Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0441960 | Msa0441980 | 0.840573 | 8.016714e-58 | -8.615850e-47 |
| Msa0441980 | Msa0489880 | 0.804372 | 2.229148e-49 | -8.615850e-47 |
| Msa0441980 | Msa0565620 | -0.803731 | 3.030558e-49 | -8.615850e-47 |
| Msa0441980 | Msa0614510 | 0.822239 | 2.634540e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAGAGAACCGAATAAA+TGG | 0.287883 | 3_3:+10824990 | None:intergenic |
| TTCCACAATCTGCCAATATT+CGG | 0.289319 | 3_3:+10824517 | None:intergenic |
| GTGGATCAGCTGCTATGTTT+TGG | 0.322518 | 3_3:+10824912 | None:intergenic |
| ATGCATACTTCAAAATATTA+AGG | 0.338549 | 3_3:+10822044 | None:intergenic |
| TCCACAATCTGCCAATATTC+GGG | 0.342849 | 3_3:+10824518 | None:intergenic |
| GAGCTGCAGAGTTGCTCTTC+CGG | 0.345662 | 3_3:+10823618 | None:intergenic |
| AATCCTTAACACCTAATCTA+TGG | 0.347939 | 3_3:+10822180 | None:intergenic |
| AAACCCGAAGTCCATTTATT+CGG | 0.349829 | 3_3:-10825001 | None:intergenic |
| TCTTGGTTTGTTTGAAAAGA+TGG | 0.363394 | 3_3:-10823597 | Msa0441980:CDS |
| GTTATATCAAATTGTTCATA+AGG | 0.378902 | 3_3:+10822202 | None:intergenic |
| CGTGGAAGAGGAAGAGGAAG+AGG | 0.394995 | 3_3:-10824428 | Msa0441980:five_prime_UTR |
| CTCGTTACTCTCCCGAATAT+TGG | 0.398957 | 3_3:-10824529 | Msa0441980:five_prime_UTR |
| CTGAGTAATGAGAGGAAATA+TGG | 0.402178 | 3_3:-10822007 | Msa0441980:three_prime_UTR |
| TAACCATAGATTAGGTGTTA+AGG | 0.408808 | 3_3:-10822183 | Msa0441980:three_prime_UTR |
| GTCGGAAACCGTACGGCCGC+CGG | 0.414890 | 3_3:-10824886 | Msa0441980:five_prime_UTR |
| CGGGTTAATCTTCAGTTTCA+AGG | 0.415970 | 3_3:-10824866 | Msa0441980:five_prime_UTR |
| GAACCGAATAAATGGACTTC+GGG | 0.418967 | 3_3:+10824998 | None:intergenic |
| AACAATACAGCCGCTGCAAT+CGG | 0.422612 | 3_3:+10824474 | None:intergenic |
| ATTTGATATAACCATAGATT+AGG | 0.426119 | 3_3:-10822191 | Msa0441980:three_prime_UTR |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_3:+10823550 | None:intergenic |
| AGTATGGTATCTTTAAAAGT+AGG | 0.435990 | 3_3:-10822262 | Msa0441980:three_prime_UTR |
| GAAGAGGAAGAGGAAGAGGA+AGG | 0.438753 | 3_3:-10824424 | Msa0441980:five_prime_UTR |
| CTCAATTATCACAGATTCAC+AGG | 0.439603 | 3_3:+10821970 | None:intergenic |
| TGAATAAGAGTCGCAACAAT+TGG | 0.445111 | 3_3:-10824583 | Msa0441980:five_prime_UTR |
| CGCCCAAAACACCATGGAAA+AGG | 0.453353 | 3_3:-10824320 | Msa0441980:intron |
| CTTGGTTTGTTTGAAAAGAT+GGG | 0.459057 | 3_3:-10823596 | Msa0441980:CDS |
| AAGAGCAACTCTGCAGCTCT+TGG | 0.462439 | 3_3:-10823614 | Msa0441980:CDS |
| CAATTGGAGAAGTATTAGAT+TGG | 0.473450 | 3_3:-10824567 | Msa0441980:five_prime_UTR |
| AGAGGACGTGGAAGAGGAAG+AGG | 0.489740 | 3_3:-10824434 | Msa0441980:five_prime_UTR |
| TGCTTACCTCCTCTCTAAAG+AGG | 0.494825 | 3_3:-10824452 | Msa0441980:five_prime_UTR |
| AAGATGTCTCGGTGCACGTC+CGG | 0.505757 | 3_3:-10823637 | Msa0441980:CDS |
| CTCTAAAGAGGACGTGGAAG+AGG | 0.510205 | 3_3:-10824440 | Msa0441980:five_prime_UTR |
| GAAGAGGAAGAGGAAGGGAA+TGG | 0.522153 | 3_3:-10824418 | Msa0441980:exon |
| CCTCCTCTCTAAAGAGGACG+TGG | 0.530197 | 3_3:-10824446 | Msa0441980:five_prime_UTR |
| CGGCCGTACGGTTTCCGACA+CGG | 0.533936 | 3_3:+10824890 | None:intergenic |
| CTCTCTTTACGCAACAGAGA+AGG | 0.539863 | 3_3:-10824941 | Msa0441980:five_prime_UTR |
| TCCCGAATATTGGCAGATTG+TGG | 0.540617 | 3_3:-10824519 | Msa0441980:five_prime_UTR |
| GAGTGGCTCTCACAGTTAGG+TGG | 0.542114 | 3_3:+10823484 | None:intergenic |
| AAGAGGAAGAGGAAGAGGAA+GGG | 0.544404 | 3_3:-10824423 | Msa0441980:five_prime_UTR |
| GTATGGTATCTTTAAAAGTA+GGG | 0.544806 | 3_3:-10822261 | Msa0441980:three_prime_UTR |
| TCGGAAACCGTACGGCCGCC+GGG | 0.544835 | 3_3:-10824885 | Msa0441980:five_prime_UTR |
| GATTTAACATGTAGTACTGT+GGG | 0.544885 | 3_3:-10822161 | Msa0441980:three_prime_UTR |
