Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489930 | RHN65490.1 | 78.723 | 658 | 84 | 5 | 4 | 661 | 2 | 603 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489930 | A0A396IJW8 | 78.723 | 658 | 84 | 5 | 4 | 661 | 2 | 603 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0394770 | Msa0489930 | 0.831904 | 1.281227e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489930 | MtrunA17_Chr3g0080441 | 78.723 | 658 | 84 | 5 | 4 | 661 | 2 | 603 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489930 | AT1G48560.1 | 38.760 | 129 | 75 | 4 | 535 | 661 | 515 | 641 | 1.80e-15 | 80.5 |
| Msa0489930 | AT1G48560.2 | 38.760 | 129 | 75 | 4 | 535 | 661 | 534 | 660 | 2.11e-15 | 80.5 |
Find 120 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCCATATCCACTTTA+TGG | 0.076729 | 3_4:+11038425 | None:intergenic |
| GTTTGACCCGATTGGAGTTT+TGG | 0.222197 | 3_4:-11041760 | Msa0489930:CDS |
| ATAAAGAAGTTCAGTGTATT+TGG | 0.231819 | 3_4:-11038010 | Msa0489930:CDS |
| TTCGAAAAGGTGACATAGTT+TGG | 0.252992 | 3_4:-11042097 | Msa0489930:CDS |
| CGTTCTGCACTTAGGTTATT+TGG | 0.257181 | 3_4:-11041867 | Msa0489930:CDS |
| AAGGTGCGTTGTGGGGTGTT+AGG | 0.262813 | 3_4:+11041963 | None:intergenic |
| TTTATTAACTGTTCCTTTGA+TGG | 0.266375 | 3_4:+11038028 | None:intergenic |
| CCTTAAGCCCATTCCACATT+TGG | 0.272294 | 3_4:-11038879 | Msa0489930:CDS |
| TTTATTCTTGCCGACTCTTT+TGG | 0.282033 | 3_4:+11038208 | None:intergenic |
| CTTAAGCCCATTCCACATTT+GGG | 0.282277 | 3_4:-11038878 | Msa0489930:CDS |
| CTTCTTTGTAGAGTTTCTTC+TGG | 0.284374 | 3_4:+11041628 | None:intergenic |
| GTGAAGATTATGCTAGTTTC+AGG | 0.284969 | 3_4:+11038457 | None:intergenic |
| TGATGGTAGGTTGAAATTCT+TGG | 0.296686 | 3_4:+11038045 | None:intergenic |
| TACAAAGAAGCTACAAAATT+AGG | 0.312714 | 3_4:-11041615 | Msa0489930:intron |
| GATGGTAGGTTGAAATTCTT+GGG | 0.313799 | 3_4:+11038046 | None:intergenic |
| GTGATGCTGGTATCCGGTTT+TGG | 0.330299 | 3_4:-11037868 | Msa0489930:CDS |
| ACCAAACCATACCTTCCTTT+TGG | 0.336470 | 3_4:+11037889 | None:intergenic |
| CTCAGTTACTCGAGAATCTA+TGG | 0.338466 | 3_4:-11039100 | Msa0489930:CDS |
| TGATGCTGCTGTTCTGCCTT+GGG | 0.340558 | 3_4:-11041727 | Msa0489930:CDS |
| AACCTCAGATTCGACGAAAA+AGG | 0.343210 | 3_4:+11041944 | None:intergenic |
| CAACGATTGGTCTCCGGCTT+TGG | 0.345750 | 3_4:-11042033 | Msa0489930:CDS |
| ACTCATTTGGTCGATTATAT+CGG | 0.361192 | 3_4:-11038721 | Msa0489930:CDS |
| TTGATGCTGCTGTTCTGCCT+TGG | 0.362324 | 3_4:-11041728 | Msa0489930:CDS |
| GAAGCCAACAGTTCCTGATT+TGG | 0.362711 | 3_4:-11038998 | Msa0489930:CDS |
| TGAGGTCCATAAAGTGGATA+TGG | 0.363415 | 3_4:-11038431 | Msa0489930:CDS |
| TCACATTGAAAGATGTGGTT+TGG | 0.369454 | 3_4:+11041897 | None:intergenic |
| TCGATACCCAATTTAAAAGT+TGG | 0.371331 | 3_4:-11038124 | Msa0489930:CDS |
| AAAATCCAATTCCTTGAAAC+AGG | 0.374502 | 3_4:-11037747 | Msa0489930:CDS |
| GGACATAAAGCATGTTTATC+TGG | 0.374770 | 3_4:+11038613 | None:intergenic |
| AGGTGCGTTGTGGGGTGTTA+GGG | 0.377797 | 3_4:+11041964 | None:intergenic |
| TTCCGACTTCAAGACTCATT+TGG | 0.383976 | 3_4:-11038734 | Msa0489930:CDS |
| TGCTGTTCTGCCTTGGGTTG+AGG | 0.390569 | 3_4:-11041721 | Msa0489930:CDS |
| AGAGAATGTCCTTCCAAATC+AGG | 0.407399 | 3_4:+11038985 | None:intergenic |
| ACAAGAAGCAACATATTGAT+AGG | 0.415947 | 3_4:+11038147 | None:intergenic |
| TTGCGGTGTCTTTGTATAAC+GGG | 0.417465 | 3_4:-11041825 | Msa0489930:CDS |
| CATCCCTCAGCAAAACTAAC+AGG | 0.420090 | 3_4:-11037794 | Msa0489930:CDS |
| TTAAAAGTTGGAGAGCAATC+AGG | 0.420947 | 3_4:-11038112 | Msa0489930:CDS |
| CCAAATGTGGAATGGGCTTA+AGG | 0.421130 | 3_4:+11038879 | None:intergenic |
| CATATAGTGGTTTCTATGTC+AGG | 0.421269 | 3_4:+11038658 | None:intergenic |
| TCGAAAAGGTGACATAGTTT+GGG | 0.422847 | 3_4:-11042096 | Msa0489930:CDS |
| TTTGCGGTGTCTTTGTATAA+CGG | 0.426012 | 3_4:-11041826 | Msa0489930:CDS |
| TTTCTTCGTTTGTGTTCAAA+AGG | 0.435082 | 3_4:+11037839 | None:intergenic |
| GTAGAGTTTCTTCTGGTGAA+TGG | 0.436827 | 3_4:+11041635 | None:intergenic |
| CCACTGGTAGTTGGAACCTC+TGG | 0.437260 | 3_4:+11038931 | None:intergenic |
| TTGTTACACTGGCTCAGCTC+AGG | 0.437997 | 3_4:-11037957 | Msa0489930:CDS |
| TCAGAATTGTTTCGAGTTTG+CGG | 0.438255 | 3_4:-11041842 | Msa0489930:CDS |
| TCTTTCCCCAAATGTGGAAT+GGG | 0.445797 | 3_4:+11038872 | None:intergenic |
| TGAAAGATGTGGTTTGGAAA+GGG | 0.452264 | 3_4:+11041903 | None:intergenic |
| ACAAAACCCAAAACTCCAAT+CGG | 0.453480 | 3_4:+11041753 | None:intergenic |
| AACTTCGTTGCAGCCTCTCC+TGG | 0.458671 | 3_4:+11038263 | None:intergenic |
| TTAACTGTTCCTTTGATGGT+AGG | 0.461756 | 3_4:+11038032 | None:intergenic |
| AAAACAGAAAGAAACATTGT+AGG | 0.465799 | 3_4:-11037724 | Msa0489930:CDS |
| AAGGTATGGTTTGGTGATGC+TGG | 0.469827 | 3_4:-11037881 | Msa0489930:CDS |
| CAAAAGGATCTAGCCAAAAC+CGG | 0.471648 | 3_4:+11037855 | None:intergenic |
| CTGCATATCAATATGCCAAA+AGG | 0.476078 | 3_4:-11037904 | Msa0489930:CDS |
| GGTTTGGTGATGCTGGTATC+CGG | 0.481359 | 3_4:-11037874 | Msa0489930:CDS |
