Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394770 | RHN65490.1 | 79.059 | 659 | 81 | 6 | 4 | 662 | 2 | 603 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394770 | A0A396IJW8 | 79.059 | 659 | 81 | 6 | 4 | 662 | 2 | 603 | 0.0 | 1033 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0394770 | Msa0489930 | 0.831904 | 1.281227e-55 | -8.615850e-47 |
| Msa0348090 | Msa0394770 | 0.901555 | 2.380584e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394770 | MtrunA17_Chr3g0080441 | 79.059 | 659 | 81 | 6 | 4 | 662 | 2 | 603 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394770 | AT1G48560.1 | 38.760 | 129 | 75 | 4 | 536 | 662 | 515 | 641 | 1.57e-15 | 80.9 |
| Msa0394770 | AT1G48560.2 | 38.760 | 129 | 75 | 4 | 536 | 662 | 534 | 660 | 1.98e-15 | 80.5 |
Find 118 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCCATATCCACTTTA+TGG | 0.076729 | 3_2:+9948137 | None:intergenic |
| TTTATTCTTGCTGACTCTTT+TGG | 0.220128 | 3_2:+9947920 | None:intergenic |
| GTTTGACCCGATTGGAGTTT+TGG | 0.222197 | 3_2:-9951494 | Msa0394770:CDS |
| ATAAAGAAGTTCAGTGTATT+TGG | 0.231819 | 3_2:-9947722 | Msa0394770:CDS |
| TTCGAAAAGGTGACATAGTT+TGG | 0.252992 | 3_2:-9951834 | Msa0394770:CDS |
| CGTTCTGCACTTAGGTTATT+TGG | 0.257181 | 3_2:-9951601 | Msa0394770:CDS |
| AAGGTGCGTTGTGGGGTGTT+AGG | 0.262813 | 3_2:+9951700 | None:intergenic |
| TTTATTAACTGTTCCTTTGA+TGG | 0.266375 | 3_2:+9947740 | None:intergenic |
| CCTTAAGCCCATTCCACATT+TGG | 0.272294 | 3_2:-9948591 | Msa0394770:CDS |
| CTTAAGCCCATTCCACATTT+GGG | 0.282277 | 3_2:-9948590 | Msa0394770:CDS |
| CTTCTTTGTAGAGTTTCTTC+TGG | 0.284374 | 3_2:+9951362 | None:intergenic |
| GTGAAGATTATGCTAGTTTC+AGG | 0.284969 | 3_2:+9948169 | None:intergenic |
| TGATGGTAGGTTGAAATTCT+TGG | 0.296686 | 3_2:+9947757 | None:intergenic |
| ACCAAACCATACCTTTCTTT+TGG | 0.308445 | 3_2:+9947601 | None:intergenic |
| TACAAAGAAGCTACAAAATT+AGG | 0.312714 | 3_2:-9951349 | Msa0394770:intron |
| GATGGTAGGTTGAAATTCTT+GGG | 0.313799 | 3_2:+9947758 | None:intergenic |
| GTGATGCTGGTATCCGGTTT+TGG | 0.330299 | 3_2:-9947580 | Msa0394770:CDS |
| CTCAGTTACTCGAGAATCTA+TGG | 0.338466 | 3_2:-9948812 | Msa0394770:CDS |
| CAACGATTGGTCTCCGGCTT+TGG | 0.345750 | 3_2:-9951770 | Msa0394770:CDS |
| AACCTCGGATTCGACGAAAA+AGG | 0.354312 | 3_2:+9951681 | None:intergenic |
| GTTCAGAAATGTAGAACAAA+TGG | 0.356017 | 3_2:+9947790 | None:intergenic |
| ACTCATTTGGTCGATTATAT+CGG | 0.361192 | 3_2:-9948433 | Msa0394770:CDS |
| GAAGCCAACAGTTCCTGATT+TGG | 0.362711 | 3_2:-9948710 | Msa0394770:CDS |
| TGAGGTCCATAAAGTGGATA+TGG | 0.363415 | 3_2:-9948143 | Msa0394770:CDS |
| TCGATACCCAATTTAAAAGT+TGG | 0.371331 | 3_2:-9947836 | Msa0394770:CDS |
| AAAATCCAATTCCTTGAAAC+AGG | 0.374502 | 3_2:-9947459 | Msa0394770:CDS |
| GGACATAAAGCATGTTTATC+TGG | 0.374770 | 3_2:+9948325 | None:intergenic |
| AGGTGCGTTGTGGGGTGTTA+GGG | 0.377797 | 3_2:+9951701 | None:intergenic |
| TTCCGACTTCAAGACTCATT+TGG | 0.383976 | 3_2:-9948446 | Msa0394770:CDS |
| AGAGAATGTCCTTCCAAATC+AGG | 0.407399 | 3_2:+9948697 | None:intergenic |
| ACAAGAAGCAACATATTGAT+AGG | 0.415947 | 3_2:+9947859 | None:intergenic |
| TTGCGGTGTCTTTGTATAAC+GGG | 0.417465 | 3_2:-9951559 | Msa0394770:CDS |
| CATCCCTCAGCAAAACTAAC+AGG | 0.420090 | 3_2:-9947506 | Msa0394770:CDS |
| TTAAAAGTTGGAGAGCAATC+AGG | 0.420947 | 3_2:-9947824 | Msa0394770:CDS |
| CCAAATGTGGAATGGGCTTA+AGG | 0.421130 | 3_2:+9948591 | None:intergenic |
| CATATAGTGGTTTCTATGTC+AGG | 0.421269 | 3_2:+9948370 | None:intergenic |
| TCGAAAAGGTGACATAGTTT+GGG | 0.422847 | 3_2:-9951833 | Msa0394770:CDS |
| TTTGCGGTGTCTTTGTATAA+CGG | 0.426012 | 3_2:-9951560 | Msa0394770:CDS |
| TTTCTTCGTTTGTGTTCAAA+AGG | 0.435082 | 3_2:+9947551 | None:intergenic |
| GTAGAGTTTCTTCTGGTGAA+TGG | 0.436827 | 3_2:+9951369 | None:intergenic |
| CCACTGGTAGTTGGAACCTC+TGG | 0.437260 | 3_2:+9948643 | None:intergenic |
| TTGTTACACTGGCTCAGCTC+AGG | 0.437997 | 3_2:-9947669 | Msa0394770:CDS |