| GGGTTAATCTTCAGTTTCAA+GGG | 0.547826 | 3_3:-10824865 | Msa0441980:intron |
| TTAATTTCAGGTCTCAAACA+TGG | 0.547864 | 3_3:-10822422 | Msa0441980:intron |
| AACATGGATTCTCATGCGGC+AGG | 0.550095 | 3_3:-10822406 | Msa0441980:three_prime_UTR |
| AGGAACAATGTCGTCAAAGA+AGG | 0.558119 | 3_3:-10824608 | Msa0441980:five_prime_UTR |
| CACGTCGCGGCCGATTGCAG+CGG | 0.560201 | 3_3:-10824484 | Msa0441980:five_prime_UTR |
| AGATTAACCCGGCGGCCGTA+CGG | 0.561465 | 3_3:+10824878 | None:intergenic |
| TTACACACTTCTTGAGGTGA+AGG | 0.565558 | 3_3:-10823573 | Msa0441980:exon |
| ATAGGTATGGTGAACAAAGA+GGG | 0.575631 | 3_3:+10824378 | None:intergenic |
| AGAACCGAATAAATGGACTT+CGG | 0.580280 | 3_3:+10824997 | None:intergenic |
| CCACGTCCTCTTTAGAGAGG+AGG | 0.581322 | 3_3:+10824446 | None:intergenic |
| GATGGGTTACACACTTCTTG+AGG | 0.581446 | 3_3:-10823579 | Msa0441980:CDS |
| CTTCCACGTCCTCTTTAGAG+AGG | 0.584682 | 3_3:+10824443 | None:intergenic |
| AGGAGGACGCTATTGTCTTG+TGG | 0.587701 | 3_3:-10823532 | Msa0441980:three_prime_UTR |
| CCACCGTGTCGGAAACCGTA+CGG | 0.591060 | 3_3:-10824893 | Msa0441980:five_prime_UTR |
| CTTGAAACTGAAGATTAACC+CGG | 0.595982 | 3_3:+10824867 | None:intergenic |
| CTAACCATGAAACAGTTACA+AGG | 0.600808 | 3_3:-10824628 | Msa0441980:intron |
| ATGGATTCTCATGCGGCAGG+AGG | 0.606412 | 3_3:-10822403 | Msa0441980:three_prime_UTR |
| GATAGGTATGGTGAACAAAG+AGG | 0.607709 | 3_3:+10824377 | None:intergenic |
| GGATTTAACATGTAGTACTG+TGG | 0.615437 | 3_3:-10822162 | Msa0441980:three_prime_UTR |
| CATGGTAAATCGTTAGCTGA+AGG | 0.616527 | 3_3:+10822376 | None:intergenic |
| CACCGCCGCCCAAAACACCA+TGG | 0.620119 | 3_3:-10824326 | Msa0441980:CDS |
| CACCATACCTATCGTAAACG+TGG | 0.628725 | 3_3:-10824367 | Msa0441980:CDS |
| GGTGGGTGCTAAAGATGTCT+CGG | 0.629911 | 3_3:-10823648 | Msa0441980:CDS |
| TGAATCTGTGATAATTGAGA+AGG | 0.632046 | 3_3:-10821966 | None:intergenic |
| AAAATATACAAAGTACTACA+TGG | 0.635553 | 3_3:+10822358 | None:intergenic |
| CTCAAACATGGATTCTCATG+CGG | 0.636062 | 3_3:-10822410 | Msa0441980:three_prime_UTR |
| AGTGAGTGCTGAGTAATGAG+AGG | 0.650346 | 3_3:-10822015 | Msa0441980:three_prime_UTR |
| TACCACGTTTACGATAGGTA+TGG | 0.651983 | 3_3:+10824365 | None:intergenic |
| TAGCAGCTGATCCACCGTGT+CGG | 0.668395 | 3_3:-10824904 | Msa0441980:five_prime_UTR |
| TGGTATCTTTAAAAGTAGGG+TGG | 0.675146 | 3_3:-10822258 | Msa0441980:three_prime_UTR |
| AGCGATACCACGTTTACGAT+AGG | 0.681782 | 3_3:+10824360 | None:intergenic |
| CCGTACGGTTTCCGACACGG+TGG | 0.766152 | 3_3:+10824893 | None:intergenic |
| GAAACTGAAGATTAACCCGG+CGG | 0.769186 | 3_3:+10824870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTATAATTTTGTTTTT+TGG | - | chr3_3:10822687-10822706 | Msa0441980:intron | 15.0% |
| !!! | ATAATTTTGTTTTTTGGATT+AGG | - | chr3_3:10822693-10822712 | Msa0441980:intron | 15.0% |
| !! | ACTTAGAAAGAAAGAAATTA+GGG | + | chr3_3:10822227-10822246 | None:intergenic | 20.0% |
| !! | AACTTAGAAAGAAAGAAATT+AGG | + | chr3_3:10822228-10822247 | None:intergenic | 20.0% |
| !!! | TTCTAAAGATTGTTATGTTT+TGG | + | chr3_3:10822316-10822335 | None:intergenic | 20.0% |
| !! | GAAAATAATTGAAACTTTGA+TGG | - | chr3_3:10823538-10823557 | Msa0441980:three_prime_UTR | 20.0% |
| !!! | TTGATAGTCAATAATACTTA+GGG | - | chr3_3:10823641-10823660 | Msa0441980:CDS | 20.0% |
| !!! | AAAATATACAAAGTACTACA+TGG | + | chr3_3:10824611-10824630 | None:intergenic | 20.0% |
| !!! | ACTTTGTATATTTTCTAGTA+TGG | - | chr3_3:10824617-10824636 | Msa0441980:intron | 20.0% |
| !!! | ACTTTGTATATTTTCTAGTA+TGG | - | chr3_3:10824617-10824636 | Msa0441980:intron | 20.0% |
| !!! | AAAAATTATCAAAGTACTTG+CGG | + | chr3_3:10824734-10824753 | None:intergenic | 20.0% |
