AlfalfaGEDB | Msa0347780

M. sativa cultivar zhongmu-4 / Msa0347780

KEGG: K01179
GO: GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944
PFAM: PF00759.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347780	XP_003598326.1	98.760	484	6	0	1	484	1	484	0.0	1001

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347780	sp\|Q9C9H5\|GUN9_ARATH	74.583	480	121	1	3	482	2	480	0.0	740

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347780	G7IVD9	98.760	484	6	0	1	484	1	484	0.0	1001

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0173380	Msa0347780	0.804533	2.063782e-49	-8.615850e-47
Msa0221180	Msa0347780	0.805624	1.219907e-49	-8.615850e-47
Msa0262750	Msa0347780	0.814002	1.922615e-51	-8.615850e-47
Msa0264230	Msa0347780	0.813482	2.502742e-51	-8.615850e-47
Msa0284800	Msa0347780	0.806400	8.379383e-50	-8.615850e-47
Msa0300470	Msa0347780	0.839657	1.389720e-57	-8.615850e-47
Msa0336460	Msa0347780	0.800656	1.300874e-48	-8.615850e-47
Msa0337970	Msa0347780	0.826374	2.809610e-54	-8.615850e-47
Msa0347780	Msa0359010	0.808859	2.517915e-50	-8.615850e-47
Msa0347780	Msa0384870	0.806028	1.003419e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347780	MtrunA17_Chr3g0080171	98.760	484	6	0	1	484	1	484	0.0	1001
Msa0347780	MtrunA17_Chr3g0119821	58.874	462	185	2	25	482	35	495	0.0	553
Msa0347780	MtrunA17_Chr1g0195271	59.870	461	179	3	25	481	39	497	0.0	550
Msa0347780	MtrunA17_Chr3g0145261	57.296	466	190	5	25	483	24	487	0.0	534
Msa0347780	MtrunA17_Chr8g0391391	55.914	465	198	5	25	483	30	493	0.0	520
Msa0347780	MtrunA17_Chr4g0018301	53.947	456	207	3	25	480	45	497	7.09e-173	495
Msa0347780	MtrunA17_Chr4g0018361	53.183	487	210	9	8	480	7	489	1.57e-171	492
Msa0347780	MtrunA17_Chr5g0397201	49.156	474	230	6	15	484	30	496	1.37e-156	454
Msa0347780	MtrunA17_Chr8g0388051	47.881	472	230	8	25	484	28	495	2.05e-143	425
Msa0347780	MtrunA17_Chr3g0119371	45.492	488	248	8	5	480	24	505	1.16e-142	419

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0347780	AT1G71380.1	74.583	480	121	1	3	482	2	480	0.0	740
Msa0347780	AT1G22880.1	73.292	483	127	2	1	483	1	481	0.0	715
Msa0347780	AT1G22880.2	73.618	398	104	1	86	483	1	397	0.0	607
Msa0347780	AT4G02290.1	61.555	463	172	3	23	481	50	510	0.0	577
Msa0347780	AT1G02800.1	61.822	461	168	4	25	481	43	499	0.0	569
Msa0347780	AT1G70710.1	56.033	489	207	5	2	484	3	489	0.0	549
Msa0347780	AT1G23210.1	55.208	480	209	3	8	483	11	488	0.0	536
Msa0347780	AT4G39010.1	54.077	466	206	4	25	483	29	493	1.52e-179	513
Msa0347780	AT1G22880.3	75.617	324	78	1	1	324	1	323	3.10e-170	483
Msa0347780	AT4G02290.2	61.000	400	150	3	86	481	1	398	6.39e-170	484

