AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0347780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347780 MtrunA17_Chr3g0080171 98.760 484 6 0 1 484 1 484 0.0 1001
Msa0347780 MtrunA17_Chr3g0119821 58.874 462 185 2 25 482 35 495 0.0 553
Msa0347780 MtrunA17_Chr1g0195271 59.870 461 179 3 25 481 39 497 0.0 550
Msa0347780 MtrunA17_Chr3g0145261 57.296 466 190 5 25 483 24 487 0.0 534
Msa0347780 MtrunA17_Chr8g0391391 55.914 465 198 5 25 483 30 493 0.0 520
Msa0347780 MtrunA17_Chr4g0018301 53.947 456 207 3 25 480 45 497 7.09e-173 495
Msa0347780 MtrunA17_Chr4g0018361 53.183 487 210 9 8 480 7 489 1.57e-171 492
Msa0347780 MtrunA17_Chr5g0397201 49.156 474 230 6 15 484 30 496 1.37e-156 454
Msa0347780 MtrunA17_Chr8g0388051 47.881 472 230 8 25 484 28 495 2.05e-143 425
Msa0347780 MtrunA17_Chr3g0119371 45.492 488 248 8 5 480 24 505 1.16e-142 419
Msa0347780 MtrunA17_Chr1g0164201 47.107 484 244 8 4 481 5 482 3.12e-140 412
Msa0347780 MtrunA17_Chr5g0439311 43.952 496 253 10 1 480 10 496 5.43e-140 412
Msa0347780 MtrunA17_Chr3g0086311 44.513 483 254 6 5 481 6 480 7.26e-133 393
Msa0347780 MtrunA17_Chr4g0038131 46.581 468 231 10 25 478 28 490 5.31e-127 383
Msa0347780 MtrunA17_Chr5g0397181 46.384 401 204 6 86 482 1 394 5.80e-121 359
Msa0347780 MtrunA17_Chr3g0142501 41.880 468 248 10 26 478 58 516 3.28e-112 342
Msa0347780 MtrunA17_Chr8g0372031 42.979 470 244 12 24 478 62 522 3.47e-108 331
Msa0347780 MtrunA17_Chr3g0136381 42.368 380 206 5 4 377 5 377 7.76e-105 319
Msa0347780 MtrunA17_Chr4g0018341 51.264 277 133 2 204 480 2 276 2.46e-94 287
Msa0347780 MtrunA17_Chr2g0291461 42.339 496 235 18 25 483 111 592 4.44e-94 297
Msa0347780 MtrunA17_Chr3g0120661 40.741 486 242 19 25 477 116 588 1.54e-90 288
Msa0347780 MtrunA17_Chr4g0022271 95.000 140 2 1 324 463 20 154 2.25e-90 273
Msa0347780 MtrunA17_Chr5g0444721 43.127 371 196 6 122 478 193 562 1.54e-88 281
Msa0347780 MtrunA17_Chr5g0444721 42.286 175 93 4 4 171 12 185 6.71e-32 128
Msa0347780 MtrunA17_Chr3g0126111 35.019 514 283 17 3 477 79 580 2.36e-82 266
Msa0347780 MtrunA17_Chr4g0018351 60.000 185 73 1 25 209 30 213 4.81e-68 217
Msa0347780 MtrunA17_Chr7g0269571 56.213 169 62 2 324 481 43 210 7.37e-62 201
Msa0347780 MtrunA17_Chr1g0164181 44.910 167 91 1 312 478 164 329 6.01e-40 147
Msa0347780 MtrunA17_Chr1g0164181 47.150 193 96 4 67 257 3 191 6.43e-36 135
Msa0347780 MtrunA17_Chr4g0072811 37.805 164 96 4 316 477 3 162 5.29e-26 104
Msa0347780 MtrunA17_Chr3g0136371 48.936 94 47 1 377 470 1 93 1.84e-21 89.4
Msa0347780 MtrunA17_Chr7g0269561 39.130 92 38 2 234 321 25 102 7.25e-13 65.5
Msa0347780 MtrunA17_Chr5g0397171 61.538 39 15 0 25 63 41 79 2.60e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347780 AT1G71380.1 74.583 480 121 1 3 482 2 480 0.0 740
Msa0347780 AT1G22880.1 73.292 483 127 2 1 483 1 481 0.0 715
Msa0347780 AT1G22880.2 73.618 398 104 1 86 483 1 397 0.0 607
Msa0347780 AT4G02290.1 61.555 463 172 3 23 481 50 510 0.0 577
Msa0347780 AT1G02800.1 61.822 461 168 4 25 481 43 499 0.0 569
Msa0347780 AT1G70710.1 56.033 489 207 5 2 484 3 489 0.0 549
Msa0347780 AT1G23210.1 55.208 480 209 3 8 483 11 488 0.0 536
Msa0347780 AT4G39010.1 54.077 466 206 4 25 483 29 493 1.52e-179 513
Msa0347780 AT1G22880.3 75.617 324 78 1 1 324 1 323 3.10e-170 483
Msa0347780 AT4G02290.2 61.000 400 150 3 86 481 1 398 6.39e-170 484
Msa0347780 AT4G39000.1 47.347 490 250 4 1 483 1 489 1.49e-157 456
Msa0347780 AT4G23560.1 50.418 478 224 8 5 478 4 472 4.62e-154 447
Msa0347780 AT4G09740.1 49.687 479 226 9 5 478 4 472 5.06e-150 437
Msa0347780 AT4G38990.2 45.885 486 250 5 10 483 8 492 6.15e-148 432
Msa0347780 AT2G32990.1 45.935 492 245 9 6 478 13 502 1.54e-143 422
Msa0347780 AT4G11050.2 47.323 467 228 8 25 478 26 487 6.69e-141 416
Msa0347780 AT4G11050.1 47.323 467 228 8 25 478 26 487 2.18e-140 417
Msa0347780 AT4G11050.3 47.323 467 228 8 25 478 26 487 3.12e-140 417
Msa0347780 AT1G64390.1 47.639 466 228 8 25 478 25 486 4.01e-139 414
Msa0347780 AT3G43860.2 45.380 487 252 6 2 482 7 485 9.30e-139 408
Msa0347780 AT3G43860.1 45.380 487 252 6 2 482 7 485 9.30e-139 408
Msa0347780 AT4G39010.2 52.089 359 165 3 25 376 29 387 7.08e-134 392
Msa0347780 AT2G44540.1 44.654 477 254 7 8 478 16 488 4.93e-133 394
Msa0347780 AT2G44570.1 44.219 493 259 9 1 481 4 492 3.74e-132 392
Msa0347780 AT2G44550.1 44.748 476 252 7 8 478 18 487 3.86e-131 389
Msa0347780 AT2G44560.1 46.436 463 238 7 25 481 33 491 7.07e-127 378
Msa0347780 AT1G48930.1 45.923 466 236 7 25 478 30 491 1.19e-118 362
Msa0347780 AT1G75680.1 45.514 457 229 10 26 471 58 505 3.29e-117 355
Msa0347780 AT1G19940.2 43.074 462 243 10 25 475 48 500 7.41e-117 353