| TCAGAATTGTTTCGAGTTTG+CGG | 0.438255 | 3_2:-9951576 | Msa0394770:CDS |
| GCCAAAAGAAAGGTATGGTT+TGG | 0.439729 | 3_2:-9947602 | Msa0394770:CDS |
| TCTTTCCCCAAATGTGGAAT+GGG | 0.445797 | 3_2:+9948584 | None:intergenic |
| ACAAAACCCAAAACTCCAAT+CGG | 0.453480 | 3_2:+9951487 | None:intergenic |
| AACTTCGTTGCAGCCTCTCC+TGG | 0.458671 | 3_2:+9947975 | None:intergenic |
| TTAACTGTTCCTTTGATGGT+AGG | 0.461756 | 3_2:+9947744 | None:intergenic |
| AAAACAGAAAGAAACATTGT+AGG | 0.465799 | 3_2:-9947436 | Msa0394770:CDS |
| AAGGTATGGTTTGGTGATGC+TGG | 0.470532 | 3_2:-9947593 | Msa0394770:CDS |
| CAAAAGGATCTAGCCAAAAC+CGG | 0.471648 | 3_2:+9947567 | None:intergenic |
| GGTTTGGTGATGCTGGTATC+CGG | 0.481359 | 3_2:-9947586 | Msa0394770:CDS |
| TTCTTTCCCCAAATGTGGAA+TGG | 0.482297 | 3_2:+9948583 | None:intergenic |
| GAGTGAGATGCCGAGGTGGC+TGG | 0.483845 | 3_2:+9951738 | None:intergenic |
| AAGTATTCGAAAAGACAATC+TGG | 0.485191 | 3_2:-9948206 | Msa0394770:CDS |
| CTGGAAGATGTGACCAAAGC+CGG | 0.488329 | 3_2:+9951757 | None:intergenic |
| GGTTATCAGTTTGACCCGAT+TGG | 0.490496 | 3_2:-9951502 | Msa0394770:CDS |
| GTCGATTATATCGGTGAAAG+AGG | 0.494744 | 3_2:-9948424 | Msa0394770:CDS |
| TTCTGCGGATCGTTTGTTAG+AGG | 0.495114 | 3_2:-9947891 | Msa0394770:CDS |
| CCTTCCAAATCAGGAACTGT+TGG | 0.502720 | 3_2:+9948706 | None:intergenic |
| ATCTAACTCTTCTGTTTACC+AGG | 0.505522 | 3_2:-9947993 | Msa0394770:CDS |
| CAATCTTCTTATAGCACCAA+TGG | 0.505651 | 3_2:+9948732 | None:intergenic |
| TTCAGAAATGTAGAACAAAT+GGG | 0.509304 | 3_2:+9947791 | None:intergenic |
| TCAGCTTTACCACTGGTAGT+TGG | 0.510578 | 3_2:+9948634 | None:intergenic |
| TAGCCTCATGATTATCAGAA+TGG | 0.511698 | 3_2:+9948050 | None:intergenic |
| GAAGGAAAGAAGCATGAGAA+AGG | 0.516021 | 3_2:-9951857 | None:intergenic |
| TCATCTCCTAGTTTAGCGTC+TGG | 0.519441 | 3_2:-9948076 | Msa0394770:CDS |
| CACTGATGAGGTCCATAAAG+TGG | 0.520491 | 3_2:-9948149 | Msa0394770:CDS |
| AAGCGTTCCGTTCTGCACTT+AGG | 0.520680 | 3_2:-9951609 | Msa0394770:CDS |
| TCTGCGGATCGTTTGTTAGA+GGG | 0.522091 | 3_2:-9947890 | Msa0394770:CDS |
| ATTCACATGTAAAAGACTGT+TGG | 0.523862 | 3_2:+9948098 | None:intergenic |
| ATGTGGAATGGGCTTAAGGC+AGG | 0.528234 | 3_2:+9948595 | None:intergenic |
| TGGAAGCCAGACGCTAAACT+AGG | 0.529369 | 3_2:+9948070 | None:intergenic |
| TGAAAGGGTAATTCATCGAA+GGG | 0.530715 | 3_2:+9951655 | None:intergenic |
| TTACACTGGCTCAGCTCAGG+TGG | 0.537648 | 3_2:-9947666 | Msa0394770:CDS |
| CAACAACAACGATTGGTCTC+CGG | 0.538740 | 3_2:-9951776 | Msa0394770:CDS |
| AAACAGAAAGAAACATTGTA+GGG | 0.540251 | 3_2:-9947435 | Msa0394770:CDS |
| TTGAAAGGGTAATTCATCGA+AGG | 0.541132 | 3_2:+9951654 | None:intergenic |
| TCTTGAGCTCTGCAAAGTTG+AGG | 0.544614 | 3_2:+9948304 | None:intergenic |
| AGCATGAGAAAGGTTCGAAA+AGG | 0.546119 | 3_2:-9951847 | Msa0394770:CDS |
| GTTGAGGCTTCGTGTACTGT+TGG | 0.546845 | 3_2:-9951439 | Msa0394770:CDS |
| GTACTGATGTGTGAGATCCT+AGG | 0.551189 | 3_2:+9948244 | None:intergenic |
| ACGGAACGCTTCACATTGAA+AGG | 0.553007 | 3_2:+9951621 | None:intergenic |
| GTCACATCTTCCAGCCACCT+CGG | 0.557130 | 3_2:-9951748 | Msa0394770:CDS |
| TTAGATTCTTTCCCCAAATG+TGG | 0.557194 | 3_2:+9948578 | None:intergenic |
| GAAAGAATCTAAAATTTGAA+AGG | 0.557568 | 3_2:-9948567 | Msa0394770:CDS |
| GGGTCATAACGAAGAGGAGA+GGG | 0.567565 | 3_2:-9951539 | Msa0394770:CDS |
| GGCAACCTAGAGAAAAGCCT+TGG | 0.571018 | 3_2:+9948391 | None:intergenic |
| GATAATCATGAGGCTAATGC+CGG | 0.573850 | 3_2:-9948043 | Msa0394770:CDS |
| ATCTATGGCGATAGAACCCA+AGG | 0.577922 | 3_2:-9948797 | Msa0394770:CDS |
| GAATTTCAACCTACCATCAA+AGG | 0.580977 | 3_2:-9947753 | Msa0394770:CDS |
| ATGAGTCTTGAAGTCGGAAG+CGG | 0.581253 | 3_2:+9948450 | None:intergenic |
| AAAGAGTTCAGCTTTACCAC+TGG | 0.582690 | 3_2:+9948627 | None:intergenic |
| ATATCAATATGCCAAAAGAA+AGG | 0.583824 | 3_2:-9947612 | Msa0394770:CDS |
| TTAAGCCCATTCCACATTTG+GGG | 0.584028 | 3_2:-9948589 | Msa0394770:CDS |
| ACTCTTCTGTTTACCAGGAG+AGG | 0.585563 | 3_2:-9947988 | Msa0394770:CDS |
