Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489880 | KEH33239.1 | 79.518 | 166 | 23 | 2 | 1 | 166 | 1 | 155 | 2.55e-85 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489880 | sp|Q9FKI4|NAA10_ARATH | 44.444 | 162 | 71 | 6 | 13 | 163 | 2 | 155 | 1.08e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489880 | A0A072UTR7 | 79.518 | 166 | 23 | 2 | 1 | 166 | 1 | 155 | 1.22e-85 | 257 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0489880 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0441980 | Msa0489880 | 0.804372 | 2.229148e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489880 | MtrunA17_Chr3g0088851 | 79.048 | 105 | 14 | 1 | 8 | 112 | 1 | 97 | 9.95e-55 | 169 |
| Msa0489880 | MtrunA17_Chr3g0090311 | 47.239 | 163 | 67 | 6 | 13 | 164 | 2 | 156 | 1.70e-32 | 114 |
| Msa0489880 | MtrunA17_Chr3g0098461 | 41.463 | 123 | 63 | 4 | 44 | 164 | 37 | 152 | 1.41e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489880 | AT5G13780.1 | 44.444 | 162 | 71 | 6 | 13 | 163 | 2 | 155 | 1.10e-28 | 105 |
Find 57 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCACGATCTGCCAATATT+CGG | 0.311860 | 3_4:-10680765 | None:intergenic |
| TGTTCCTTGTAACTGTTTCA+TGG | 0.332180 | 3_4:-10680658 | None:intergenic |
| ATGCATACTTCAAAATATTA+AGG | 0.338549 | 3_4:-10683210 | None:intergenic |
| TCCACGATCTGCCAATATTC+GGG | 0.342849 | 3_4:-10680764 | None:intergenic |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3_4:-10681670 | None:intergenic |
| AATCCTTAACACCTAATCTA+TGG | 0.347939 | 3_4:-10683074 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_4:+10681691 | Msa0489880:CDS |
| GTTATATCAAATTGTTCATA+AGG | 0.378902 | 3_4:-10683052 | None:intergenic |
| AGAGGAAGTGGAAGAGGAAG+AGG | 0.396334 | 3_4:+10680848 | Msa0489880:CDS |
| CTCGTTACTCTCCCGAATAT+TGG | 0.398957 | 3_4:+10680753 | Msa0489880:CDS |
| CTGAGTAATGAGAGGAAATA+TGG | 0.402178 | 3_4:+10683247 | Msa0489880:three_prime_UTR |
| TAACCATAGATTAGGTGTTA+AGG | 0.408808 | 3_4:+10683071 | Msa0489880:three_prime_UTR |
| AGTGGAAGAGGAAGAGGAAG+AGG | 0.420722 | 3_4:+10680854 | Msa0489880:CDS |
| AACAATACAGCCGCTGCAAT+CGG | 0.422612 | 3_4:-10680808 | None:intergenic |
| ATTTGATATAACCATAGATT+AGG | 0.426119 | 3_4:+10683063 | Msa0489880:three_prime_UTR |
| AGAGGAAGAGGAAGAGGAAG+AGG | 0.426997 | 3_4:+10680860 | Msa0489880:CDS |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_4:-10681738 | None:intergenic |
| TGCATAAGAGTCGCAACAAT+TGG | 0.433948 | 3_4:+10680699 | Msa0489880:CDS |
| CTCTAAAGAGGAAGTGGAAG+AGG | 0.438354 | 3_4:+10680842 | Msa0489880:CDS |
| GAAGAGGAAGAGGAAGAGGA+AGG | 0.438355 | 3_4:+10680864 | Msa0489880:CDS |
| CTCAATTATCACAGATTCAC+AGG | 0.439603 | 3_4:-10683284 | None:intergenic |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_4:+10680968 | Msa0489880:CDS |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_4:+10681692 | Msa0489880:CDS |
| CCTCCTCTCTAAAGAGGAAG+TGG | 0.459131 | 3_4:+10680836 | Msa0489880:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_4:+10681674 | Msa0489880:CDS |
| TGCTTACCTCCTCTCTAAAG+AGG | 0.467882 | 3_4:+10680830 | Msa0489880:CDS |
| CAATTGGAGAAGTATTAGAT+TGG | 0.473450 | 3_4:+10680715 | Msa0489880:CDS |
| AAGATGTCTCGGTGCACGTC+CGG | 0.505757 | 3_4:+10681651 | Msa0489880:CDS |
| CTTCCACTTCCTCTTTAGAG+AGG | 0.515368 | 3_4:-10680839 | None:intergenic |
