CDS | 40.0% | |
| CTTATTACATCCAAACCTGC+GGG | + | tig0025591:48481-48500 | None:intergenic | 40.0% | |
| CCTTATTACATCCAAACCTG+CGG | + | tig0025591:48482-48501 | None:intergenic | 40.0% | |
| CAGGTTTGGATGTAATAAGG+AGG | - | tig0025591:48482-48501 | Msa1423900:five_prime_UTR | 40.0% | |
| GTCATTGTGTCAGCATACAA+GGG | - | tig0025591:48505-48524 | Msa1423900:five_prime_UTR | 40.0% | |
| AGTATGATCAGTCCGGAAAA+TGG | - | tig0025591:48595-48614 | Msa1423900:intron | 40.0% | |
| GTATGATCAGTCCGGAAAAT+GGG | - | tig0025591:48596-48615 | Msa1423900:intron | 40.0% | |
| TCTTTCTTCCATACATGCCT+GGG | + | tig0025591:48805-48824 | None:intergenic | 40.0% | |
| TTCTTTCTTCCATACATGCC+TGG | + | tig0025591:48806-48825 | None:intergenic | 40.0% | |
| AGGCATGTATGGAAGAAAGA+AGG | - | tig0025591:48805-48824 | Msa1423900:intron | 40.0% | |
| TAAAACGTTGTATCGTGCCT+TGG | - | tig0025591:48876-48895 | Msa1423900:intron | 40.0% | |
| CCAAATCTTTCCTCACAAAG+AGG | + | tig0025591:48960-48979 | None:intergenic | 40.0% | |
| CCTCTTTGTGAGGAAAGATT+TGG | - | tig0025591:48957-48976 | Msa1423900:intron | 40.0% | |
| AGGAACTAACAGTAGAGCTT+CGG | - | tig0025591:49107-49126 | Msa1423900:intron | 40.0% | |
| TCCAACACCTTCATTGTGTT+GGG | - | tig0025591:49416-49435 | Msa1423900:intron | 40.0% | |
| CTTCAAACCCAACACAATGA+AGG | + | tig0025591:49426-49445 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTTTGA+AGG | - | tig0025591:49424-49443 | Msa1423900:intron | 40.0% | |
| TCATTGTGTTGGGTTTGAAG+GGG | - | tig0025591:49426-49445 | Msa1423900:intron | 40.0% | |
| GAATAGATGCATCCTTGCAT+TGG | + | tig0025591:49668-49687 | None:intergenic | 40.0% | |
| GATGCATCTATTCCAATGCA+AGG | - | tig0025591:49675-49694 | Msa1423900:intron | 40.0% | |
| GCATTGGAATATCCTTGCAT+TGG | + | tig0025591:49690-49709 | None:intergenic | 40.0% | |
| TGCAAGGATATTCCAATGCA+AGG | - | tig0025591:49691-49710 | Msa1423900:intron | 40.0% | |
| GTATAGATGCATCCTTGCAT+TGG | + | tig0025591:49706-49725 | None:intergenic | 40.0% | |
| GTATAGATGCATCCTTGCAT+TGG | + | tig0025591:49706-49725 | None:intergenic | 40.0% | |
| GTATAGATGCATCCTTGCAT+TGG | + | tig0025591:49706-49725 | None:intergenic | 40.0% | |
| TTACGTGTTATGCAGAATGG+AGG | - | tig0025591:50108-50127 | Msa1423900:five_prime_UTR | 40.0% | |
| TACGTGTTATGCAGAATGGA+GGG | - | tig0025591:50109-50128 | Msa1423900:five_prime_UTR | 40.0% | |
| !! | CTAGTCTTGTGACATAGAGT+TGG | - | tig0025591:50220-50239 | Msa1423900:five_prime_UTR | 40.0% |
| !! | TCGCACTTGGTTCTACTTCT+AGG | + | tig0025591:45445-45464 | None:intergenic | 45.0% |