| CAAAACCCAAAACTCCAATC+GGG | 0.590229 | 3_2:+9951488 | None:intergenic |
| AGTTTCAGGAAAGTGTATGC+AGG | 0.591837 | 3_2:+9948183 | None:intergenic |
| TCTCAAGAAATACTAAACCT+AGG | 0.592780 | 3_2:-9948261 | Msa0394770:CDS |
| GTACACGAAGCCTCAACCCA+AGG | 0.606275 | 3_2:+9951445 | None:intergenic |
| CCAACAGTTCCTGATTTGGA+AGG | 0.609446 | 3_2:-9948706 | Msa0394770:CDS |
| GAGTAGCATCTGACTCAAAG+AGG | 0.612627 | 3_2:+9948834 | None:intergenic |
| TTCATCGAAGGGAATAACCT+CGG | 0.618352 | 3_2:+9951666 | None:intergenic |
| AATATGCCAAAAGAAAGGTA+TGG | 0.623003 | 3_2:-9947607 | Msa0394770:CDS |
| TAGCATAATCTTCACTGATG+AGG | 0.627648 | 3_2:-9948161 | Msa0394770:CDS |
| CTTCCATTCTGATAATCATG+AGG | 0.635887 | 3_2:-9948053 | Msa0394770:CDS |
| ATGGTAGGTTGAAATTCTTG+GGG | 0.638122 | 3_2:+9947759 | None:intergenic |
| ATCAGGTCATATCTGACCGA+GGG | 0.640083 | 3_2:-9948768 | Msa0394770:CDS |
| AGGCTGCAACGAAGTTGTGA+TGG | 0.640538 | 3_2:-9947968 | Msa0394770:CDS |
| GACCAAATGAGTCTTGAAGT+CGG | 0.648590 | 3_2:+9948444 | None:intergenic |
| AGAATGAGAGTGAGATGCCG+AGG | 0.658547 | 3_2:+9951731 | None:intergenic |
| CAAATAACCTAAGTGCAGAA+CGG | 0.664388 | 3_2:+9951602 | None:intergenic |
| CCAGAGGTTCCAACTACCAG+TGG | 0.669521 | 3_2:-9948643 | Msa0394770:CDS |
| CGGGTCATAACGAAGAGGAG+AGG | 0.685231 | 3_2:-9951540 | Msa0394770:CDS |
| CATCAGGTCATATCTGACCG+AGG | 0.696941 | 3_2:-9948769 | Msa0394770:CDS |
| ATGAGAGTGAGATGCCGAGG+TGG | 0.718497 | 3_2:+9951734 | None:intergenic |
| TATAACGGGTCATAACGAAG+AGG | 0.722420 | 3_2:-9951545 | Msa0394770:CDS |
| AAAGAGGAGACAATGTACCA+AGG | 0.732791 | 3_2:-9948408 | Msa0394770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTCTTTTTTTTTTTAA+CGG | + | chr3_2:9949682-9949701 | None:intergenic | 10.0% |
| !!! | TCTAATATATTTTTAAATCT+CGG | + | chr3_2:9950724-9950743 | None:intergenic | 10.0% |
| !! | TATTTATTATTATGGAAAAC+AGG | - | chr3_2:9948239-9948258 | Msa0394770:CDS | 15.0% |
| !! | ATTTATTATTATGGAAAACA+GGG | - | chr3_2:9948240-9948259 | Msa0394770:CDS | 15.0% |
| !! | TTAATAAAATAGAGTATAGT+TGG | - | chr3_2:9948905-9948924 | Msa0394770:intron | 15.0% |
| !!! | TTCTTGTTTAACAATTTTTT+GGG | - | chr3_2:9950032-9950051 | Msa0394770:intron | 15.0% |
| !!! | ATATTTTCCATTTCAAATTA+TGG | + | chr3_2:9950265-9950284 | None:intergenic | 15.0% |
| !!! | AAGTTTTTAATATCAAACAT+AGG | + | chr3_2:9950358-9950377 | None:intergenic | 15.0% |
| !! | TTTAAAAATATATTAGAGCA+TGG | - | chr3_2:9950727-9950746 | Msa0394770:intron | 15.0% |
| !!! | GTACTTTGTTTTTAATCTTT+TGG | - | chr3_2:9947929-9947948 | Msa0394770:CDS | 20.0% |
| !! | TGTAATTGTGAGAAAAAATT+CGG | - | chr3_2:9948211-9948230 | Msa0394770:CDS | 20.0% |
| !!! | GTACTAAGTTTTTTTTGATA+AGG | + | chr3_2:9948856-9948875 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTCCTTTTTGTA+AGG | - | chr3_2:9949490-9949509 | Msa0394770:intron | 20.0% |
| !!! | TTATGTTTTCCTTTTTGTAA+GGG | - | chr3_2:9949491-9949510 | Msa0394770:intron | 20.0% |
| !!! | GTTCTTGTTTAACAATTTTT+TGG | - | chr3_2:9950031-9950050 | Msa0394770:intron | 20.0% |
| !! | TTTGATAAAAAGGAAAAGTT+GGG | + | chr3_2:9950058-9950077 | None:intergenic | 20.0% |
| !! | TGTTTGATATTAAAAACTTC+TGG | - | chr3_2:9950359-9950378 | Msa0394770:intron | 20.0% |
| !!! | GAAAGAATCTAAAATTTGAA+AGG | - | chr3_2:9950689-9950708 | Msa0394770:intron | 20.0% |
| !!! | ATATATTTTTAAATCTCGGA+CGG | + | chr3_2:9950720-9950739 | None:intergenic | 20.0% |
| !!! | AAGAATAAAATCATTTTCTG+CGG | - | chr3_2:9951350-9951369 | Msa0394770:CDS | 20.0% |
| ! | TACAAAGAAGCTACAAAATT+AGG | - | chr3_2:9947907-9947926 | Msa0394770:CDS | 25.0% |
| ! | GTAATTGTGAGAAAAAATTC+GGG | - | chr3_2:9948212-9948231 | Msa0394770:CDS | 25.0% |
| ! | CGGGTAGTTATTTATTATTA+TGG | - | chr3_2:9948231-9948250 | Msa0394770:CDS | 25.0% |
| !!! | CAAATTTTGACTCTTATACA+TGG | - | chr3_2:9948391-9948410 | Msa0394770:CDS | 25.0% |
| ! | ATCAATGTAAGAAAACATGT+TGG | + | chr3_2:9948453-9948472 | None:intergenic | 25.0% |
