Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489850 | XP_003598326.1 | 98.347 | 484 | 8 | 0 | 2 | 485 | 1 | 484 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489850 | sp|Q9C9H5|GUN9_ARATH | 74.167 | 480 | 123 | 1 | 4 | 483 | 2 | 480 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489850 | G7IVD9 | 98.347 | 484 | 8 | 0 | 2 | 485 | 1 | 484 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0347780 | Msa0489850 | 0.809748 | 1.623255e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489850 | MtrunA17_Chr3g0080171 | 98.347 | 484 | 8 | 0 | 2 | 485 | 1 | 484 | 0.0 | 999 |
| Msa0489850 | MtrunA17_Chr3g0119821 | 58.658 | 462 | 186 | 2 | 26 | 483 | 35 | 495 | 0.0 | 554 |
| Msa0489850 | MtrunA17_Chr1g0195271 | 59.653 | 461 | 180 | 3 | 26 | 482 | 39 | 497 | 0.0 | 550 |
| Msa0489850 | MtrunA17_Chr3g0145261 | 57.296 | 466 | 190 | 5 | 26 | 484 | 24 | 487 | 0.0 | 533 |
| Msa0489850 | MtrunA17_Chr8g0391391 | 55.699 | 465 | 199 | 4 | 26 | 484 | 30 | 493 | 0.0 | 520 |
| Msa0489850 | MtrunA17_Chr4g0018301 | 53.509 | 456 | 209 | 3 | 26 | 481 | 45 | 497 | 3.73e-172 | 494 |
| Msa0489850 | MtrunA17_Chr4g0018361 | 52.772 | 487 | 212 | 8 | 9 | 481 | 7 | 489 | 2.31e-171 | 491 |
| Msa0489850 | MtrunA17_Chr5g0397201 | 49.578 | 474 | 228 | 6 | 16 | 485 | 30 | 496 | 2.19e-157 | 456 |
| Msa0489850 | MtrunA17_Chr8g0388051 | 47.669 | 472 | 231 | 8 | 26 | 485 | 28 | 495 | 1.73e-143 | 425 |
| Msa0489850 | MtrunA17_Chr3g0119371 | 45.585 | 487 | 248 | 8 | 7 | 481 | 24 | 505 | 2.75e-142 | 418 |
| Msa0489850 | MtrunA17_Chr5g0439311 | 43.863 | 497 | 254 | 10 | 1 | 481 | 9 | 496 | 5.82e-141 | 415 |
| Msa0489850 | MtrunA17_Chr1g0164201 | 46.516 | 488 | 249 | 8 | 1 | 482 | 1 | 482 | 7.46e-140 | 410 |
| Msa0489850 | MtrunA17_Chr3g0086311 | 44.057 | 488 | 259 | 6 | 1 | 482 | 1 | 480 | 3.43e-132 | 391 |
| Msa0489850 | MtrunA17_Chr4g0038131 | 46.581 | 468 | 231 | 10 | 26 | 479 | 28 | 490 | 2.53e-127 | 384 |
| Msa0489850 | MtrunA17_Chr5g0397181 | 46.633 | 401 | 203 | 6 | 87 | 483 | 1 | 394 | 9.49e-122 | 362 |
| Msa0489850 | MtrunA17_Chr3g0142501 | 41.453 | 468 | 250 | 10 | 27 | 479 | 58 | 516 | 4.22e-111 | 338 |
| Msa0489850 | MtrunA17_Chr8g0372031 | 42.979 | 470 | 244 | 12 | 25 | 479 | 62 | 522 | 1.41e-108 | 332 |
| Msa0489850 | MtrunA17_Chr3g0136381 | 44.167 | 360 | 192 | 4 | 21 | 378 | 25 | 377 | 4.19e-105 | 320 |
| Msa0489850 | MtrunA17_Chr4g0018341 | 50.903 | 277 | 134 | 2 | 205 | 481 | 2 | 276 | 5.35e-94 | 286 |
| Msa0489850 | MtrunA17_Chr2g0291461 | 41.935 | 496 | 237 | 18 | 26 | 484 | 111 | 592 | 3.88e-93 | 295 |
| Msa0489850 | MtrunA17_Chr4g0022271 | 93.571 | 140 | 4 | 1 | 325 | 464 | 20 | 154 | 4.94e-89 | 269 |
| Msa0489850 | MtrunA17_Chr3g0120661 | 40.123 | 486 | 245 | 19 | 26 | 478 | 116 | 588 | 1.23e-88 | 283 |
| Msa0489850 | MtrunA17_Chr5g0444721 | 42.857 | 371 | 197 | 6 | 123 | 479 | 193 | 562 | 2.30e-88 | 281 |
| Msa0489850 | MtrunA17_Chr5g0444721 | 42.286 | 175 | 93 | 4 | 5 | 172 | 12 | 185 | 3.27e-32 | 129 |
| Msa0489850 | MtrunA17_Chr3g0126111 | 34.766 | 512 | 282 | 17 | 7 | 478 | 81 | 580 | 1.07e-81 | 265 |
| Msa0489850 | MtrunA17_Chr4g0018351 | 59.459 | 185 | 74 | 1 | 26 | 210 | 30 | 213 | 5.79e-68 | 216 |
| Msa0489850 | MtrunA17_Chr7g0269571 | 56.213 | 169 | 62 | 2 | 325 | 482 | 43 | 210 | 2.47e-62 | 202 |
| Msa0489850 | MtrunA17_Chr1g0164181 | 44.910 | 167 | 91 | 1 | 313 | 479 | 164 | 329 | 4.10e-40 | 147 |
| Msa0489850 | MtrunA17_Chr1g0164181 | 46.632 | 193 | 97 | 4 | 68 | 258 | 3 | 191 | 1.69e-35 | 134 |
| Msa0489850 | MtrunA17_Chr4g0072811 | 37.805 | 164 | 96 | 4 | 317 | 478 | 3 | 162 | 1.44e-25 | 103 |
| Msa0489850 | MtrunA17_Chr3g0136371 | 47.872 | 94 | 48 | 1 | 378 | 471 | 1 | 93 | 5.15e-21 | 88.2 |
| Msa0489850 | MtrunA17_Chr7g0269561 | 39.130 | 92 | 38 | 2 | 235 | 322 | 25 | 102 | 7.27e-13 | 65.5 |
| Msa0489850 | MtrunA17_Chr5g0397171 | 59.524 | 42 | 17 | 0 | 26 | 67 | 41 | 82 | 8.27e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489850 | AT1G71380.1 | 74.167 | 480 | 123 | 1 | 4 | 483 | 2 | 480 | 0.0 | 738 |
| Msa0489850 | AT1G22880.1 | 73.085 | 483 | 128 | 2 | 2 | 484 | 1 | 481 | 0.0 | 714 |
| Msa0489850 | AT1G22880.2 | 73.618 | 398 | 104 | 1 | 87 | 484 | 1 | 397 | 0.0 | 607 |
| Msa0489850 | AT4G02290.1 | 61.422 | 464 | 173 | 3 | 23 | 482 | 49 | 510 | 0.0 | 578 |
| Msa0489850 | AT1G02800.1 | 62.039 | 461 | 167 | 4 | 26 | 482 | 43 | 499 | 0.0 | 572 |
| Msa0489850 | AT1G70710.1 | 56.008 | 491 | 208 | 5 | 1 | 485 | 1 | 489 | 0.0 | 552 |
| Msa0489850 | AT1G23210.1 | 55.208 | 480 | 209 | 3 | 9 | 484 | 11 | 488 | 0.0 | 537 |
| Msa0489850 | AT4G39010.1 | 54.077 | 466 | 206 | 4 | 26 | 484 | 29 | 493 | 4.69e-180 | 514 |
| Msa0489850 | AT4G02290.2 | 61.000 | 400 | 150 | 3 | 87 | 482 | 1 | 398 | 1.99e-170 | 486 |
| Msa0489850 | AT1G22880.3 | 75.000 | 324 | 80 | 1 | 2 | 325 | 1 | 323 | 3.40e-169 | 480 |
| Msa0489850 | AT4G39000.1 | 47.347 | 490 | 250 | 4 | 2 | 484 | 1 | 489 | 2.52e-157 | 456 |
| Msa0489850 | AT4G23560.1 | 50.628 | 478 | 223 | 8 | 6 | 479 | 4 | 472 | 2.62e-155 | 450 |
| Msa0489850 | AT4G09740.1 | 49.896 | 479 | 225 | 9 | 6 | 479 | 4 | 472 | 4.53e-151 | 439 |
| Msa0489850 | AT4G38990.2 | 45.885 | 486 | 250 | 5 | 11 | 484 | 8 | 492 | 5.71e-148 | 432 |
| Msa0489850 | AT2G32990.1 | 45.621 | 491 | 248 | 8 | 6 | 479 | 14 | 502 | 3.27e-143 | 421 |
| Msa0489850 | AT4G11050.2 | 47.109 | 467 | 229 | 8 | 26 | 479 | 26 | 487 | 1.45e-140 | 415 |
| Msa0489850 | AT4G11050.3 | 47.109 | 467 | 229 | 8 | 26 | 479 | 26 | 487 | 6.32e-140 | 416 |