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Find 129 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGCAACATCAACACC+TGG	0.628895	3_1:-9009727	Msa0347780:CDS
AAATGTTGATCACAAGTGTT+GGG	0.476909	3_1:-9009677	Msa0347780:CDS
AACAAAAGTTTAGAATAAGT+TGG	0.454125	3_1:+9009526	None:intergenic
AACTATTGTGGGGAGCTGCA+TGG	0.591973	3_1:-9009051	Msa0347780:CDS
AACTGCTGCTGCACTTGCTG+CGG	0.541749	3_1:-9009575	Msa0347780:CDS
AAGCACACATTTAACTGTGG+TGG	0.619659	3_1:-9008402	Msa0347780:CDS
AAGGCAATGAAGATCCTCTG+TGG	0.790898	3_1:+9008171	None:intergenic
AATAAAGACGAATGCAAAGA+TGG	0.498098	3_1:+9007642	None:intergenic
AATCTAACATTAATTGTTAC+CGG	0.359003	3_1:+9007938	None:intergenic
AATTGAATATGGAAAGAGAA+TGG	0.462216	3_1:-9009806	Msa0347780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTCCGAAAAGGATATATAT+AGG	+	chr3_1:9008204-9008223	None:intergenic	30.0%
ATTGTCTATTGTGGTTGAAT+CGG	-	chr3_1:9008304-9008323	Msa0347780:intron	30.0%
AAATTATAGAATGGCGTGTT+TGG	+	chr3_1:9009501-9009520	None:intergenic	30.0%
ATTTCACTTGCATTATCCAA+TGG	-	chr3_1:9009517-9009536	Msa0347780:CDS	30.0%
TCACAACAACAATGTTATCA+TGG	-	chr3_1:9009642-9009661	Msa0347780:CDS	30.0%
AAATGTTGATCACAAGTGTT+GGG	-	chr3_1:9009799-9009818	Msa0347780:CDS	30.0%
TATGTATCTTCAAACAATCC+CGG	-	chr3_1:9009860-9009879	Msa0347780:CDS	30.0%
CCAGAATATGAGCAATAAAA+TGG	+	chr3_1:9010055-9010074	None:intergenic	30.0%
TCTACTTGTATCGTTCTAAT+AGG	-	chr3_1:9010382-9010401	Msa0347780:intron	30.0%
TATTGCTTGAATTAATGTGC+AGG	-	chr3_1:9010957-9010976	Msa0347780:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	9007550	9011948	9007550	ID=Msa0347780;Name=Msa0347780
chr3_1	mRNA	9007550	9011948	9007550	ID=Msa0347780-mRNA-1;Parent=Msa0347780;Name=Msa0347780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=37\|1\|1\|1\|1\|1\|6\|397\|484
chr3_1	exon	9007550	9008273	9007550	ID=Msa0347780-mRNA-1:exon:2650;Parent=Msa0347780-mRNA-1
chr3_1	exon	9008356	9008519	9008356	ID=Msa0347780-mRNA-1:exon:2649;Parent=Msa0347780-mRNA-1
chr3_1	exon	9008716	9008827	9008716	ID=Msa0347780-mRNA-1:exon:2648;Parent=Msa0347780-mRNA-1
chr3_1	exon	9008928	9009077	9008928	ID=Msa0347780-mRNA-1:exon:2647;Parent=Msa0347780-mRNA-1
chr3_1	exon	9009417	9009920	9009417	ID=Msa0347780-mRNA-1:exon:2646;Parent=Msa0347780-mRNA-1
chr3_1	exon	9011714	9011948	9011714	ID=Msa0347780-mRNA-1:exon:2645;Parent=Msa0347780-mRNA-1
chr3_1	five_prime_UTR	9011912	9011948	9011912	ID=Msa0347780-mRNA-1:five_prime_utr;Parent=Msa0347780-mRNA-1
chr3_1	CDS	9011714	9011911	9011714	ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1	CDS	9009417	9009920	9009417	ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1	CDS	9008928	9009077	9008928	ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1	CDS	9008716	9008827	9008716	ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1	CDS	9008356	9008519	9008356	ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1	CDS	9007947	9008273	9007947	ID=Msa0347780-mRNA-1:cds;Parent=Msa0347780-mRNA-1
chr3_1	three_prime_UTR	9007550	9007946	9007550	ID=Msa0347780-mRNA-1:three_prime_utr;Parent=Msa0347780-mRNA-1