| ! | AAGTACTTAGTACTACTAAA+CGG | - | chr3_2:9948486-9948505 | Msa0394770:CDS | 25.0% |
| ! | AAGCAATAAAATTCAAGAGA+GGG | + | chr3_2:9948826-9948845 | None:intergenic | 25.0% |
| ! | AAAGCAATAAAATTCAAGAG+AGG | + | chr3_2:9948827-9948846 | None:intergenic | 25.0% |
| ! | TTAGTACTACTAAACAACAA+TGG | - | chr3_2:9948869-9948888 | Msa0394770:intron | 25.0% |
| !! | AATAATCCAACATAGAGTTT+TGG | + | chr3_2:9948941-9948960 | None:intergenic | 25.0% |
| ! | ATAGAGGAAATAAAAGAGTT+AGG | - | chr3_2:9949169-9949188 | Msa0394770:intron | 25.0% |
| ! | TTAAGATGATTTCACAGAAA+TGG | - | chr3_2:9949257-9949276 | Msa0394770:intron | 25.0% |
| !! | TATGTTTTCCTTTTTGTAAG+GGG | - | chr3_2:9949492-9949511 | Msa0394770:intron | 25.0% |
| !!! | AGAAATAGATTTGTTGATGA+TGG | - | chr3_2:9949699-9949718 | Msa0394770:intron | 25.0% |
| ! | GTTTGATAAAAAGGAAAAGT+TGG | + | chr3_2:9950059-9950078 | None:intergenic | 25.0% |
| ! | TGTGATCAAGTTTGATAAAA+AGG | + | chr3_2:9950068-9950087 | None:intergenic | 25.0% |
| !! | TTTTATCAAACTTGATCACA+CGG | - | chr3_2:9950068-9950087 | Msa0394770:intron | 25.0% |
| ! | GCTTAATTATGTCAAGAAAA+TGG | + | chr3_2:9950322-9950341 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGATTATTCCAG+AGG | - | chr3_2:9950597-9950616 | Msa0394770:intron | 25.0% |
| ! | TTCAGAAATGTAGAACAAAT+GGG | + | chr3_2:9951468-9951487 | None:intergenic | 25.0% |
| ! | TTTATTAACTGTTCCTTTGA+TGG | + | chr3_2:9951519-9951538 | None:intergenic | 25.0% |
| ! | ATAAAGAAGTTCAGTGTATT+TGG | - | chr3_2:9951534-9951553 | Msa0394770:CDS | 25.0% |
| ! | ATATCAATATGCCAAAAGAA+AGG | - | chr3_2:9951644-9951663 | Msa0394770:CDS | 25.0% |
| ! | AAAACAGAAAGAAACATTGT+AGG | - | chr3_2:9951820-9951839 | Msa0394770:CDS | 25.0% |
| ! | AAACAGAAAGAAACATTGTA+GGG | - | chr3_2:9951821-9951840 | Msa0394770:CDS | 25.0% |
| ! | TGTTGTTGTTGTTGTTATGA+GGG | + | chr3_2:9947465-9947484 | None:intergenic | 30.0% |
| ! | TTGTTGTTGTTGTTGTTATG+AGG | + | chr3_2:9947466-9947485 | None:intergenic | 30.0% |
| !!! | AAGGTATCGTCATTTTGAAA+GGG | + | chr3_2:9947619-9947638 | None:intergenic | 30.0% |
| !!! | AAAGGTATCGTCATTTTGAA+AGG | + | chr3_2:9947620-9947639 | None:intergenic | 30.0% |
| ! | ATTAGCTCTCAACAAAATGT+GGG | + | chr3_2:9947966-9947985 | None:intergenic | 30.0% |
| ! | TATTAGCTCTCAACAAAATG+TGG | + | chr3_2:9947967-9947986 | None:intergenic | 30.0% |
| GTCAATATGTTAGTGTGTAT+CGG | - | chr3_2:9948103-9948122 | Msa0394770:CDS | 30.0% | |
| TCAATATGTTAGTGTGTATC+GGG | - | chr3_2:9948104-9948123 | Msa0394770:CDS | 30.0% | |
| GATAAGAGTTTAACAACATG+TGG | - | chr3_2:9948309-9948328 | Msa0394770:CDS | 30.0% | |
| !! | TTGAAATACCCTTTTTGGAA+GGG | + | chr3_2:9948540-9948559 | None:intergenic | 30.0% |
| !! | TTTGAAATACCCTTTTTGGA+AGG | + | chr3_2:9948541-9948560 | None:intergenic | 30.0% |
| !!! | TGGTTTTGAAATACCCTTTT+TGG | + | chr3_2:9948545-9948564 | None:intergenic | 30.0% |
| !!! | AACTAAGGTTCTAGAACTTT+TGG | + | chr3_2:9948565-9948584 | None:intergenic | 30.0% |
| AGACATTCTTTAGACAACTA+AGG | + | chr3_2:9948580-9948599 | None:intergenic | 30.0% | |
| AATTCGAACTCGTTCTTAAA+AGG | - | chr3_2:9948680-9948699 | Msa0394770:CDS | 30.0% | |
| !!! | TTAGGTTCTGTTTTGATAGT+TGG | - | chr3_2:9948730-9948749 | Msa0394770:CDS | 30.0% |
| TTCTTACCAAAACTCTATGT+TGG | - | chr3_2:9948932-9948951 | Msa0394770:intron | 30.0% | |
| ! | TATAGAGATAGATTTTGCGT+TGG | - | chr3_2:9949068-9949087 | Msa0394770:intron | 30.0% |
| ! | ATAGAGATAGATTTTGCGTT+GGG | - | chr3_2:9949069-9949088 | Msa0394770:intron | 30.0% |
| TATGGGATGTATAATTGGTT+GGG | - | chr3_2:9949099-9949118 | Msa0394770:intron | 30.0% | |
| CCATTGTACATAAATCTGAT+TGG | + | chr3_2:9949140-9949159 | None:intergenic | 30.0% | |
| CCAATCAGATTTATGTACAA+TGG | - | chr3_2:9949137-9949156 | Msa0394770:intron | 30.0% | |
| ACAATGGTTAAATCAGATAG+AGG | - | chr3_2:9949153-9949172 | Msa0394770:intron | 30.0% | |
| AGTCATGTCTTTACTATGAA+TGG | - | chr3_2:9949302-9949321 | Msa0394770:intron | 30.0% | |