Msa0347780 AT1G19940.1 43.074 462 243 10 25 475 48 500 7.41e-117 353
Msa0347780 AT5G49720.1 40.546 513 256 17 7 482 88 588 2.24e-90 288
Msa0347780 AT4G38990.1 42.735 351 173 3 10 355 8 335 1.14e-89 278
Msa0347780 AT2G44570.2 41.337 404 221 9 1 392 4 403 1.25e-89 280
Msa0347780 AT4G24260.1 40.162 493 248 17 25 482 108 588 8.07e-87 279
Msa0347780 AT1G19940.3 42.308 364 195 8 25 377 48 407 6.24e-84 265
Msa0347780 AT1G65610.1 37.743 514 268 22 4 478 88 588 8.00e-84 271
Msa0347780 AT4G24260.3 38.918 388 195 15 25 377 108 488 1.27e-52 185
Msa0347780 AT4G24260.2 40.566 318 152 12 25 310 108 420 9.07e-50 177

Find 129 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACAGTTCTCAAGGTATT+TGG 0.188395 3_1:+9008366 None:intergenic
ATGGCTCCAACCAATATATT+AGG 0.202587 3_1:+9008074 None:intergenic
TGCTGTTAAATACTACAATT+TGG 0.250375 3_1:-9009011 Msa0347780:CDS
CTACAATTTGGCCAAGTCTT+TGG 0.251872 3_1:-9008999 Msa0347780:CDS
AGCAAGTGCAGCAGCAGTTT+CGG 0.284069 3_1:+9009579 None:intergenic
CCAGAATATGAGCAATAAAA+TGG 0.291892 3_1:+9009424 None:intergenic
TACAATTTGGCCAAGTCTTT+GGG 0.295167 3_1:-9008998 Msa0347780:CDS
TTTCAGGTAGACTATATATT+AGG 0.296374 3_1:-9008257 Msa0347780:intron
CTGGTTTGGACCTCCAACTA+TGG 0.301617 3_1:+9008055 None:intergenic
GCCAAAGCTTCTCTATAGTT+TGG 0.312895 3_1:+9011820 None:intergenic
GTTACTTCTTACATGCTTGC+TGG 0.313758 3_1:-9011866 Msa0347780:CDS
CAACACTTGTGATCAACATT+TGG 0.323361 3_1:+9009679 None:intergenic
TTATCCCAGCTGAAGATATC+AGG 0.329473 3_1:+9008962 None:intergenic
CTCCATTTGATTTGTTGGTC+AGG 0.329552 3_1:+9011751 None:intergenic
TGGATCTCCATTTGATTTGT+TGG 0.349293 3_1:+9011746 None:intergenic
TGAATCCTCTTGGGAAAATA+TGG 0.350676 3_1:+9008194 None:intergenic
TCATGGAGCACAATTGAATA+TGG 0.352249 3_1:-9009817 Msa0347780:CDS
GAATCAGAACCCTAATATAT+TGG 0.355685 3_1:-9008084 Msa0347780:CDS
CTCTATAGTTTGGTTTGCAT+TGG 0.357894 3_1:+9011830 None:intergenic
AATCTAACATTAATTGTTAC+CGG 0.359003 3_1:+9007938 None:intergenic
ATCAAATGGAGATCCAATTC+TGG 0.361824 3_1:-9011739 Msa0347780:CDS
TCCACTTAGAATGTCCTATA+TGG 0.366931 3_1:-9008228 Msa0347780:CDS
TACAACCTATTCCAAGTATA+TGG 0.367719 3_1:-9008433 Msa0347780:CDS
TAGGGTTCTGATTCATTGAA+TGG 0.377070 3_1:+9008093 None:intergenic
CATCAGGAAATCCGTCGTTC+TGG 0.380884 3_1:+9008036 None:intergenic
CTTTGTAGCTGCCATATACT+TGG 0.384398 3_1:+9008422 None:intergenic
GGAAATCCGTCGTTCTGGTT+TGG 0.384940 3_1:+9008041 None:intergenic
TACATCAATGGTGGGATTGT+TGG 0.387929 3_1:-9007978 Msa0347780:CDS
ACCATCGGACATGCCAGAAT+TGG 0.391790 3_1:+9011726 None:intergenic
GCTCTTGCTTCTTTCATTTG+TGG 0.396038 3_1:+9009781 None:intergenic
TTTGGTGTTGATTCTGCAAA+AGG 0.399495 3_1:-9011941 None:intergenic
TTCGGCAGCAACATCAGAAC+CGG 0.401931 3_1:+9009597 None:intergenic
ACACCAACATAGAGTCTTCC+AGG 0.404144 3_1:+9009709 None:intergenic
TTTGGTAGACATCCCTTTGT+TGG 0.410383 3_1:+9007849 None:intergenic
TCCTCTGTGGTGAATCCTCT+TGG 0.412922 3_1:+9008184 None:intergenic
TTGGTAGACATCCCTTTGTT+GGG 0.413690 3_1:+9007850 None:intergenic
TCTTCACAGTAATAACATAA+AGG 0.414916 3_1:-9007600 Msa0347780:three_prime_UTR
CTATAGTCACCGCGATCATC+AGG 0.416806 3_1:+9008020 None:intergenic
CAGTTTGCTTTGCAGTATCA+AGG 0.418073 3_1:-9009481 Msa0347780:CDS
CCACCATTGATGTAAGTTGC+TGG 0.419287 3_1:+9007987 None:intergenic
TTGCTCATATTCTGGATTCA+AGG 0.420522 3_1:-9009416 Msa0347780:intron
TGGCTCCAACCAATATATTA+GGG 0.420525 3_1:+9008075 None:intergenic
GGACCTTTAGCGTACTTTGC+CGG 0.422505 3_1:-9007957 Msa0347780:CDS
ACATACTGAAGATTGCTTGC+AGG 0.422983 3_1:+9008477 None:intergenic
CTAACAGTGTCCATATCTTC+TGG 0.423308 3_1:+9009649 None:intergenic
ACCAAACTATAGAGAAGCTT+TGG 0.423724 3_1:-9011821 Msa0347780:CDS
GAGGGAGTCTTCCTGACCTC+TGG 0.423979 3_1:+9011773 None:intergenic
TGTAGTTGAAGAGGGTGAAT+TGG 0.441166 3_1:+9008729 None:intergenic
ATGTCCTATATGGTAGGTTA+TGG 0.445656 3_1:-9008218 Msa0347780:CDS
TCAGTTCATCCACAGACAAT+AGG 0.447266 3_1:-9008143 Msa0347780:CDS
CTCCTGACCAACAAATCAAA+TGG 0.448231 3_1:-9011753 Msa0347780:CDS
TTGGGAAAGACCAGAAGATA+TGG 0.449982 3_1:-9009659 Msa0347780:CDS
AGCTGCCATATACTTGGAAT+AGG 0.451707 3_1:+9008428 None:intergenic
TTTGTTGAGGACTGCACAAA+AGG 0.452597 3_1:-9009509 Msa0347780:CDS
AACAAAAGTTTAGAATAAGT+TGG 0.454125 3_1:+9009526 None:intergenic
ATATTGGTTGGAGCCATAGT+TGG 0.454285 3_1:-9008068 Msa0347780:CDS
AATTGAATATGGAAAGAGAA+TGG 0.462216 3_1:-9009806 Msa0347780:CDS
ATCAACCTGATATCTTCAGC+TGG 0.462559 3_1:-9008967 Msa0347780:CDS
TCTTCAGGATGAACTATTGT+GGG 0.468517 3_1:-9009062 Msa0347780:intron
GTGCACATGTCCTTCTCTCA+AGG 0.474161 3_1:-9008928 Msa0347780:CDS
TGGACCATAACCTACCATAT+AGG 0.476059 3_1:+9008214 None:intergenic
AAATGTTGATCACAAGTGTT+GGG 0.476909 3_1:-9009677 Msa0347780:CDS
CAAATGTTGATCACAAGTGT+TGG 0.484072 3_1:-9009678 Msa0347780:CDS