| TTCTTTCCCCAAATGTGGAA+TGG | 0.482297 | 3_4:+11038871 | None:intergenic |
| GAGTGAGATGCCGAGGTGGC+TGG | 0.483845 | 3_4:+11042001 | None:intergenic |
| AAGTATTCGAAAAGACAATC+TGG | 0.485191 | 3_4:-11038494 | Msa0489930:CDS |
| GCCAAAAGGAAGGTATGGTT+TGG | 0.487513 | 3_4:-11037890 | Msa0489930:CDS |
| GGTTATCAGTTTGACCCGAT+TGG | 0.490496 | 3_4:-11041768 | Msa0489930:CDS |
| TTGAAAGATGTGGTTTGGAA+AGG | 0.492417 | 3_4:+11041902 | None:intergenic |
| GTCGATTATATCGGTGAAAG+AGG | 0.494744 | 3_4:-11038712 | Msa0489930:CDS |
| TTCTGCGGATCGTTTGTTAG+AGG | 0.495114 | 3_4:-11038179 | Msa0489930:CDS |
| CTGGAAAATGTGACCAAAGC+CGG | 0.500960 | 3_4:+11042020 | None:intergenic |
| CCTTCCAAATCAGGAACTGT+TGG | 0.502720 | 3_4:+11038994 | None:intergenic |
| ATCTAACTCTTCTGTTTACC+AGG | 0.505522 | 3_4:-11038281 | Msa0489930:CDS |
| CAATCTTCTTATAGCACCAA+TGG | 0.505651 | 3_4:+11039020 | None:intergenic |
| TCAGCTTTACCACTGGTAGT+TGG | 0.510578 | 3_4:+11038922 | None:intergenic |
| TAGCCTCATGATTATCAGAA+TGG | 0.511698 | 3_4:+11038338 | None:intergenic |
| GAAGGAAAGAAGCATGAGAA+AGG | 0.516021 | 3_4:-11042120 | None:intergenic |
| TCATCTCCTAGTTTAGCGTC+TGG | 0.519441 | 3_4:-11038364 | Msa0489930:CDS |
| CACTGATGAGGTCCATAAAG+TGG | 0.520491 | 3_4:-11038437 | Msa0489930:CDS |
| AAGCGTTCCGTTCTGCACTT+AGG | 0.520680 | 3_4:-11041875 | Msa0489930:CDS |
| TCTGCGGATCGTTTGTTAGA+GGG | 0.522091 | 3_4:-11038178 | Msa0489930:CDS |
| ATTCACATGTAAAAGACTGT+TGG | 0.523862 | 3_4:+11038386 | None:intergenic |
| ATGTGGAATGGGCTTAAGGC+AGG | 0.528234 | 3_4:+11038883 | None:intergenic |
| TGGAAGCCAGACGCTAAACT+AGG | 0.529369 | 3_4:+11038358 | None:intergenic |
| AATATGCCAAAAGGAAGGTA+TGG | 0.531757 | 3_4:-11037895 | Msa0489930:CDS |
| TTACACTGGCTCAGCTCAGG+TGG | 0.537648 | 3_4:-11037954 | Msa0489930:CDS |
| CAACAACAACGATTGGTCTC+CGG | 0.538740 | 3_4:-11042039 | Msa0489930:CDS |
| AAACAGAAAGAAACATTGTA+GGG | 0.540251 | 3_4:-11037723 | Msa0489930:CDS |
| TCTTGAGCTCTGCAAAGTTG+AGG | 0.544614 | 3_4:+11038592 | None:intergenic |
| AGCATGAGAAAGGTTCGAAA+AGG | 0.546119 | 3_4:-11042110 | Msa0489930:CDS |
| GTACTGATGTGTGAGATCCT+AGG | 0.551189 | 3_4:+11038532 | None:intergenic |
| GGAAAGGGAAATTCATCGAA+AGG | 0.552009 | 3_4:+11041918 | None:intergenic |
| TTAGATTCTTTCCCCAAATG+TGG | 0.557194 | 3_4:+11038866 | None:intergenic |
| GAAAGAATCTAAAATTTGAA+AGG | 0.557568 | 3_4:-11038855 | Msa0489930:CDS |
| GCACACGAAGCCTCAACCCA+AGG | 0.562090 | 3_4:+11041711 | None:intergenic |
| GGGTCATAACGAAGAGGAGA+GGG | 0.567565 | 3_4:-11041805 | Msa0489930:CDS |
| GGCAACCTAGAGAAAAGCCT+TGG | 0.571018 | 3_4:+11038679 | None:intergenic |
| GATAATCATGAGGCTAATGC+CGG | 0.573850 | 3_4:-11038331 | Msa0489930:CDS |
| ACGCTTCACATTGAAAGATG+TGG | 0.576472 | 3_4:+11041892 | None:intergenic |
| ATCTATGGCGATAGAACCCA+AGG | 0.577922 | 3_4:-11039085 | Msa0489930:CDS |
| GAATTTCAACCTACCATCAA+AGG | 0.580977 | 3_4:-11038041 | Msa0489930:CDS |
| ATGAGTCTTGAAGTCGGAAG+CGG | 0.581253 | 3_4:+11038738 | None:intergenic |
| AAAGAGTTCAGCTTTACCAC+TGG | 0.582690 | 3_4:+11038915 | None:intergenic |
| TTAAGCCCATTCCACATTTG+GGG | 0.584028 | 3_4:-11038877 | Msa0489930:CDS |
| ACTCTTCTGTTTACCAGGAG+AGG | 0.585563 | 3_4:-11038276 | Msa0489930:CDS |
| ACCTCTTAAGCCAAAAGAGT+CGG | 0.589501 | 3_4:-11038218 | Msa0489930:CDS |
| CAAAACCCAAAACTCCAATC+GGG | 0.590229 | 3_4:+11041754 | None:intergenic |
| AGTTTCAGGAAAGTGTATGC+AGG | 0.591837 | 3_4:+11038471 | None:intergenic |
| TCTCAAGAAATACTAAACCT+AGG | 0.592780 | 3_4:-11038549 | Msa0489930:CDS |
| CCAACAGTTCCTGATTTGGA+AGG | 0.609446 | 3_4:-11038994 | Msa0489930:CDS |
| GAGTAGCTTCTGACTCAAAG+AGG | 0.612627 | 3_4:+11039122 | None:intergenic |
| TAGCATAATCTTCACTGATG+AGG | 0.627648 | 3_4:-11038449 | Msa0489930:CDS |
| CTTCCATTCTGATAATCATG+AGG | 0.635887 | 3_4:-11038341 | Msa0489930:CDS |
| ATGGTAGGTTGAAATTCTTG+GGG | 0.638122 | 3_4:+11038047 | None:intergenic |
| ATCAGGTCATATCTGACCGA+GGG | 0.640083 | 3_4:-11039056 | Msa0489930:CDS |
| AGGCTGCAACGAAGTTGTGA+TGG | 0.640538 | 3_4:-11038256 | Msa0489930:CDS |
| GACCAAATGAGTCTTGAAGT+CGG | 0.648590 | 3_4:+11038732 | None:intergenic |
| ATATCAATATGCCAAAAGGA+AGG | 0.651796 | 3_4:-11037900 | Msa0489930:CDS |
| AGAATGAGAGTGAGATGCCG+AGG | 0.658547 | 3_4:+11041994 | None:intergenic |
| CAAATAACCTAAGTGCAGAA+CGG | 0.664388 | 3_4:+11041868 | None:intergenic |
| CCAGAGGTTCCAACTACCAG+TGG | 0.669521 | 3_4:-11038931 | Msa0489930:CDS |
| CGGGTCATAACGAAGAGGAG+AGG | 0.685231 | 3_4:-11041806 | Msa0489930:CDS |
| CATCAGGTCATATCTGACCG+AGG | 0.696941 | 3_4:-11039057 | Msa0489930:CDS |
| ATGAGAGTGAGATGCCGAGG+TGG | 0.718497 | 3_4:+11041997 | None:intergenic |
| TATAACGGGTCATAACGAAG+AGG | 0.722420 | 3_4:-11041811 | Msa0489930:CDS |
| AAAGAGGAGACAATGTACCA+AGG | 0.732791 | 3_4:-11038696 | Msa0489930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTCTTTTTTTTTTAA+CGG | + | chr3_4:11039945-11039964 | None:intergenic | 10.0% |
| !!! | TCTAATATATTTTTAAATCT+CGG | + | chr3_4:11040987-11041006 | None:intergenic | 10.0% |