| Msa0489850 | AT4G11050.1 | 47.109 | 467 | 229 | 8 | 26 | 479 | 26 | 487 | 7.66e-140 | 416 |
| Msa0489850 | AT3G43860.2 | 45.773 | 485 | 251 | 6 | 1 | 483 | 11 | 485 | 1.19e-139 | 410 |
| Msa0489850 | AT3G43860.1 | 45.773 | 485 | 251 | 6 | 1 | 483 | 11 | 485 | 1.19e-139 | 410 |
| Msa0489850 | AT1G64390.1 | 47.639 | 466 | 228 | 8 | 26 | 479 | 25 | 486 | 2.19e-139 | 415 |
| Msa0489850 | AT4G39010.2 | 52.089 | 359 | 165 | 3 | 26 | 377 | 29 | 387 | 2.47e-134 | 394 |
| Msa0489850 | AT2G44540.1 | 44.444 | 477 | 255 | 7 | 9 | 479 | 16 | 488 | 3.49e-133 | 394 |
| Msa0489850 | AT2G44570.1 | 45.455 | 484 | 249 | 9 | 6 | 482 | 17 | 492 | 8.40e-133 | 393 |
| Msa0489850 | AT2G44550.1 | 44.351 | 478 | 255 | 7 | 7 | 479 | 16 | 487 | 2.15e-131 | 390 |
| Msa0489850 | AT2G44560.1 | 44.764 | 487 | 256 | 8 | 2 | 482 | 12 | 491 | 2.15e-127 | 379 |
| Msa0489850 | AT1G48930.1 | 45.923 | 466 | 236 | 7 | 26 | 479 | 30 | 491 | 3.80e-119 | 363 |
| Msa0489850 | AT1G75680.1 | 45.514 | 457 | 229 | 10 | 27 | 472 | 58 | 505 | 7.92e-118 | 356 |
| Msa0489850 | AT1G19940.2 | 42.857 | 462 | 244 | 10 | 26 | 476 | 48 | 500 | 1.22e-116 | 353 |
| Msa0489850 | AT1G19940.1 | 42.857 | 462 | 244 | 10 | 26 | 476 | 48 | 500 | 1.22e-116 | 353 |
| Msa0489850 | AT2G44570.2 | 42.785 | 395 | 211 | 9 | 6 | 393 | 17 | 403 | 3.70e-90 | 281 |
| Msa0489850 | AT4G38990.1 | 42.735 | 351 | 173 | 3 | 11 | 356 | 8 | 335 | 5.52e-90 | 278 |
| Msa0489850 | AT5G49720.1 | 40.156 | 513 | 258 | 17 | 8 | 483 | 88 | 588 | 2.72e-89 | 285 |
| Msa0489850 | AT4G24260.1 | 38.298 | 517 | 272 | 17 | 2 | 483 | 84 | 588 | 1.16e-85 | 276 |
| Msa0489850 | AT1G19940.3 | 42.033 | 364 | 196 | 8 | 26 | 378 | 48 | 407 | 1.51e-83 | 264 |
| Msa0489850 | AT1G65610.1 | 37.354 | 514 | 270 | 22 | 5 | 479 | 88 | 588 | 1.71e-82 | 268 |
| Msa0489850 | AT4G24260.3 | 38.402 | 388 | 197 | 15 | 26 | 378 | 108 | 488 | 1.69e-51 | 182 |
| Msa0489850 | AT4G24260.2 | 40.252 | 318 | 153 | 12 | 26 | 311 | 108 | 420 | 1.95e-49 | 176 |
Find 128 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACAGTTCTTAAAGTATT+TGG | 0.131253 | 3_4:+10528000 | None:intergenic |
| ATGGCTCCAACCAATATATT+AGG | 0.202587 | 3_4:+10527708 | None:intergenic |
| TGCTGTTAAATACTACAATT+TGG | 0.250375 | 3_4:-10528609 | Msa0489850:CDS |
| CTACAATTTGGCCAAGTCTT+TGG | 0.251872 | 3_4:-10528597 | Msa0489850:CDS |
| CCAAGAAGTCATAAAGTAAA+AGG | 0.277546 | 3_4:-10531532 | None:intergenic |
| CTCCATTTGATTTGTTGGTC+TGG | 0.283409 | 3_4:+10531345 | None:intergenic |
| CCAGAATATGAGCAATAAAA+TGG | 0.291892 | 3_4:+10529017 | None:intergenic |
| TACAATTTGGCCAAGTCTTT+GGG | 0.295167 | 3_4:-10528596 | Msa0489850:CDS |
| TTTCAGGTAGACTATATATT+AGG | 0.296374 | 3_4:-10527891 | Msa0489850:intron |
| CTGGTTTGGACCTCCAACTA+TGG | 0.301617 | 3_4:+10527689 | None:intergenic |
| TGGATCTCCATTTGATTTGT+TGG | 0.303575 | 3_4:+10531340 | None:intergenic |
| GCCAAAGCTTCTCTATAGTT+TGG | 0.312895 | 3_4:+10531414 | None:intergenic |
| GTTACTTCTTACATGCTTGC+TGG | 0.313758 | 3_4:-10531460 | Msa0489850:CDS |
| CAACATTTGTGATCAACATT+TGG | 0.314931 | 3_4:+10529272 | None:intergenic |
| TCATGGAGCACAATTGAATA+TGG | 0.318627 | 3_4:-10529410 | Msa0489850:CDS |
| TGAATTCTCTTGGGAAAATA+TGG | 0.319055 | 3_4:+10527828 | None:intergenic |
| TTATCCCAGCTGAAGATATC+AGG | 0.329473 | 3_4:+10528560 | None:intergenic |
| GCTCTTGCTTCTTTCATTTG+TGG | 0.342700 | 3_4:+10529374 | None:intergenic |
| ATCATGCTCACTGGTTGTCT+TGG | 0.347024 | 3_4:+10531504 | None:intergenic |
| GAATCAGAACCCTAATATAT+TGG | 0.355685 | 3_4:-10527718 | Msa0489850:CDS |
| CTCTATAGTTTGGTTTGCAT+TGG | 0.357894 | 3_4:+10531424 | None:intergenic |
| AATCTAACATTAATTGTTAC+CGG | 0.359003 | 3_4:+10527572 | None:intergenic |
| ATCAAATGGAGATCCAATTC+TGG | 0.361824 | 3_4:-10531333 | Msa0489850:CDS |
| TCCACTTAGAATGTCCTATA+TGG | 0.366931 | 3_4:-10527862 | Msa0489850:CDS |
| TACAACCTATTCCAAGTATA+TGG | 0.367719 | 3_4:-10528067 | Msa0489850:CDS |
| TAGGGTTCTGATTCATTGAA+TGG | 0.377070 | 3_4:+10527727 | None:intergenic |
| CATCAGGAAATCCGTCGTTC+TGG | 0.380884 | 3_4:+10527670 | None:intergenic |
| TCCTCTGTGGTGAATTCTCT+TGG | 0.381552 | 3_4:+10527818 | None:intergenic |
| CTTTGTAGCTGCCATATACT+TGG | 0.384398 | 3_4:+10528056 | None:intergenic |
| GGAAATCCGTCGTTCTGGTT+TGG | 0.384940 | 3_4:+10527675 | None:intergenic |
| TACATCAATGGTGGGATTGT+TGG | 0.387929 | 3_4:-10527612 | Msa0489850:CDS |
| TTCTTCACAGTAATTCATAA+AGG | 0.389740 | 3_4:-10527235 | Msa0489850:three_prime_UTR |
| ACCATCGGACATGCCAGAAT+TGG | 0.391790 | 3_4:+10531320 | None:intergenic |
| TTCAGCCGCAACATCAGAAC+CGG | 0.406568 | 3_4:+10529190 | None:intergenic |
| CTATAATCACCGCGATCATC+AGG | 0.411154 | 3_4:+10527654 | None:intergenic |
| ACACCGACATAGAGTCTTCC+AGG | 0.415923 | 3_4:+10529302 | None:intergenic |
| CCACCATTGATGTAAGTTGC+TGG | 0.419287 | 3_4:+10527621 | None:intergenic |
| TTGCTCATATTCTGGATTCA+AGG | 0.420522 | 3_4:-10529009 | Msa0489850:intron |
| TGGCTCCAACCAATATATTA+GGG | 0.420525 | 3_4:+10527709 | None:intergenic |
| GGACCTTTAGCGTACTTTGC+CGG | 0.422505 | 3_4:-10527591 | Msa0489850:CDS |
| ACATACTGAAGATTGCTTGC+AGG | 0.422983 | 3_4:+10528111 | None:intergenic |
| CTAACAGTGTCCATATCTTC+TGG | 0.423308 | 3_4:+10529242 | None:intergenic |
| ACCAAACTATAGAGAAGCTT+TGG | 0.423724 | 3_4:-10531415 | Msa0489850:CDS |
| TCATGCTCACTGGTTGTCTT+GGG | 0.423939 | 3_4:+10531505 | None:intergenic |
| CAGTTTGCTTTGCAGTATCA+AGG | 0.425288 | 3_4:-10529074 | Msa0489850:CDS |
| TTGGGAAAGACCAGAAGATA+TGG | 0.432588 | 3_4:-10529252 | Msa0489850:CDS |