ATTGAATATGGAAAGAGAAT+GGG 0.486477 3_1:-9009805 Msa0347780:CDS
GAAGTTCTCATTATGCTCAC+TGG 0.489573 3_1:+9011901 None:intergenic
ATTGTTGTTGTGAATGCCAT+TGG 0.494336 3_1:+9009844 None:intergenic
GTCTGTGGCGTGGCGAATTG+CGG 0.497557 3_1:+9009759 None:intergenic
AATAAAGACGAATGCAAAGA+TGG 0.498098 3_1:+9007642 None:intergenic
ATTTGATTTGTTGGTCAGGA+GGG 0.500109 3_1:+9011755 None:intergenic
ACAGGAGGCTATTATGATGC+AGG 0.500795 3_1:-9009889 Msa0347780:CDS
CATTTGATTTGTTGGTCAGG+AGG 0.504546 3_1:+9011754 None:intergenic
CCTCTGTGGTGAATCCTCTT+GGG 0.506991 3_1:+9008185 None:intergenic
TCACAACAACAATGTTATCA+TGG 0.509771 3_1:-9009834 Msa0347780:CDS
CAGAACCCTAATATATTGGT+TGG 0.511456 3_1:-9008080 Msa0347780:CDS
GTGTTGATGTTGCACATTTG+AGG 0.517874 3_1:+9009731 None:intergenic
TAGATTTGACTTTGATAGCA+AGG 0.518793 3_1:-9007921 Msa0347780:three_prime_UTR
ATCTTCAGGATGAACTATTG+TGG 0.519125 3_1:-9009063 Msa0347780:intron
ATCATCAGCTCCCAAAGACT+TGG 0.531480 3_1:+9008988 None:intergenic
GTAGTTGAAGAGGGTGAATT+GGG 0.534837 3_1:+9008730 None:intergenic
TACATCGGCAAGGCGACCAT+CGG 0.538069 3_1:+9011711 None:intergenic
ATAAGAACTTTGATCAGTAT+AGG 0.541520 3_1:-9008786 Msa0347780:CDS
AACTGCTGCTGCACTTGCTG+CGG 0.541749 3_1:-9009575 Msa0347780:CDS
TATGTATCTTCAAACAATCC+CGG 0.544424 3_1:-9009616 Msa0347780:CDS
TTGGTTGGAGCCATAGTTGG+AGG 0.545842 3_1:-9008065 Msa0347780:CDS
CTACAGAGAGCATTGCTGAA+TGG 0.545991 3_1:-9008811 Msa0347780:intron
TCTCATCTCTACCCAACAAA+GGG 0.546034 3_1:-9007861 Msa0347780:three_prime_UTR
TTGGTGTTGATTCTGCAAAA+GGG 0.546905 3_1:-9011940 None:intergenic
CCACAGACAATAGGATGTGA+TGG 0.547733 3_1:-9008134 Msa0347780:CDS
GAACCAGCAACTTACATCAA+TGG 0.548177 3_1:-9007990 Msa0347780:CDS
CAGATGGTGGTGGACTATGA+AGG 0.548948 3_1:-9007819 Msa0347780:three_prime_UTR
AGCTGGGATAACAAATATGC+TGG 0.549315 3_1:-9008950 Msa0347780:CDS
GAGAACTGTTGCGAAAAGAC+AGG 0.553255 3_1:-9008355 Msa0347780:intron
TCCAATTCTGGCATGTCCGA+TGG 0.555287 3_1:-9011727 Msa0347780:CDS
TTCAACTTACCCTTGAGAGA+AGG 0.570746 3_1:+9008918 None:intergenic
TTGCAGGTGGATTTGACAGG+AGG 0.571495 3_1:-9009904 Msa0347780:intron
TTACCGGCAAAGTACGCTAA+AGG 0.575384 3_1:+9007954 None:intergenic
GGAAGACTCTATGTTGGTGT+TGG 0.575499 3_1:-9009706 Msa0347780:CDS
GTAAAACATAGTAAAGATGT+TGG 0.575502 3_1:+9007731 None:intergenic
CTTAGAATGTCCTATATGGT+AGG 0.578425 3_1:-9008224 Msa0347780:CDS
ACCATATAGGACATTCTAAG+TGG 0.589608 3_1:+9008227 None:intergenic
GTCTCATCTCTACCCAACAA+AGG 0.590435 3_1:-9007862 Msa0347780:three_prime_UTR
AACTATTGTGGGGAGCTGCA+TGG 0.591973 3_1:-9009051 Msa0347780:CDS
TGCACATGTCCTTCTCTCAA+GGG 0.598418 3_1:-9008927 Msa0347780:intron
CCATCACATCCTATTGTCTG+TGG 0.600403 3_1:+9008134 None:intergenic
GGCTCATACAGTGATTCACT+TGG 0.605518 3_1:-9009460 Msa0347780:CDS
TCAACCTGATATCTTCAGCT+GGG 0.606032 3_1:-9008966 Msa0347780:CDS
AGATGGTGGTGGACTATGAA+GGG 0.613399 3_1:-9007818 Msa0347780:three_prime_UTR
TGTATACTGTGTAGTTGAAG+AGG 0.614209 3_1:+9008720 None:intergenic
CCAGCAACTTACATCAATGG+TGG 0.615251 3_1:-9007987 Msa0347780:CDS
AAGCACACATTTAACTGTGG+TGG 0.619659 3_1:-9008402 Msa0347780:CDS
AAATGTGCAACATCAACACC+TGG 0.628895 3_1:-9009727 Msa0347780:CDS
TCGGCAGCAACATCAGAACC+GGG 0.629928 3_1:+9009598 None:intergenic
ACTGTGAAGAAAGATGAGAA+AGG 0.633383 3_1:+9007613 None:intergenic
CAGCAACTTACATCAATGGT+GGG 0.637988 3_1:-9007986 Msa0347780:CDS
ACACCTGGAAGACTCTATGT+TGG 0.645134 3_1:-9009712 Msa0347780:CDS
CTTCAGGATGAACTATTGTG+GGG 0.648937 3_1:-9009061 Msa0347780:intron
GTATACTGTGTAGTTGAAGA+GGG 0.651354 3_1:+9008721 None:intergenic
ACATTTGAGGAGATAGTCTG+TGG 0.654390 3_1:+9009744 None:intergenic
TGGAGTATATTACATCGGCA+AGG 0.663925 3_1:+9011701 None:intergenic
CAGACAATAGGATGTGATGG+AGG 0.672550 3_1:-9008131 Msa0347780:CDS
TGAGGAGATAGTCTGTGGCG+TGG 0.675751 3_1:+9009749 None:intergenic
CCCAAGAGGATTCACCACAG+AGG 0.688585 3_1:-9008185 Msa0347780:CDS
TGATGCATTAATGCGAGCCG+CGG 0.689909 3_1:-9007550 Msa0347780:three_prime_UTR
TCAACTACACAGTATACACA+AGG 0.701067 3_1:-9008715 Msa0347780:intron
TGTGGATGAACTGATAGTGA+AGG 0.707912 3_1:+9008152 None:intergenic
GACGGATTTCCTGATGATCG+CGG 0.711969 3_1:-9008029 Msa0347780:CDS
GGAGGTCCAAACCAGAACGA+CGG 0.712912 3_1:-9008047 Msa0347780:CDS
ACAAAGCACACATTTAACTG+TGG 0.729394 3_1:-9008405 Msa0347780:CDS
AAGGCAATGAAGATCCTCTG+TGG 0.790898 3_1:+9008171 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAAGCAAAAA+TGG + chr3_1:9007798-9007817 None:intergenic 10.0%
!! AATGAAAAACATTATAATTT+GGG + chr3_1:9008069-9008088 None:intergenic 10.0%
!! AAATGAAAAACATTATAATT+TGG + chr3_1:9008070-9008089 None:intergenic 10.0%
!!! AATTGACTTATATTATATTA+AGG - chr3_1:9008808-9008827 Msa0347780:CDS 10.0%