| GAAGAGGAAGAGGAAGGGAA+TGG | 0.522153 | 3_4:+10680870 | Msa0489880:CDS |
| AAGAGGAAGAGGAAGAGGAA+GGG | 0.522871 | 3_4:+10680865 | Msa0489880:CDS |
| CCACTTCCTCTTTAGAGAGG+AGG | 0.536526 | 3_4:-10680836 | None:intergenic |
| GAGTGGCTCTCACAGTTAGG+TGG | 0.542114 | 3_4:-10681804 | None:intergenic |
| GATTTAACATGTAGTACTGT+GGG | 0.544885 | 3_4:+10683093 | Msa0489880:three_prime_UTR |
| TTAATTTCAGGTCTCAAACA+TGG | 0.547864 | 3_4:+10682832 | Msa0489880:intron |
| AACATGGATTCTCATGCGGC+AGG | 0.550095 | 3_4:+10682848 | Msa0489880:three_prime_UTR |
| AGGAACAATGTCGTCAAAGA+AGG | 0.558119 | 3_4:+10680674 | Msa0489880:CDS |
| CACGTCGCGGCCGATTGCAG+CGG | 0.560201 | 3_4:+10680798 | Msa0489880:CDS |
| TTACACACTTCTTGAGGTGA+AGG | 0.565558 | 3_4:+10681715 | Msa0489880:CDS |
| ATAGGTATGGTGAACAAAGA+GGG | 0.575631 | 3_4:-10680910 | None:intergenic |
| GATGGGTTACACACTTCTTG+AGG | 0.581446 | 3_4:+10681709 | Msa0489880:CDS |
| AGGAGGACGCTATTGTCTTG+TGG | 0.587701 | 3_4:+10681756 | Msa0489880:CDS |
| TCCCGAATATTGGCAGATCG+TGG | 0.596909 | 3_4:+10680763 | Msa0489880:CDS |
| CTAACCATGAAACAGTTACA+AGG | 0.600808 | 3_4:+10680654 | None:intergenic |
| ATGGATTCTCATGCGGCAGG+AGG | 0.606412 | 3_4:+10682851 | Msa0489880:three_prime_UTR |
| GATAGGTATGGTGAACAAAG+AGG | 0.607709 | 3_4:-10680911 | None:intergenic |
| GGATTTAACATGTAGTACTG+TGG | 0.615437 | 3_4:+10683092 | Msa0489880:three_prime_UTR |
| CATGGTAAATCGTTAGCTGA+AGG | 0.616527 | 3_4:-10682878 | None:intergenic |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_4:+10680962 | Msa0489880:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.628725 | 3_4:+10680921 | Msa0489880:CDS |
| GGTGGGTGCTAAAGATGTCT+CGG | 0.629911 | 3_4:+10681640 | Msa0489880:intron |
| TGAATCTGTGATAATTGAGA+AGG | 0.632046 | 3_4:+10683288 | Msa0489880:three_prime_UTR |
| AAAATATACAAAGTACTACA+TGG | 0.635553 | 3_4:-10682896 | None:intergenic |
| CTCAAACATGGATTCTCATG+CGG | 0.636062 | 3_4:+10682844 | Msa0489880:three_prime_UTR |
| AGTGAGTGCTGAGTAATGAG+AGG | 0.650346 | 3_4:+10683239 | Msa0489880:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_4:-10680923 | None:intergenic |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_4:-10680928 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTATAATTTTGTTTTT+TGG | + | chr3_4:10681009-10681028 | Msa0489880:intron | 15.0% |
| !!! | TATAATTTTGTTTTTTGGAT+TGG | + | chr3_4:10681014-10681033 | Msa0489880:intron | 15.0% |
| !!! | ATAATTTTGTTTTTTGGATT+GGG | + | chr3_4:10681015-10681034 | Msa0489880:intron | 15.0% |
| !! | GAAAATAATTGAAACTTTGA+TGG | + | chr3_4:10681860-10681879 | Msa0489880:intron | 20.0% |
| !!! | TTGATAGTCAATAATACTTA+GGG | + | chr3_4:10681963-10681982 | Msa0489880:intron | 20.0% |
| !!! | AAAATATACAAAGTACTACA+TGG | - | chr3_4:10682899-10682918 | None:intergenic | 20.0% |
| !!! | ACTTTGTATATTTTCTAGTA+TGG | + | chr3_4:10682905-10682924 | Msa0489880:intron | 20.0% |
| !!! | ACTTTGTATATTTTCTAGTA+TGG | + | chr3_4:10682905-10682924 | Msa0489880:intron | 20.0% |
| !!! | AAAAATTATCAAAGTACTTG+CGG | - | chr3_4:10683022-10683041 | None:intergenic | 20.0% |
| !! | GTTATATCAAATTGTTCATA+AGG | - | chr3_4:10683055-10683074 | None:intergenic | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | + | chr3_4:10683063-10683082 | Msa0489880:three_prime_UTR | 20.0% |