| GTGTGTATACTTATGTATTG+AGG | - | chr3_2:9949341-9949360 | Msa0394770:intron | 30.0% | |
| TTTATCAAACTTGATCACAC+GGG | - | chr3_2:9950069-9950088 | Msa0394770:intron | 30.0% | |
| TCCTACCTAGAAACATATAA+CGG | - | chr3_2:9950187-9950206 | Msa0394770:intron | 30.0% | |
| CGATCATCCATAATTTGAAA+TGG | - | chr3_2:9950255-9950274 | Msa0394770:intron | 30.0% | |
| AACTTCTGGTGTTTATCATT+AGG | - | chr3_2:9950373-9950392 | Msa0394770:intron | 30.0% | |
| ACTCATTTGGTCGATTATAT+CGG | - | chr3_2:9950823-9950842 | Msa0394770:intron | 30.0% | |
| TCTCAAGAAATACTAAACCT+AGG | - | chr3_2:9950995-9951014 | Msa0394770:intron | 30.0% | |
| AAGTATTCGAAAAGACAATC+TGG | - | chr3_2:9951050-9951069 | Msa0394770:intron | 30.0% | |
| ATCTTTCCATATCCACTTTA+TGG | + | chr3_2:9951122-9951141 | None:intergenic | 30.0% | |
| ATTCACATGTAAAAGACTGT+TGG | + | chr3_2:9951161-9951180 | None:intergenic | 30.0% | |
| !!! | TTTATTCTTGCTGACTCTTT+TGG | + | chr3_2:9951339-9951358 | None:intergenic | 30.0% |
| ACAAGAAGCAACATATTGAT+AGG | + | chr3_2:9951400-9951419 | None:intergenic | 30.0% | |
| TCGATACCCAATTTAAAAGT+TGG | - | chr3_2:9951420-9951439 | Msa0394770:CDS | 30.0% | |
| ! | TGCTCTCCAACTTTTAAATT+GGG | + | chr3_2:9951429-9951448 | None:intergenic | 30.0% |
| ! | TTGCTCTCCAACTTTTAAAT+TGG | + | chr3_2:9951430-9951449 | None:intergenic | 30.0% |
| GTTCAGAAATGTAGAACAAA+TGG | + | chr3_2:9951469-9951488 | None:intergenic | 30.0% | |
| AATATGCCAAAAGAAAGGTA+TGG | - | chr3_2:9951649-9951668 | Msa0394770:CDS | 30.0% | |
| TTTCTTCGTTTGTGTTCAAA+AGG | + | chr3_2:9951708-9951727 | None:intergenic | 30.0% | |
| !! | TTTTTCAGACATGATTTCAG+AGG | + | chr3_2:9951780-9951799 | None:intergenic | 30.0% |
| AAAATCCAATTCCTTGAAAC+AGG | - | chr3_2:9951797-9951816 | Msa0394770:CDS | 30.0% | |
| TTCGAAAAGGTGACATAGTT+TGG | - | chr3_2:9947422-9947441 | Msa0394770:CDS | 35.0% | |
| TCGAAAAGGTGACATAGTTT+GGG | - | chr3_2:9947423-9947442 | Msa0394770:CDS | 35.0% | |
| ACAACAACAACAACAACGAT+TGG | - | chr3_2:9947473-9947492 | Msa0394770:CDS | 35.0% | |
| TGAAAGGGTAATTCATCGAA+GGG | + | chr3_2:9947604-9947623 | None:intergenic | 35.0% | |
| TTGAAAGGGTAATTCATCGA+AGG | + | chr3_2:9947605-9947624 | None:intergenic | 35.0% | |
| CAAATAACCTAAGTGCAGAA+CGG | + | chr3_2:9947657-9947676 | None:intergenic | 35.0% | |
| !! | TCAGAATTGTTTCGAGTTTG+CGG | - | chr3_2:9947680-9947699 | Msa0394770:CDS | 35.0% |
| TTTGCGGTGTCTTTGTATAA+CGG | - | chr3_2:9947696-9947715 | Msa0394770:CDS | 35.0% | |
| ACAAAACCCAAAACTCCAAT+CGG | + | chr3_2:9947772-9947791 | None:intergenic | 35.0% | |
| CTTCTTTGTAGAGTTTCTTC+TGG | + | chr3_2:9947897-9947916 | None:intergenic | 35.0% | |
| CAATATGTTAGTGTGTATCG+GGG | - | chr3_2:9948105-9948124 | Msa0394770:CDS | 35.0% | |
| TGTGTATCGGGGTAATTATT+GGG | - | chr3_2:9948116-9948135 | Msa0394770:CDS | 35.0% | |
| ! | GGGGTAATTATTGGGAATTT+TGG | - | chr3_2:9948124-9948143 | Msa0394770:CDS | 35.0% |
| AATTTGTCTACAGACATCTG+TGG | - | chr3_2:9948267-9948286 | Msa0394770:CDS | 35.0% | |
| TACAAAGTGATAAGAGCCTA+AGG | - | chr3_2:9948336-9948355 | Msa0394770:CDS | 35.0% | |
| ! | TTTAAAGTGCCAAACTCCTT+AGG | + | chr3_2:9948355-9948374 | None:intergenic | 35.0% |
| AGTTTGGCACTTTAAACAAG+TGG | - | chr3_2:9948359-9948378 | Msa0394770:CDS | 35.0% | |
| ! | GTACTACTAAACGGATTCAA+CGG | - | chr3_2:9948495-9948514 | Msa0394770:CDS | 35.0% |
| !! | TGAAATACCCTTTTTGGAAG+GGG | + | chr3_2:9948539-9948558 | None:intergenic | 35.0% |
| ! | TTCTTTTGCTCCTGTGTAAA+AGG | - | chr3_2:9948599-9948618 | Msa0394770:CDS | 35.0% |
| ! | TCTTTTGCTCCTGTGTAAAA+GGG | - | chr3_2:9948600-9948619 | Msa0394770:CDS | 35.0% |
| TCAGCAGGAAAAAGAAGAAT+AGG | - | chr3_2:9948625-9948644 | Msa0394770:CDS | 35.0% | |
| AATAGGTTGCAACAAGCTAA+CGG | - | chr3_2:9948642-9948661 | Msa0394770:CDS | 35.0% | |
| AAGCTAGCAAAAACTGTCTT+TGG | + | chr3_2:9948712-9948731 | None:intergenic | 35.0% | |