!!! ATTGACTTATATTATATTAA+GGG - chr3_1:9008809-9008828 Msa0347780:intron 10.0%
!!! TTTTTAAAATATTGTCTGAT+GGG - chr3_1:9008376-9008395 Msa0347780:CDS 15.0%
!! AATATAGCAAATATAAGATA+GGG + chr3_1:9008438-9008457 None:intergenic 15.0%
!! AAATATAGCAAATATAAGAT+AGG + chr3_1:9008439-9008458 None:intergenic 15.0%
!!! TATCTTATATTTGCTATATT+TGG - chr3_1:9008438-9008457 Msa0347780:CDS 15.0%
!! AAATTTCAAAAATATTACGT+TGG + chr3_1:9008508-9008527 None:intergenic 15.0%
!!! TTTTTTTAATCACTTTTGAA+TGG - chr3_1:9008724-9008743 Msa0347780:CDS 15.0%
!!! TATTTCCTTATTTTAACTTT+TGG - chr3_1:9008759-9008778 Msa0347780:CDS 15.0%
!! TCAAATAAAAAAGTTAGTTA+TGG - chr3_1:9008930-9008949 Msa0347780:CDS 15.0%
!!! GAAATTTATTTTTTTGTTCA+AGG + chr3_1:9009063-9009082 None:intergenic 15.0%
!! AAAAAACTGTATGATAAATA+TGG - chr3_1:9009103-9009122 Msa0347780:intron 15.0%
!!! TATAGTTAAATATCTAGTTT+TGG - chr3_1:9010149-9010168 Msa0347780:intron 15.0%
!!! ATAAAATCAATTTTAAACAG+AGG - chr3_1:9010284-9010303 Msa0347780:intron 15.0%
!!! TAAAATCAATTTTAAACAGA+GGG - chr3_1:9010285-9010304 Msa0347780:intron 15.0%
!! ACTATAAATATAATAGTTGA+TGG + chr3_1:9010831-9010850 None:intergenic 15.0%
!! ACATAAATTTCAAATCAATA+TGG - chr3_1:9010901-9010920 Msa0347780:intron 15.0%
!!! AAAATTTGTTGTAAAATTTC+AGG - chr3_1:9011203-9011222 Msa0347780:intron 15.0%
!!! AAATCCTTATTGTTTTTTCA+AGG - chr3_1:9007680-9007699 Msa0347780:three_prime_UTR 20.0%
!! AAAAATGGAGTATATTACAT+CGG + chr3_1:9007783-9007802 None:intergenic 20.0%
!! TATTATTTGTGTTCTACTAA+CGG - chr3_1:9008104-9008123 Msa0347780:CDS 20.0%
!!! AAACAACTTCTATGTTTTTA+TGG - chr3_1:9008167-9008186 Msa0347780:CDS 20.0%
!!! AACAACTTCTATGTTTTTAT+GGG - chr3_1:9008168-9008187 Msa0347780:CDS 20.0%
!!! ATTTTTAAAACATTATCGTC+AGG + chr3_1:9008230-9008249 None:intergenic 20.0%
!! GATTATATTATTGTCTATTG+TGG - chr3_1:9008295-9008314 Msa0347780:intron 20.0%
!! TATCTTATTGTTTCAATCAT+CGG - chr3_1:9008348-9008367 Msa0347780:intron 20.0%
!!! TCAGACAATATTTTAAAAAC+TGG + chr3_1:9008375-9008394 None:intergenic 20.0%
!!! GTTTTTAAAATATTGTCTGA+TGG - chr3_1:9008375-9008394 Msa0347780:CDS 20.0%
!! TCTAATTCATGTTTCAATAT+AGG - chr3_1:9008599-9008618 Msa0347780:intron 20.0%
!! CTAATTCATGTTTCAATATA+GGG - chr3_1:9008600-9008619 Msa0347780:intron 20.0%
!! ATCAACCAAAAGTTAAAATA+AGG + chr3_1:9008767-9008786 None:intergenic 20.0%
!!! CTTTTTCTTTTGTCAATATT+AGG - chr3_1:9008954-9008973 Msa0347780:CDS 20.0%
!!! TTATTTTTTTGTTCAAGGAT+TGG + chr3_1:9009058-9009077 None:intergenic 20.0%
!!! AACAAAAGTTTAGAATAAGT+TGG + chr3_1:9009953-9009972 None:intergenic 20.0%
!! AAAGTTTAGACAAAACAAAT+TGG + chr3_1:9010606-9010625 None:intergenic 20.0%
!!! AACAAATTTTATCAACAAAG+AGG + chr3_1:9011193-9011212 None:intergenic 20.0%
!! AATCTAACATTAATTGTTAC+CGG + chr3_1:9011541-9011560 None:intergenic 20.0%
!!! TATTTTAGAGTATCTGAATT+TGG + chr3_1:9011902-9011921 None:intergenic 20.0%
! AAAAACATTATAATTTGGGC+TGG + chr3_1:9008065-9008084 None:intergenic 25.0%
!! AAAAACATAGAAGTTGTTTC+CGG + chr3_1:9008166-9008185 None:intergenic 25.0%
!!! ACAACTTCTATGTTTTTATG+GGG - chr3_1:9008169-9008188 Msa0347780:CDS 25.0%
!! TTGCCTATATATATCCTTTT+CGG - chr3_1:9008198-9008217 Msa0347780:CDS 25.0%
!!! CCTCATACAATTTTGTTTAA+AGG + chr3_1:9008410-9008429 None:intergenic 25.0%
! CCTTTAAACAAAATTGTATG+AGG - chr3_1:9008407-9008426 Msa0347780:CDS 25.0%
!!! GCAAAAGCATGTTTTTTTTT+TGG - chr3_1:9008480-9008499 Msa0347780:CDS 25.0%
! GAGAAAATGACTTAAAAACT+AGG + chr3_1:9008668-9008687 None:intergenic 25.0%
!!! AAGTCATTTTCTCTTTCTTT+TGG - chr3_1:9008675-9008694 Msa0347780:intron 25.0%
! TTTACTCTGTTCTATAGAAT+TGG + chr3_1:9008902-9008921 None:intergenic 25.0%
! AGTAAAATCAATGCATTCTT+AGG + chr3_1:9009014-9009033 None:intergenic 25.0%
!! CAAAATTATTGATTGAAGCT+AGG + chr3_1:9009136-9009155 None:intergenic 25.0%
! TACAATTTATTCGTCCTATT+TGG - chr3_1:9009218-9009237 Msa0347780:intron 25.0%
!! ATCAAGTTGTTTATCCAAAT+AGG + chr3_1:9009235-9009254 None:intergenic 25.0%
! ATGCAAGTGAAATTATAGAA+TGG + chr3_1:9009510-9009529 None:intergenic 25.0%
!! TGTGAAATTCAATTTTCCAA+TGG - chr3_1:9009616-9009635 Msa0347780:CDS 25.0%
! AATTGAATATGGAAAGAGAA+TGG - chr3_1:9009670-9009689 Msa0347780:CDS 25.0%
! ATTGAATATGGAAAGAGAAT+GGG - chr3_1:9009671-9009690 Msa0347780:CDS 25.0%
!! CTTATTCTAAACTTTTGTTG+AGG - chr3_1:9009954-9009973 Msa0347780:intron 25.0%
!!! TTTTGGTAGTATCACTATTA+GGG - chr3_1:9010166-9010185 Msa0347780:intron 25.0%
! TCTCTCTAATAGTAAGAAAT+AGG + chr3_1:9010351-9010370 None:intergenic 25.0%
! AATAGGCATTATTTATCTTC+AGG - chr3_1:9010399-9010418 Msa0347780:intron 25.0%
! TGCTGTTAAATACTACAATT+TGG - chr3_1:9010465-9010484 Msa0347780:intron 25.0%
! ATAAGAACTTTGATCAGTAT+AGG - chr3_1:9010690-9010709 Msa0347780:intron 25.0%