| !! | TATTTATTATTATGGAAAAC+AGG | - | chr3_4:11038506-11038525 | Msa0489930:CDS | 15.0% |
| !! | ATTTATTATTATGGAAAACA+GGG | - | chr3_4:11038507-11038526 | Msa0489930:CDS | 15.0% |
| !!! | TTCTTGTTTAACAATTTTTT+GGG | - | chr3_4:11040295-11040314 | Msa0489930:intron | 15.0% |
| !!! | ATATTTTCCATTTCAAATTA+TGG | + | chr3_4:11040528-11040547 | None:intergenic | 15.0% |
| !!! | AAGTTTTTAATATCAAACAT+AGG | + | chr3_4:11040621-11040640 | None:intergenic | 15.0% |
| !! | TTTAAAAATATATTAGAGCA+TGG | - | chr3_4:11040990-11041009 | Msa0489930:intron | 15.0% |
| !!! | GTACTTTGTTTTTAATCTTT+TGG | - | chr3_4:11038214-11038233 | Msa0489930:CDS | 20.0% |
| !! | TGTAATTGTGAGAAAAAATT+CGG | - | chr3_4:11038478-11038497 | Msa0489930:CDS | 20.0% |
| !!! | TACTAAGGTTTTTTTTGATA+AGG | + | chr3_4:11039123-11039142 | None:intergenic | 20.0% |
| !! | TTAATCAAATAGAGTATAGT+TGG | - | chr3_4:11039170-11039189 | Msa0489930:intron | 20.0% |
| !!! | ATTTTTCTTACAAAAACTCT+AGG | - | chr3_4:11039193-11039212 | Msa0489930:intron | 20.0% |
| !!! | TTTATGTTTTCCTTTTTGTA+AGG | - | chr3_4:11039741-11039760 | Msa0489930:intron | 20.0% |
| !!! | TTATGTTTTCCTTTTTGTAA+GGG | - | chr3_4:11039742-11039761 | Msa0489930:intron | 20.0% |
| !!! | GTTCTTGTTTAACAATTTTT+TGG | - | chr3_4:11040294-11040313 | Msa0489930:intron | 20.0% |
| !! | TTTGATAAAAAGGAAAAGTT+GGG | + | chr3_4:11040321-11040340 | None:intergenic | 20.0% |
| !! | TGTTTGATATTAAAAACTTC+TGG | - | chr3_4:11040622-11040641 | Msa0489930:intron | 20.0% |
| !!! | GAAAGAATCTAAAATTTGAA+AGG | - | chr3_4:11040952-11040971 | Msa0489930:intron | 20.0% |
| !!! | ATATATTTTTAAATCTCGGA+CGG | + | chr3_4:11040983-11041002 | None:intergenic | 20.0% |
| !!! | AAGAATAAAATCATTTTCTG+CGG | - | chr3_4:11041613-11041632 | Msa0489930:intron | 20.0% |
| ! | TACAAAGAAGCTACAAAATT+AGG | - | chr3_4:11038192-11038211 | Msa0489930:CDS | 25.0% |
| ! | GTAATTGTGAGAAAAAATTC+GGG | - | chr3_4:11038479-11038498 | Msa0489930:CDS | 25.0% |
| ! | CGGGTAGTTATTTATTATTA+TGG | - | chr3_4:11038498-11038517 | Msa0489930:CDS | 25.0% |
| !!! | CAAATTTTGACTCTTATACA+TGG | - | chr3_4:11038658-11038677 | Msa0489930:CDS | 25.0% |
| ! | ATCAATGTAAGAAAACATGT+TGG | + | chr3_4:11038720-11038739 | None:intergenic | 25.0% |
| ! | AAGTACTTAGTACTACTAAA+CGG | - | chr3_4:11038753-11038772 | Msa0489930:CDS | 25.0% |
| ! | AAGCAATAAAATTCAAGAGA+GGG | + | chr3_4:11039093-11039112 | None:intergenic | 25.0% |
| ! | AAAGCAATAAAATTCAAGAG+AGG | + | chr3_4:11039094-11039113 | None:intergenic | 25.0% |
| ! | TTAAGATGATTTCACAGAAA+TGG | - | chr3_4:11039508-11039527 | Msa0489930:intron | 25.0% |
| !! | TATGTTTTCCTTTTTGTAAG+GGG | - | chr3_4:11039743-11039762 | Msa0489930:intron | 25.0% |
| !!! | AGAAATAGATTTGTTGATGA+TGG | - | chr3_4:11039961-11039980 | Msa0489930:intron | 25.0% |
| ! | GTTTGATAAAAAGGAAAAGT+TGG | + | chr3_4:11040322-11040341 | None:intergenic | 25.0% |
| ! | TGTGATCAAGTTTGATAAAA+AGG | + | chr3_4:11040331-11040350 | None:intergenic | 25.0% |
| !! | TTTTATCAAACTTGATCACA+CGG | - | chr3_4:11040331-11040350 | Msa0489930:intron | 25.0% |
| ! | GCTTAATTATGTCAAGAAAA+TGG | + | chr3_4:11040585-11040604 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGATTATTCCAG+AGG | - | chr3_4:11040860-11040879 | Msa0489930:intron | 25.0% |
| ! | TTTATTAACTGTTCCTTTGA+TGG | + | chr3_4:11041782-11041801 | None:intergenic | 25.0% |
| ! | ATAAAGAAGTTCAGTGTATT+TGG | - | chr3_4:11041797-11041816 | Msa0489930:CDS | 25.0% |
| ! | AAAACAGAAAGAAACATTGT+AGG | - | chr3_4:11042083-11042102 | Msa0489930:CDS | 25.0% |
| ! | AAACAGAAAGAAACATTGTA+GGG | - | chr3_4:11042084-11042103 | Msa0489930:CDS | 25.0% |
| ! | TGTTGTTGTTGTTGTTATGA+GGG | + | chr3_4:11037753-11037772 | None:intergenic | 30.0% |
| ! | TTGTTGTTGTTGTTGTTATG+AGG | + | chr3_4:11037754-11037773 | None:intergenic | 30.0% |
| ! | ATTAGCTCTCAACAAAATGT+GGG | + | chr3_4:11038251-11038270 | None:intergenic | 30.0% |
| ! | TATTAGCTCTCAACAAAATG+TGG | + | chr3_4:11038252-11038271 | None:intergenic | 30.0% |
| GTCAATATGTTAGTGTGTAT+CGG | - | chr3_4:11038370-11038389 | Msa0489930:CDS | 30.0% | |
| TCAATATGTTAGTGTGTATC+GGG | - | chr3_4:11038371-11038390 | Msa0489930:CDS | 30.0% | |
| GATAAGAGTTTAACAACATG+TGG | - | chr3_4:11038576-11038595 | Msa0489930:CDS | 30.0% | |
| !! | TTGAAATACCCTTTTTGGAA+GGG | + | chr3_4:11038807-11038826 | None:intergenic | 30.0% |
| !! | TTTGAAATACCCTTTTTGGA+AGG | + | chr3_4:11038808-11038827 | None:intergenic | 30.0% |
| !!! | TGGTTTTGAAATACCCTTTT+TGG | + | chr3_4:11038812-11038831 | None:intergenic | 30.0% |
| !!! | AACTAAGGTTCTAGAACTTT+TGG | + | chr3_4:11038832-11038851 | None:intergenic | 30.0% |
| AGACATTCTTTAGACAACTA+AGG | + | chr3_4:11038847-11038866 | None:intergenic | 30.0% | |
| AATTCGAACTCGTTCTTAAA+AGG | - | chr3_4:11038947-11038966 | Msa0489930:CDS | 30.0% | |
| !!! | TTAGGTTCTGTTTTGATTGT+TGG | - | chr3_4:11038997-11039016 | Msa0489930:CDS | 30.0% |