Gene Sequence

>Msa0347780

ATGAGAACTTCTTTGTTTTTCTTGTTACTTCTTACATGCTTGCTGGTTGTTGAAAATGTCCAATGCAAACCAAACTATAGAGAAGCTTTGGCTAAATCCTTATTGTTTTTTCAAGGCCAGAGGTCAGGAAGACTCCCTCCTGACCAACAAATCAAATGGAGATCCAATTCTGGCATGTCCGATGGTCGCCTTGCCGATGTGGATTTGACAGGAGGCTATTATGATGCAGGAGACAATGTGAAATTCAATTTTCCAATGGCATTCACAACAACAATGTTATCATGGAGCACAATTGAATATGGAAAGAGAATGGGACCACAAATGAAAGAAGCAAGAGCCGCAATTCGCCACGCCACAGACTATCTCCTCAAATGTGCAACATCAACACCTGGAAGACTCTATGTTGGTGTTGGAGATCCAAATGTTGATCACAAGTGTTGGGAAAGACCAGAAGATATGGACACTGTTAGAACTGTTTATTATGTATCTTCAAACAATCCCGGTTCTGATGTTGCTGCCGAAACTGCTGCTGCACTTGCTGCGGCGTCTATTGTTTTTAGAAAAGTTGATCCAACTTATTCTAAACTTTTGTTGAGGACTGCACAAAAGGTTTATCAGTTTGCTTTGCAGTATCAAGGCTCATACAGTGATTCACTTGGTTCTGCTGTTTGTCCATTTTATTGCTCATATTCTGGATTCAAGGATGAACTATTGTGGGGAGCTGCATGGCTTTTTAGGGCAACAAATGCTGTTAAATACTACAATTTGGCCAAGTCTTTGGGAGCTGATGATCAACCTGATATCTTCAGCTGGGATAACAAATATGCTGGTGCACATGTCCTTCTCTCAAGGAGAGCATTGCTGAATGGTGATAAGAACTTTGATCAGTATAGGCAAGAAGCTGATGATTTCATGTGCAAGATCTTGCCCAATTCACCCTCTTCAACTACACAGTATACACAAGGGGGACTAATGTTCAAGTTACCTGCAAGCAATCTTCAGTATGTGACATCTATAACATTCTTACTTACAACCTATTCCAAGTATATGGCAGCTACAAAGCACACATTTAACTGTGGTGGCGTCTTTGTCACTCCAAATACCTTGAGAACTGTTGCGAAAAGACAGGTAGACTATATATTAGGTGAAAATCCACTTAGAATGTCCTATATGGTAGGTTATGGTCCATATTTTCCCAAGAGGATTCACCACAGAGGATCTTCATTGCCTTCACTATCAGTTCATCCACAGACAATAGGATGTGATGGAGGTTTCAATCCGTTTTTCCATTCAATGAATCAGAACCCTAATATATTGGTTGGAGCCATAGTTGGAGGTCCAAACCAGAACGACGGATTTCCTGATGATCGCGGTGACTATAGTCATTCAGAACCAGCAACTTACATCAATGGTGGGATTGTTGGACCTTTAGCGTACTTTGCCGGTAACAATTAA

Protein sequence

>Msa0347780

MRTSLFFLLLLTCLLVVENVQCKPNYREALAKSLLFFQGQRSGRLPPDQQIKWRSNSGMSDGRLADVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSTIEYGKRMGPQMKEARAAIRHATDYLLKCATSTPGRLYVGVGDPNVDHKCWERPEDMDTVRTVYYVSSNNPGSDVAAETAAALAAASIVFRKVDPTYSKLLLRTAQKVYQFALQYQGSYSDSLGSAVCPFYCSYSGFKDELLWGAAWLFRATNAVKYYNLAKSLGADDQPDIFSWDNKYAGAHVLLSRRALLNGDKNFDQYRQEADDFMCKILPNSPSSTTQYTQGGLMFKLPASNLQYVTSITFLLTTYSKYMAATKHTFNCGGVFVTPNTLRTVAKRQVDYILGENPLRMSYMVGYGPYFPKRIHHRGSSLPSLSVHPQTIGCDGGFNPFFHSMNQNPNILVGAIVGGPNQNDGFPDDRGDYSHSEPATYINGGIVGPLAYFAGNN*