| CAAATGTTGATCACAAATGT+TGG | 0.436805 | 3_4:-10529271 | Msa0489850:CDS |
| TGTAGTTGAAGAGGGTGAAT+TGG | 0.441166 | 3_4:+10528327 | None:intergenic |
| ATGTCCTATATGGTAGGTTA+TGG | 0.445656 | 3_4:-10527852 | Msa0489850:CDS |
| TCAGTTCATCCACAGACAAT+AGG | 0.448365 | 3_4:-10527777 | Msa0489850:CDS |
| TTTAGTAGACATCCCTTTGT+TGG | 0.450453 | 3_4:+10527483 | None:intergenic |
| AGCTGCCATATACTTGGAAT+AGG | 0.451707 | 3_4:+10528062 | None:intergenic |
| CTCCAGACCAACAAATCAAA+TGG | 0.452998 | 3_4:-10531347 | Msa0489850:CDS |
| ATATTGGTTGGAGCCATAGT+TGG | 0.454285 | 3_4:-10527702 | Msa0489850:CDS |
| AATTGAATATGGAAAGAGAA+TGG | 0.462216 | 3_4:-10529399 | Msa0489850:CDS |
| ATCAACCTGATATCTTCAGC+TGG | 0.462559 | 3_4:-10528565 | Msa0489850:CDS |
| TTAGTAGACATCCCTTTGTT+GGG | 0.463836 | 3_4:+10527484 | None:intergenic |
| AACAAAAGCTTAGAATAAGT+TGG | 0.464270 | 3_4:+10529119 | None:intergenic |
| ATTTGATTTGTTGGTCTGGA+GGG | 0.464278 | 3_4:+10531349 | None:intergenic |
| AAATGTTGATCACAAATGTT+GGG | 0.467634 | 3_4:-10529270 | Msa0489850:CDS |
| TCTTCAGGATGAACTATTGT+GGG | 0.468517 | 3_4:-10528660 | Msa0489850:intron |
| GTGCACATGTCCTTCTCTCA+AGG | 0.474161 | 3_4:-10528526 | Msa0489850:CDS |
| TGGACCATAACCTACCATAT+AGG | 0.476059 | 3_4:+10527848 | None:intergenic |
| ATTTAACTGCGGTGGCGTCT+TGG | 0.480590 | 3_4:-10528028 | Msa0489850:CDS |
| ATTGAATATGGAAAGAGAAT+GGG | 0.486477 | 3_4:-10529398 | Msa0489850:CDS |
| GTAAAACATAGTAAAGATGT+TGG | 0.488652 | 3_4:+10527365 | None:intergenic |
| AATAAAGACGAATGCAAAGA+TGG | 0.498098 | 3_4:+10527276 | None:intergenic |
| CATTTGATTTGTTGGTCTGG+AGG | 0.498106 | 3_4:+10531348 | None:intergenic |
| ACAGGAGGCTATTATGATGC+AGG | 0.500795 | 3_4:-10529482 | Msa0489850:CDS |
| TCACAACAACAATGCTATCA+TGG | 0.511193 | 3_4:-10529427 | Msa0489850:CDS |
| CAGAACCCTAATATATTGGT+TGG | 0.511456 | 3_4:-10527714 | Msa0489850:CDS |
| CCTCTGTGGTGAATTCTCTT+GGG | 0.514992 | 3_4:+10527819 | None:intergenic |
| ATCTTCAGGATGAACTATTG+TGG | 0.519125 | 3_4:-10528661 | Msa0489850:intron |
| ATCATCAGCTCCCAAAGACT+TGG | 0.531480 | 3_4:+10528586 | None:intergenic |
| AAGAACTGTTGCGAAAAGAC+AGG | 0.532303 | 3_4:-10527989 | Msa0489850:intron |
| GTAGTTGAAGAGGGTGAATT+GGG | 0.534837 | 3_4:+10528328 | None:intergenic |
| GAAGTTCTCATCATGCTCAC+TGG | 0.536003 | 3_4:+10531495 | None:intergenic |
| AACTGCTGCTGCACTTGCCG+CGG | 0.536413 | 3_4:-10529168 | Msa0489850:CDS |
| ATTGTTGTTGTGAATGCCAT+TGG | 0.540371 | 3_4:+10529437 | None:intergenic |
| ATAAGAACTTTGATCAGTAT+AGG | 0.541520 | 3_4:-10528384 | Msa0489850:CDS |
| TATGTATCTTCAAACAATCC+CGG | 0.544424 | 3_4:-10529209 | Msa0489850:CDS |
| CAATCCCGGTTCTGATGTTG+CGG | 0.544726 | 3_4:-10529195 | Msa0489850:CDS |
| TTGGTTGGAGCCATAGTTGG+AGG | 0.545842 | 3_4:-10527699 | Msa0489850:CDS |
| CTACAGAGAGCATTGCTGAA+TGG | 0.545991 | 3_4:-10528409 | Msa0489850:intron |
| TCTCATCTCTACCCAACAAA+GGG | 0.546034 | 3_4:-10527495 | Msa0489850:three_prime_UTR |
| CCACAGACAATAGGATGTGA+TGG | 0.547733 | 3_4:-10527768 | Msa0489850:CDS |
| GAACCAGCAACTTACATCAA+TGG | 0.548177 | 3_4:-10527624 | Msa0489850:CDS |
| AGCTGGGATAACAAATATGC+TGG | 0.549315 | 3_4:-10528548 | Msa0489850:CDS |
| TAGATGGTGGTAGACTATGA+AGG | 0.553806 | 3_4:-10527453 | Msa0489850:three_prime_UTR |
| TACATTGGCAAGGCGACCAT+CGG | 0.554465 | 3_4:+10531305 | None:intergenic |
| TCCAATTCTGGCATGTCCGA+TGG | 0.555287 | 3_4:-10531321 | Msa0489850:CDS |
| TAGATTTGACTCTGATAGCA+AGG | 0.555768 | 3_4:-10527555 | Msa0489850:three_prime_UTR |
| GGAAGACTCTATGTCGGTGT+TGG | 0.560843 | 3_4:-10529299 | Msa0489850:CDS |
| TTCAACTTACCCTTGAGAGA+AGG | 0.570746 | 3_4:+10528516 | None:intergenic |
| TTGCAGGTGGATTTGACAGG+AGG | 0.571495 | 3_4:-10529497 | Msa0489850:intron |
| TTACCGGCAAAGTACGCTAA+AGG | 0.575384 | 3_4:+10527588 | None:intergenic |
| CTTAGAATGTCCTATATGGT+AGG | 0.578425 | 3_4:-10527858 | Msa0489850:CDS |
| ACCATATAGGACATTCTAAG+TGG | 0.589608 | 3_4:+10527861 | None:intergenic |
| GTCTCATCTCTACCCAACAA+AGG | 0.590435 | 3_4:-10527496 | Msa0489850:three_prime_UTR |
| AACTATTGTGGGGAGCTGCA+TGG | 0.591973 | 3_4:-10528649 | Msa0489850:CDS |
| TGCACATGTCCTTCTCTCAA+GGG | 0.598418 | 3_4:-10528525 | Msa0489850:intron |
| TTCAAGGTCAGAGGTCAGGA+AGG | 0.600039 | 3_4:-10531374 | Msa0489850:CDS |
| CCATCACATCCTATTGTCTG+TGG | 0.600403 | 3_4:+10527768 | None:intergenic |
| AGATGGTGGTAGACTATGAA+GGG | 0.603219 | 3_4:-10527452 | Msa0489850:three_prime_UTR |
| TCAACCTGATATCTTCAGCT+GGG | 0.606032 | 3_4:-10528564 | Msa0489850:CDS |
| GGTTCATACAGTGATTCACT+TGG | 0.609927 | 3_4:-10529053 | Msa0489850:CDS |
| TGTATACTGTGTAGTTGAAG+AGG | 0.614209 | 3_4:+10528318 | None:intergenic |
| CCAGCAACTTACATCAATGG+TGG | 0.615251 | 3_4:-10527621 | Msa0489850:CDS |
| AAGCACACATTTAACTGCGG+TGG | 0.617754 | 3_4:-10528036 | Msa0489850:CDS |
| ATGATGCATTAATCAAGTCA+TGG | 0.617950 | 3_4:-10527189 | Msa0489850:three_prime_UTR |
| GTGTTGATGTTGCACACTTG+AGG | 0.620658 | 3_4:+10529324 | None:intergenic |
| TGGAGTATATTACATTGGCA+AGG | 0.623619 | 3_4:+10531295 | None:intergenic |
| AAGTGTGCAACATCAACACC+TGG | 0.627700 | 3_4:-10529320 | Msa0489850:CDS |
| CAGCAACTTACATCAATGGT+GGG | 0.637988 | 3_4:-10527620 | Msa0489850:CDS |
| TCAGCCGCAACATCAGAACC+GGG | 0.642624 | 3_4:+10529191 | None:intergenic |
| CTTCAGGATGAACTATTGTG+GGG | 0.648937 | 3_4:-10528659 | Msa0489850:intron |
| GTATACTGTGTAGTTGAAGA+GGG | 0.651354 | 3_4:+10528319 | None:intergenic |
| TGAGGAGATAATCTGTGGCG+TGG | 0.651976 | 3_4:+10529342 | None:intergenic |
| CCCAAGAGAATTCACCACAG+AGG | 0.660661 | 3_4:-10527819 | Msa0489850:CDS |