| ACCTTAGTACTAAACAACAA+TGG | - | chr3_4:11039134-11039153 | Msa0489930:CDS | 30.0% | |
| !! | TCCATTGTTGTTTAGTACTA+AGG | + | chr3_4:11039138-11039157 | None:intergenic | 30.0% |
| TTCTTACAAAAACTCTAGGT+TGG | - | chr3_4:11039197-11039216 | Msa0489930:intron | 30.0% | |
| ! | TATAGAGATAGATTTTGCGT+TGG | - | chr3_4:11039319-11039338 | Msa0489930:intron | 30.0% |
| ! | ATAGAGATAGATTTTGCGTT+GGG | - | chr3_4:11039320-11039339 | Msa0489930:intron | 30.0% |
| TATGGGATGTATAATTGGTT+GGG | - | chr3_4:11039350-11039369 | Msa0489930:intron | 30.0% | |
| CCATTGTACATAAATCTGAT+TGG | + | chr3_4:11039391-11039410 | None:intergenic | 30.0% | |
| CCAATCAGATTTATGTACAA+TGG | - | chr3_4:11039388-11039407 | Msa0489930:intron | 30.0% | |
| ATCGAGGAAATAAAAGAGTT+AGG | - | chr3_4:11039420-11039439 | Msa0489930:intron | 30.0% | |
| AGTCATGTCTTTACTATGAA+TGG | - | chr3_4:11039553-11039572 | Msa0489930:intron | 30.0% | |
| GTGTGTATACTTATGTATTG+AGG | - | chr3_4:11039592-11039611 | Msa0489930:intron | 30.0% | |
| TTTATCAAACTTGATCACAC+GGG | - | chr3_4:11040332-11040351 | Msa0489930:intron | 30.0% | |
| ! | TCACATACATACTCAGTTTT+GGG | + | chr3_4:11040412-11040431 | None:intergenic | 30.0% |
| ! | ATCACATACATACTCAGTTT+TGG | + | chr3_4:11040413-11040432 | None:intergenic | 30.0% |
| !! | TCTGTTATATGTTTCTAGGT+AGG | + | chr3_4:11040454-11040473 | None:intergenic | 30.0% |
| CTAGTCTGTTATATGTTTCT+AGG | + | chr3_4:11040458-11040477 | None:intergenic | 30.0% | |
| CGATCATCCATAATTTGAAA+TGG | - | chr3_4:11040518-11040537 | Msa0489930:intron | 30.0% | |
| AACTTCTGGTGTTTATCATT+AGG | - | chr3_4:11040636-11040655 | Msa0489930:intron | 30.0% | |
| ACTCATTTGGTCGATTATAT+CGG | - | chr3_4:11041086-11041105 | Msa0489930:intron | 30.0% | |
| TCTCAAGAAATACTAAACCT+AGG | - | chr3_4:11041258-11041277 | Msa0489930:intron | 30.0% | |
| AAGTATTCGAAAAGACAATC+TGG | - | chr3_4:11041313-11041332 | Msa0489930:intron | 30.0% | |
| ATCTTTCCATATCCACTTTA+TGG | + | chr3_4:11041385-11041404 | None:intergenic | 30.0% | |
| ATTCACATGTAAAAGACTGT+TGG | + | chr3_4:11041424-11041443 | None:intergenic | 30.0% | |
| ACAAGAAGCAACATATTGAT+AGG | + | chr3_4:11041663-11041682 | None:intergenic | 30.0% | |
| TCGATACCCAATTTAAAAGT+TGG | - | chr3_4:11041683-11041702 | Msa0489930:CDS | 30.0% | |
| ! | TGCTCTCCAACTTTTAAATT+GGG | + | chr3_4:11041692-11041711 | None:intergenic | 30.0% |
| ! | TTGCTCTCCAACTTTTAAAT+TGG | + | chr3_4:11041693-11041712 | None:intergenic | 30.0% |
| ATATCAATATGCCAAAAGGA+AGG | - | chr3_4:11041907-11041926 | Msa0489930:CDS | 30.0% | |
| TTTCTTCGTTTGTGTTCAAA+AGG | + | chr3_4:11041971-11041990 | None:intergenic | 30.0% | |
| !! | TTTTTCAGACATGATTTCAG+AGG | + | chr3_4:11042043-11042062 | None:intergenic | 30.0% |
| AAAATCCAATTCCTTGAAAC+AGG | - | chr3_4:11042060-11042079 | Msa0489930:CDS | 30.0% | |
| TTCGAAAAGGTGACATAGTT+TGG | - | chr3_4:11037710-11037729 | Msa0489930:CDS | 35.0% | |
| TCGAAAAGGTGACATAGTTT+GGG | - | chr3_4:11037711-11037730 | Msa0489930:CDS | 35.0% | |
| ACAACAACAACAACAACGAT+TGG | - | chr3_4:11037761-11037780 | Msa0489930:CDS | 35.0% | |
| ! | TGAAAGATGTGGTTTGGAAA+GGG | + | chr3_4:11037907-11037926 | None:intergenic | 35.0% |
| ! | TTGAAAGATGTGGTTTGGAA+AGG | + | chr3_4:11037908-11037927 | None:intergenic | 35.0% |
| TCACATTGAAAGATGTGGTT+TGG | + | chr3_4:11037913-11037932 | None:intergenic | 35.0% | |
| CAAATAACCTAAGTGCAGAA+CGG | + | chr3_4:11037942-11037961 | None:intergenic | 35.0% | |
| !! | TCAGAATTGTTTCGAGTTTG+CGG | - | chr3_4:11037965-11037984 | Msa0489930:CDS | 35.0% |
| TTTGCGGTGTCTTTGTATAA+CGG | - | chr3_4:11037981-11038000 | Msa0489930:CDS | 35.0% | |
| ACAAAACCCAAAACTCCAAT+CGG | + | chr3_4:11038057-11038076 | None:intergenic | 35.0% | |
| CTTCTTTGTAGAGTTTCTTC+TGG | + | chr3_4:11038182-11038201 | None:intergenic | 35.0% | |
| TAACGTACACTTACACTTGT+CGG | + | chr3_4:11038324-11038343 | None:intergenic | 35.0% | |
| CAATATGTTAGTGTGTATCG+GGG | - | chr3_4:11038372-11038391 | Msa0489930:CDS | 35.0% | |
| TGTGTATCGGGGTAATTATT+GGG | - | chr3_4:11038383-11038402 | Msa0489930:CDS | 35.0% | |
| ! | GGGGTAATTATTGGGAATTT+TGG | - | chr3_4:11038391-11038410 | Msa0489930:CDS | 35.0% |
| AATTTGTCTACAGACATCTG+TGG | - | chr3_4:11038534-11038553 | Msa0489930:CDS | 35.0% | |
| TACAAAGTGATAAGAGCCTA+AGG | - | chr3_4:11038603-11038622 | Msa0489930:CDS | 35.0% | |
| ! | TTTAAAGTGCCAAACTCCTT+AGG | + | chr3_4:11038622-11038641 | None:intergenic | 35.0% |
| AGTTTGGCACTTTAAACAAG+TGG | - | chr3_4:11038626-11038645 | Msa0489930:CDS | 35.0% | |
| ! | GTACTACTAAACGGATTCAA+CGG | - | chr3_4:11038762-11038781 | Msa0489930:CDS | 35.0% |
| !! | TGAAATACCCTTTTTGGAAG+GGG | + | chr3_4:11038806-11038825 | None:intergenic | 35.0% |
| ! | TTCTTTTGCTCCTGTGTAAA+AGG | - | chr3_4:11038866-11038885 | Msa0489930:CDS | 35.0% |
| ! | TCTTTTGCTCCTGTGTAAAA+GGG | - | chr3_4:11038867-11038886 | Msa0489930:CDS | 35.0% |
| TCAGCAGGAAAAAGAAGAAT+AGG | - | chr3_4:11038892-11038911 | Msa0489930:CDS | 35.0% | |