| !! | GTTATATCAAATTGTTCATA+AGG | + | chr3_3:10824767-10824786 | None:intergenic | 20.0% |
| !! | ATTTGATATAACCATAGATT+AGG | - | chr3_3:10824775-10824794 | Msa0441980:intron | 20.0% |
| !! | ATGCATACTTCAAAATATTA+AGG | + | chr3_3:10824925-10824944 | None:intergenic | 20.0% |
| ! | AAGCATTACATACGAATTTA+AGG | + | chr3_3:10822141-10822160 | None:intergenic | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | - | chr3_3:10823067-10823086 | Msa0441980:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_3:10823150-10823169 | None:intergenic | 25.0% |
| !!! | AGACCTTTTTTTGATGTTTT+TGG | - | chr3_3:10823239-10823258 | Msa0441980:intron | 25.0% |
| ! | CAACCAAAAACATCAAAAAA+AGG | + | chr3_3:10823245-10823264 | None:intergenic | 25.0% |
| ! | ACATTGTAACAGACTATTAA+TGG | + | chr3_3:10823284-10823303 | None:intergenic | 25.0% |
| ! | TCAAGAAAATGGAAAAAGAT+GGG | + | chr3_3:10823509-10823528 | None:intergenic | 25.0% |
| ! | TTCAAGAAAATGGAAAAAGA+TGG | + | chr3_3:10823510-10823529 | None:intergenic | 25.0% |
| ! | TCACAAAACATTCAAGAAAA+TGG | + | chr3_3:10823520-10823539 | None:intergenic | 25.0% |
| !! | CTTGATAGTCAATAATACTT+AGG | - | chr3_3:10823640-10823659 | Msa0441980:CDS | 25.0% |
| ! | TTAACTACTAGTACCTTATA+AGG | - | chr3_3:10824004-10824023 | Msa0441980:intron | 25.0% |
| ! | AAATATACTGTTTGAGTATG+TGG | + | chr3_3:10824076-10824095 | None:intergenic | 25.0% |
| ! | CATTTGTTCTCTTAATTGAT+TGG | - | chr3_3:10824293-10824312 | Msa0441980:intron | 25.0% |
| ! | GAAAATATGCAAGTAGTAAA+AGG | + | chr3_3:10824431-10824450 | None:intergenic | 25.0% |
| ! | TAATCGCAATTCATTAAACA+AGG | + | chr3_3:10824456-10824475 | None:intergenic | 25.0% |
| !! | AATTAAATCATGGTGTTTTC+TGG | - | chr3_3:10824519-10824538 | Msa0441980:five_prime_UTR | 25.0% |
| !!! | TGTTTTCTGGATTTAATTTC+AGG | - | chr3_3:10824532-10824551 | Msa0441980:five_prime_UTR | 25.0% |
| !!! | AGTATGGTATCTTTTAAAGT+AGG | - | chr3_3:10824633-10824652 | Msa0441980:intron | 25.0% |
| !!! | GTATGGTATCTTTTAAAGTA+GGG | - | chr3_3:10824634-10824653 | Msa0441980:intron | 25.0% |
| !!! | TATGGTATCTTTTAAAGTAG+GGG | - | chr3_3:10824635-10824654 | Msa0441980:intron | 25.0% |
| !! | AGTATGGTATCTTTAAAAGT+AGG | - | chr3_3:10824704-10824723 | Msa0441980:intron | 25.0% |
| !! | GTATGGTATCTTTAAAAGTA+GGG | - | chr3_3:10824705-10824724 | Msa0441980:intron | 25.0% |
| !!! | AGTTTGGTATCTTTTAAAGT+AGG | - | chr3_3:10824837-10824856 | Msa0441980:intron | 25.0% |
| !!! | GTTTGGTATCTTTTAAAGTA+GGG | - | chr3_3:10824838-10824857 | Msa0441980:intron | 25.0% |
| GGGTTTCAATAGAAATTTGA+GGG | + | chr3_3:10822177-10822196 | None:intergenic | 30.0% | |
| AGGGTTTCAATAGAAATTTG+AGG | + | chr3_3:10822178-10822197 | None:intergenic | 30.0% | |
| TGATTTCTCACTCAAAATGA+GGG | + | chr3_3:10822197-10822216 | None:intergenic | 30.0% | |
| ATGATTTCTCACTCAAAATG+AGG | + | chr3_3:10822198-10822217 | None:intergenic | 30.0% | |
| TTGTAACTGTTTCATGGTTA+GGG | + | chr3_3:10822339-10822358 | None:intergenic | 30.0% | |
| !! | CAATTGGAGAAGTATTAGAT+TGG | - | chr3_3:10822399-10822418 | Msa0441980:three_prime_UTR | 30.0% |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_3:10822758-10822777 | None:intergenic | 30.0% | |
| ! | TATGTATGGAGTTGGTTTAA+TGG | - | chr3_3:10822768-10822787 | Msa0441980:intron | 30.0% |
| AGAAAACAGAAAATCATCAC+AGG | + | chr3_3:10822896-10822915 | None:intergenic | 30.0% | |
| ! | TGTGATGATTTTCTGTTTTC+TGG | - | chr3_3:10822895-10822914 | Msa0441980:intron | 30.0% |
| ! | CTAGGATTATCTTTTATTCC+TGG | - | chr3_3:10822939-10822958 | Msa0441980:intron | 30.0% |
| ! | TTATCTTTTATTCCTGGAAG+TGG | - | chr3_3:10822945-10822964 | Msa0441980:intron | 30.0% |
| !! | TTTTCTTGTTTCCTAGTCTT+GGG | - | chr3_3:10823165-10823184 | Msa0441980:intron | 30.0% |