! ATGAAATCATTCTCTATTCT+TGG + chr3_1:9010867-9010886 None:intergenic 25.0%
!! TGGCTTATAGAGTATTATAA+AGG - chr3_1:9010921-9010940 Msa0347780:intron 25.0%
!! GGCTTATAGAGTATTATAAA+GGG - chr3_1:9010922-9010941 Msa0347780:intron 25.0%
!! TTTCAGGTAGACTATATATT+AGG - chr3_1:9011219-9011238 Msa0347780:intron 25.0%
! TGATTCATTGAATGGAAAAA+CGG + chr3_1:9011378-9011397 None:intergenic 25.0%
! GTAAAACATAGTAAAGATGT+TGG + chr3_1:9011748-9011767 None:intergenic 25.0%
!!! AGTGATTGCATAAGTTTTTT+GGG + chr3_1:9011792-9011811 None:intergenic 25.0%
!!! AAGTGATTGCATAAGTTTTT+TGG + chr3_1:9011793-9011812 None:intergenic 25.0%
! TCTTCACAGTAATAACATAA+AGG - chr3_1:9011876-9011895 Msa0347780:CDS 25.0%
!!! CATACAAGCCTATTTTTGTT+GGG - chr3_1:9008032-9008051 Msa0347780:CDS 30.0%
!!! ATACAAGCCTATTTTTGTTG+GGG - chr3_1:9008033-9008052 Msa0347780:CDS 30.0%
!! CAACTTCTATGTTTTTATGG+GGG - chr3_1:9008170-9008189 Msa0347780:CDS 30.0%
AGTCCGAAAAGGATATATAT+AGG + chr3_1:9008204-9008223 None:intergenic 30.0%
! TTTAAAACATTATCGTCAGG+TGG + chr3_1:9008227-9008246 None:intergenic 30.0%
ATTGTCTATTGTGGTTGAAT+CGG - chr3_1:9008304-9008323 Msa0347780:intron 30.0%
!! TTTAACTTTTGGTTGATGCA+TGG - chr3_1:9008770-9008789 Msa0347780:CDS 30.0%
AAATTATAGAATGGCGTGTT+TGG + chr3_1:9009501-9009520 None:intergenic 30.0%
ATTTCACTTGCATTATCCAA+TGG - chr3_1:9009517-9009536 Msa0347780:CDS 30.0%
!! ATACACAAACATTGTTTTGC+AGG - chr3_1:9009556-9009575 Msa0347780:CDS 30.0%
TCACAACAACAATGTTATCA+TGG - chr3_1:9009642-9009661 Msa0347780:CDS 30.0%
AAATGTTGATCACAAGTGTT+GGG - chr3_1:9009799-9009818 Msa0347780:CDS 30.0%
TATGTATCTTCAAACAATCC+CGG - chr3_1:9009860-9009879 Msa0347780:CDS 30.0%
CCAGAATATGAGCAATAAAA+TGG + chr3_1:9010055-9010074 None:intergenic 30.0%
! CCATTTTATTGCTCATATTC+TGG - chr3_1:9010052-9010071 Msa0347780:intron 30.0%
!! GTTTTGGTAGTATCACTATT+AGG - chr3_1:9010165-9010184 Msa0347780:intron 30.0%
! TTTGGTAGTATCACTATTAG+GGG - chr3_1:9010167-9010186 Msa0347780:intron 30.0%
! TTGGTTGTTAAGTTTGAGAT+CGG - chr3_1:9010241-9010260 Msa0347780:intron 30.0%
TCTACTTGTATCGTTCTAAT+AGG - chr3_1:9010382-9010401 Msa0347780:intron 30.0%
TATTGCTTGAATTAATGTGC+AGG - chr3_1:9010957-9010976 Msa0347780:intron 30.0%
ATTGCTTGAATTAATGTGCA+GGG - chr3_1:9010958-9010977 Msa0347780:intron 30.0%
TACAACCTATTCCAAGTATA+TGG - chr3_1:9011043-9011062 Msa0347780:intron 30.0%
GAATCAGAACCCTAATATAT+TGG - chr3_1:9011392-9011411 Msa0347780:intron 30.0%
! TAGATTTGACTTTGATAGCA+AGG - chr3_1:9011555-9011574 Msa0347780:intron 30.0%
TCTACCAAATCAAAAACAGA+TGG - chr3_1:9011641-9011660 Msa0347780:intron 30.0%
! TTACTATGTTTTACGCTACA+TGG - chr3_1:9011754-9011773 Msa0347780:CDS 30.0%
AATAAAGACGAATGCAAAGA+TGG + chr3_1:9011837-9011856 None:intergenic 30.0%
!! CTCTATAGTTTGGTTTGCAT+TGG + chr3_1:9007649-9007668 None:intergenic 35.0%
ACCAAACTATAGAGAAGCTT+TGG - chr3_1:9007655-9007674 Msa0347780:three_prime_UTR 35.0%
!! CTGGCCTTGAAAAAACAATA+AGG + chr3_1:9007687-9007706 None:intergenic 35.0%
!!! TATTGTTTTTTCAAGGCCAG+AGG - chr3_1:9007687-9007706 Msa0347780:three_prime_UTR 35.0%
!! ATTTGATTTGTTGGTCAGGA+GGG + chr3_1:9007724-9007743 None:intergenic 35.0%
!! TGGATCTCCATTTGATTTGT+TGG + chr3_1:9007733-9007752 None:intergenic 35.0%
ATCAAATGGAGATCCAATTC+TGG - chr3_1:9007737-9007756 Msa0347780:three_prime_UTR 35.0%
AAAAATAGGCTTGTATGGTG+AGG + chr3_1:9008029-9008048 None:intergenic 35.0%
CCAACAAAAATAGGCTTGTA+TGG + chr3_1:9008034-9008053 None:intergenic 35.0%
!!! CCATACAAGCCTATTTTTGT+TGG - chr3_1:9008031-9008050 Msa0347780:CDS 35.0%
GATTCAACCCCAACAAAAAT+AGG + chr3_1:9008043-9008062 None:intergenic 35.0%
CATTAGAACTCGTAACTTCT+AGG + chr3_1:9008143-9008162 None:intergenic 35.0%
AAACTAGACACTAGTCACTT+CGG + chr3_1:9008257-9008276 None:intergenic 35.0%
ATAATCGAGATCAAGCAAAC+CGG + chr3_1:9008281-9008300 None:intergenic 35.0%
! GGTAAGGTACTTGGTATATT+TGG + chr3_1:9008543-9008562 None:intergenic 35.0%
ATTTAGCAAGGTACATGGTA+AGG + chr3_1:9008559-9008578 None:intergenic 35.0%
AACAGATTTAGCAAGGTACA+TGG + chr3_1:9008564-9008583 None:intergenic 35.0%
TACCTTGCTAAATCTGTTAC+TGG - chr3_1:9008566-9008585 Msa0347780:intron 35.0%
ATCCAGTAACAGATTTAGCA+AGG + chr3_1:9008571-9008590 None:intergenic 35.0%
! TCAATGCATTCTTAGGCTTT+TGG + chr3_1:9009007-9009026 None:intergenic 35.0%
AAGAAGCTAAAAACAGCTCA+TGG - chr3_1:9009393-9009412 Msa0347780:intron 35.0%
! ATTGTTGTTGTGAATGCCAT+TGG + chr3_1:9009635-9009654 None:intergenic 35.0%
TCATGGAGCACAATTGAATA+TGG - chr3_1:9009659-9009678 Msa0347780:CDS 35.0%
CAACACTTGTGATCAACATT+TGG + chr3_1:9009800-9009819 None:intergenic 35.0%
CAAATGTTGATCACAAGTGT+TGG - chr3_1:9009798-9009817 Msa0347780:CDS 35.0%
TTGCTCATATTCTGGATTCA+AGG - chr3_1:9010060-9010079 Msa0347780:intron 35.0%