| !! | ATGCATACTTCAAAATATTA+AGG | - | chr3_4:10683213-10683232 | None:intergenic | 20.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | + | chr3_4:10681389-10681408 | Msa0489880:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | - | chr3_4:10681472-10681491 | None:intergenic | 25.0% |
| !!! | AGACCTTTTTTTGATGTTTT+TGG | + | chr3_4:10681561-10681580 | Msa0489880:intron | 25.0% |
| ! | CAACCAAAAACATCAAAAAA+AGG | - | chr3_4:10681567-10681586 | None:intergenic | 25.0% |
| ! | ACATTGTAACAGACTATTAA+TGG | - | chr3_4:10681606-10681625 | None:intergenic | 25.0% |
| ! | TCAAGAAAATGGAAAAAGAT+GGG | - | chr3_4:10681831-10681850 | None:intergenic | 25.0% |
| ! | TTCAAGAAAATGGAAAAAGA+TGG | - | chr3_4:10681832-10681851 | None:intergenic | 25.0% |
| ! | TCACAAAACATTCAAGAAAA+TGG | - | chr3_4:10681842-10681861 | None:intergenic | 25.0% |
| !! | CTTGATAGTCAATAATACTT+AGG | + | chr3_4:10681962-10681981 | Msa0489880:intron | 25.0% |
| !!! | TACTAGTACTTTTTAGATAG+TGG | + | chr3_4:10682311-10682330 | Msa0489880:intron | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | - | chr3_4:10682364-10682383 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | + | chr3_4:10682581-10682600 | Msa0489880:intron | 25.0% |
| ! | GAAAATATGCAAGTAGTAAA+AGG | - | chr3_4:10682719-10682738 | None:intergenic | 25.0% |
| ! | TAATCGCAATTCATTAAACA+AGG | - | chr3_4:10682744-10682763 | None:intergenic | 25.0% |
| !! | AATTAAATCATGGTGTTTTC+TGG | + | chr3_4:10682807-10682826 | Msa0489880:intron | 25.0% |
| !!! | TGTTTTCTGGATTTAATTTC+AGG | + | chr3_4:10682820-10682839 | Msa0489880:intron | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | + | chr3_4:10682921-10682940 | Msa0489880:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | + | chr3_4:10682922-10682941 | Msa0489880:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | + | chr3_4:10682923-10682942 | Msa0489880:intron | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | + | chr3_4:10682921-10682940 | Msa0489880:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | + | chr3_4:10682922-10682941 | Msa0489880:intron | 25.0% |
| !!! | AGTTTGGTATCTTTTAAAGT+AGG | + | chr3_4:10683125-10683144 | Msa0489880:three_prime_UTR | 25.0% |
| !!! | GTTTGGTATCTTTTAAAGTA+GGG | + | chr3_4:10683126-10683145 | Msa0489880:three_prime_UTR | 25.0% |
| !! | CAATTGGAGAAGTATTAGAT+TGG | + | chr3_4:10680715-10680734 | Msa0489880:CDS | 30.0% |
| TCCATACATAACCAGTTAAA+AGG | - | chr3_4:10681080-10681099 | None:intergenic | 30.0% | |
| ! | TATGTATGGAGTTGGTTTAA+TGG | + | chr3_4:10681090-10681109 | Msa0489880:intron | 30.0% |
| AGAAAACAGAAAATCATCAC+AGG | - | chr3_4:10681218-10681237 | None:intergenic | 30.0% | |
| ! | TGTGATGATTTTCTGTTTTC+TGG | + | chr3_4:10681217-10681236 | Msa0489880:intron | 30.0% |
| ! | CTAGGATTATCTTTTATTCC+TGG | + | chr3_4:10681261-10681280 | Msa0489880:intron | 30.0% |
| ! | TTATCTTTTATTCCTGGAAG+TGG | + | chr3_4:10681267-10681286 | Msa0489880:intron | 30.0% |
| !! | TTTTCTTGTTTCCTAGTCTT+GGG | + | chr3_4:10681487-10681506 | Msa0489880:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | + | chr3_4:10681619-10681638 | Msa0489880:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | + | chr3_4:10681691-10681710 | Msa0489880:CDS | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | + | chr3_4:10681692-10681711 | Msa0489880:CDS | 30.0% |