| ACAATGTGTAATTTGACTGA+AGG | - | chr3_3:10823297-10823316 | Msa0441980:intron | 30.0% | |
| !! | TCTTGGTTTGTTTGAAAAGA+TGG | - | chr3_3:10823369-10823388 | Msa0441980:intron | 30.0% |
| !! | CTTGGTTTGTTTGAAAAGAT+GGG | - | chr3_3:10823370-10823389 | Msa0441980:intron | 30.0% |
| AAGAAAATGGAAAAAGATGG+GGG | + | chr3_3:10823507-10823526 | None:intergenic | 30.0% | |
| CAAGAAAATGGAAAAAGATG+GGG | + | chr3_3:10823508-10823527 | None:intergenic | 30.0% | |
| ! | ATAATTGAAACTTTGATGGC+TGG | - | chr3_3:10823542-10823561 | Msa0441980:three_prime_UTR | 30.0% |
| CTGGTTTAATATTGACATGA+TGG | - | chr3_3:10823561-10823580 | Msa0441980:exon | 30.0% | |
| ! | TTTTGATCGCTATCTTTTTG+TGG | - | chr3_3:10823678-10823697 | Msa0441980:intron | 30.0% |
| TTATCCAAGGATGAAAAAGT+CGG | + | chr3_3:10823726-10823745 | None:intergenic | 30.0% | |
| ! | TGTAAAGAGCATATTATCCA+AGG | + | chr3_3:10823739-10823758 | None:intergenic | 30.0% |
| TGGATAATATGCTCTTTACA+TGG | - | chr3_3:10823739-10823758 | Msa0441980:intron | 30.0% | |
| !! | TTTCTTGAGTGTAGTTCTAA+TGG | - | chr3_3:10823852-10823871 | Msa0441980:intron | 30.0% |
| !! | TTCTTGAGTGTAGTTCTAAT+GGG | - | chr3_3:10823853-10823872 | Msa0441980:intron | 30.0% |
| !! | TGTTGCTTATTGATTTCGAA+TGG | - | chr3_3:10823941-10823960 | Msa0441980:intron | 30.0% |
| TAACGTCATGTAAAGTAACA+CGG | + | chr3_3:10823987-10824006 | None:intergenic | 30.0% | |
| TCTAAAAAGTCGTCCTTATA+AGG | + | chr3_3:10824020-10824039 | None:intergenic | 30.0% | |
| !! | TTTGTCTTTTTCACAGATCT+AGG | - | chr3_3:10824124-10824143 | Msa0441980:intron | 30.0% |
| TTAATCCTTTCAGCTTTCTT+CGG | - | chr3_3:10824198-10824217 | Msa0441980:intron | 30.0% | |
| GCTTATTGAGGATTAAGATT+AGG | - | chr3_3:10824339-10824358 | Msa0441980:CDS | 30.0% | |
| ATTGAGGATTAAGATTAGGT+TGG | - | chr3_3:10824343-10824362 | Msa0441980:CDS | 30.0% | |
| TTGAGGATTAAGATTAGGTT+GGG | - | chr3_3:10824344-10824363 | Msa0441980:CDS | 30.0% | |
| TGCTGATGTCAATTAAATCA+TGG | - | chr3_3:10824509-10824528 | Msa0441980:five_prime_UTR | 30.0% | |
| ! | TTAATTTCAGGTCTCAAACA+TGG | - | chr3_3:10824544-10824563 | Msa0441980:five_prime_UTR | 30.0% |
| ! | CCAAAATATCAAAGTACTTG+TGG | + | chr3_3:10824664-10824683 | None:intergenic | 30.0% |
| ! | CCACAAGTACTTTGATATTT+TGG | - | chr3_3:10824661-10824680 | Msa0441980:intron | 30.0% |
| TAACCATAGATTAGGTGTTA+AGG | - | chr3_3:10824783-10824802 | Msa0441980:intron | 30.0% | |
| AATCCTTAACACCTAATCTA+TGG | + | chr3_3:10824789-10824808 | None:intergenic | 30.0% | |
| GATTTAACATGTAGTACTGT+GGG | - | chr3_3:10824805-10824824 | Msa0441980:intron | 30.0% | |
| ! | AGAACCGAATAAATGGACTT+CGG | + | chr3_3:10821972-10821991 | None:intergenic | 35.0% |
| CTTGAAACTGAAGATTAACC+CGG | + | chr3_3:10822102-10822121 | None:intergenic | 35.0% | |
| GGGTTAATCTTCAGTTTCAA+GGG | - | chr3_3:10822101-10822120 | Msa0441980:three_prime_UTR | 35.0% | |
| CTTGTAACTGTTTCATGGTT+AGG | + | chr3_3:10822340-10822359 | None:intergenic | 35.0% | |
| CTAACCATGAAACAGTTACA+AGG | - | chr3_3:10822338-10822357 | Msa0441980:intron | 35.0% | |
| TGTTCCTTGTAACTGTTTCA+TGG | + | chr3_3:10822345-10822364 | None:intergenic | 35.0% | |
| TGAATAAGAGTCGCAACAAT+TGG | - | chr3_3:10822383-10822402 | Msa0441980:three_prime_UTR | 35.0% | |
| TTCCACAATCTGCCAATATT+CGG | + | chr3_3:10822452-10822471 | None:intergenic | 35.0% | |
| ATAGGTATGGTGAACAAAGA+GGG | + | chr3_3:10822591-10822610 | None:intergenic | 35.0% | |
| ! | AACCTTTTCCATGGTGTTTT+GGG | + | chr3_3:10822651-10822670 | None:intergenic | 35.0% |
| ! | TAACCTTTTCCATGGTGTTT+TGG | + | chr3_3:10822652-10822671 | None:intergenic | 35.0% |
| AAAACACCATGGAAAAGGTT+AGG | - | chr3_3:10822651-10822670 | Msa0441980:intron | 35.0% | |