| TGTGGATGAACTGATACTGA+AGG | 0.670286 | 3_4:+10527786 | None:intergenic |
| CAGACAATAGGATGTGATGG+AGG | 0.672550 | 3_4:-10527765 | Msa0489850:CDS |
| ACACCTGGAAGACTCTATGT+CGG | 0.686227 | 3_4:-10529305 | Msa0489850:CDS |
| ACACTTGAGGAGATAATCTG+TGG | 0.686648 | 3_4:+10529337 | None:intergenic |
| TCAACTACACAGTATACACA+AGG | 0.701067 | 3_4:-10528313 | Msa0489850:intron |
| GACGGATTTCCTGATGATCG+CGG | 0.711969 | 3_4:-10527663 | Msa0489850:CDS |
| GGAGGTCCAAACCAGAACGA+CGG | 0.712912 | 3_4:-10527681 | Msa0489850:CDS |
| AAGGCAATGAAGATCCTCTG+TGG | 0.751742 | 3_4:+10527805 | None:intergenic |
| ACAAAGCACACATTTAACTG+CGG | 0.756046 | 3_4:-10528039 | Msa0489850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTTTTTTTTTTTGAA+TGG | - | chr3_4:10528128-10528147 | Msa0489850:CDS | 10.0% |
| !! | AAAAAAAAAGAAAAGGAAAA+TGG | + | chr3_4:10527440-10527459 | None:intergenic | 15.0% |
| !! | TCTTAACAAAAAAAAAGAAA+AGG | + | chr3_4:10527447-10527466 | None:intergenic | 15.0% |
| !! | AATGAAAAACCTTATAATTT+GGG | + | chr3_4:10527731-10527750 | None:intergenic | 15.0% |
| !! | AAATGAAAAACCTTATAATT+TGG | + | chr3_4:10527732-10527751 | None:intergenic | 15.0% |
| !! | TTATTATTTGTGTTATGTTA+TGG | - | chr3_4:10527765-10527784 | Msa0489850:CDS | 15.0% |
| !!! | TCAGACAATATTTTAAAAAT+TGG | + | chr3_4:10527995-10528014 | None:intergenic | 15.0% |
| !!! | ATTTTTAAAATATTGTCTGA+TGG | - | chr3_4:10527995-10528014 | Msa0489850:CDS | 15.0% |
| !!! | TTTTTAAAATATTGTCTGAT+GGG | - | chr3_4:10527996-10528015 | Msa0489850:CDS | 15.0% |
| !! | AATTATAGCAAATATAAGAT+AGG | + | chr3_4:10528058-10528077 | None:intergenic | 15.0% |
| !!! | TATCTTATATTTGCTATAAT+TGG | - | chr3_4:10528057-10528076 | Msa0489850:CDS | 15.0% |
| !! | AAAAAAAAAAAATACTACGT+TGG | + | chr3_4:10528124-10528143 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTAATCACTTAAA+TGG | - | chr3_4:10528369-10528388 | Msa0489850:CDS | 15.0% |
| !!! | TATTTCCTTATTTTAACTTT+TGG | - | chr3_4:10528404-10528423 | Msa0489850:CDS | 15.0% |
| !! | CAAATAAAAAAGTTAAGTTA+TGG | - | chr3_4:10528576-10528595 | Msa0489850:CDS | 15.0% |
| !!! | AGAAATTTATTTTTTGTTCA+AGG | + | chr3_4:10528701-10528720 | None:intergenic | 15.0% |
| !! | AAAAAACTGTATGATAAATA+TGG | - | chr3_4:10528740-10528759 | Msa0489850:intron | 15.0% |
| !!! | TTACACATTTTTTTAATATG+AGG | + | chr3_4:10528799-10528818 | None:intergenic | 15.0% |
| !!! | ATTTTTATATGATGTTTCTT+TGG | + | chr3_4:10528822-10528841 | None:intergenic | 15.0% |
| !!! | TTTATTTTAGTTTTCGTTAT+AGG | + | chr3_4:10528952-10528971 | None:intergenic | 15.0% |
| !!! | CAAAATCAATTTTAAACATA+CGG | - | chr3_4:10529928-10529947 | Msa0489850:intron | 15.0% |
| !! | ACATAAATTTCAAATCAATA+GGG | - | chr3_4:10530503-10530522 | Msa0489850:intron | 15.0% |
| !!! | AAAATTTGTTGTAAAATTTC+AGG | - | chr3_4:10530805-10530824 | Msa0489850:intron | 15.0% |
| !!! | AAATCCTTATTGTTTTTTCA+AGG | - | chr3_4:10527322-10527341 | Msa0489850:three_prime_UTR | 20.0% |
| !!! | ATTGCAAAAGAATGTTTTTT+TGG | - | chr3_4:10528096-10528115 | Msa0489850:CDS | 20.0% |
| !!! | GTATGTTTGAAATTTTTCAA+TGG | - | chr3_4:10528190-10528209 | Msa0489850:intron | 20.0% |
| !! | TCTAATTCATGTTTCAATAT+AGG | - | chr3_4:10528283-10528302 | Msa0489850:intron | 20.0% |
| !! | CTAATTCATGTTTCAATATA+GGG | - | chr3_4:10528284-10528303 | Msa0489850:intron | 20.0% |
| !! | ATCAACCAAAAGTTAAAATA+AGG | + | chr3_4:10528412-10528431 | None:intergenic | 20.0% |
| !! | CAGTGACTTATATTATAATA+AGG | - | chr3_4:10528453-10528472 | Msa0489850:intron | 20.0% |
| !! | TTTATTCTGTTCTATAGAAT+TGG | + | chr3_4:10528547-10528566 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTTTGTCAATATT+AGG | - | chr3_4:10528600-10528619 | Msa0489850:CDS | 20.0% |
| !! | GTAAGTTCAATATATTCTTT+AGG | + | chr3_4:10528651-10528670 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGTTCAAGGAT+TGG | + | chr3_4:10528696-10528715 | None:intergenic | 20.0% |
| !!! | TTATTTTCATAAGCTATTCT+AGG | - | chr3_4:10529001-10529020 | Msa0489850:intron | 20.0% |
| !!! | TATTTTCATAAGCTATTCTA+GGG | - | chr3_4:10529002-10529021 | Msa0489850:intron | 20.0% |
| !! | AAAGTTTAGACAAAACAAAT+TGG | + | chr3_4:10530244-10530263 | None:intergenic | 20.0% |
| !! | TAGAATACTATAATAGTTGA+TGG | + | chr3_4:10530439-10530458 | None:intergenic | 20.0% |
| !! | GACATAAATTTCAAATCAAT+AGG | - | chr3_4:10530502-10530521 | Msa0489850:intron | 20.0% |
| !!! | AACAAATTTTATCAACAAAG+AGG | + | chr3_4:10530795-10530814 | None:intergenic | 20.0% |
| !! | AATCTAACATTAATTGTTAC+CGG | + | chr3_4:10531143-10531162 | None:intergenic | 20.0% |
| !! | TCTACTAAATCAAAAATAGA+TGG | - | chr3_4:10531243-10531262 | Msa0489850:intron | 20.0% |
| ! | GAAAATGGAGTATATTACAT+TGG | + | chr3_4:10527425-10527444 | None:intergenic | 25.0% |
| !!! | CATACAAGCATATTTTTGTT+GGG | - | chr3_4:10527694-10527713 | Msa0489850:CDS | 25.0% |
| !!! | ATACAAGCATATTTTTGTTG+GGG | - | chr3_4:10527695-10527714 | Msa0489850:CDS | 25.0% |
| ! | AAAAACCTTATAATTTGGGT+TGG | + | chr3_4:10527727-10527746 | None:intergenic | 25.0% |
| !!! | CCTCATACAATTTTGTTTAA+AGG | + | chr3_4:10528030-10528049 | None:intergenic | 25.0% |
| ! | CCTTTAAACAAAATTGTATG+AGG | - | chr3_4:10528027-10528046 | Msa0489850:CDS | 25.0% |
| ! | AAATTTCAAACATACTACGT+TGG | + | chr3_4:10528185-10528204 | None:intergenic | 25.0% |
| ! | AAACAGAGACTAAATAAACT+AGG | + | chr3_4:10528354-10528373 | None:intergenic | 25.0% |
| ! | AAACGATTCTATTATGTACA+TGG | - | chr3_4:10528511-10528530 | Msa0489850:intron | 25.0% |