| AATAGGTTGCAACAAGCTAA+CGG | - | chr3_4:11038909-11038928 | Msa0489930:CDS | 35.0% | |
| AAGCTAGCAAAAACTGTCTT+TGG | + | chr3_4:11038979-11038998 | None:intergenic | 35.0% | |
| !! | AAGACAGTTTTTGCTAGCTT+AGG | - | chr3_4:11038979-11038998 | Msa0489930:CDS | 35.0% |
| ! | TTTGTGCAATTTTTGCACTC+TGG | - | chr3_4:11039050-11039069 | Msa0489930:CDS | 35.0% |
| ! | TAGAGATAGATTTTGCGTTG+GGG | - | chr3_4:11039321-11039340 | Msa0489930:intron | 35.0% |
| TCTGGTATGGGATGTATAAT+TGG | - | chr3_4:11039345-11039364 | Msa0489930:intron | 35.0% | |
| GTATGGGATGTATAATTGGT+TGG | - | chr3_4:11039349-11039368 | Msa0489930:intron | 35.0% | |
| !! | TAATTGGTTGGGACTTGTTT+TGG | - | chr3_4:11039361-11039380 | Msa0489930:intron | 35.0% |
| ACAATGGTTAAATCAGATCG+AGG | - | chr3_4:11039404-11039423 | Msa0489930:intron | 35.0% | |
| CATAAGTATACACACAGTGA+AGG | + | chr3_4:11039587-11039606 | None:intergenic | 35.0% | |
| TAACAACAGACAGACAATCA+AGG | + | chr3_4:11039665-11039684 | None:intergenic | 35.0% | |
| TTAATTCTGTGACCTGCTAA+GGG | - | chr3_4:11039772-11039791 | Msa0489930:intron | 35.0% | |
| !!! | ATCAGAAGTTTTAGCTACAG+TGG | - | chr3_4:11039814-11039833 | Msa0489930:intron | 35.0% |
| AGCTCCTTATCATGTCAAAA+AGG | - | chr3_4:11039991-11040010 | Msa0489930:intron | 35.0% | |
| ! | AGTGCCTTTTTGACATGATA+AGG | + | chr3_4:11039998-11040017 | None:intergenic | 35.0% |
| ! | TTATCATGTCAAAAAGGCAC+TGG | - | chr3_4:11039997-11040016 | Msa0489930:intron | 35.0% |
| AGCAAAGAAGTAGAACCATA+CGG | - | chr3_4:11040265-11040284 | Msa0489930:intron | 35.0% | |
| AAAACTCGGTTGAAATTGTG+TGG | + | chr3_4:11040389-11040408 | None:intergenic | 35.0% | |
| !!! | TACTCAGTTTTGGGAAAACT+CGG | + | chr3_4:11040403-11040422 | None:intergenic | 35.0% |
| ATGGTTAACAAACTCACAAG+TGG | + | chr3_4:11040490-11040509 | None:intergenic | 35.0% | |
| ! | ATGACCTGATGTTTTTCCTT+GGG | + | chr3_4:11040741-11040760 | None:intergenic | 35.0% |
| ! | TATGACCTGATGTTTTTCCT+TGG | + | chr3_4:11040742-11040761 | None:intergenic | 35.0% |
| CAATCTTCTTATAGCACCAA+TGG | + | chr3_4:11040790-11040809 | None:intergenic | 35.0% | |
| TTAGATTCTTTCCCCAAATG+TGG | + | chr3_4:11040944-11040963 | None:intergenic | 35.0% | |
| CATATAGTGGTTTCTATGTC+AGG | + | chr3_4:11041152-11041171 | None:intergenic | 35.0% | |
| ! | TTTTCTGTTGAGGCATATAG+TGG | + | chr3_4:11041165-11041184 | None:intergenic | 35.0% |
| TATGCCTCAACAGAAAAAGA+AGG | - | chr3_4:11041168-11041187 | Msa0489930:intron | 35.0% | |
| GGACATAAAGCATGTTTATC+TGG | + | chr3_4:11041197-11041216 | None:intergenic | 35.0% | |
| ! | GTGAAGATTATGCTAGTTTC+AGG | + | chr3_4:11041353-11041372 | None:intergenic | 35.0% |
| TAGCATAATCTTCACTGATG+AGG | - | chr3_4:11041358-11041377 | Msa0489930:intron | 35.0% | |
| CTTCCATTCTGATAATCATG+AGG | - | chr3_4:11041466-11041485 | Msa0489930:intron | 35.0% | |
| TAGCCTCATGATTATCAGAA+TGG | + | chr3_4:11041472-11041491 | None:intergenic | 35.0% | |
| !! | AGATTTTACTTTTGCTGCAC+CGG | + | chr3_4:11041498-11041517 | None:intergenic | 35.0% |
| ATCTAACTCTTCTGTTTACC+AGG | - | chr3_4:11041526-11041545 | Msa0489930:intron | 35.0% | |
| !!! | TTTATTCTTGCCGACTCTTT+TGG | + | chr3_4:11041602-11041621 | None:intergenic | 35.0% |
| TTAAAAGTTGGAGAGCAATC+AGG | - | chr3_4:11041695-11041714 | Msa0489930:CDS | 35.0% | |
| ! | ATGGTAGGTTGAAATTCTTG+GGG | + | chr3_4:11041763-11041782 | None:intergenic | 35.0% |
| ! | GATGGTAGGTTGAAATTCTT+GGG | + | chr3_4:11041764-11041783 | None:intergenic | 35.0% |
| ! | TGATGGTAGGTTGAAATTCT+TGG | + | chr3_4:11041765-11041784 | None:intergenic | 35.0% |
| GAATTTCAACCTACCATCAA+AGG | - | chr3_4:11041766-11041785 | Msa0489930:CDS | 35.0% | |
| ! | TTAACTGTTCCTTTGATGGT+AGG | + | chr3_4:11041778-11041797 | None:intergenic | 35.0% |
| ! | ACAAGTGTCTTTTGTTACAC+TGG | - | chr3_4:11041839-11041858 | Msa0489930:CDS | 35.0% |
| CTGCATATCAATATGCCAAA+AGG | - | chr3_4:11041903-11041922 | Msa0489930:CDS | 35.0% | |
| AATATGCCAAAAGGAAGGTA+TGG | - | chr3_4:11041912-11041931 | Msa0489930:CDS | 35.0% | |
| ! | GTTTTCCTGTTTCAAGGAAT+TGG | + | chr3_4:11042068-11042087 | None:intergenic | 35.0% |
| ! | CTTTCTGTTTTCCTGTTTCA+AGG | + | chr3_4:11042074-11042093 | None:intergenic | 35.0% |
| AACCTCAGATTCGACGAAAA+AGG | + | chr3_4:11037866-11037885 | None:intergenic | 40.0% | |
| GGAAAGGGAAATTCATCGAA+AGG | + | chr3_4:11037892-11037911 | None:intergenic | 40.0% | |
| ACGCTTCACATTGAAAGATG+TGG | + | chr3_4:11037918-11037937 | None:intergenic | 40.0% | |
| CGTTCTGCACTTAGGTTATT+TGG | - | chr3_4:11037940-11037959 | Msa0489930:CDS | 40.0% | |
| TTGCGGTGTCTTTGTATAAC+GGG | - | chr3_4:11037982-11038001 | Msa0489930:CDS | 40.0% | |
| !! | TATAACGGGTCATAACGAAG+AGG | - | chr3_4:11037996-11038015 | Msa0489930:CDS | 40.0% |
| ! | TTTGACCCGATTGGAGTTTT+GGG | - | chr3_4:11038048-11038067 | Msa0489930:CDS | 40.0% |
| CAAAACCCAAAACTCCAATC+GGG | + | chr3_4:11038056-11038075 | None:intergenic | 40.0% | |
| GTAGAGTTTCTTCTGGTGAA+TGG | + | chr3_4:11038175-11038194 | None:intergenic | 40.0% | |