| AAGAAAATGGAAAAAGATGG+GGG | - | chr3_4:10681829-10681848 | None:intergenic | 30.0% | |
| CAAGAAAATGGAAAAAGATG+GGG | - | chr3_4:10681830-10681849 | None:intergenic | 30.0% | |
| ! | ATAATTGAAACTTTGATGGC+TGG | + | chr3_4:10681864-10681883 | Msa0489880:intron | 30.0% |
| CTGGTTTAATATTGACATGA+TGG | + | chr3_4:10681883-10681902 | Msa0489880:intron | 30.0% | |
| ! | TTTTGATCGCTATCTTTTTG+TGG | + | chr3_4:10682000-10682019 | Msa0489880:intron | 30.0% |
| TTATCCAAGGATGAAAAAGT+CGG | - | chr3_4:10682048-10682067 | None:intergenic | 30.0% | |
| TGTAAAGTGCATATTATCCA+AGG | - | chr3_4:10682061-10682080 | None:intergenic | 30.0% | |
| TGGATAATATGCACTTTACA+TGG | + | chr3_4:10682061-10682080 | Msa0489880:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | + | chr3_4:10682174-10682193 | Msa0489880:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | + | chr3_4:10682175-10682194 | Msa0489880:intron | 30.0% |
| !! | TGTTGCTTATTGATTTCGAA+TGG | + | chr3_4:10682263-10682282 | Msa0489880:intron | 30.0% |
| !! | TTTGTCTTTTTCACAGATCT+AGG | + | chr3_4:10682412-10682431 | Msa0489880:intron | 30.0% |
| TTAATCCTTTCAGCTTTCTT+CGG | + | chr3_4:10682486-10682505 | Msa0489880:intron | 30.0% | |
| GCTTATTGAGGATTAAGATT+AGG | + | chr3_4:10682627-10682646 | Msa0489880:intron | 30.0% | |
| ATTGAGGATTAAGATTAGGT+TGG | + | chr3_4:10682631-10682650 | Msa0489880:intron | 30.0% | |
| TTGAGGATTAAGATTAGGTT+GGG | + | chr3_4:10682632-10682651 | Msa0489880:intron | 30.0% | |
| TGCTGATGTCAATTAAATCA+TGG | + | chr3_4:10682797-10682816 | Msa0489880:intron | 30.0% | |
| ! | TTAATTTCAGGTCTCAAACA+TGG | + | chr3_4:10682832-10682851 | Msa0489880:intron | 30.0% |
| ! | CCAAAATATCAAAGTACTTG+TGG | - | chr3_4:10682952-10682971 | None:intergenic | 30.0% |
| ! | CCACAAGTACTTTGATATTT+TGG | + | chr3_4:10682949-10682968 | Msa0489880:intron | 30.0% |
| TAACCATAGATTAGGTGTTA+AGG | + | chr3_4:10683071-10683090 | Msa0489880:three_prime_UTR | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | - | chr3_4:10683077-10683096 | None:intergenic | 30.0% | |
| GATTTAACATGTAGTACTGT+GGG | + | chr3_4:10683093-10683112 | Msa0489880:three_prime_UTR | 30.0% | |
| ATAGGTATGGTGAACAAAGA+GGG | - | chr3_4:10680913-10680932 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+GGG | - | chr3_4:10680973-10680992 | None:intergenic | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | - | chr3_4:10680974-10680993 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | + | chr3_4:10680973-10680992 | Msa0489880:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | - | chr3_4:10680982-10681001 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | + | chr3_4:10681076-10681095 | Msa0489880:intron | 35.0% |
| TAACTGGTTATGTATGGAGT+TGG | + | chr3_4:10681082-10681101 | Msa0489880:intron | 35.0% | |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | + | chr3_4:10681095-10681114 | Msa0489880:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | + | chr3_4:10681107-10681126 | Msa0489880:intron | 35.0% | |
| AACAAAAAACCTAGCCTACT+CGG | - | chr3_4:10681161-10681180 | None:intergenic | 35.0% | |