| ! | AACAAACCTAACCTTTTCCA+TGG | + | chr3_3:10822660-10822679 | None:intergenic | 35.0% |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_3:10822754-10822773 | Msa0441980:intron | 35.0% |
| TAACTGGTTATGTATGGAGT+TGG | - | chr3_3:10822760-10822779 | Msa0441980:intron | 35.0% | |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | - | chr3_3:10822773-10822792 | Msa0441980:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3_3:10822785-10822804 | Msa0441980:intron | 35.0% | |
| AACAAAAAACCTAGCCTACT+CGG | + | chr3_3:10822839-10822858 | None:intergenic | 35.0% | |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_3:10822873-10822892 | None:intergenic | 35.0% |
| GGTAGAATCTTAGTTTCACT+AGG | - | chr3_3:10822916-10822935 | Msa0441980:intron | 35.0% | |
| AATCTTAGTTTCACTAGGCT+AGG | - | chr3_3:10822921-10822940 | Msa0441980:intron | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | - | chr3_3:10823070-10823089 | Msa0441980:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3_3:10823074-10823093 | Msa0441980:intron | 35.0% |
| !! | TTTGTGTAGTTAGTCTTGTC+TGG | - | chr3_3:10823108-10823127 | Msa0441980:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_3:10823147-10823166 | None:intergenic | 35.0% | |
| !! | GTTTTCTTGTTTCCTAGTCT+TGG | - | chr3_3:10823164-10823183 | Msa0441980:intron | 35.0% |
| !! | TTTCTTGTTTCCTAGTCTTG+GGG | - | chr3_3:10823166-10823185 | Msa0441980:intron | 35.0% |
| ATGTGTAATTTGACTGAAGG+TGG | - | chr3_3:10823300-10823319 | Msa0441980:intron | 35.0% | |
| TGTGTAATTTGACTGAAGGT+GGG | - | chr3_3:10823301-10823320 | Msa0441980:intron | 35.0% | |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_3:10823419-10823438 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_3:10823417-10823436 | Msa0441980:intron | 35.0% |
| ATATTGACATGATGGCAATG+TGG | - | chr3_3:10823569-10823588 | Msa0441980:exon | 35.0% | |
| AGTCGGTTAAATACTAGCAT+TGG | + | chr3_3:10823709-10823728 | None:intergenic | 35.0% | |
| !!! | TTAACCGACTTTTTCATCCT+TGG | - | chr3_3:10823719-10823738 | Msa0441980:intron | 35.0% |
| ATGAGCAATTTAGCTGTGTA+AGG | - | chr3_3:10823780-10823799 | Msa0441980:intron | 35.0% | |
| !! | TGCTTATTGATTTCGAATGG+AGG | - | chr3_3:10823944-10823963 | Msa0441980:intron | 35.0% |
| ! | AAGGACGACTTTTTAGATAG+TGG | - | chr3_3:10824023-10824042 | Msa0441980:intron | 35.0% |
| AAAGCTGAAAGGATTAAAGC+TGG | + | chr3_3:10824195-10824214 | None:intergenic | 35.0% | |
| ATAAACCGAAGAAAGCTGAA+AGG | + | chr3_3:10824206-10824225 | None:intergenic | 35.0% | |
| ! | TTTTCTGACTCTGCTCTTAT+TGG | - | chr3_3:10824226-10824245 | Msa0441980:intron | 35.0% |
| ATGTTGCTCATTGCTTATTG+AGG | - | chr3_3:10824327-10824346 | Msa0441980:CDS | 35.0% | |
| ! | TGAGGATTAAGATTAGGTTG+GGG | - | chr3_3:10824345-10824364 | Msa0441980:CDS | 35.0% |
| ! | TGGTATCTTTAAAAGTAGGG+TGG | - | chr3_3:10824708-10824727 | Msa0441980:intron | 35.0% |
| GGATTTAACATGTAGTACTG+TGG | - | chr3_3:10824804-10824823 | Msa0441980:intron | 35.0% | |
| !!! | TGGTATCTTTTAAAGTAGGG+TGG | - | chr3_3:10824637-10824656 | Msa0441980:intron | 35.0% |
| CTGAGTAATGAGAGGAAATA+TGG | - | chr3_3:10824959-10824978 | Msa0441980:five_prime_UTR | 35.0% | |
| CTCAATTATCACAGATTCAC+AGG | + | chr3_3:10824999-10825018 | None:intergenic | 35.0% | |
| GAGAGAGAGAACCGAATAAA+TGG | + | chr3_3:10821979-10821998 | None:intergenic | 40.0% | |
| CGGGTTAATCTTCAGTTTCA+AGG | - | chr3_3:10822100-10822119 | Msa0441980:three_prime_UTR | 40.0% | |
| AGGAACAATGTCGTCAAAGA+AGG | - | chr3_3:10822358-10822377 | Msa0441980:three_prime_UTR | 40.0% | |
| TCCACAATCTGCCAATATTC+GGG | + | chr3_3:10822451-10822470 | None:intergenic | 40.0% | |
| GATAGGTATGGTGAACAAAG+AGG | + | chr3_3:10822592-10822611 | None:intergenic | 40.0% | |