| !! | CAATATATTCTTTAGGCTTT+TGG | + | chr3_4:10528644-10528663 | None:intergenic | 25.0% |
| !! | CAAAATTATTGATTGAAGCT+AGG | + | chr3_4:10528773-10528792 | None:intergenic | 25.0% |
| ! | ATGCAAGTGAAATTATAGAA+TGG | + | chr3_4:10529150-10529169 | None:intergenic | 25.0% |
| !! | TGTGAAATTCAATTTTCCAA+TGG | - | chr3_4:10529259-10529278 | Msa0489850:CDS | 25.0% |
| ! | AATTGAATATGGAAAGAGAA+TGG | - | chr3_4:10529313-10529332 | Msa0489850:CDS | 25.0% |
| ! | ATTGAATATGGAAAGAGAAT+GGG | - | chr3_4:10529314-10529333 | Msa0489850:CDS | 25.0% |
| ! | AAATGTTGATCACAAATGTT+GGG | - | chr3_4:10529442-10529461 | Msa0489850:CDS | 25.0% |
| ! | AACAAAAGCTTAGAATAAGT+TGG | + | chr3_4:10529596-10529615 | None:intergenic | 25.0% |
| ! | TGAGTATCACTATTACTATT+GGG | - | chr3_4:10529815-10529834 | Msa0489850:intron | 25.0% |
| !!! | ACAATTTTGGTTGTTAAGAT+CGG | - | chr3_4:10529884-10529903 | Msa0489850:intron | 25.0% |
| !! | ATCAATTTTAAACATACGGT+CGG | - | chr3_4:10529932-10529951 | Msa0489850:intron | 25.0% |
| ! | TCTCTCTAATAGTAAGAAAT+AGG | + | chr3_4:10529989-10530008 | None:intergenic | 25.0% |
| ! | AATAGGCATTATTTATCTTC+AGG | - | chr3_4:10530037-10530056 | Msa0489850:intron | 25.0% |
| ! | TGCTGTTAAATACTACAATT+TGG | - | chr3_4:10530103-10530122 | Msa0489850:intron | 25.0% |
| ! | ATAAGAACTTTGATCAGTAT+AGG | - | chr3_4:10530328-10530347 | Msa0489850:intron | 25.0% |
| ! | ATGAAATCATTCTCTATTCT+TGG | + | chr3_4:10530469-10530488 | None:intergenic | 25.0% |
| !! | GGCATATAGAGTATTATAAA+GGG | - | chr3_4:10530524-10530543 | Msa0489850:intron | 25.0% |
| !! | TTTCAGGTAGACTATATATT+AGG | - | chr3_4:10530821-10530840 | Msa0489850:intron | 25.0% |
| ! | TGATTCATTGAATGGAAAAA+TGG | + | chr3_4:10530980-10530999 | None:intergenic | 25.0% |
| ! | ACTAAATCAAAAATAGATGG+TGG | - | chr3_4:10531246-10531265 | Msa0489850:intron | 25.0% |
| ! | GTAAAACATAGTAAAGATGT+TGG | + | chr3_4:10531350-10531369 | None:intergenic | 25.0% |
| !! | TTACTATGTTTTACACTACA+TGG | - | chr3_4:10531356-10531375 | Msa0489850:CDS | 25.0% |
| !!! | AGCGATTACATAAGTTTTTT+GGG | + | chr3_4:10531394-10531413 | None:intergenic | 25.0% |
| !!! | AAGCGATTACATAAGTTTTT+TGG | + | chr3_4:10531395-10531414 | None:intergenic | 25.0% |
| ! | TTCTTCACAGTAATTCATAA+AGG | - | chr3_4:10531477-10531496 | Msa0489850:CDS | 25.0% |
| !!! | GTATTTTAGATGATCTGAAT+TGG | + | chr3_4:10531503-10531522 | None:intergenic | 25.0% |
| CTGACCTTGAAAAAACAATA+AGG | + | chr3_4:10527329-10527348 | None:intergenic | 30.0% | |
| !!! | TATTGTTTTTTCAAGGTCAG+AGG | - | chr3_4:10527329-10527348 | Msa0489850:three_prime_UTR | 30.0% |
| TGCTAAACTCTGACATAAAA+TGG | + | chr3_4:10527665-10527684 | None:intergenic | 30.0% | |
| AAAAATATGCTTGTATGGTG+AGG | + | chr3_4:10527691-10527710 | None:intergenic | 30.0% | |
| CCAACAAAAATATGCTTGTA+TGG | + | chr3_4:10527696-10527715 | None:intergenic | 30.0% | |
| !! | CCATACAAGCATATTTTTGT+TGG | - | chr3_4:10527693-10527712 | Msa0489850:CDS | 30.0% |
| TGAATCCAACCCAAATTATA+AGG | - | chr3_4:10527719-10527738 | Msa0489850:CDS | 30.0% | |
| ATCTCGATTATATTACTGTC+TGG | - | chr3_4:10527896-10527915 | Msa0489850:intron | 30.0% | |
| TAGTTCAATTGTGGTTGAAT+CGG | - | chr3_4:10527925-10527944 | Msa0489850:intron | 30.0% | |
| GATCTTACTGTTTCAATCAT+CGG | - | chr3_4:10527968-10527987 | Msa0489850:intron | 30.0% | |
| AAGTAATAACAGATTCAGCA+AGG | + | chr3_4:10528253-10528272 | None:intergenic | 30.0% | |
| CTAAATAAACTAGGCATCAA+AGG | + | chr3_4:10528345-10528364 | None:intergenic | 30.0% | |
| ! | TACAATTTGTTCGTCCTATT+CGG | - | chr3_4:10528859-10528878 | Msa0489850:intron | 30.0% |
| ! | ATCAAGTTGTTTATCCGAAT+AGG | + | chr3_4:10528876-10528895 | None:intergenic | 30.0% |
| TTTGAGAGAGCTTATGAAAA+CGG | + | chr3_4:10529071-10529090 | None:intergenic | 30.0% | |
| AAATTATAGAATGGCGTGTT+TGG | + | chr3_4:10529141-10529160 | None:intergenic | 30.0% | |
| ATTTCACTTGCATTATCCAA+TGG | - | chr3_4:10529157-10529176 | Msa0489850:CDS | 30.0% | |
| !! | ATACACAAACATTGTTTTGC+AGG | - | chr3_4:10529199-10529218 | Msa0489850:CDS | 30.0% |
| CAACATTTGTGATCAACATT+TGG | + | chr3_4:10529443-10529462 | None:intergenic | 30.0% | |
| CAAATGTTGATCACAAATGT+TGG | - | chr3_4:10529441-10529460 | Msa0489850:CDS | 30.0% | |
| TATGTATCTTCAAACAATCC+CGG | - | chr3_4:10529503-10529522 | Msa0489850:intron | 30.0% | |
| ! | CTTATTCTAAGCTTTTGTTG+AGG | - | chr3_4:10529597-10529616 | Msa0489850:intron | 30.0% |
| CCAGAATATGAGCAATAAAA+TGG | + | chr3_4:10529698-10529717 | None:intergenic | 30.0% | |
| ! | CCATTTTATTGCTCATATTC+TGG | - | chr3_4:10529695-10529714 | Msa0489850:intron | 30.0% |
| GTGAGTATCACTATTACTAT+TGG | - | chr3_4:10529814-10529833 | Msa0489850:intron | 30.0% | |
| GAGTATCACTATTACTATTG+GGG | - | chr3_4:10529816-10529835 | Msa0489850:intron | 30.0% | |
| TCTACTTGTATCGTTCTAAT+AGG | - | chr3_4:10530020-10530039 | Msa0489850:intron | 30.0% | |
| ! | GGGCATATAGAGTATTATAA+AGG | - | chr3_4:10530523-10530542 | Msa0489850:intron | 30.0% |
| TATTGCTTGAATTAATGTGC+AGG | - | chr3_4:10530559-10530578 | Msa0489850:intron | 30.0% | |
| ATTGCTTGAATTAATGTGCA+GGG | - | chr3_4:10530560-10530579 | Msa0489850:intron | 30.0% | |
| TACAACCTATTCCAAGTATA+TGG | - | chr3_4:10530645-10530664 | Msa0489850:intron | 30.0% | |
| ! | GCAACAGTTCTTAAAGTATT+TGG | + | chr3_4:10530715-10530734 | None:intergenic | 30.0% |
| TGAATTCTCTTGGGAAAATA+TGG | + | chr3_4:10530887-10530906 | None:intergenic | 30.0% | |
| GAATCAGAACCCTAATATAT+TGG | - | chr3_4:10530994-10531013 | Msa0489850:intron | 30.0% | |