| ! | TTTTCAGATAGATCACACAG+TGG | - | chr3_4:10681195-10681214 | None:intergenic | 35.0% |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | + | chr3_4:10681392-10681411 | Msa0489880:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | + | chr3_4:10681396-10681415 | Msa0489880:intron | 35.0% |
| !! | TTTGTGTAGTTAGTCTTGTC+TGG | + | chr3_4:10681430-10681449 | Msa0489880:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | - | chr3_4:10681469-10681488 | None:intergenic | 35.0% | |
| !! | GTTTTCTTGTTTCCTAGTCT+TGG | + | chr3_4:10681486-10681505 | Msa0489880:intron | 35.0% |
| !! | TTTCTTGTTTCCTAGTCTTG+GGG | + | chr3_4:10681488-10681507 | Msa0489880:intron | 35.0% |
| ATGTGTAATTTGACTGAAGG+TGG | + | chr3_4:10681622-10681641 | Msa0489880:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | + | chr3_4:10681623-10681642 | Msa0489880:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | - | chr3_4:10681741-10681760 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | + | chr3_4:10681739-10681758 | Msa0489880:CDS | 35.0% |
| ATATTGACATGATGGCAATG+TGG | + | chr3_4:10681891-10681910 | Msa0489880:intron | 35.0% | |
| AGTCGGTTAAATACTAGCAT+TGG | - | chr3_4:10682031-10682050 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | + | chr3_4:10682041-10682060 | Msa0489880:intron | 35.0% |
| TATGAGCAATTTAGCTGTGT+AGG | + | chr3_4:10682101-10682120 | Msa0489880:intron | 35.0% | |
| ATGAGCAATTTAGCTGTGTA+GGG | + | chr3_4:10682102-10682121 | Msa0489880:intron | 35.0% | |
| !! | TGCTTATTGATTTCGAATGG+AGG | + | chr3_4:10682266-10682285 | Msa0489880:intron | 35.0% |
| AAAGCTGAAAGGATTAAAGC+TGG | - | chr3_4:10682483-10682502 | None:intergenic | 35.0% | |
| ATAAACCGAAGAAAGCTGAA+AGG | - | chr3_4:10682494-10682513 | None:intergenic | 35.0% | |
| ! | TTTTCTGACTCTGCTCTTAT+TGG | + | chr3_4:10682514-10682533 | Msa0489880:intron | 35.0% |
| ATGTTGCTCATTGCTTATTG+AGG | + | chr3_4:10682615-10682634 | Msa0489880:intron | 35.0% | |
| ! | TGAGGATTAAGATTAGGTTG+GGG | + | chr3_4:10682633-10682652 | Msa0489880:intron | 35.0% |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | + | chr3_4:10682925-10682944 | Msa0489880:intron | 35.0% |
| GGATTTAACATGTAGTACTG+TGG | + | chr3_4:10683092-10683111 | Msa0489880:three_prime_UTR | 35.0% | |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | + | chr3_4:10682925-10682944 | Msa0489880:intron | 35.0% |
| CTGAGTAATGAGAGGAAATA+TGG | + | chr3_4:10683247-10683266 | Msa0489880:three_prime_UTR | 35.0% | |
| CTCAATTATCACAGATTCAC+AGG | - | chr3_4:10683287-10683306 | None:intergenic | 35.0% | |
| AGGAACAATGTCGTCAAAGA+AGG | + | chr3_4:10680674-10680693 | Msa0489880:CDS | 40.0% | |
| TGCATAAGAGTCGCAACAAT+TGG | + | chr3_4:10680699-10680718 | Msa0489880:CDS | 40.0% | |
| TTCCACGATCTGCCAATATT+CGG | - | chr3_4:10680768-10680787 | None:intergenic | 40.0% | |
| GATAGGTATGGTGAACAAAG+AGG | - | chr3_4:10680914-10680933 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | - | chr3_4:10680926-10680945 | None:intergenic | 40.0% | |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | + | chr3_4:10681066-10681085 | Msa0489880:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | + | chr3_4:10681112-10681131 | Msa0489880:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | + | chr3_4:10681126-10681145 | Msa0489880:intron | 40.0% |