| !! | AAGACAGTTTTTGCTAGCTT+AGG | - | chr3_2:9948712-9948731 | Msa0394770:CDS | 35.0% |
| ! | TTTGTGCAATTTTTGCACTC+TGG | - | chr3_2:9948783-9948802 | Msa0394770:CDS | 35.0% |
| ! | TAGAGATAGATTTTGCGTTG+GGG | - | chr3_2:9949070-9949089 | Msa0394770:intron | 35.0% |
| TCTGGTATGGGATGTATAAT+TGG | - | chr3_2:9949094-9949113 | Msa0394770:intron | 35.0% | |
| GTATGGGATGTATAATTGGT+TGG | - | chr3_2:9949098-9949117 | Msa0394770:intron | 35.0% | |
| !! | TAATTGGTTGGGACTTGTTT+TGG | - | chr3_2:9949110-9949129 | Msa0394770:intron | 35.0% |
| GTCTTTACTATGAATGGTGT+TGG | - | chr3_2:9949308-9949327 | Msa0394770:intron | 35.0% | |
| CATAAGTATACACACAGTGA+AGG | + | chr3_2:9949336-9949355 | None:intergenic | 35.0% | |
| TAACAACAGACAGACAATCA+AGG | + | chr3_2:9949414-9949433 | None:intergenic | 35.0% | |
| TTAATTCTGTGACCTGCTAA+GGG | - | chr3_2:9949521-9949540 | Msa0394770:intron | 35.0% | |
| AGCTCCTTATCATGTCAAAA+AGG | - | chr3_2:9949729-9949748 | Msa0394770:intron | 35.0% | |
| ! | AGTGCCTTTTTGACATGATA+AGG | + | chr3_2:9949736-9949755 | None:intergenic | 35.0% |
| ! | TTATCATGTCAAAAAGGCAC+TGG | - | chr3_2:9949735-9949754 | Msa0394770:intron | 35.0% |
| AGCAAAGAAGTAGAACCATA+CGG | - | chr3_2:9950002-9950021 | Msa0394770:intron | 35.0% | |
| AAAACTCGGTTGAAATTGTG+TGG | + | chr3_2:9950126-9950145 | None:intergenic | 35.0% | |
| TCACATACATACTCAGCTTT+GGG | + | chr3_2:9950149-9950168 | None:intergenic | 35.0% | |
| ATCACATACATACTCAGCTT+TGG | + | chr3_2:9950150-9950169 | None:intergenic | 35.0% | |
| !! | TCCGTTATATGTTTCTAGGT+AGG | + | chr3_2:9950191-9950210 | None:intergenic | 35.0% |
| CTAGTCCGTTATATGTTTCT+AGG | + | chr3_2:9950195-9950214 | None:intergenic | 35.0% | |
| ATGGTTAACAAACTCACAAG+TGG | + | chr3_2:9950227-9950246 | None:intergenic | 35.0% | |
| ! | ATGACCTGATGTTTTTCCTT+GGG | + | chr3_2:9950478-9950497 | None:intergenic | 35.0% |
| ! | TATGACCTGATGTTTTTCCT+TGG | + | chr3_2:9950479-9950498 | None:intergenic | 35.0% |
| CAATCTTCTTATAGCACCAA+TGG | + | chr3_2:9950527-9950546 | None:intergenic | 35.0% | |
| TTAGATTCTTTCCCCAAATG+TGG | + | chr3_2:9950681-9950700 | None:intergenic | 35.0% | |
| CATATAGTGGTTTCTATGTC+AGG | + | chr3_2:9950889-9950908 | None:intergenic | 35.0% | |
| ! | TTTTCTGTTGAGGCATATAG+TGG | + | chr3_2:9950902-9950921 | None:intergenic | 35.0% |
| TATGCCTCAACAGAAAAAGA+AGG | - | chr3_2:9950905-9950924 | Msa0394770:intron | 35.0% | |
| GGACATAAAGCATGTTTATC+TGG | + | chr3_2:9950934-9950953 | None:intergenic | 35.0% | |
| ! | GTGAAGATTATGCTAGTTTC+AGG | + | chr3_2:9951090-9951109 | None:intergenic | 35.0% |
| TAGCATAATCTTCACTGATG+AGG | - | chr3_2:9951095-9951114 | Msa0394770:intron | 35.0% | |
| CTTCCATTCTGATAATCATG+AGG | - | chr3_2:9951203-9951222 | Msa0394770:intron | 35.0% | |
| TAGCCTCATGATTATCAGAA+TGG | + | chr3_2:9951209-9951228 | None:intergenic | 35.0% | |
| !! | AGATTTTACTTTTGCTGCAC+CGG | + | chr3_2:9951235-9951254 | None:intergenic | 35.0% |
| ATCTAACTCTTCTGTTTACC+AGG | - | chr3_2:9951263-9951282 | Msa0394770:intron | 35.0% | |
| TTAAAAGTTGGAGAGCAATC+AGG | - | chr3_2:9951432-9951451 | Msa0394770:CDS | 35.0% | |
| ! | ATGGTAGGTTGAAATTCTTG+GGG | + | chr3_2:9951500-9951519 | None:intergenic | 35.0% |
| ! | GATGGTAGGTTGAAATTCTT+GGG | + | chr3_2:9951501-9951520 | None:intergenic | 35.0% |
| ! | TGATGGTAGGTTGAAATTCT+TGG | + | chr3_2:9951502-9951521 | None:intergenic | 35.0% |
| GAATTTCAACCTACCATCAA+AGG | - | chr3_2:9951503-9951522 | Msa0394770:CDS | 35.0% | |
| ! | TTAACTGTTCCTTTGATGGT+AGG | + | chr3_2:9951515-9951534 | None:intergenic | 35.0% |
| ! | ACAAGTGTCTTTTGTTACAC+TGG | - | chr3_2:9951576-9951595 | Msa0394770:CDS | 35.0% |
| ! | ACCAAACCATACCTTTCTTT+TGG | + | chr3_2:9951658-9951677 | None:intergenic | 35.0% |
| ! | GTTTTCCTGTTTCAAGGAAT+TGG | + | chr3_2:9951805-9951824 | None:intergenic | 35.0% |
| ! | CTTTCTGTTTTCCTGTTTCA+AGG | + | chr3_2:9951811-9951830 | None:intergenic | 35.0% |
| TTCATCGAAGGGAATAACCT+CGG | + | chr3_2:9947593-9947612 | None:intergenic | 40.0% | |