| TACCACGTTTACGATAGGTA+TGG | + | chr3_3:10822604-10822623 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_3:10822707-10822726 | Msa0441980:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_3:10822708-10822727 | Msa0441980:intron | 40.0% |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_3:10822744-10822763 | Msa0441980:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3_3:10822790-10822809 | Msa0441980:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3_3:10822804-10822823 | Msa0441980:intron | 40.0% |
| TATTCCTGGAAGTGGTTCTT+TGG | - | chr3_3:10822953-10822972 | Msa0441980:intron | 40.0% | |
| AAAGGGAGTGGCAATGATTA+GGG | + | chr3_3:10822985-10823004 | None:intergenic | 40.0% | |
| TAAAGGGAGTGGCAATGATT+AGG | + | chr3_3:10822986-10823005 | None:intergenic | 40.0% | |
| AAACCAATTCTCTGTGGGAA+GGG | - | chr3_3:10823019-10823038 | Msa0441980:intron | 40.0% | |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_3:10823142-10823161 | Msa0441980:intron | 40.0% |
| AAAATCCATACCCCAAGACT+AGG | + | chr3_3:10823179-10823198 | None:intergenic | 40.0% | |
| ! | TTGGGGTATGGATTTTCTCT+AGG | - | chr3_3:10823183-10823202 | Msa0441980:intron | 40.0% |
| TTACACACTTCTTGAGGTGA+AGG | - | chr3_3:10823393-10823412 | Msa0441980:intron | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_3:10823414-10823433 | Msa0441980:intron | 40.0% |
| AGCAATTTAGCTGTGTAAGG+TGG | - | chr3_3:10823783-10823802 | Msa0441980:intron | 40.0% | |
| GCAATTTAGCTGTGTAAGGT+GGG | - | chr3_3:10823784-10823803 | Msa0441980:intron | 40.0% | |
| CAGTGCTTTCTATTTCAGTG+TGG | - | chr3_3:10823905-10823924 | Msa0441980:intron | 40.0% | |
| ACCAGACAGAGCACAATATA+CGG | + | chr3_3:10824172-10824191 | None:intergenic | 40.0% | |
| !!! | AGATTAGGTTGGGGTTTTGT+TGG | - | chr3_3:10824354-10824373 | Msa0441980:CDS | 40.0% |
| GTTGGACTTAGACTAACACT+TGG | - | chr3_3:10824372-10824391 | Msa0441980:CDS | 40.0% | |
| ACTTGGAGTAAAAAGTCCTG+AGG | - | chr3_3:10824389-10824408 | Msa0441980:CDS | 40.0% | |
| AAACCATAGCTATGATCCTC+AGG | + | chr3_3:10824408-10824427 | None:intergenic | 40.0% | |
| CTCAAACATGGATTCTCATG+CGG | - | chr3_3:10824556-10824575 | Msa0441980:five_prime_UTR | 40.0% | |
| CATGGTAAATCGTTAGCTGA+AGG | + | chr3_3:10824593-10824612 | None:intergenic | 40.0% | |
| !!! | GGTATCTTTTAAAGTAGGGG+TGG | - | chr3_3:10824638-10824657 | Msa0441980:intron | 40.0% |
| !! | CTGTGGGATTTTTCGAAGTT+TGG | - | chr3_3:10824821-10824840 | Msa0441980:intron | 40.0% |
| CTCTCTTTACGCAACAGAGA+AGG | - | chr3_3:10822025-10822044 | Msa0441980:three_prime_UTR | 45.0% | |
| ! | GTGGATCAGCTGCTATGTTT+TGG | + | chr3_3:10822057-10822076 | None:intergenic | 45.0% |
| GAAACTGAAGATTAACCCGG+CGG | + | chr3_3:10822099-10822118 | None:intergenic | 45.0% | |
| CTCGTTACTCTCCCGAATAT+TGG | - | chr3_3:10822437-10822456 | Msa0441980:intron | 45.0% | |
| TCCCGAATATTGGCAGATTG+TGG | - | chr3_3:10822447-10822466 | Msa0441980:intron | 45.0% | |
| ! | GAAAAAGCTTGTTCACGTCG+CGG | - | chr3_3:10822469-10822488 | Msa0441980:intron | 45.0% |
| AACAATACAGCCGCTGCAAT+CGG | + | chr3_3:10822495-10822514 | None:intergenic | 45.0% | |
| ! | TGCTTACCTCCTCTCTAAAG+AGG | - | chr3_3:10822514-10822533 | Msa0441980:intron | 45.0% |
| AAGAGGAAGAGGAAGAGGAA+GGG | - | chr3_3:10822543-10822562 | Msa0441980:intron | 45.0% | |
| CACCATACCTATCGTAAACG+TGG | - | chr3_3:10822599-10822618 | Msa0441980:intron | 45.0% | |
| AGCGATACCACGTTTACGAT+AGG | + | chr3_3:10822609-10822628 | None:intergenic | 45.0% | |
| !! | CTTTTCCATGGTGTTTTGGG+CGG | + | chr3_3:10822648-10822667 | None:intergenic | 45.0% |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_3:10822720-10822739 | Msa0441980:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_3:10822721-10822740 | Msa0441980:intron | 45.0% |