| GGTAGAATCTGAGTTTCACT+AGG | + | chr3_4:10681238-10681257 | Msa0489880:intron | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | + | chr3_4:10681243-10681262 | Msa0489880:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+TGG | + | chr3_4:10681275-10681294 | Msa0489880:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | - | chr3_4:10681307-10681326 | None:intergenic | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | - | chr3_4:10681308-10681327 | None:intergenic | 40.0% | |
| AAACCAATTCTCTGTGGGAA+GGG | + | chr3_4:10681341-10681360 | Msa0489880:intron | 40.0% | |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | + | chr3_4:10681464-10681483 | Msa0489880:intron | 40.0% |
| AAAATCCATACCCCAAGACT+AGG | - | chr3_4:10681501-10681520 | None:intergenic | 40.0% | |
| ! | TTGGGGTATGGATTTTCTCT+AGG | + | chr3_4:10681505-10681524 | Msa0489880:intron | 40.0% |
| TTACACACTTCTTGAGGTGA+AGG | + | chr3_4:10681715-10681734 | Msa0489880:CDS | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | + | chr3_4:10681736-10681755 | Msa0489880:CDS | 40.0% |
| CAGTGCTTTCTATTTCAGTG+TGG | + | chr3_4:10682227-10682246 | Msa0489880:intron | 40.0% | |
| ACCAGACAGAGCACAATATA+CGG | - | chr3_4:10682460-10682479 | None:intergenic | 40.0% | |
| !!! | AGATTAGGTTGGGGTTTTGT+TGG | + | chr3_4:10682642-10682661 | Msa0489880:intron | 40.0% |
| GTTGGACTTAGACTAACACT+TGG | + | chr3_4:10682660-10682679 | Msa0489880:intron | 40.0% | |
| ACTTGGAGTAAAAAGTCCTG+AGG | + | chr3_4:10682677-10682696 | Msa0489880:intron | 40.0% | |
| AAACCATAGCTATGATCCTC+AGG | - | chr3_4:10682696-10682715 | None:intergenic | 40.0% | |
| CTCAAACATGGATTCTCATG+CGG | + | chr3_4:10682844-10682863 | Msa0489880:three_prime_UTR | 40.0% | |
| CATGGTAAATCGTTAGCTGA+AGG | - | chr3_4:10682881-10682900 | None:intergenic | 40.0% | |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | + | chr3_4:10682926-10682945 | Msa0489880:intron | 40.0% |
| !! | CTGTGGGATTTTTCGAAGTT+TGG | + | chr3_4:10683109-10683128 | Msa0489880:three_prime_UTR | 40.0% |
| CTCGTTACTCTCCCGAATAT+TGG | + | chr3_4:10680753-10680772 | Msa0489880:CDS | 45.0% | |
| TCCACGATCTGCCAATATTC+GGG | - | chr3_4:10680767-10680786 | None:intergenic | 45.0% | |
| ! | GAAAAAGCTTGTTCACGTCG+CGG | + | chr3_4:10680785-10680804 | Msa0489880:CDS | 45.0% |
| AACAATACAGCCGCTGCAAT+CGG | - | chr3_4:10680811-10680830 | None:intergenic | 45.0% | |
| ! | TGCTTACCTCCTCTCTAAAG+AGG | + | chr3_4:10680830-10680849 | Msa0489880:CDS | 45.0% |
| ! | CTTCCACTTCCTCTTTAGAG+AGG | - | chr3_4:10680842-10680861 | None:intergenic | 45.0% |
| ! | CTCTAAAGAGGAAGTGGAAG+AGG | + | chr3_4:10680842-10680861 | Msa0489880:CDS | 45.0% |
| AAGAGGAAGAGGAAGAGGAA+GGG | + | chr3_4:10680859-10680878 | Msa0489880:CDS | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | + | chr3_4:10680921-10680940 | Msa0489880:CDS | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | - | chr3_4:10680931-10680950 | None:intergenic | 45.0% | |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | - | chr3_4:10680970-10680989 | None:intergenic | 45.0% |
| ! | TGGATTGGGTTTGTCACTTG+TGG | + | chr3_4:10681029-10681048 | Msa0489880:intron | 45.0% |