| CGTTCTGCACTTAGGTTATT+TGG | - | chr3_2:9947655-9947674 | Msa0394770:CDS | 40.0% | |
| TTGCGGTGTCTTTGTATAAC+GGG | - | chr3_2:9947697-9947716 | Msa0394770:CDS | 40.0% | |
| !! | TATAACGGGTCATAACGAAG+AGG | - | chr3_2:9947711-9947730 | Msa0394770:CDS | 40.0% |
| ! | TTTGACCCGATTGGAGTTTT+GGG | - | chr3_2:9947763-9947782 | Msa0394770:CDS | 40.0% |
| CAAAACCCAAAACTCCAATC+GGG | + | chr3_2:9947771-9947790 | None:intergenic | 40.0% | |
| GTAGAGTTTCTTCTGGTGAA+TGG | + | chr3_2:9947890-9947909 | None:intergenic | 40.0% | |
| ! | CACTTGTCGATTAAAAGCGT+CGG | + | chr3_2:9948021-9948040 | None:intergenic | 40.0% |
| GTGTGTATCGGGGTAATTAT+TGG | - | chr3_2:9948115-9948134 | Msa0394770:CDS | 40.0% | |
| TGATAAGAGCCTAAGGAGTT+TGG | - | chr3_2:9948343-9948362 | Msa0394770:CDS | 40.0% | |
| GCACTTTAAACAAGTGGTCA+TGG | - | chr3_2:9948365-9948384 | Msa0394770:CDS | 40.0% | |
| TATCATCACCCCTTCCAAAA+AGG | - | chr3_2:9948528-9948547 | Msa0394770:CDS | 40.0% | |
| ATCATCACCCCTTCCAAAAA+GGG | - | chr3_2:9948529-9948548 | Msa0394770:CDS | 40.0% | |
| GCTAACGGTACAAACACAAA+TGG | - | chr3_2:9948657-9948676 | Msa0394770:CDS | 40.0% | |
| TCGAACTCGTTCTTAAAAGG+AGG | - | chr3_2:9948683-9948702 | Msa0394770:CDS | 40.0% | |
| !! | TTTTGATAGTTGGCCTGTTG+TGG | - | chr3_2:9948740-9948759 | Msa0394770:CDS | 40.0% |
| ! | AAGACAAGTATTGCCACAAC+AGG | + | chr3_2:9948756-9948775 | None:intergenic | 40.0% |
| ! | TTTTGCACTCTGGCTGTATA+AGG | - | chr3_2:9948793-9948812 | Msa0394770:CDS | 40.0% |
| TTTGCACTCTGGCTGTATAA+GGG | - | chr3_2:9948794-9948813 | Msa0394770:CDS | 40.0% | |
| ! | ACTTTTTGCACAGTCTACTC+GGG | + | chr3_2:9949285-9949304 | None:intergenic | 40.0% |
| ! | GACTTTTTGCACAGTCTACT+CGG | + | chr3_2:9949286-9949305 | None:intergenic | 40.0% |
| TTATGTATTGAGGTCTGCTG+TGG | - | chr3_2:9949351-9949370 | Msa0394770:intron | 40.0% | |
| TATGTATTGAGGTCTGCTGT+GGG | - | chr3_2:9949352-9949371 | Msa0394770:intron | 40.0% | |
| ! | GTCTGTAGTGGTTTGTGTTT+AGG | - | chr3_2:9949464-9949483 | Msa0394770:intron | 40.0% |
| GTTAATTCTGTGACCTGCTA+AGG | - | chr3_2:9949520-9949539 | Msa0394770:intron | 40.0% | |
| TAATTCTGTGACCTGCTAAG+GGG | - | chr3_2:9949522-9949541 | Msa0394770:intron | 40.0% | |
| TCTCTTGTGTAGTAATGCAG+AGG | - | chr3_2:9949811-9949830 | Msa0394770:intron | 40.0% | |
| ! | AATGCAGAGGTATGTTCATG+TGG | - | chr3_2:9949824-9949843 | Msa0394770:intron | 40.0% |
| ACAATACTGTCTTCACGAGT+AGG | - | chr3_2:9949928-9949947 | Msa0394770:intron | 40.0% | |
| AACAAGAACATGTCACCGTA+TGG | + | chr3_2:9950020-9950039 | None:intergenic | 40.0% | |
| !! | TACTCAGCTTTGGGAAAACT+CGG | + | chr3_2:9950140-9950159 | None:intergenic | 40.0% |
| CTCAGTTACTCGAGAATCTA+TGG | - | chr3_2:9950444-9950463 | Msa0394770:intron | 40.0% | |
| AGAACCCAAGGAAAAACATC+AGG | - | chr3_2:9950471-9950490 | Msa0394770:intron | 40.0% | |
| AGAGAATGTCCTTCCAAATC+AGG | + | chr3_2:9950562-9950581 | None:intergenic | 40.0% | |
| AAAGAGTTCAGCTTTACCAC+TGG | + | chr3_2:9950632-9950651 | None:intergenic | 40.0% | |
| CTTAAGCCCATTCCACATTT+GGG | - | chr3_2:9950666-9950685 | Msa0394770:intron | 40.0% | |
| TTAAGCCCATTCCACATTTG+GGG | - | chr3_2:9950667-9950686 | Msa0394770:intron | 40.0% | |
| TCTTTCCCCAAATGTGGAAT+GGG | + | chr3_2:9950675-9950694 | None:intergenic | 40.0% | |
| TTCTTTCCCCAAATGTGGAA+TGG | + | chr3_2:9950676-9950695 | None:intergenic | 40.0% | |
| TTCCGACTTCAAGACTCATT+TGG | - | chr3_2:9950810-9950829 | Msa0394770:intron | 40.0% | |
| GACCAAATGAGTCTTGAAGT+CGG | + | chr3_2:9950815-9950834 | None:intergenic | 40.0% | |
| GTCGATTATATCGGTGAAAG+AGG | - | chr3_2:9950832-9950851 | Msa0394770:intron | 40.0% | |
| AAAGAGGAGACAATGTACCA+AGG | - | chr3_2:9950848-9950867 | Msa0394770:intron | 40.0% | |
| ! | ATGTACCAAGGCTTTTCTCT+AGG | - | chr3_2:9950860-9950879 | Msa0394770:intron | 40.0% |
| ! | AGTTTCAGGAAAGTGTATGC+AGG | + | chr3_2:9951076-9951095 | None:intergenic | 40.0% |