| TCAACGTGAGAGAGAGTCTA+AGG | + | tig0025591:45550-45569 | None:intergenic | 45.0% | |
| !! | ACTAAGTGGTGTTGGCTACA+TGG | + | tig0025591:46677-46696 | None:intergenic | 45.0% |
| ATGTAGCCAACACCACTTAG+TGG | - | tig0025591:46676-46695 | Msa1423900:intron | 45.0% | |
| TGTAGCCAACACCACTTAGT+GGG | - | tig0025591:46677-46696 | Msa1423900:intron | 45.0% | |
| CTTATCCCACTAAGTGGTGT+TGG | + | tig0025591:46685-46704 | None:intergenic | 45.0% | |
| CAACACCACTTAGTGGGATA+AGG | - | tig0025591:46683-46702 | Msa1423900:intron | 45.0% | |
| GAATTCCTGCATCCTGTTCA+TGG | - | tig0025591:47323-47342 | Msa1423900:CDS | 45.0% | |
| TGTGTTGTAGCTATGTACCC+TGG | - | tig0025591:47603-47622 | Msa1423900:intron | 45.0% | |
| TTGAGTCTTGCATGCTCTGT+TGG | + | tig0025591:47677-47696 | None:intergenic | 45.0% | |
| GGGACACTGAGAAAGATGAA+TGG | - | tig0025591:47722-47741 | Msa1423900:intron | 45.0% | |
| AATGAAGGAAAAGGCGATGC+AGG | - | tig0025591:47878-47897 | Msa1423900:intron | 45.0% | |
| ! | TGGGAAAGAGCTTCTGGTTA+AGG | - | tig0025591:47901-47920 | Msa1423900:intron | 45.0% |
| !! | GTCTCTTTGAGACAGACTAC+TGG | + | tig0025591:47993-48012 | None:intergenic | 45.0% |
| CTGTCTCAAAGAGACATCAC+CGG | - | tig0025591:47998-48017 | Msa1423900:intron | 45.0% | |
| ! | TCTAAAGGGTTTTTCTCCCC+AGG | + | tig0025591:48034-48053 | None:intergenic | 45.0% |
| TGACAGTGGAACCGAATGAT+GGG | - | tig0025591:48238-48257 | Msa1423900:intron | 45.0% | |
| !! | ACCGAATGATGGGTGTAGAT+CGG | - | tig0025591:48248-48267 | Msa1423900:intron | 45.0% |
| TCCGATCTACACCCATCATT+CGG | + | tig0025591:48252-48271 | None:intergenic | 45.0% | |
| ! | GAGTTATTCTGGGAGAGAGT+TGG | - | tig0025591:48275-48294 | Msa1423900:intron | 45.0% |
| GATGAATATGGCCGACATGT+AGG | - | tig0025591:48399-48418 | Msa1423900:intron | 45.0% | |
| CCGCAGGTTTGGATGTAATA+AGG | - | tig0025591:48479-48498 | Msa1423900:exon | 45.0% | |
| GGTCATTGTGTCAGCATACA+AGG | - | tig0025591:48504-48523 | Msa1423900:five_prime_UTR | 45.0% | |
| GTCAGCATACAAGGGAAACT+TGG | - | tig0025591:48513-48532 | Msa1423900:five_prime_UTR | 45.0% | |
| TTGGTCCAGTTCGTAAACCA+AGG | - | tig0025591:48532-48551 | Msa1423900:intron | 45.0% | |
| TGGTCCAGTTCGTAAACCAA+GGG | - | tig0025591:48533-48552 | Msa1423900:intron | 45.0% | |
| ATATTGTGCCCAGGCATGTA+TGG | - | tig0025591:48794-48813 | Msa1423900:intron | 45.0% | |
| CTGGTGCAAAAGCTCTTCTA+TGG | + | tig0025591:49260-49279 | None:intergenic | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | tig0025591:49417-49436 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | - | tig0025591:49415-49434 | Msa1423900:intron | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | + | tig0025591:49420-49439 | None:intergenic | 45.0% |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | + | tig0025591:49514-49533 | None:intergenic | 45.0% |