| ! | GGATTGGGTTTGTCACTTGT+GGG | + | chr3_4:10681030-10681049 | Msa0489880:intron | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | + | chr3_4:10681042-10681061 | Msa0489880:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | + | chr3_4:10681043-10681062 | Msa0489880:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | + | chr3_4:10681054-10681073 | Msa0489880:intron | 45.0% | |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | + | chr3_4:10681125-10681144 | Msa0489880:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | + | chr3_4:10681127-10681146 | Msa0489880:intron | 45.0% |
| TTCACCAAAGAACCACTTCC+AGG | - | chr3_4:10681282-10681301 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | + | chr3_4:10681312-10681331 | Msa0489880:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | + | chr3_4:10681313-10681332 | Msa0489880:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | - | chr3_4:10681324-10681343 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | + | chr3_4:10681336-10681355 | Msa0489880:intron | 45.0% | |
| GAAACCAATTCTCTGTGGGA+AGG | + | chr3_4:10681340-10681359 | Msa0489880:intron | 45.0% | |
| AAACCCTTCCCACAGAGAAT+TGG | - | chr3_4:10681347-10681366 | None:intergenic | 45.0% | |
| ! | TTCTCTGTGGGAAGGGTTTT+TGG | + | chr3_4:10681348-10681367 | Msa0489880:intron | 45.0% |
| !! | TGTTTCCTAGTCTTGGGGTA+TGG | + | chr3_4:10681493-10681512 | Msa0489880:intron | 45.0% |
| !! | GATGGGTTACACACTTCTTG+AGG | + | chr3_4:10681709-10681728 | Msa0489880:CDS | 45.0% |
| AATGGAAAAAGATGGGGGAG+TGG | - | chr3_4:10681824-10681843 | None:intergenic | 45.0% | |
| AGCAATTTAGCTGTGTAGGG+TGG | + | chr3_4:10682105-10682124 | Msa0489880:intron | 45.0% | |
| GCAATTTAGCTGTGTAGGGT+GGG | + | chr3_4:10682106-10682125 | Msa0489880:intron | 45.0% | |
| TCCGTATATTGTGCTCTGTC+TGG | + | chr3_4:10682456-10682475 | Msa0489880:intron | 45.0% | |
| AGTCCTGAGGATCATAGCTA+TGG | + | chr3_4:10682690-10682709 | Msa0489880:intron | 45.0% | |
| !! | AGTGAGTGCTGAGTAATGAG+AGG | + | chr3_4:10683239-10683258 | Msa0489880:three_prime_UTR | 45.0% |
| TCCCGAATATTGGCAGATCG+TGG | + | chr3_4:10680763-10680782 | Msa0489880:CDS | 50.0% | |
| ! | CCACTTCCTCTTTAGAGAGG+AGG | - | chr3_4:10680839-10680858 | None:intergenic | 50.0% |
| ! | CCTCCTCTCTAAAGAGGAAG+TGG | + | chr3_4:10680836-10680855 | Msa0489880:CDS | 50.0% |
| AGAGGAAGTGGAAGAGGAAG+AGG | + | chr3_4:10680848-10680867 | Msa0489880:CDS | 50.0% | |
| AGTGGAAGAGGAAGAGGAAG+AGG | + | chr3_4:10680854-10680873 | Msa0489880:CDS | 50.0% | |
| AGAGGAAGAGGAAGAGGAAG+AGG | + | chr3_4:10680860-10680879 | Msa0489880:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGAGGA+AGG | + | chr3_4:10680858-10680877 | Msa0489880:CDS | 50.0% | |
| GAAGAGGAAGAGGAAGGGAA+TGG | + | chr3_4:10680870-10680889 | Msa0489880:CDS | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | + | chr3_4:10680968-10680987 | Msa0489880:CDS | 50.0% | |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | + | chr3_4:10681130-10681149 | Msa0489880:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | + | chr3_4:10681131-10681150 | Msa0489880:intron | 50.0% |
| TTGTTTCGTTAGGGGTGGGA+AGG | + | chr3_4:10681135-10681154 | Msa0489880:intron | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | - | chr3_4:10681325-10681344 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | + | chr3_4:10681335-10681354 | Msa0489880:intron | 50.0% | |