ATCTTCAGGATGAACTATTG+TGG - chr3_1:9010413-9010432 Msa0347780:intron 35.0%
TCTTCAGGATGAACTATTGT+GGG - chr3_1:9010414-9010433 Msa0347780:intron 35.0%
TACAATTTGGCCAAGTCTTT+GGG - chr3_1:9010478-9010497 Msa0347780:intron 35.0%
GTATACTGTGTAGTTGAAGA+GGG + chr3_1:9010758-9010777 None:intergenic 35.0%
TGTATACTGTGTAGTTGAAG+AGG + chr3_1:9010759-9010778 None:intergenic 35.0%
TCAACTACACAGTATACACA+AGG - chr3_1:9010761-9010780 Msa0347780:intron 35.0%
TTGCTTGAATTAATGTGCAG+GGG - chr3_1:9010959-9010978 Msa0347780:intron 35.0%
ACAAAGCACACATTTAACTG+TGG - chr3_1:9011071-9011090 Msa0347780:intron 35.0%
TCCACTTAGAATGTCCTATA+TGG - chr3_1:9011248-9011267 Msa0347780:intron 35.0%
ACCATATAGGACATTCTAAG+TGG + chr3_1:9011252-9011271 None:intergenic 35.0%
CTTAGAATGTCCTATATGGT+AGG - chr3_1:9011252-9011271 Msa0347780:intron 35.0%
ATGTCCTATATGGTAGGTTA+TGG - chr3_1:9011258-9011277 Msa0347780:intron 35.0%
TGAATCCTCTTGGGAAAATA+TGG + chr3_1:9011285-9011304 None:intergenic 35.0%
! TAGGGTTCTGATTCATTGAA+TGG + chr3_1:9011386-9011405 None:intergenic 35.0%
CAGAACCCTAATATATTGGT+TGG - chr3_1:9011396-9011415 Msa0347780:intron 35.0%
TGGCTCCAACCAATATATTA+GGG + chr3_1:9011404-9011423 None:intergenic 35.0%
ATGGCTCCAACCAATATATT+AGG + chr3_1:9011405-9011424 None:intergenic 35.0%
ACCAAATCAAAAACAGATGG+TGG - chr3_1:9011644-9011663 Msa0347780:intron 35.0%
!!! ACCACCATCTGTTTTTGATT+TGG + chr3_1:9011648-9011667 None:intergenic 35.0%
! AAATCAAAAACAGATGGTGG+TGG - chr3_1:9011647-9011666 Msa0347780:intron 35.0%
ACTGTGAAGAAAGATGAGAA+AGG + chr3_1:9011866-9011885 None:intergenic 35.0%
GAAGTTCTCATTATGCTCAC+TGG + chr3_1:9007578-9007597 None:intergenic 40.0%
GTTACTTCTTACATGCTTGC+TGG - chr3_1:9007610-9007629 Msa0347780:three_prime_UTR 40.0%
GCCAAAGCTTCTCTATAGTT+TGG + chr3_1:9007659-9007678 None:intergenic 40.0%
!! CATTTGATTTGTTGGTCAGG+AGG + chr3_1:9007725-9007744 None:intergenic 40.0%
CTCCTGACCAACAAATCAAA+TGG - chr3_1:9007723-9007742 Msa0347780:three_prime_UTR 40.0%
!! CTCCATTTGATTTGTTGGTC+AGG + chr3_1:9007728-9007747 None:intergenic 40.0%
TGGAGTATATTACATCGGCA+AGG + chr3_1:9007778-9007797 None:intergenic 40.0%
ATGTCGGTGATATATAGGTG+AGG + chr3_1:9007881-9007900 None:intergenic 40.0%
CACACATGTCGGTGATATAT+AGG + chr3_1:9007886-9007905 None:intergenic 40.0%
CTATATATCACCGACATGTG+TGG - chr3_1:9007884-9007903 Msa0347780:three_prime_UTR 40.0%
! GAAGTTACGAGTTCTAATGC+CGG - chr3_1:9008144-9008163 Msa0347780:CDS 40.0%
! GTGACTAGTGTCTAGTTTAC+CGG - chr3_1:9008259-9008278 Msa0347780:intron 40.0%
AATATTGTCTGATGGGAGCT+TGG - chr3_1:9008383-9008402 Msa0347780:CDS 40.0%
! AAGGTACATGGTAAGGTACT+TGG + chr3_1:9008552-9008571 None:intergenic 40.0%
! CATTCTTAGGCTTTTGGTGA+AGG + chr3_1:9009001-9009020 None:intergenic 40.0%
AGTCTGTTTGAGAGAGCTTA+TGG + chr3_1:9009437-9009456 None:intergenic 40.0%
GTGTTAGCACTTTGTTCCAT+TGG + chr3_1:9009536-9009555 None:intergenic 40.0%
!! CACAAACATTGTTTTGCAGG+TGG - chr3_1:9009559-9009578 Msa0347780:CDS 40.0%
GCTCTTGCTTCTTTCATTTG+TGG + chr3_1:9009698-9009717 None:intergenic 40.0%
ACATTTGAGGAGATAGTCTG+TGG + chr3_1:9009735-9009754 None:intergenic 40.0%
! GTGTTGATGTTGCACATTTG+AGG + chr3_1:9009748-9009767 None:intergenic 40.0%
AAATGTGCAACATCAACACC+TGG - chr3_1:9009749-9009768 Msa0347780:CDS 40.0%
TTGGGAAAGACCAGAAGATA+TGG - chr3_1:9009817-9009836 Msa0347780:CDS 40.0%
CTAACAGTGTCCATATCTTC+TGG + chr3_1:9009830-9009849 None:intergenic 40.0%
TTTGTTGAGGACTGCACAAA+AGG - chr3_1:9009967-9009986 Msa0347780:intron 40.0%
! CAGTTTGCTTTGCAGTATCA+AGG - chr3_1:9009995-9010014 Msa0347780:intron 40.0%
CCAATACTCGGATTCTTACT+CGG - chr3_1:9010122-9010141 Msa0347780:intron 40.0%
TAGTATCACTATTAGGGGTC+TGG - chr3_1:9010172-9010191 Msa0347780:intron 40.0%
GGGTCTGGATTATCTAATGT+AGG - chr3_1:9010187-9010206 Msa0347780:intron 40.0%
! TTACACGTAGCAGACAGTTT+TGG - chr3_1:9010222-9010241 Msa0347780:intron 40.0%
! CTGTGTGATACAGTTTTTCG+AGG - chr3_1:9010322-9010341 Msa0347780:intron 40.0%
CTTCAGGATGAACTATTGTG+GGG - chr3_1:9010415-9010434 Msa0347780:intron 40.0%
CTACAATTTGGCCAAGTCTT+TGG - chr3_1:9010477-9010496 Msa0347780:intron 40.0%
ATCAACCTGATATCTTCAGC+TGG - chr3_1:9010509-9010528 Msa0347780:intron 40.0%
TCAACCTGATATCTTCAGCT+GGG - chr3_1:9010510-9010529 Msa0347780:intron 40.0%
TTATCCCAGCTGAAGATATC+AGG + chr3_1:9010517-9010536 None:intergenic 40.0%
AGCTGGGATAACAAATATGC+TGG - chr3_1:9010526-9010545 Msa0347780:intron 40.0%
TTCAACTTACCCTTGAGAGA+AGG + chr3_1:9010561-9010580 None:intergenic 40.0%
GTAGTTGAAGAGGGTGAATT+GGG + chr3_1:9010749-9010768 None:intergenic 40.0%
TGTAGTTGAAGAGGGTGAAT+TGG + chr3_1:9010750-9010769 None:intergenic 40.0%
TGCTTGAATTAATGTGCAGG+GGG - chr3_1:9010960-9010979 Msa0347780:intron 40.0%