| AATAAAGACGAATGCAAAGA+TGG | + | chr3_4:10531439-10531458 | None:intergenic | 30.0% | |
| !! | CTCTATAGTTTGGTTTGCAT+TGG | + | chr3_4:10527291-10527310 | None:intergenic | 35.0% |
| ACCAAACTATAGAGAAGCTT+TGG | - | chr3_4:10527297-10527316 | Msa0489850:three_prime_UTR | 35.0% | |
| !! | ATTTGATTTGTTGGTCTGGA+GGG | + | chr3_4:10527366-10527385 | None:intergenic | 35.0% |
| !! | TGGATCTCCATTTGATTTGT+TGG | + | chr3_4:10527375-10527394 | None:intergenic | 35.0% |
| ATCAAATGGAGATCCAATTC+TGG | - | chr3_4:10527379-10527398 | Msa0489850:three_prime_UTR | 35.0% | |
| TGGAGTATATTACATTGGCA+AGG | + | chr3_4:10527420-10527439 | None:intergenic | 35.0% | |
| CATACATGTCGTTGCTATAT+AGG | + | chr3_4:10527533-10527552 | None:intergenic | 35.0% | |
| CTATATAGCAACGACATGTA+TGG | - | chr3_4:10527531-10527550 | Msa0489850:three_prime_UTR | 35.0% | |
| TATCATCGATGTCAATGTGT+CGG | - | chr3_4:10527618-10527637 | Msa0489850:CDS | 35.0% | |
| ! | TGTGTTATGTTATGGCCTTA+TGG | - | chr3_4:10527773-10527792 | Msa0489850:CDS | 35.0% |
| !! | GTGTTATGTTATGGCCTTAT+GGG | - | chr3_4:10527774-10527793 | Msa0489850:CDS | 35.0% |
| !! | TGTTATGTTATGGCCTTATG+GGG | - | chr3_4:10527775-10527794 | Msa0489850:CDS | 35.0% |
| ! | TATGCAATTTTACCCCCATA+AGG | + | chr3_4:10527791-10527810 | None:intergenic | 35.0% |
| ! | TTTAAAACATCGTAGCCAGA+CGG | + | chr3_4:10527833-10527852 | None:intergenic | 35.0% |
| AAACAAGGAATTGGGCAATT+CGG | + | chr3_4:10527863-10527882 | None:intergenic | 35.0% | |
| AAACCGGTAAACAAGGAATT+GGG | + | chr3_4:10527871-10527890 | None:intergenic | 35.0% | |
| ATAATCGAGATCAAGCAAAC+CGG | + | chr3_4:10527887-10527906 | None:intergenic | 35.0% | |
| TGGTTGAACTAGTTCAATTG+TGG | - | chr3_4:10527916-10527935 | Msa0489850:intron | 35.0% | |
| AAGAAGCTAAAAACAGCTCA+TGG | - | chr3_4:10529035-10529054 | Msa0489850:CDS | 35.0% | |
| !! | TTAGCACTTTGTTGTTCCAT+TGG | + | chr3_4:10529176-10529195 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTGAATGCCAT+TGG | + | chr3_4:10529278-10529297 | None:intergenic | 35.0% |
| TCACAACAACAATGCTATCA+TGG | - | chr3_4:10529285-10529304 | Msa0489850:CDS | 35.0% | |
| TCATGGAGCACAATTGAATA+TGG | - | chr3_4:10529302-10529321 | Msa0489850:CDS | 35.0% | |
| TTGCTCATATTCTGGATTCA+AGG | - | chr3_4:10529703-10529722 | Msa0489850:intron | 35.0% | |
| ATCTTCAGGATGAACTATTG+TGG | - | chr3_4:10530051-10530070 | Msa0489850:intron | 35.0% | |
| TCTTCAGGATGAACTATTGT+GGG | - | chr3_4:10530052-10530071 | Msa0489850:intron | 35.0% | |
| TACAATTTGGCCAAGTCTTT+GGG | - | chr3_4:10530116-10530135 | Msa0489850:intron | 35.0% | |
| GTATACTGTGTAGTTGAAGA+GGG | + | chr3_4:10530396-10530415 | None:intergenic | 35.0% | |
| TGTATACTGTGTAGTTGAAG+AGG | + | chr3_4:10530397-10530416 | None:intergenic | 35.0% | |
| TCAACTACACAGTATACACA+AGG | - | chr3_4:10530399-10530418 | Msa0489850:intron | 35.0% | |
| TTGCTTGAATTAATGTGCAG+GGG | - | chr3_4:10530561-10530580 | Msa0489850:intron | 35.0% | |
| ACAAAGCACACATTTAACTG+CGG | - | chr3_4:10530673-10530692 | Msa0489850:intron | 35.0% | |
| TCCACTTAGAATGTCCTATA+TGG | - | chr3_4:10530850-10530869 | Msa0489850:intron | 35.0% | |
| ACCATATAGGACATTCTAAG+TGG | + | chr3_4:10530854-10530873 | None:intergenic | 35.0% | |
| CTTAGAATGTCCTATATGGT+AGG | - | chr3_4:10530854-10530873 | Msa0489850:intron | 35.0% | |
| ATGTCCTATATGGTAGGTTA+TGG | - | chr3_4:10530860-10530879 | Msa0489850:intron | 35.0% | |
| ! | TAGGGTTCTGATTCATTGAA+TGG | + | chr3_4:10530988-10531007 | None:intergenic | 35.0% |
| CAGAACCCTAATATATTGGT+TGG | - | chr3_4:10530998-10531017 | Msa0489850:intron | 35.0% | |
| TGGCTCCAACCAATATATTA+GGG | + | chr3_4:10531006-10531025 | None:intergenic | 35.0% | |
| ATGGCTCCAACCAATATATT+AGG | + | chr3_4:10531007-10531026 | None:intergenic | 35.0% | |
| TAGATTTGACTCTGATAGCA+AGG | - | chr3_4:10531157-10531176 | Msa0489850:intron | 35.0% | |
| TTAGTAGACATCCCTTTGTT+GGG | + | chr3_4:10531231-10531250 | None:intergenic | 35.0% | |
| TTTAGTAGACATCCCTTTGT+TGG | + | chr3_4:10531232-10531251 | None:intergenic | 35.0% | |
| GTTACTTCTTACATGCTTGC+TGG | - | chr3_4:10527252-10527271 | Msa0489850:three_prime_UTR | 40.0% | |
| GCCAAAGCTTCTCTATAGTT+TGG | + | chr3_4:10527301-10527320 | None:intergenic | 40.0% | |
| !!! | TTTTTTCAAGGTCAGAGGTC+AGG | - | chr3_4:10527334-10527353 | Msa0489850:three_prime_UTR | 40.0% |
| !! | CATTTGATTTGTTGGTCTGG+AGG | + | chr3_4:10527367-10527386 | None:intergenic | 40.0% |
| CTCCAGACCAACAAATCAAA+TGG | - | chr3_4:10527365-10527384 | Msa0489850:three_prime_UTR | 40.0% | |
| !! | CTCCATTTGATTTGTTGGTC+TGG | + | chr3_4:10527370-10527389 | None:intergenic | 40.0% |
| TGTCGTTGCTATATAGGTGA+CGG | + | chr3_4:10527527-10527546 | None:intergenic | 40.0% | |
| CACATGTGTCAATCTCGTAT+CGG | + | chr3_4:10527566-10527585 | None:intergenic | 40.0% | |
| !! | GTTATGTTATGGCCTTATGG+GGG | - | chr3_4:10527776-10527795 | Msa0489850:CDS | 40.0% |
| ! | TTGCCCAATTCCTTGTTTAC+CGG | - | chr3_4:10527865-10527884 | Msa0489850:CDS | 40.0% |
| CAAACCGGTAAACAAGGAAT+TGG | + | chr3_4:10527872-10527891 | None:intergenic | 40.0% | |
| ATCAAGCAAACCGGTAAACA+AGG | + | chr3_4:10527878-10527897 | None:intergenic | 40.0% | |
| GAAACAGTAAGATCACCTCT+AGG | + | chr3_4:10527962-10527981 | None:intergenic | 40.0% | |
| AATATTGTCTGATGGGAGCT+TGG | - | chr3_4:10528003-10528022 | Msa0489850:CDS | 40.0% | |
| ATTATTAACCAACAAGCCCG+TGG | - | chr3_4:10528157-10528176 | Msa0489850:intron | 40.0% | |
| GGTACTTGGTATGTTTGGTT+TGG | + | chr3_4:10528220-10528239 | None:intergenic | 40.0% | |