| GTGTGTATCGGGGTAATTAT+TGG | - | chr3_4:11038382-11038401 | Msa0489930:CDS | 40.0% | |
| TGATAAGAGCCTAAGGAGTT+TGG | - | chr3_4:11038610-11038629 | Msa0489930:CDS | 40.0% | |
| GCACTTTAAACAAGTGGTCA+TGG | - | chr3_4:11038632-11038651 | Msa0489930:CDS | 40.0% | |
| TATCATCACCCCTTCCAAAA+AGG | - | chr3_4:11038795-11038814 | Msa0489930:CDS | 40.0% | |
| ATCATCACCCCTTCCAAAAA+GGG | - | chr3_4:11038796-11038815 | Msa0489930:CDS | 40.0% | |
| GCTAACGGTACAAACACAAA+TGG | - | chr3_4:11038924-11038943 | Msa0489930:CDS | 40.0% | |
| TCGAACTCGTTCTTAAAAGG+AGG | - | chr3_4:11038950-11038969 | Msa0489930:CDS | 40.0% | |
| !! | TTTTGATTGTTGGCCTGTTG+TGG | - | chr3_4:11039007-11039026 | Msa0489930:CDS | 40.0% |
| ! | AAGACAAGTATTGCCACAAC+AGG | + | chr3_4:11039023-11039042 | None:intergenic | 40.0% |
| ! | TTTTGCACTCTGGCTGTATA+AGG | - | chr3_4:11039060-11039079 | Msa0489930:CDS | 40.0% |
| TTTGCACTCTGGCTGTATAA+GGG | - | chr3_4:11039061-11039080 | Msa0489930:CDS | 40.0% | |
| ! | ACTTTTTGCACAGTCTACTC+GGG | + | chr3_4:11039536-11039555 | None:intergenic | 40.0% |
| ! | GACTTTTTGCACAGTCTACT+CGG | + | chr3_4:11039537-11039556 | None:intergenic | 40.0% |
| TTATGTATTGAGGTCTGCTG+TGG | - | chr3_4:11039602-11039621 | Msa0489930:intron | 40.0% | |
| TATGTATTGAGGTCTGCTGT+GGG | - | chr3_4:11039603-11039622 | Msa0489930:intron | 40.0% | |
| ! | GTCTGTAGTGGTTTGTGTTT+AGG | - | chr3_4:11039715-11039734 | Msa0489930:intron | 40.0% |
| GTTAATTCTGTGACCTGCTA+AGG | - | chr3_4:11039771-11039790 | Msa0489930:intron | 40.0% | |
| TAATTCTGTGACCTGCTAAG+GGG | - | chr3_4:11039773-11039792 | Msa0489930:intron | 40.0% | |
| ACAAGGATGCAGAAGAAAGA+TGG | - | chr3_4:11040039-11040058 | Msa0489930:intron | 40.0% | |
| TCTCTTGTGTAGTAATGCAG+AGG | - | chr3_4:11040073-11040092 | Msa0489930:intron | 40.0% | |
| ! | AATGCAGAGGTATGTTCATG+TGG | - | chr3_4:11040086-11040105 | Msa0489930:intron | 40.0% |
| ACAATACTGTCTTCACGAGT+AGG | - | chr3_4:11040190-11040209 | Msa0489930:intron | 40.0% | |
| AACAAGAACATGTCACCGTA+TGG | + | chr3_4:11040283-11040302 | None:intergenic | 40.0% | |
| CTCAGTTACTCGAGAATCTA+TGG | - | chr3_4:11040707-11040726 | Msa0489930:intron | 40.0% | |
| AGAACCCAAGGAAAAACATC+AGG | - | chr3_4:11040734-11040753 | Msa0489930:intron | 40.0% | |
| AGAGAATGTCCTTCCAAATC+AGG | + | chr3_4:11040825-11040844 | None:intergenic | 40.0% | |
| AAAGAGTTCAGCTTTACCAC+TGG | + | chr3_4:11040895-11040914 | None:intergenic | 40.0% | |
| CTTAAGCCCATTCCACATTT+GGG | - | chr3_4:11040929-11040948 | Msa0489930:intron | 40.0% | |
| TTAAGCCCATTCCACATTTG+GGG | - | chr3_4:11040930-11040949 | Msa0489930:intron | 40.0% | |
| TCTTTCCCCAAATGTGGAAT+GGG | + | chr3_4:11040938-11040957 | None:intergenic | 40.0% | |
| TTCTTTCCCCAAATGTGGAA+TGG | + | chr3_4:11040939-11040958 | None:intergenic | 40.0% | |
| TTCCGACTTCAAGACTCATT+TGG | - | chr3_4:11041073-11041092 | Msa0489930:intron | 40.0% | |
| GACCAAATGAGTCTTGAAGT+CGG | + | chr3_4:11041078-11041097 | None:intergenic | 40.0% | |
| GTCGATTATATCGGTGAAAG+AGG | - | chr3_4:11041095-11041114 | Msa0489930:intron | 40.0% | |
| AAAGAGGAGACAATGTACCA+AGG | - | chr3_4:11041111-11041130 | Msa0489930:intron | 40.0% | |
| ! | ATGTACCAAGGCTTTTCTCT+AGG | - | chr3_4:11041123-11041142 | Msa0489930:intron | 40.0% |
| ! | AGTTTCAGGAAAGTGTATGC+AGG | + | chr3_4:11041339-11041358 | None:intergenic | 40.0% |
| TGAGGTCCATAAAGTGGATA+TGG | - | chr3_4:11041376-11041395 | Msa0489930:intron | 40.0% | |
| GATAATCATGAGGCTAATGC+CGG | - | chr3_4:11041476-11041495 | Msa0489930:intron | 40.0% | |
| ACCTCTTAAGCCAAAAGAGT+CGG | - | chr3_4:11041589-11041608 | Msa0489930:intron | 40.0% | |
| ! | ACCAAACCATACCTTCCTTT+TGG | + | chr3_4:11041921-11041940 | None:intergenic | 40.0% |
| CAAAAGGATCTAGCCAAAAC+CGG | + | chr3_4:11041955-11041974 | None:intergenic | 40.0% | |
| !!! | GATCCTGTTAGTTTTGCTGA+GGG | + | chr3_4:11042019-11042038 | None:intergenic | 40.0% |
| !!! | TGATCCTGTTAGTTTTGCTG+AGG | + | chr3_4:11042020-11042039 | None:intergenic | 40.0% |
| !! | CAACAACAACGATTGGTCTC+CGG | - | chr3_4:11037768-11037787 | Msa0489930:CDS | 45.0% |
| CTGGAAAATGTGACCAAAGC+CGG | + | chr3_4:11037790-11037809 | None:intergenic | 45.0% | |
| !! | CACCTTTTTCGTCGAATCTG+AGG | - | chr3_4:11037861-11037880 | Msa0489930:CDS | 45.0% |
| ! | GAAGAGGAGAGGGTTTTACA+CGG | - | chr3_4:11038012-11038031 | Msa0489930:CDS | 45.0% |
| GGTTATCAGTTTGACCCGAT+TGG | - | chr3_4:11038039-11038058 | Msa0489930:CDS | 45.0% | |
| ! | GTTTGACCCGATTGGAGTTT+TGG | - | chr3_4:11038047-11038066 | Msa0489930:CDS | 45.0% |
| ! | CACTTGTCGGTTAAAAGCGT+CGG | + | chr3_4:11038311-11038330 | None:intergenic | 45.0% |
| ! | AACGGATTCAACGGATTCAG+AGG | - | chr3_4:11038771-11038790 | Msa0489930:CDS | 45.0% |
| ! | ACGGATTCAACGGATTCAGA+GGG | - | chr3_4:11038772-11038791 | Msa0489930:CDS | 45.0% |
| ! | CTGCTGAAACCCTTTTACAC+AGG | + | chr3_4:11038879-11038898 | None:intergenic | 45.0% |