ACATACTGAAGATTGCTTGC+AGG + chr3_1:9011002-9011021 None:intergenic 40.0%
AGCTGCCATATACTTGGAAT+AGG + chr3_1:9011051-9011070 None:intergenic 40.0%
CTTTGTAGCTGCCATATACT+TGG + chr3_1:9011057-9011076 None:intergenic 40.0%
AAGCACACATTTAACTGTGG+TGG - chr3_1:9011074-9011093 Msa0347780:intron 40.0%
! GCAACAGTTCTCAAGGTATT+TGG + chr3_1:9011113-9011132 None:intergenic 40.0%
! TCTTTTCGCAACAGTTCTCA+AGG + chr3_1:9011120-9011139 None:intergenic 40.0%
TGGACCATAACCTACCATAT+AGG + chr3_1:9011265-9011284 None:intergenic 40.0%
! ATGGTCCATATTTTCCCAAG+AGG - chr3_1:9011277-9011296 Msa0347780:intron 40.0%
! TGTGGATGAACTGATAGTGA+AGG + chr3_1:9011327-9011346 None:intergenic 40.0%
TCAGTTCATCCACAGACAAT+AGG - chr3_1:9011333-9011352 Msa0347780:intron 40.0%
! ATATTGGTTGGAGCCATAGT+TGG - chr3_1:9011408-9011427 Msa0347780:intron 40.0%
GAACCAGCAACTTACATCAA+TGG - chr3_1:9011486-9011505 Msa0347780:intron 40.0%
CAGCAACTTACATCAATGGT+GGG - chr3_1:9011490-9011509 Msa0347780:intron 40.0%
! TACATCAATGGTGGGATTGT+TGG - chr3_1:9011498-9011517 Msa0347780:intron 40.0%
TCTCATCTCTACCCAACAAA+GGG - chr3_1:9011615-9011634 Msa0347780:intron 40.0%
TTGGTAGACATCCCTTTGTT+GGG + chr3_1:9011629-9011648 None:intergenic 40.0%
TTTGGTAGACATCCCTTTGT+TGG + chr3_1:9011630-9011649 None:intergenic 40.0%
!!! TTTTTTCAAGGCCAGAGGTC+AGG - chr3_1:9007692-9007711 Msa0347780:three_prime_UTR 45.0%
!! TATCACCAGTGTCGACGTAT+TGG - chr3_1:9007953-9007972 Msa0347780:CDS 45.0%
TCTGGTGTCCATGTTTGTGT+CGG - chr3_1:9007991-9008010 Msa0347780:CDS 45.0%
GCTAAACTCCGACACAAACA+TGG + chr3_1:9008002-9008021 None:intergenic 45.0%
!! GTTTTGCAGGTGGATTTGAC+AGG - chr3_1:9009569-9009588 Msa0347780:CDS 45.0%
ACAGGAGGCTATTATGATGC+AGG - chr3_1:9009587-9009606 Msa0347780:CDS 45.0%
ACACCTGGAAGACTCTATGT+TGG - chr3_1:9009764-9009783 Msa0347780:CDS 45.0%
ACACCAACATAGAGTCTTCC+AGG + chr3_1:9009770-9009789 None:intergenic 45.0%
GGAAGACTCTATGTTGGTGT+TGG - chr3_1:9009770-9009789 Msa0347780:CDS 45.0%
GGCTCATACAGTGATTCACT+TGG - chr3_1:9010016-9010035 Msa0347780:intron 45.0%
! CCTAGAGCATCTCCAATACT+CGG - chr3_1:9010110-9010129 Msa0347780:intron 45.0%
CCGAGTAAGAATCCGAGTAT+TGG + chr3_1:9010125-9010144 None:intergenic 45.0%
ATCATCAGCTCCCAAAGACT+TGG + chr3_1:9010491-9010510 None:intergenic 45.0%
TGCACATGTCCTTCTCTCAA+GGG - chr3_1:9010549-9010568 Msa0347780:intron 45.0%
!! CTACAGAGAGCATTGCTGAA+TGG - chr3_1:9010665-9010684 Msa0347780:intron 45.0%
GAGAACTGTTGCGAAAAGAC+AGG - chr3_1:9011121-9011140 Msa0347780:intron 45.0%
AAGGCAATGAAGATCCTCTG+TGG + chr3_1:9011308-9011327 None:intergenic 45.0%
CCATCACATCCTATTGTCTG+TGG + chr3_1:9011345-9011364 None:intergenic 45.0%
CCACAGACAATAGGATGTGA+TGG - chr3_1:9011342-9011361 Msa0347780:intron 45.0%
CAGACAATAGGATGTGATGG+AGG - chr3_1:9011345-9011364 Msa0347780:intron 45.0%
CCACCATTGATGTAAGTTGC+TGG + chr3_1:9011492-9011511 None:intergenic 45.0%
CCAGCAACTTACATCAATGG+TGG - chr3_1:9011489-9011508 Msa0347780:intron 45.0%
TTACCGGCAAAGTACGCTAA+AGG + chr3_1:9011525-9011544 None:intergenic 45.0%
GTCTCATCTCTACCCAACAA+AGG - chr3_1:9011614-9011633 Msa0347780:intron 45.0%
!! AGATGGTGGTGGACTATGAA+GGG - chr3_1:9011658-9011677 Msa0347780:intron 45.0%
!!! ATTTTTATATGATATTTTTT+TGG + chr3_1:9009185-9009204 None:intergenic 5.0%
TCCAATTCTGGCATGTCCGA+TGG - chr3_1:9007749-9007768 Msa0347780:three_prime_UTR 50.0%
ACCATCGGACATGCCAGAAT+TGG + chr3_1:9007753-9007772 None:intergenic 50.0%
TCACCGACATGTGTGGTTTC+TGG - chr3_1:9007891-9007910 Msa0347780:three_prime_UTR 50.0%
GTGCCAGAAACCACACATGT+CGG + chr3_1:9007897-9007916 None:intergenic 50.0%
ACACACCAATACGTCGACAC+TGG + chr3_1:9007961-9007980 None:intergenic 50.0%
! TGGTGTGTCACTGTCGTATC+TGG - chr3_1:9007973-9007992 Msa0347780:CDS 50.0%
! TTGCAGGTGGATTTGACAGG+AGG - chr3_1:9009572-9009591 Msa0347780:CDS 50.0%
TTCGGCAGCAACATCAGAAC+CGG + chr3_1:9009882-9009901 None:intergenic 50.0%
AGCAAGTGCAGCAGCAGTTT+CGG + chr3_1:9009900-9009919 None:intergenic 50.0%
!! CCGAGTATTGGAGATGCTCT+AGG + chr3_1:9010113-9010132 None:intergenic 50.0%
AACTATTGTGGGGAGCTGCA+TGG - chr3_1:9010425-9010444 Msa0347780:intron 50.0%
! GGGAGCTGCATGGCTTTTTA+GGG - chr3_1:9010435-9010454 Msa0347780:intron 50.0%
GTGCACATGTCCTTCTCTCA+AGG - chr3_1:9010548-9010567 Msa0347780:intron 50.0%
CCTCTGTGGTGAATCCTCTT+GGG + chr3_1:9011294-9011313 None:intergenic 50.0%
TCCTCTGTGGTGAATCCTCT+TGG + chr3_1:9011295-9011314 None:intergenic 50.0%
TTGGTTGGAGCCATAGTTGG+AGG - chr3_1:9011411-9011430 Msa0347780:intron 50.0%
!! CTGGTTTGGACCTCCAACTA+TGG + chr3_1:9011424-9011443 None:intergenic 50.0%
! GGAAATCCGTCGTTCTGGTT+TGG + chr3_1:9011438-9011457 None:intergenic 50.0%
CATCAGGAAATCCGTCGTTC+TGG + chr3_1:9011443-9011462 None:intergenic 50.0%