| TAGCGTATAGGGTGTGGTAT+AGG | - | chr3_3:10822732-10822751 | Msa0441980:intron | 45.0% | |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3_3:10822803-10822822 | Msa0441980:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3_3:10822805-10822824 | Msa0441980:intron | 45.0% |
| TTCACCAAAGAACCACTTCC+AGG | + | chr3_3:10822960-10822979 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_3:10822990-10823009 | Msa0441980:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_3:10822991-10823010 | Msa0441980:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3_3:10823002-10823021 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_3:10823014-10823033 | Msa0441980:intron | 45.0% | |
| GAAACCAATTCTCTGTGGGA+AGG | - | chr3_3:10823018-10823037 | Msa0441980:intron | 45.0% | |
| AAACCCTTCCCACAGAGAAT+TGG | + | chr3_3:10823025-10823044 | None:intergenic | 45.0% | |
| ! | TTCTCTGTGGGAAGGGTTTT+TGG | - | chr3_3:10823026-10823045 | Msa0441980:intron | 45.0% |
| !! | TGTTTCCTAGTCTTGGGGTA+TGG | - | chr3_3:10823171-10823190 | Msa0441980:intron | 45.0% |
| !! | GATGGGTTACACACTTCTTG+AGG | - | chr3_3:10823387-10823406 | Msa0441980:intron | 45.0% |
| AATGGAAAAAGATGGGGGAG+TGG | + | chr3_3:10823502-10823521 | None:intergenic | 45.0% | |
| TCCGTATATTGTGCTCTGTC+TGG | - | chr3_3:10824168-10824187 | Msa0441980:intron | 45.0% | |
| AGTCCTGAGGATCATAGCTA+TGG | - | chr3_3:10824402-10824421 | Msa0441980:CDS | 45.0% | |
| !! | AGTGAGTGCTGAGTAATGAG+AGG | - | chr3_3:10824951-10824970 | Msa0441980:five_prime_UTR | 45.0% |
| ! | CTTCCACGTCCTCTTTAGAG+AGG | + | chr3_3:10822526-10822545 | None:intergenic | 50.0% |
| ! | CTCTAAAGAGGACGTGGAAG+AGG | - | chr3_3:10822526-10822545 | Msa0441980:intron | 50.0% |
| GAAGAGGAAGAGGAAGAGGA+AGG | - | chr3_3:10822542-10822561 | Msa0441980:intron | 50.0% | |
| GAAGAGGAAGAGGAAGGGAA+TGG | - | chr3_3:10822548-10822567 | Msa0441980:intron | 50.0% | |
| CGCCCAAAACACCATGGAAA+AGG | - | chr3_3:10822646-10822665 | Msa0441980:intron | 50.0% | |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3_3:10822808-10822827 | Msa0441980:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | - | chr3_3:10822809-10822828 | Msa0441980:intron | 50.0% |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_3:10822813-10822832 | Msa0441980:intron | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3_3:10823003-10823022 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_3:10823013-10823032 | Msa0441980:intron | 50.0% | |
| GTCTTGTCTGGTGAGTGTTC+TGG | - | chr3_3:10823120-10823139 | Msa0441980:intron | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3_3:10823218-10823237 | None:intergenic | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | + | chr3_3:10823226-10823245 | None:intergenic | 50.0% | |
| GGTGGGTGCTAAAGATGTCT+CGG | - | chr3_3:10823318-10823337 | Msa0441980:intron | 50.0% | |
| AAGAGCAACTCTGCAGCTCT+TGG | - | chr3_3:10823352-10823371 | Msa0441980:intron | 50.0% | |
| AGGAGGACGCTATTGTCTTG+TGG | - | chr3_3:10823434-10823453 | Msa0441980:intron | 50.0% | |
| AACATGGATTCTCATGCGGC+AGG | - | chr3_3:10824560-10824579 | Msa0441980:five_prime_UTR | 50.0% | |
| TAGCAGCTGATCCACCGTGT+CGG | - | chr3_3:10822062-10822081 | Msa0441980:three_prime_UTR | 55.0% | |
| ! | CCACGTCCTCTTTAGAGAGG+AGG | + | chr3_3:10822523-10822542 | None:intergenic | 55.0% |
| ! | CCTCCTCTCTAAAGAGGACG+TGG | - | chr3_3:10822520-10822539 | Msa0441980:intron | 55.0% |
| AGAGGACGTGGAAGAGGAAG+AGG | - | chr3_3:10822532-10822551 | Msa0441980:intron | 55.0% | |
| CGTGGAAGAGGAAGAGGAAG+AGG | - | chr3_3:10822538-10822557 | Msa0441980:intron | 55.0% | |