| CTGTGTAAAAGGGTTTCAGC+AGG | - | chr3_4:11038877-11038896 | Msa0489930:CDS | 45.0% | |
| ! | TAGATTTTGCGTTGGGGATC+TGG | - | chr3_4:11039327-11039346 | Msa0489930:intron | 45.0% |
| CTCTAATGTGAACTGCTGTG+CGG | - | chr3_4:11039467-11039486 | Msa0489930:intron | 45.0% | |
| ATGTATTGAGGTCTGCTGTG+GGG | - | chr3_4:11039604-11039623 | Msa0489930:intron | 45.0% | |
| TCCTGAAGGACTATGGCAAA+GGG | + | chr3_4:11039689-11039708 | None:intergenic | 45.0% | |
| ATCCTGAAGGACTATGGCAA+AGG | + | chr3_4:11039690-11039709 | None:intergenic | 45.0% | |
| AACACAAACCACTACAGACC+TGG | + | chr3_4:11039714-11039733 | None:intergenic | 45.0% | |
| AACAGCTGCCCCTTACAAAA+AGG | + | chr3_4:11039754-11039773 | None:intergenic | 45.0% | |
| AATTCTGTGACCTGCTAAGG+GGG | - | chr3_4:11039774-11039793 | Msa0489930:intron | 45.0% | |
| AGGATGCAGAAGAAAGATGG+AGG | - | chr3_4:11040042-11040061 | Msa0489930:intron | 45.0% | |
| GGATGCAGAAGAAAGATGGA+GGG | - | chr3_4:11040043-11040062 | Msa0489930:intron | 45.0% | |
| GCAGTGTATCATGAGTGAAC+AGG | - | chr3_4:11040113-11040132 | Msa0489930:intron | 45.0% | |
| TACTGTCTTCACGAGTAGGA+TGG | - | chr3_4:11040194-11040213 | Msa0489930:intron | 45.0% | |
| ACTGTCTTCACGAGTAGGAT+GGG | - | chr3_4:11040195-11040214 | Msa0489930:intron | 45.0% | |
| TAGGATGGGAATGATGGCAA+AGG | - | chr3_4:11040209-11040228 | Msa0489930:intron | 45.0% | |
| AGGATGGGAATGATGGCAAA+GGG | - | chr3_4:11040210-11040229 | Msa0489930:intron | 45.0% | |
| !! | TTGGCAGGGAAGTATTGAGA+TGG | - | chr3_4:11040242-11040261 | Msa0489930:intron | 45.0% |
| ATGGATGATCGTCACAAGCA+TGG | + | chr3_4:11040509-11040528 | None:intergenic | 45.0% | |
| GAGTAGCTTCTGACTCAAAG+AGG | + | chr3_4:11040688-11040707 | None:intergenic | 45.0% | |
| ATCTATGGCGATAGAACCCA+AGG | - | chr3_4:11040722-11040741 | Msa0489930:intron | 45.0% | |
| ATCAGGTCATATCTGACCGA+GGG | - | chr3_4:11040751-11040770 | Msa0489930:intron | 45.0% | |
| ! | TGGTCATGTTTTTCTGCCCT+CGG | + | chr3_4:11040770-11040789 | None:intergenic | 45.0% |
| GGGCAGAAAAACATGACCAT+TGG | - | chr3_4:11040771-11040790 | Msa0489930:intron | 45.0% | |
| GAAGCCAACAGTTCCTGATT+TGG | - | chr3_4:11040809-11040828 | Msa0489930:intron | 45.0% | |
| CCTTCCAAATCAGGAACTGT+TGG | + | chr3_4:11040816-11040835 | None:intergenic | 45.0% | |
| !! | CCAACAGTTCCTGATTTGGA+AGG | - | chr3_4:11040813-11040832 | Msa0489930:intron | 45.0% |
| TCAGCTTTACCACTGGTAGT+TGG | + | chr3_4:11040888-11040907 | None:intergenic | 45.0% | |
| ! | CCAAATGTGGAATGGGCTTA+AGG | + | chr3_4:11040931-11040950 | None:intergenic | 45.0% |
| CCTTAAGCCCATTCCACATT+TGG | - | chr3_4:11040928-11040947 | Msa0489930:intron | 45.0% | |
| ATGAGTCTTGAAGTCGGAAG+CGG | + | chr3_4:11041072-11041091 | None:intergenic | 45.0% | |
| ! | GTCGCCTTCTTTTTCTGTTG+AGG | + | chr3_4:11041175-11041194 | None:intergenic | 45.0% |
| TCTTGAGCTCTGCAAAGTTG+AGG | + | chr3_4:11041218-11041237 | None:intergenic | 45.0% | |
| ! | GTACTGATGTGTGAGATCCT+AGG | + | chr3_4:11041278-11041297 | None:intergenic | 45.0% |
| CACTGATGAGGTCCATAAAG+TGG | - | chr3_4:11041370-11041389 | Msa0489930:intron | 45.0% | |
| TCATCTCCTAGTTTAGCGTC+TGG | - | chr3_4:11041443-11041462 | Msa0489930:intron | 45.0% | |
| ACTCTTCTGTTTACCAGGAG+AGG | - | chr3_4:11041531-11041550 | Msa0489930:intron | 45.0% | |
| ! | TTCTGCGGATCGTTTGTTAG+AGG | - | chr3_4:11041628-11041647 | Msa0489930:CDS | 45.0% |
| ! | TCTGCGGATCGTTTGTTAGA+GGG | - | chr3_4:11041629-11041648 | Msa0489930:CDS | 45.0% |
| ! | GCCAAAAGGAAGGTATGGTT+TGG | - | chr3_4:11041917-11041936 | Msa0489930:CDS | 45.0% |
| !! | AAGGTATGGTTTGGTGATGC+TGG | - | chr3_4:11041926-11041945 | Msa0489930:CDS | 45.0% |
| CATCCCTCAGCAAAACTAAC+AGG | - | chr3_4:11042013-11042032 | Msa0489930:CDS | 45.0% | |
| ! | GTCACATTTTCCAGCCACCT+CGG | - | chr3_4:11037796-11037815 | Msa0489930:CDS | 50.0% |
| AGAATGAGAGTGAGATGCCG+AGG | + | chr3_4:11037816-11037835 | None:intergenic | 50.0% | |
| ! | GACGAAAAAGGTGCGTTGTG+GGG | + | chr3_4:11037854-11037873 | None:intergenic | 50.0% |
| ! | CGACGAAAAAGGTGCGTTGT+GGG | + | chr3_4:11037855-11037874 | None:intergenic | 50.0% |
| ! | TCGACGAAAAAGGTGCGTTG+TGG | + | chr3_4:11037856-11037875 | None:intergenic | 50.0% |
| AAGCGTTCCGTTCTGCACTT+AGG | - | chr3_4:11037932-11037951 | Msa0489930:CDS | 50.0% | |
| GGGTCATAACGAAGAGGAGA+GGG | - | chr3_4:11038002-11038021 | Msa0489930:CDS | 50.0% | |
| ! | GGAGAGGGTTTTACACGGAT+CGG | - | chr3_4:11038017-11038036 | Msa0489930:CDS | 50.0% |
| ! | GAGAGGGTTTTACACGGATC+GGG | - | chr3_4:11038018-11038037 | Msa0489930:CDS | 50.0% |
| TTGATGCTGCTGTTCTGCCT+TGG | - | chr3_4:11038079-11038098 | Msa0489930:CDS | 50.0% | |
| TGATGCTGCTGTTCTGCCTT+GGG | - | chr3_4:11038080-11038099 | Msa0489930:CDS | 50.0% | |
| TTTGCGTTGGGGATCTGGTA+TGG | - | chr3_4:11039332-11039351 | Msa0489930:intron | 50.0% | |
| TTGCGTTGGGGATCTGGTAT+GGG | - | chr3_4:11039333-11039352 | Msa0489930:intron | 50.0% | |
| !! | GCTGATTGGTGGCTGTGTTT+TGG | - | chr3_4:11039633-11039652 | Msa0489930:intron | 50.0% |