! GACGGATTTCCTGATGATCG+CGG - chr3_1:9011447-9011466 Msa0347780:intron 50.0%
CTATAGTCACCGCGATCATC+AGG + chr3_1:9011459-9011478 None:intergenic 50.0%
GGACCTTTAGCGTACTTTGC+CGG - chr3_1:9011519-9011538 Msa0347780:intron 50.0%
!! CAGATGGTGGTGGACTATGA+AGG - chr3_1:9011657-9011676 Msa0347780:intron 50.0%
TACATCGGCAAGGCGACCAT+CGG + chr3_1:9007768-9007787 None:intergenic 55.0%
TCGTCAGGTGGAGTCCGAAA+AGG + chr3_1:9008215-9008234 None:intergenic 55.0%
TGAGGAGATAGTCTGTGGCG+TGG + chr3_1:9009730-9009749 None:intergenic 55.0%
TCGGCAGCAACATCAGAACC+GGG + chr3_1:9009881-9009900 None:intergenic 55.0%
! AACTGCTGCTGCACTTGCTG+CGG - chr3_1:9009901-9009920 Msa0347780:CDS 55.0%
! GGGGAGCTGCATGGCTTTTT+AGG - chr3_1:9010434-9010453 Msa0347780:intron 55.0%
CCCAAGAGGATTCACCACAG+AGG - chr3_1:9011291-9011310 Msa0347780:intron 55.0%
GGAGGTCCAAACCAGAACGA+CGG - chr3_1:9011429-9011448 Msa0347780:intron 55.0%
GAGGGAGTCTTCCTGACCTC+TGG + chr3_1:9007706-9007725 None:intergenic 60.0%
GTCTGTGGCGTGGCGAATTG+CGG + chr3_1:9009720-9009739 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 9007550 9011948 9007550 ID=Msa0347780;Name=Msa0347780
chr3_1 mRNA 9007550 9011948 9007550 ID=Msa0347780-mRNA-1;Parent=Msa0347780;Name=Msa0347780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=37|1|1|1|1|1|6|397|484
chr3_1 exon 9007550 9008273 9007550 ID=Msa0347780-mRNA-1:exon:2650;Parent=Msa0347780-mRNA-1
chr3_1 exon 9008356 9008519 9008356 ID=Msa0347780-mRNA-1:exon:2649;Parent=Msa0347780-mRNA-1
chr3_1 exon 9008716 9008827 9008716 ID=Msa0347780-mRNA-1:exon:2648;Parent=Msa0347780-mRNA-1
chr3_1 exon 9008928 9009077 9008928 ID=Msa0347780-mRNA-1:exon:2647;Parent=Msa0347780-mRNA-1
chr3_1 exon 9009417 9009920 9009417 ID=Msa0347780-mRNA-1:exon:2646;Parent=Msa0347780-mRNA-1
chr3_1 exon 9011714 9011948 9011714 ID=Msa0347780-mRNA-1:exon:2645;Parent=Msa0347780-mRNA-1
chr3_1 five_prime_UTR 9011912 9011948 9011912 ID=Msa0347780-mRNA-1:five_prime_utr;Parent=Msa0347780-mRNA-1
chr3_1 CDS 9011714 9011911 9011714 ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1 CDS 9009417 9009920 9009417 ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1 CDS 9008928 9009077 9008928 ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1 CDS 9008716 9008827 9008716 ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1 CDS 9008356 9008519 9008356 ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1 CDS 9007947 9008273 9007947 ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1 three_prime_UTR 9007550 9007946 9007550 ID=Msa0347780-mRNA-1:three_prime_utr;Parent=Msa0347780-mRNA-1
Gene Sequence

>Msa0347780

ATGAGAACTTCTTTGTTTTTCTTGTTACTTCTTACATGCTTGCTGGTTGTTGAAAATGTCCAATGCAAACCAAACTATAGAGAAGCTTTGGCTAAATCCTTATTGTTTTTTCAAGGCCAGAGGTCAGGAAGACTCCCTCCTGACCAACAAATCAAATGGAGATCCAATTCTGGCATGTCCGATGGTCGCCTTGCCGATGTGGATTTGACAGGAGGCTATTATGATGCAGGAGACAATGTGAAATTCAATTTTCCAATGGCATTCACAACAACAATGTTATCATGGAGCACAATTGAATATGGAAAGAGAATGGGACCACAAATGAAAGAAGCAAGAGCCGCAATTCGCCACGCCACAGACTATCTCCTCAAATGTGCAACATCAACACCTGGAAGACTCTATGTTGGTGTTGGAGATCCAAATGTTGATCACAAGTGTTGGGAAAGACCAGAAGATATGGACACTGTTAGAACTGTTTATTATGTATCTTCAAACAATCCCGGTTCTGATGTTGCTGCCGAAACTGCTGCTGCACTTGCTGCGGCGTCTATTGTTTTTAGAAAAGTTGATCCAACTTATTCTAAACTTTTGTTGAGGACTGCACAAAAGGTTTATCAGTTTGCTTTGCAGTATCAAGGCTCATACAGTGATTCACTTGGTTCTGCTGTTTGTCCATTTTATTGCTCATATTCTGGATTCAAGGATGAACTATTGTGGGGAGCTGCATGGCTTTTTAGGGCAACAAATGCTGTTAAATACTACAATTTGGCCAAGTCTTTGGGAGCTGATGATCAACCTGATATCTTCAGCTGGGATAACAAATATGCTGGTGCACATGTCCTTCTCTCAAGGAGAGCATTGCTGAATGGTGATAAGAACTTTGATCAGTATAGGCAAGAAGCTGATGATTTCATGTGCAAGATCTTGCCCAATTCACCCTCTTCAACTACACAGTATACACAAGGGGGACTAATGTTCAAGTTACCTGCAAGCAATCTTCAGTATGTGACATCTATAACATTCTTACTTACAACCTATTCCAAGTATATGGCAGCTACAAAGCACACATTTAACTGTGGTGGCGTCTTTGTCACTCCAAATACCTTGAGAACTGTTGCGAAAAGACAGGTAGACTATATATTAGGTGAAAATCCACTTAGAATGTCCTATATGGTAGGTTATGGTCCATATTTTCCCAAGAGGATTCACCACAGAGGATCTTCATTGCCTTCACTATCAGTTCATCCACAGACAATAGGATGTGATGGAGGTTTCAATCCGTTTTTCCATTCAATGAATCAGAACCCTAATATATTGGTTGGAGCCATAGTTGGAGGTCCAAACCAGAACGACGGATTTCCTGATGATCGCGGTGACTATAGTCATTCAGAACCAGCAACTTACATCAATGGTGGGATTGTTGGACCTTTAGCGTACTTTGCCGGTAACAATTAA

Protein sequence

>Msa0347780

MRTSLFFLLLLTCLLVVENVQCKPNYREALAKSLLFFQGQRSGRLPPDQQIKWRSNSGMSDGRLADVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSTIEYGKRMGPQMKEARAAIRHATDYLLKCATSTPGRLYVGVGDPNVDHKCWERPEDMDTVRTVYYVSSNNPGSDVAAETAAALAAASIVFRKVDPTYSKLLLRTAQKVYQFALQYQGSYSDSLGSAVCPFYCSYSGFKDELLWGAAWLFRATNAVKYYNLAKSLGADDQPDIFSWDNKYAGAHVLLSRRALLNGDKNFDQYRQEADDFMCKILPNSPSSTTQYTQGGLMFKLPASNLQYVTSITFLLTTYSKYMAATKHTFNCGGVFVTPNTLRTVAKRQVDYILGENPLRMSYMVGYGPYFPKRIHHRGSSLPSLSVHPQTIGCDGGFNPFFHSMNQNPNILVGAIVGGPNQNDGFPDDRGDYSHSEPATYINGGIVGPLAYFAGNN*