| !! | TTCCATGGTGTTTTGGGCGG+CGG | + | chr3_3:10822645-10822664 | None:intergenic | 55.0% |
| !! | GTGGGTTAGCGTATAGGGTG+TGG | - | chr3_3:10822726-10822745 | Msa0441980:intron | 55.0% |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_3:10822997-10823016 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_3:10822994-10823013 | Msa0441980:intron | 55.0% | |
| ! | AAGATGTCTCGGTGCACGTC+CGG | - | chr3_3:10823329-10823348 | Msa0441980:intron | 55.0% |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_3:10823351-10823370 | None:intergenic | 55.0% | |
| GAGTGGCTCTCACAGTTAGG+TGG | + | chr3_3:10823485-10823504 | None:intergenic | 55.0% | |
| ! | GTGGGCGTGAGGTCAGATTT+TGG | - | chr3_3:10823802-10823821 | Msa0441980:intron | 55.0% |
| ATGGATTCTCATGCGGCAGG+AGG | - | chr3_3:10824563-10824582 | Msa0441980:five_prime_UTR | 55.0% | |
| CCACCGTGTCGGAAACCGTA+CGG | - | chr3_3:10822073-10822092 | Msa0441980:three_prime_UTR | 60.0% | |
| AGATTAACCCGGCGGCCGTA+CGG | + | chr3_3:10822091-10822110 | None:intergenic | 60.0% | |
| GGGGAGTGGCTCTCACAGTT+AGG | + | chr3_3:10823488-10823507 | None:intergenic | 60.0% | |
| AGCTGTGTAAGGTGGGCGTG+AGG | - | chr3_3:10823791-10823810 | Msa0441980:intron | 60.0% | |
| CCGTACGGTTTCCGACACGG+TGG | + | chr3_3:10822076-10822095 | None:intergenic | 65.0% | |
| CGGCCGTACGGTTTCCGACA+CGG | + | chr3_3:10822079-10822098 | None:intergenic | 65.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_3:10822640-10822659 | Msa0441980:intron | 65.0% | |
| TAGGGGTGGGAAGGCCGAGT+AGG | - | chr3_3:10822822-10822841 | Msa0441980:intron | 65.0% | |
| GTGGGAAGGCCGAGTAGGCT+AGG | - | chr3_3:10822827-10822846 | Msa0441980:intron | 65.0% | |
| GTCGGAAACCGTACGGCCGC+CGG | - | chr3_3:10822080-10822099 | Msa0441980:three_prime_UTR | 70.0% | |
| TCGGAAACCGTACGGCCGCC+GGG | - | chr3_3:10822081-10822100 | Msa0441980:three_prime_UTR | 70.0% | |
| CACGTCGCGGCCGATTGCAG+CGG | - | chr3_3:10822482-10822501 | Msa0441980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 10821969 | 10825019 | 10821969 | ID=Msa0441980;Name=Msa0441980 |
| chr3_3 | mRNA | 10821969 | 10825019 | 10821969 | ID=Msa0441980-mRNA-1;Parent=Msa0441980;Name=Msa0441980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=368|1|1|1|0.25|0.2|5|496|64 |
| chr3_3 | exon | 10821969 | 10822305 | 10821969 | ID=Msa0441980-mRNA-1:exon:2348;Parent=Msa0441980-mRNA-1 |
| chr3_3 | exon | 10822355 | 10822434 | 10822355 | ID=Msa0441980-mRNA-1:exon:2347;Parent=Msa0441980-mRNA-1 |
| chr3_3 | exon | 10823497 | 10823669 | 10823497 | ID=Msa0441980-mRNA-1:exon:2346;Parent=Msa0441980-mRNA-1 |
| chr3_3 | exon | 10824321 | 10824635 | 10824321 | ID=Msa0441980-mRNA-1:exon:2345;Parent=Msa0441980-mRNA-1 |
| chr3_3 | exon | 10824866 | 10825019 | 10824866 | ID=Msa0441980-mRNA-1:exon:2344;Parent=Msa0441980-mRNA-1 |
| chr3_3 | five_prime_UTR | 10824866 | 10825019 | 10824866 | ID=Msa0441980-mRNA-1:five_prime_utr;Parent=Msa0441980-mRNA-1 |
| chr3_3 | five_prime_UTR | 10824422 | 10824635 | 10824422 | ID=Msa0441980-mRNA-1:five_prime_utr;Parent=Msa0441980-mRNA-1 |
| chr3_3 | CDS | 10824321 | 10824421 | 10824321 | ID=Msa0441980-mRNA-1:cds;Parent=Msa0441980-mRNA-1 |
| chr3_3 | CDS | 10823576 | 10823669 | 10823576 | ID=Msa0441980-mRNA-1:cds;Parent=Msa0441980-mRNA-1 |
| chr3_3 | three_prime_UTR | 10823497 | 10823575 | 10823497 | ID=Msa0441980-mRNA-1:three_prime_utr;Parent=Msa0441980-mRNA-1 |
| chr3_3 | three_prime_UTR | 10822355 | 10822434 | 10822355 | ID=Msa0441980-mRNA-1:three_prime_utr;Parent=Msa0441980-mRNA-1 |
| chr3_3 | three_prime_UTR | 10821969 | 10822305 | 10821969 | ID=Msa0441980-mRNA-1:three_prime_utr;Parent=Msa0441980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