| CCTGAAGGACTATGGCAAAG+GGG | + | chr3_4:11039688-11039707 | None:intergenic | 50.0% | |
| !! | CTGGTAAAGCACTGAGTCGT+AGG | - | chr3_4:11040016-11040035 | Msa0489930:intron | 50.0% |
| !! | AAGCACTGAGTCGTAGGACA+AGG | - | chr3_4:11040022-11040041 | Msa0489930:intron | 50.0% |
| TCGACAGTGTCTGTTCACTG+AGG | - | chr3_4:11040141-11040160 | Msa0489930:intron | 50.0% | |
| TCACTCTTTCAGCGATGACC+CGG | + | chr3_4:11040170-11040189 | None:intergenic | 50.0% | |
| CACGAGTAGGATGGGAATGA+TGG | - | chr3_4:11040203-11040222 | Msa0489930:intron | 50.0% | |
| ATGGGAATGATGGCAAAGGG+TGG | - | chr3_4:11040213-11040232 | Msa0489930:intron | 50.0% | |
| TGGGAATGATGGCAAAGGGT+GGG | - | chr3_4:11040214-11040233 | Msa0489930:intron | 50.0% | |
| ! | ATGATGGCAAAGGGTGGGTT+TGG | - | chr3_4:11040219-11040238 | Msa0489930:intron | 50.0% |
| CATCAGGTCATATCTGACCG+AGG | - | chr3_4:11040750-11040769 | Msa0489930:intron | 50.0% | |
| ! | ATGTGGAATGGGCTTAAGGC+AGG | + | chr3_4:11040927-11040946 | None:intergenic | 50.0% |
| GGCAACCTAGAGAAAAGCCT+TGG | + | chr3_4:11041131-11041150 | None:intergenic | 50.0% | |
| TGGAAGCCAGACGCTAAACT+AGG | + | chr3_4:11041452-11041471 | None:intergenic | 50.0% | |
| AGGCTGCAACGAAGTTGTGA+TGG | - | chr3_4:11041551-11041570 | Msa0489930:intron | 50.0% | |
| !!! | GCCGACTCTTTTGGCTTAAG+AGG | + | chr3_4:11041593-11041612 | None:intergenic | 50.0% |
| !! | TTGTTACACTGGCTCAGCTC+AGG | - | chr3_4:11041850-11041869 | Msa0489930:CDS | 50.0% |
| !! | GGTTTGGTGATGCTGGTATC+CGG | - | chr3_4:11041933-11041952 | Msa0489930:CDS | 50.0% |
| ! | GTGATGCTGGTATCCGGTTT+TGG | - | chr3_4:11041939-11041958 | Msa0489930:CDS | 50.0% |
| !! | CAACGATTGGTCTCCGGCTT+TGG | - | chr3_4:11037774-11037793 | Msa0489930:CDS | 55.0% |
| ATGAGAGTGAGATGCCGAGG+TGG | + | chr3_4:11037813-11037832 | None:intergenic | 55.0% | |
| ! | AGGTGCGTTGTGGGGTGTTA+GGG | + | chr3_4:11037846-11037865 | None:intergenic | 55.0% |
| ! | AAGGTGCGTTGTGGGGTGTT+AGG | + | chr3_4:11037847-11037866 | None:intergenic | 55.0% |
| CGGGTCATAACGAAGAGGAG+AGG | - | chr3_4:11038001-11038020 | Msa0489930:CDS | 55.0% | |
| ! | TGCTGTTCTGCCTTGGGTTG+AGG | - | chr3_4:11038086-11038105 | Msa0489930:CDS | 55.0% |
| ATTGAGGTCTGCTGTGGGGT+CGG | - | chr3_4:11039608-11039627 | Msa0489930:intron | 55.0% | |
| CCCCTTTGCCATAGTCCTTC+AGG | - | chr3_4:11039685-11039704 | Msa0489930:intron | 55.0% | |
| CCTGGCATCCTGAAGGACTA+TGG | + | chr3_4:11039696-11039715 | None:intergenic | 55.0% | |
| CCATAGTCCTTCAGGATGCC+AGG | - | chr3_4:11039693-11039712 | Msa0489930:intron | 55.0% | |
| CTACAGACCTGGCATCCTGA+AGG | + | chr3_4:11039703-11039722 | None:intergenic | 55.0% | |
| TCAGGATGCCAGGTCTGTAG+TGG | - | chr3_4:11039703-11039722 | Msa0489930:intron | 55.0% | |
| !!! | GACCTGCTAAGGGGGTGTTT+TGG | - | chr3_4:11039782-11039801 | Msa0489930:intron | 55.0% |
| CTCCAAAACACCCCCTTAGC+AGG | + | chr3_4:11039787-11039806 | None:intergenic | 55.0% | |
| TGTCTGTTCACTGAGGCCAC+CGG | - | chr3_4:11040148-11040167 | Msa0489930:intron | 55.0% | |
| ! | TGGCAAAGGGTGGGTTTGGT+TGG | - | chr3_4:11040223-11040242 | Msa0489930:intron | 55.0% |
| ! | AAAGGGTGGGTTTGGTTGGC+AGG | - | chr3_4:11040227-11040246 | Msa0489930:intron | 55.0% |
| ! | AAGGGTGGGTTTGGTTGGCA+GGG | - | chr3_4:11040228-11040247 | Msa0489930:intron | 55.0% |
| CCACTGGTAGTTGGAACCTC+TGG | + | chr3_4:11040879-11040898 | None:intergenic | 55.0% | |
| CCAGAGGTTCCAACTACCAG+TGG | - | chr3_4:11040876-11040895 | Msa0489930:intron | 55.0% | |
| AACTTCGTTGCAGCCTCTCC+TGG | + | chr3_4:11041547-11041566 | None:intergenic | 55.0% | |
| !! | TTACACTGGCTCAGCTCAGG+TGG | - | chr3_4:11041853-11041872 | Msa0489930:CDS | 55.0% |
| GCACACGAAGCCTCAACCCA+AGG | + | chr3_4:11038099-11038118 | None:intergenic | 60.0% | |
| GTCTGTTCACTGAGGCCACC+GGG | - | chr3_4:11040149-11040168 | Msa0489930:intron | 60.0% | |
| CTCTTTCAGCGATGACCCGG+TGG | + | chr3_4:11040167-11040186 | None:intergenic | 60.0% | |
| GAGTGAGATGCCGAGGTGGC+TGG | + | chr3_4:11037809-11037828 | None:intergenic | 65.0% | |
| CTGTGGGGTCGGCAGCTGAT+TGG | - | chr3_4:11039619-11039638 | Msa0489930:intron | 65.0% | |
| TGGGGTCGGCAGCTGATTGG+TGG | - | chr3_4:11039622-11039641 | Msa0489930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 11037700 | 11042129 | 11037700 | ID=Msa0489930;Name=Msa0489930 |
| chr3_4 | mRNA | 11037700 | 11042129 | 11037700 | ID=Msa0489930-mRNA-1;Parent=Msa0489930;Name=Msa0489930-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|661 |
| chr3_4 | exon | 11041616 | 11042129 | 11041616 | ID=Msa0489930-mRNA-1:exon:3505;Parent=Msa0489930-mRNA-1 |
| chr3_4 | exon | 11037700 | 11039171 | 11037700 | ID=Msa0489930-mRNA-1:exon:3504;Parent=Msa0489930-mRNA-1 |
| chr3_4 | CDS | 11041616 | 11042129 | 11041616 | ID=Msa0489930-mRNA-1:cds;Parent=Msa0489930-mRNA-1 |
| chr3_4 | CDS | 11037700 | 11039171 | 11037700 | ID=Msa0489930-mRNA-1:cds;Parent=Msa0489930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