| ! | GGTAAGGTACTTGGTATGTT+TGG | + | chr3_4:10528225-10528244 | None:intergenic | 40.0% |
| ! | AAGGTACATGGTAAGGTACT+TGG | + | chr3_4:10528234-10528253 | None:intergenic | 40.0% |
| ATTCAGCAAGGTACATGGTA+AGG | + | chr3_4:10528241-10528260 | None:intergenic | 40.0% | |
| AACAGATTCAGCAAGGTACA+TGG | + | chr3_4:10528246-10528265 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTAGGGAGCTTA+CGG | - | chr3_4:10529011-10529030 | Msa0489850:CDS | 40.0% |
| !! | CACAAACATTGTTTTGCAGG+TGG | - | chr3_4:10529202-10529221 | Msa0489850:CDS | 40.0% |
| GCTCTTGCTTCTTTCATTTG+TGG | + | chr3_4:10529341-10529360 | None:intergenic | 40.0% | |
| ACACTTGAGGAGATAATCTG+TGG | + | chr3_4:10529378-10529397 | None:intergenic | 40.0% | |
| TTGGGAAAGACCAGAAGATA+TGG | - | chr3_4:10529460-10529479 | Msa0489850:CDS | 40.0% | |
| CTAACAGTGTCCATATCTTC+TGG | + | chr3_4:10529473-10529492 | None:intergenic | 40.0% | |
| TCTAAAAACAATAGACGCCG+CGG | + | chr3_4:10529564-10529583 | None:intergenic | 40.0% | |
| ! | CAGTTTGCTTTGCAGTATCA+AGG | - | chr3_4:10529638-10529657 | Msa0489850:intron | 40.0% |
| GGTTCATACAGTGATTCACT+TGG | - | chr3_4:10529659-10529678 | Msa0489850:intron | 40.0% | |
| CCAATACTCGGATTCTTACT+CGG | - | chr3_4:10529765-10529784 | Msa0489850:intron | 40.0% | |
| TCACTATTACTATTGGGGTC+TGG | - | chr3_4:10529821-10529840 | Msa0489850:intron | 40.0% | |
| ! | TTACGCGTAGCAGACAATTT+TGG | - | chr3_4:10529871-10529890 | Msa0489850:intron | 40.0% |
| ! | TCACTGTGTGACACAGTTTT+TGG | - | chr3_4:10529957-10529976 | Msa0489850:intron | 40.0% |
| CTTCAGGATGAACTATTGTG+GGG | - | chr3_4:10530053-10530072 | Msa0489850:intron | 40.0% | |
| CTACAATTTGGCCAAGTCTT+TGG | - | chr3_4:10530115-10530134 | Msa0489850:intron | 40.0% | |
| ATCAACCTGATATCTTCAGC+TGG | - | chr3_4:10530147-10530166 | Msa0489850:intron | 40.0% | |
| TCAACCTGATATCTTCAGCT+GGG | - | chr3_4:10530148-10530167 | Msa0489850:intron | 40.0% | |
| TTATCCCAGCTGAAGATATC+AGG | + | chr3_4:10530155-10530174 | None:intergenic | 40.0% | |
| AGCTGGGATAACAAATATGC+TGG | - | chr3_4:10530164-10530183 | Msa0489850:intron | 40.0% | |
| TTCAACTTACCCTTGAGAGA+AGG | + | chr3_4:10530199-10530218 | None:intergenic | 40.0% | |
| GTAGTTGAAGAGGGTGAATT+GGG | + | chr3_4:10530387-10530406 | None:intergenic | 40.0% | |
| TGTAGTTGAAGAGGGTGAAT+TGG | + | chr3_4:10530388-10530407 | None:intergenic | 40.0% | |
| TGCTTGAATTAATGTGCAGG+GGG | - | chr3_4:10530562-10530581 | Msa0489850:intron | 40.0% | |
| ACATACTGAAGATTGCTTGC+AGG | + | chr3_4:10530604-10530623 | None:intergenic | 40.0% | |
| AGCTGCCATATACTTGGAAT+AGG | + | chr3_4:10530653-10530672 | None:intergenic | 40.0% | |
| CTTTGTAGCTGCCATATACT+TGG | + | chr3_4:10530659-10530678 | None:intergenic | 40.0% | |
| AAGAACTGTTGCGAAAAGAC+AGG | - | chr3_4:10530723-10530742 | Msa0489850:intron | 40.0% | |
| TGGACCATAACCTACCATAT+AGG | + | chr3_4:10530867-10530886 | None:intergenic | 40.0% | |
| TGTGGATGAACTGATACTGA+AGG | + | chr3_4:10530929-10530948 | None:intergenic | 40.0% | |
| TCAGTTCATCCACAGACAAT+AGG | - | chr3_4:10530935-10530954 | Msa0489850:intron | 40.0% | |
| ! | ATATTGGTTGGAGCCATAGT+TGG | - | chr3_4:10531010-10531029 | Msa0489850:intron | 40.0% |
| GAACCAGCAACTTACATCAA+TGG | - | chr3_4:10531088-10531107 | Msa0489850:intron | 40.0% | |
| CAGCAACTTACATCAATGGT+GGG | - | chr3_4:10531092-10531111 | Msa0489850:intron | 40.0% | |
| ! | TACATCAATGGTGGGATTGT+TGG | - | chr3_4:10531100-10531119 | Msa0489850:intron | 40.0% |
| TCTCATCTCTACCCAACAAA+GGG | - | chr3_4:10531217-10531236 | Msa0489850:intron | 40.0% | |
| ! | TAGATGGTGGTAGACTATGA+AGG | - | chr3_4:10531259-10531278 | Msa0489850:intron | 40.0% |
| ! | AGATGGTGGTAGACTATGAA+GGG | - | chr3_4:10531260-10531279 | Msa0489850:intron | 40.0% |
| ! | TCATGCTCACTGGTTGTCTT+GGG | + | chr3_4:10527210-10527229 | None:intergenic | 45.0% |
| ! | ATCATGCTCACTGGTTGTCT+TGG | + | chr3_4:10527211-10527230 | None:intergenic | 45.0% |
| GAAGTTCTCATCATGCTCAC+TGG | + | chr3_4:10527220-10527239 | None:intergenic | 45.0% | |
| ! | TGTCAATCTCGTATCGGTGA+TGG | + | chr3_4:10527560-10527579 | None:intergenic | 45.0% |
| TATCCTCTTCATACTCCGTC+TGG | - | chr3_4:10527815-10527834 | Msa0489850:CDS | 45.0% | |
| TCGGTTGAACTATGACCTAG+AGG | - | chr3_4:10527944-10527963 | Msa0489850:intron | 45.0% | |
| !! | AACATACTACGTTGGCTCCA+CGG | + | chr3_4:10528177-10528196 | None:intergenic | 45.0% |
| !! | GTTTTGCAGGTGGATTTGAC+AGG | - | chr3_4:10529212-10529231 | Msa0489850:CDS | 45.0% |
| ACAGGAGGCTATTATGATGC+AGG | - | chr3_4:10529230-10529249 | Msa0489850:CDS | 45.0% | |
| ! | GTGTTGATGTTGCACACTTG+AGG | + | chr3_4:10529391-10529410 | None:intergenic | 45.0% |
| AAGTGTGCAACATCAACACC+TGG | - | chr3_4:10529392-10529411 | Msa0489850:CDS | 45.0% | |
| ACACCTGGAAGACTCTATGT+CGG | - | chr3_4:10529407-10529426 | Msa0489850:CDS | 45.0% | |
| ! | CCTAGAGCATCTCCAATACT+CGG | - | chr3_4:10529753-10529772 | Msa0489850:intron | 45.0% |
| CCGAGTAAGAATCCGAGTAT+TGG | + | chr3_4:10529768-10529787 | None:intergenic | 45.0% | |
| !! | CTGTGTGACACAGTTTTTGG+AGG | - | chr3_4:10529960-10529979 | Msa0489850:intron | 45.0% |
| ATCATCAGCTCCCAAAGACT+TGG | + | chr3_4:10530129-10530148 | None:intergenic | 45.0% | |
| TGCACATGTCCTTCTCTCAA+GGG | - | chr3_4:10530187-10530206 | Msa0489850:intron | 45.0% | |
| !! | CTACAGAGAGCATTGCTGAA+TGG | - | chr3_4:10530303-10530322 | Msa0489850:intron | 45.0% |
| AAGCACACATTTAACTGCGG+TGG | - | chr3_4:10530676-10530695 | Msa0489850:intron | 45.0% | |
| CCTCTGTGGTGAATTCTCTT+GGG | + | chr3_4:10530896-10530915 | None:intergenic | 45.0% | |