| !! | CAATGCAAAACCGGCTTGTA+AGG | + | tig0025591:49520-49539 | None:intergenic | 45.0% |
| !! | CTTACAAGCCGGTTTTGCAT+TGG | - | tig0025591:49518-49537 | Msa1423900:intron | 45.0% |
| !!! | TTTTATTTTATATATTTTGA+TGG | - | tig0025591:45669-45688 | Msa1423900:intron | 5.0% |
| ACTATGCAACCCAAGGCCAA+GGG | + | tig0025591:45758-45777 | None:intergenic | 50.0% | |
| AACTATGCAACCCAAGGCCA+AGG | + | tig0025591:45759-45778 | None:intergenic | 50.0% | |
| ! | TGGCCTTGGGTTGCATAGTT+CGG | - | tig0025591:45759-45778 | Msa1423900:intron | 50.0% |
| AACCCGAACTATGCAACCCA+AGG | + | tig0025591:45765-45784 | None:intergenic | 50.0% | |
| ! | TCACGGTTTTCTGCTTCTGC+TGG | - | tig0025591:45940-45959 | Msa1423900:intron | 50.0% |
| CACGGACACTGTAAACGACA+TGG | - | tig0025591:46081-46100 | Msa1423900:intron | 50.0% | |
| GCACAGACACTCCTCGAATT+AGG | + | tig0025591:46197-46216 | None:intergenic | 50.0% | |
| GATGTGTGTGTGTGTGTCAG+TGG | + | tig0025591:46273-46292 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | tig0025591:46691-46710 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | tig0025591:46688-46707 | Msa1423900:intron | 50.0% | |
| CTAAGCCATGAACAGGATGC+AGG | + | tig0025591:47331-47350 | None:intergenic | 50.0% | |
| CTGCATCCTGTTCATGGCTT+AGG | - | tig0025591:47329-47348 | Msa1423900:CDS | 50.0% | |
| TCCTGTTCATGGCTTAGGTC+TGG | - | tig0025591:47334-47353 | Msa1423900:CDS | 50.0% | |
| ACCAGACCTAAGCCATGAAC+AGG | + | tig0025591:47338-47357 | None:intergenic | 50.0% | |
| AAGGAAAAGGCGATGCAGGT+GGG | - | tig0025591:47882-47901 | Msa1423900:intron | 50.0% | |
| CAAAGAGACATCACCGGTAC+AGG | - | tig0025591:48004-48023 | Msa1423900:intron | 50.0% | |
| ATCACCGGTACAGGTTATCC+TGG | - | tig0025591:48013-48032 | Msa1423900:intron | 50.0% | |
| TCACCGGTACAGGTTATCCT+GGG | - | tig0025591:48014-48033 | Msa1423900:intron | 50.0% | |
| GTGACAGTGGAACCGAATGA+TGG | - | tig0025591:48237-48256 | Msa1423900:intron | 50.0% | |
| TAAACCAAGGGCCAGCACTA+GGG | - | tig0025591:48545-48564 | Msa1423900:intron | 50.0% | |
| CTTACAACCTTCCCTAGTGC+TGG | + | tig0025591:48559-48578 | None:intergenic | 50.0% | |
| CAGCACTAGGGAAGGTTGTA+AGG | - | tig0025591:48557-48576 | Msa1423900:intron | 50.0% | |
| ATTGTTTGGCGTGCTTCACG+TGG | + | tig0025591:48669-48688 | None:intergenic | 50.0% | |
| ACGTGAAGCACGCCAAACAA+TGG | - | tig0025591:48668-48687 | Msa1423900:intron | 50.0% | |