| GTCTTGTCTGGTGAGTGTTC+TGG | + | chr3_4:10681442-10681461 | Msa0489880:intron | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | - | chr3_4:10681540-10681559 | None:intergenic | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | - | chr3_4:10681548-10681567 | None:intergenic | 50.0% | |
| GGTGGGTGCTAAAGATGTCT+CGG | + | chr3_4:10681640-10681659 | Msa0489880:intron | 50.0% | |
| AAGAGCAACTCTGCAGCTCT+TGG | + | chr3_4:10681674-10681693 | Msa0489880:CDS | 50.0% | |
| AGGAGGACGCTATTGTCTTG+TGG | + | chr3_4:10681756-10681775 | Msa0489880:CDS | 50.0% | |
| AACATGGATTCTCATGCGGC+AGG | + | chr3_4:10682848-10682867 | Msa0489880:three_prime_UTR | 50.0% | |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | - | chr3_4:10680967-10680986 | None:intergenic | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | + | chr3_4:10681048-10681067 | Msa0489880:intron | 55.0% |
| CCTCCCACTCATAAAGGGAG+TGG | - | chr3_4:10681319-10681338 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | + | chr3_4:10681316-10681335 | Msa0489880:intron | 55.0% | |
| ! | AAGATGTCTCGGTGCACGTC+CGG | + | chr3_4:10681651-10681670 | Msa0489880:CDS | 55.0% |
| GAGCTGCAGAGTTGCTCTTC+CGG | - | chr3_4:10681673-10681692 | None:intergenic | 55.0% | |
| GAGTGGCTCTCACAGTTAGG+TGG | - | chr3_4:10681807-10681826 | None:intergenic | 55.0% | |
| ! | GTGGGCGTGAGGTCAGATTT+TGG | + | chr3_4:10682124-10682143 | Msa0489880:intron | 55.0% |
| ATGGATTCTCATGCGGCAGG+AGG | + | chr3_4:10682851-10682870 | Msa0489880:three_prime_UTR | 55.0% | |
| GGGGAGTGGCTCTCACAGTT+AGG | - | chr3_4:10681810-10681829 | None:intergenic | 60.0% | |
| CACCGCCGCCCAAAACACCA+TGG | + | chr3_4:10680962-10680981 | Msa0489880:CDS | 65.0% | |
| TAGGGGTGGGAAGGCCGAGT+AGG | + | chr3_4:10681144-10681163 | Msa0489880:intron | 65.0% | |
| GTGGGAAGGCCGAGTAGGCT+AGG | + | chr3_4:10681149-10681168 | Msa0489880:intron | 65.0% | |
| AGCTGTGTAGGGTGGGCGTG+AGG | + | chr3_4:10682113-10682132 | Msa0489880:intron | 65.0% | |
| CACGTCGCGGCCGATTGCAG+CGG | + | chr3_4:10680798-10680817 | Msa0489880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10680660 | 10683307 | 10680660 | ID=Msa0489880;Name=Msa0489880 |
| chr3_4 | mRNA | 10680660 | 10683307 | 10680660 | ID=Msa0489880-mRNA-1;Parent=Msa0489880;Name=Msa0489880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.75|1|0.33|0.25|4|419|166 |
| chr3_4 | exon | 10680660 | 10680989 | 10680660 | ID=Msa0489880-mRNA-1:exon:3455;Parent=Msa0489880-mRNA-1 |
| chr3_4 | exon | 10681641 | 10681813 | 10681641 | ID=Msa0489880-mRNA-1:exon:3456;Parent=Msa0489880-mRNA-1 |
| chr3_4 | exon | 10682842 | 10682921 | 10682842 | ID=Msa0489880-mRNA-1:exon:3457;Parent=Msa0489880-mRNA-1 |
| chr3_4 | exon | 10682971 | 10683307 | 10682971 | ID=Msa0489880-mRNA-1:exon:3458;Parent=Msa0489880-mRNA-1 |
| chr3_4 | CDS | 10680660 | 10680989 | 10680660 | ID=Msa0489880-mRNA-1:cds;Parent=Msa0489880-mRNA-1 |
| chr3_4 | CDS | 10681641 | 10681811 | 10681641 | ID=Msa0489880-mRNA-1:cds;Parent=Msa0489880-mRNA-1 |
| chr3_4 | three_prime_UTR | 10681812 | 10681813 | 10681812 | ID=Msa0489880-mRNA-1:three_prime_utr;Parent=Msa0489880-mRNA-1 |
| chr3_4 | three_prime_UTR | 10682842 | 10682921 | 10682842 | ID=Msa0489880-mRNA-1:three_prime_utr;Parent=Msa0489880-mRNA-1 |
| chr3_4 | three_prime_UTR | 10682971 | 10683307 | 10682971 | ID=Msa0489880-mRNA-1:three_prime_utr;Parent=Msa0489880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