| TCCTCTGTGGTGAATTCTCT+TGG | + | chr3_4:10530897-10530916 | None:intergenic | 45.0% | |
| AAGGCAATGAAGATCCTCTG+TGG | + | chr3_4:10530910-10530929 | None:intergenic | 45.0% | |
| CCATCACATCCTATTGTCTG+TGG | + | chr3_4:10530947-10530966 | None:intergenic | 45.0% | |
| CCACAGACAATAGGATGTGA+TGG | - | chr3_4:10530944-10530963 | Msa0489850:intron | 45.0% | |
| CAGACAATAGGATGTGATGG+AGG | - | chr3_4:10530947-10530966 | Msa0489850:intron | 45.0% | |
| CTATAATCACCGCGATCATC+AGG | + | chr3_4:10531061-10531080 | None:intergenic | 45.0% | |
| CCACCATTGATGTAAGTTGC+TGG | + | chr3_4:10531094-10531113 | None:intergenic | 45.0% | |
| CCAGCAACTTACATCAATGG+TGG | - | chr3_4:10531091-10531110 | Msa0489850:intron | 45.0% | |
| TTACCGGCAAAGTACGCTAA+AGG | + | chr3_4:10531127-10531146 | None:intergenic | 45.0% | |
| GTCTCATCTCTACCCAACAA+AGG | - | chr3_4:10531216-10531235 | Msa0489850:intron | 45.0% | |
| TTCAAGGTCAGAGGTCAGGA+AGG | - | chr3_4:10527338-10527357 | Msa0489850:three_prime_UTR | 50.0% | |
| TCCAATTCTGGCATGTCCGA+TGG | - | chr3_4:10527391-10527410 | Msa0489850:three_prime_UTR | 50.0% | |
| ACCATCGGACATGCCAGAAT+TGG | + | chr3_4:10527395-10527414 | None:intergenic | 50.0% | |
| TACATTGGCAAGGCGACCAT+CGG | + | chr3_4:10527410-10527429 | None:intergenic | 50.0% | |
| TAGCCAGACGGAGTATGAAG+AGG | + | chr3_4:10527821-10527840 | None:intergenic | 50.0% | |
| !! | ACATACTACGTTGGCTCCAC+GGG | + | chr3_4:10528176-10528195 | None:intergenic | 50.0% |
| ! | TTGCAGGTGGATTTGACAGG+AGG | - | chr3_4:10529215-10529234 | Msa0489850:CDS | 50.0% |
| TGAGGAGATAATCTGTGGCG+TGG | + | chr3_4:10529373-10529392 | None:intergenic | 50.0% | |
| ACACCGACATAGAGTCTTCC+AGG | + | chr3_4:10529413-10529432 | None:intergenic | 50.0% | |
| GGAAGACTCTATGTCGGTGT+TGG | - | chr3_4:10529413-10529432 | Msa0489850:CDS | 50.0% | |
| ! | CAATCCCGGTTCTGATGTTG+CGG | - | chr3_4:10529517-10529536 | Msa0489850:intron | 50.0% |
| TTCAGCCGCAACATCAGAAC+CGG | + | chr3_4:10529525-10529544 | None:intergenic | 50.0% | |
| !! | CCGAGTATTGGAGATGCTCT+AGG | + | chr3_4:10529756-10529775 | None:intergenic | 50.0% |
| AACTATTGTGGGGAGCTGCA+TGG | - | chr3_4:10530063-10530082 | Msa0489850:intron | 50.0% | |
| ! | GGGAGCTGCATGGCTTTTTA+GGG | - | chr3_4:10530073-10530092 | Msa0489850:intron | 50.0% |
| GTGCACATGTCCTTCTCTCA+AGG | - | chr3_4:10530186-10530205 | Msa0489850:intron | 50.0% | |
| ATTTAACTGCGGTGGCGTCT+TGG | - | chr3_4:10530684-10530703 | Msa0489850:intron | 50.0% | |
| CCCAAGAGAATTCACCACAG+AGG | - | chr3_4:10530893-10530912 | Msa0489850:intron | 50.0% | |
| TTGGTTGGAGCCATAGTTGG+AGG | - | chr3_4:10531013-10531032 | Msa0489850:intron | 50.0% | |
| !! | CTGGTTTGGACCTCCAACTA+TGG | + | chr3_4:10531026-10531045 | None:intergenic | 50.0% |
| ! | GGAAATCCGTCGTTCTGGTT+TGG | + | chr3_4:10531040-10531059 | None:intergenic | 50.0% |
| CATCAGGAAATCCGTCGTTC+TGG | + | chr3_4:10531045-10531064 | None:intergenic | 50.0% | |
| ! | GACGGATTTCCTGATGATCG+CGG | - | chr3_4:10531049-10531068 | Msa0489850:intron | 50.0% |
| GGACCTTTAGCGTACTTTGC+CGG | - | chr3_4:10531121-10531140 | Msa0489850:intron | 50.0% | |
| !! | GTCGGTGTCACTGTCGTATC+TGG | - | chr3_4:10527636-10527655 | Msa0489850:CDS | 55.0% |
| TCAGCCGCAACATCAGAACC+GGG | + | chr3_4:10529524-10529543 | None:intergenic | 55.0% | |
| ! | GGGGAGCTGCATGGCTTTTT+AGG | - | chr3_4:10530072-10530091 | Msa0489850:intron | 55.0% |
| GGAGGTCCAAACCAGAACGA+CGG | - | chr3_4:10531031-10531050 | Msa0489850:intron | 55.0% | |
| AACTGCTGCTGCACTTGCCG+CGG | - | chr3_4:10529544-10529563 | Msa0489850:intron | 60.0% | |
| !! | CGTTGGCTCCACGGGCTTGT+TGG | + | chr3_4:10528168-10528187 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10527189 | 10531545 | 10527189 | ID=Msa0489850;Name=Msa0489850 |
| chr3_4 | mRNA | 10527189 | 10531545 | 10527189 | ID=Msa0489850-mRNA-1;Parent=Msa0489850;Name=Msa0489850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=37|1|1|1|1|1|6|392|485 |
| chr3_4 | exon | 10527189 | 10527907 | 10527189 | ID=Msa0489850-mRNA-1:exon:3431;Parent=Msa0489850-mRNA-1 |
| chr3_4 | exon | 10527990 | 10528153 | 10527990 | ID=Msa0489850-mRNA-1:exon:3430;Parent=Msa0489850-mRNA-1 |
| chr3_4 | exon | 10528314 | 10528425 | 10528314 | ID=Msa0489850-mRNA-1:exon:3429;Parent=Msa0489850-mRNA-1 |
| chr3_4 | exon | 10528526 | 10528675 | 10528526 | ID=Msa0489850-mRNA-1:exon:3428;Parent=Msa0489850-mRNA-1 |
| chr3_4 | exon | 10529010 | 10529513 | 10529010 | ID=Msa0489850-mRNA-1:exon:3427;Parent=Msa0489850-mRNA-1 |
| chr3_4 | exon | 10531308 | 10531545 | 10531308 | ID=Msa0489850-mRNA-1:exon:3426;Parent=Msa0489850-mRNA-1 |
| chr3_4 | five_prime_UTR | 10531509 | 10531545 | 10531509 | ID=Msa0489850-mRNA-1:five_prime_utr;Parent=Msa0489850-mRNA-1 |
| chr3_4 | CDS | 10531308 | 10531508 | 10531308 | ID=Msa0489850-mRNA-1:cds;Parent=Msa0489850-mRNA-1 |
| chr3_4 | CDS | 10529010 | 10529513 | 10529010 | ID=Msa0489850-mRNA-1:cds;Parent=Msa0489850-mRNA-1 |
| chr3_4 | CDS | 10528526 | 10528675 | 10528526 | ID=Msa0489850-mRNA-1:cds;Parent=Msa0489850-mRNA-1 |
| chr3_4 | CDS | 10528314 | 10528425 | 10528314 | ID=Msa0489850-mRNA-1:cds;Parent=Msa0489850-mRNA-1 |
| chr3_4 | CDS | 10527990 | 10528153 | 10527990 | ID=Msa0489850-mRNA-1:cds;Parent=Msa0489850-mRNA-1 |
| chr3_4 | CDS | 10527581 | 10527907 | 10527581 | ID=Msa0489850-mRNA-1:cds;Parent=Msa0489850-mRNA-1 |
| chr3_4 | three_prime_UTR | 10527189 | 10527580 | 10527189 | ID=Msa0489850-mRNA-1:three_prime_utr;Parent=Msa0489850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