| ACATAATGCAGGGCTACGTC+TGG | + | tig0025591:49279-49298 | None:intergenic | 50.0% | |
| CTAGGGGAGAACTGCAATGA+AGG | + | tig0025591:49357-49376 | None:intergenic | 50.0% | |
| ATGCCGCAATTAGGCGACTA+GGG | + | tig0025591:49374-49393 | None:intergenic | 50.0% | |
| AATGCCGCAATTAGGCGACT+AGG | + | tig0025591:49375-49394 | None:intergenic | 50.0% | |
| AGTCGCCTAATTGCGGCATT+TGG | - | tig0025591:49375-49394 | Msa1423900:intron | 50.0% | |
| GTCGCCTAATTGCGGCATTT+GGG | - | tig0025591:49376-49395 | Msa1423900:intron | 50.0% | |
| GCAACCCAAATGCCGCAATT+AGG | + | tig0025591:49383-49402 | None:intergenic | 50.0% | |
| TGTGTTGGGTTTGAAGGGGT+CGG | - | tig0025591:49430-49449 | Msa1423900:intron | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | tig0025591:49515-49534 | None:intergenic | 50.0% |
| ! | GGCCTTGGGTTGCATAGTTC+GGG | - | tig0025591:45760-45779 | Msa1423900:intron | 55.0% |
| ACACTAGTGTGTCCGACTCC+AGG | - | tig0025591:46166-46185 | Msa1423900:intron | 55.0% | |
| CACTAGTGTGTCCGACTCCA+GGG | - | tig0025591:46167-46186 | Msa1423900:intron | 55.0% | |
| AATTAGGCGTGCCCTGGAGT+CGG | + | tig0025591:46181-46200 | None:intergenic | 55.0% | |
| GTGTGTGTCAGTGGTGTGTC+TGG | + | tig0025591:46264-46283 | None:intergenic | 55.0% | |
| !! | AGTTGATGGAAGTGACGGGG+CGG | - | tig0025591:47189-47208 | Msa1423900:CDS | 55.0% |
| GAAGGAAAAGGCGATGCAGG+TGG | - | tig0025591:47881-47900 | Msa1423900:intron | 55.0% | |
| TGCAGGTGGGAAAGAGCTTC+TGG | - | tig0025591:47895-47914 | Msa1423900:intron | 55.0% | |
| CACCGGTACAGGTTATCCTG+GGG | - | tig0025591:48015-48034 | Msa1423900:intron | 55.0% | |
| CTCCCCAGGATAACCTGTAC+CGG | + | tig0025591:48020-48039 | None:intergenic | 55.0% | |
| TGTGATGTCTTGTCGGCGCT+CGG | - | tig0025591:48434-48453 | Msa1423900:CDS | 55.0% | |
| CTGGCCCTTGGTTTACGAAC+TGG | + | tig0025591:48540-48559 | None:intergenic | 55.0% | |
| GTAAACCAAGGGCCAGCACT+AGG | - | tig0025591:48544-48563 | Msa1423900:intron | 55.0% | |
| GGGGAGAACTGCAATGAAGG+CGG | + | tig0025591:49354-49373 | None:intergenic | 55.0% | |
| CTCCCCTAGTCGCCTAATTG+CGG | - | tig0025591:49368-49387 | Msa1423900:intron | 55.0% | |
| TGCCGCAATTAGGCGACTAG+GGG | + | tig0025591:49373-49392 | None:intergenic | 55.0% | |
| GTTATGCAGAATGGAGGGCG+TGG | - | tig0025591:50114-50133 | Msa1423900:five_prime_UTR | 55.0% | |
| TCCAGGGCACGCCTAATTCG+AGG | - | tig0025591:46183-46202 | Msa1423900:intron | 60.0% | |
| TCCTCGAATTAGGCGTGCCC+TGG | + | tig0025591:46187-46206 | None:intergenic | 60.0% | |
| ! | AGTGACGGGGCGGAAGTTTC+TGG | - | tig0025591:47199-47218 | Msa1423900:CDS | 60.0% |
| ! | GTGACGGGGCGGAAGTTTCT+GGG | - | tig0025591:47200-47219 | Msa1423900:CDS | 60.0% |
| TGACGGGGCGGAAGTTTCTG+GGG | - | tig0025591:47201-47220 | Msa1423900:CDS | 60.0% | |
| TGTCGGCGCTCGGAAAGAGA+TGG | - | tig0025591:48444-48463 | Msa1423900:CDS | 60.0% | |
| GGCGCTCGGAAAGAGATGGT+AGG | - | tig0025591:48448-48467 | Msa1423900:CDS | 60.0% | |
| ATGGTAGGATTCTCGCCCGC+AGG | - | tig0025591:48463-48482 | Msa1423900:exon | 60.0% | |
| AGGATTCTCGCCCGCAGGTT+TGG | - | tig0025591:48468-48487 | Msa1423900:exon | 60.0% | |
| GCAGCCCTCACCTTACAAGC+CGG | - | tig0025591:49507-49526 | Msa1423900:intron | 60.0% | |
| ! | GGGGCGGAAGTTTCTGGGGA+TGG | - | tig0025591:47205-47224 | Msa1423900:CDS | 65.0% |
| !! | CCTTCCCTAGTGCTGGCCCT+TGG | + | tig0025591:48552-48571 | None:intergenic | 65.0% |
| CCAAGGGCCAGCACTAGGGA+AGG | - | tig0025591:48549-48568 | Msa1423900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025591 | gene | 45350 | 50304 | 45350 | ID=Msa1423900;Name=Msa1423900 |
| tig0025591 | mRNA | 45350 | 50304 | 45350 | ID=Msa1423900-mRNA-1;Parent=Msa1423900;Name=Msa1423900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=301|1|1|1|0.5|0.2|5|195|235 |
| tig0025591 | exon | 45350 | 45531 | 45350 | ID=Msa1423900-mRNA-1:exon:3514;Parent=Msa1423900-mRNA-1 |
| tig0025591 | exon | 46356 | 46569 | 46356 | ID=Msa1423900-mRNA-1:exon:3513;Parent=Msa1423900-mRNA-1 |
| tig0025591 | exon | 46965 | 47410 | 46965 | ID=Msa1423900-mRNA-1:exon:3512;Parent=Msa1423900-mRNA-1 |
| tig0025591 | exon | 48419 | 48542 | 48419 | ID=Msa1423900-mRNA-1:exon:3511;Parent=Msa1423900-mRNA-1 |
| tig0025591 | exon | 50067 | 50304 | 50067 | ID=Msa1423900-mRNA-1:exon:3510;Parent=Msa1423900-mRNA-1 |
| tig0025591 | five_prime_UTR | 50067 | 50304 | 50067 | ID=Msa1423900-mRNA-1:five_prime_utr;Parent=Msa1423900-mRNA-1 |
| tig0025591 | five_prime_UTR | 48480 | 48542 | 48480 | ID=Msa1423900-mRNA-1:five_prime_utr;Parent=Msa1423900-mRNA-1 |
| tig0025591 | CDS | 48419 | 48479 | 48419 | ID=Msa1423900-mRNA-1:cds;Parent=Msa1423900-mRNA-1 |
| tig0025591 | CDS | 46965 | 47410 | 46965 | ID=Msa1423900-mRNA-1:cds;Parent=Msa1423900-mRNA-1 |
| tig0025591 | CDS | 46369 | 46569 | 46369 | ID=Msa1423900-mRNA-1:cds;Parent=Msa1423900-mRNA-1 |
| tig0025591 | three_prime_UTR | 46356 | 46368 | 46356 | ID=Msa1423900-mRNA-1:three_prime_utr;Parent=Msa1423900-mRNA-1 |
| tig0025591 | three_prime_UTR | 45350 | 45531 | 45350 | ID=Msa1423900-mRNA-1:three_prime_utr;Parent=Msa1423900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