| TGAGGTCCATAAAGTGGATA+TGG | - | chr3_2:9951113-9951132 | Msa0394770:intron | 40.0% | |
| GATAATCATGAGGCTAATGC+CGG | - | chr3_2:9951213-9951232 | Msa0394770:intron | 40.0% | |
| ! | GCCAAAAGAAAGGTATGGTT+TGG | - | chr3_2:9951654-9951673 | Msa0394770:CDS | 40.0% |
| CAAAAGGATCTAGCCAAAAC+CGG | + | chr3_2:9951692-9951711 | None:intergenic | 40.0% | |
| !!! | GATCCTGTTAGTTTTGCTGA+GGG | + | chr3_2:9951756-9951775 | None:intergenic | 40.0% |
| !!! | TGATCCTGTTAGTTTTGCTG+AGG | + | chr3_2:9951757-9951776 | None:intergenic | 40.0% |
| !! | CAACAACAACGATTGGTCTC+CGG | - | chr3_2:9947480-9947499 | Msa0394770:CDS | 45.0% |
| AACCTCGGATTCGACGAAAA+AGG | + | chr3_2:9947578-9947597 | None:intergenic | 45.0% | |
| ACGGAACGCTTCACATTGAA+AGG | + | chr3_2:9947638-9947657 | None:intergenic | 45.0% | |
| ! | GAAGAGGAGAGGGTTTTACA+TGG | - | chr3_2:9947727-9947746 | Msa0394770:CDS | 45.0% |
| ! | GGAGAGGGTTTTACATGGAT+CGG | - | chr3_2:9947732-9947751 | Msa0394770:CDS | 45.0% |
| ! | GAGAGGGTTTTACATGGATC+GGG | - | chr3_2:9947733-9947752 | Msa0394770:CDS | 45.0% |
| GGTTATCAGTTTGACCCGAT+TGG | - | chr3_2:9947754-9947773 | Msa0394770:CDS | 45.0% | |
| ! | GTTTGACCCGATTGGAGTTT+TGG | - | chr3_2:9947762-9947781 | Msa0394770:CDS | 45.0% |
| !!! | TTGATGCTGCTGTTTTGCCT+TGG | - | chr3_2:9947794-9947813 | Msa0394770:CDS | 45.0% |
| !!! | TGATGCTGCTGTTTTGCCTT+GGG | - | chr3_2:9947795-9947814 | Msa0394770:CDS | 45.0% |
| ATGTTGTGTCGTGTCAGTGT+AGG | + | chr3_2:9948051-9948070 | None:intergenic | 45.0% | |
| ! | AACGGATTCAACGGATTCAG+AGG | - | chr3_2:9948504-9948523 | Msa0394770:CDS | 45.0% |
| ! | ACGGATTCAACGGATTCAGA+GGG | - | chr3_2:9948505-9948524 | Msa0394770:CDS | 45.0% |
| ! | CTGCTGAAACCCTTTTACAC+AGG | + | chr3_2:9948612-9948631 | None:intergenic | 45.0% |
| CTGTGTAAAAGGGTTTCAGC+AGG | - | chr3_2:9948610-9948629 | Msa0394770:CDS | 45.0% | |
| ! | TAGATTTTGCGTTGGGGATC+TGG | - | chr3_2:9949076-9949095 | Msa0394770:intron | 45.0% |
| CTCTAATGTGAACTGCTGTG+CGG | - | chr3_2:9949216-9949235 | Msa0394770:intron | 45.0% | |
| ATGTATTGAGGTCTGCTGTG+GGG | - | chr3_2:9949353-9949372 | Msa0394770:intron | 45.0% | |
| TCCTGAAGGACTATGGCAAA+GGG | + | chr3_2:9949438-9949457 | None:intergenic | 45.0% | |
| ATCCTGAAGGACTATGGCAA+AGG | + | chr3_2:9949439-9949458 | None:intergenic | 45.0% | |
| AACACAAACCACTACAGACC+TGG | + | chr3_2:9949463-9949482 | None:intergenic | 45.0% | |
| AACAGCTGCCCCTTACAAAA+AGG | + | chr3_2:9949503-9949522 | None:intergenic | 45.0% | |
| AATTCTGTGACCTGCTAAGG+GGG | - | chr3_2:9949523-9949542 | Msa0394770:intron | 45.0% | |
| TGGAGTAGTTGTAGCTACAG+TGG | - | chr3_2:9949551-9949570 | Msa0394770:intron | 45.0% | |
| ACAGGGATGCAGAAGAAAGA+TGG | - | chr3_2:9949777-9949796 | Msa0394770:intron | 45.0% | |
| GGATGCAGAAGAAAGATGGA+GGG | - | chr3_2:9949781-9949800 | Msa0394770:intron | 45.0% | |
| GCAGTGTATCATGAGTGAAC+AGG | - | chr3_2:9949851-9949870 | Msa0394770:intron | 45.0% | |
| TACTGTCTTCACGAGTAGGA+TGG | - | chr3_2:9949932-9949951 | Msa0394770:intron | 45.0% | |
| ACTGTCTTCACGAGTAGGAT+GGG | - | chr3_2:9949933-9949952 | Msa0394770:intron | 45.0% | |
| TAGGATGGGAATGATGGCAA+GGG | - | chr3_2:9949947-9949966 | Msa0394770:intron | 45.0% | |
| !! | TTGGCAGGGAAGTATTGAGA+TGG | - | chr3_2:9949979-9949998 | Msa0394770:intron | 45.0% |
| ATGGATGATCGTCACAAGCA+TGG | + | chr3_2:9950246-9950265 | None:intergenic | 45.0% | |
| GAGTAGCATCTGACTCAAAG+AGG | + | chr3_2:9950425-9950444 | None:intergenic | 45.0% | |
| ATCTATGGCGATAGAACCCA+AGG | - | chr3_2:9950459-9950478 | Msa0394770:intron | 45.0% | |
| ATCAGGTCATATCTGACCGA+GGG | - | chr3_2:9950488-9950507 | Msa0394770:intron | 45.0% | |
| ! | TGGTCATGTTTTTCTGCCCT+CGG | + | chr3_2:9950507-9950526 | None:intergenic | 45.0% |
| GGGCAGAAAAACATGACCAT+TGG | - | chr3_2:9950508-9950527 | Msa0394770:intron | 45.0% | |
| GAAGCCAACAGTTCCTGATT+TGG | - | chr3_2:9950546-9950565 | Msa0394770:intron | 45.0% | |
| CCTTCCAAATCAGGAACTGT+TGG | + | chr3_2:9950553-9950572 | None:intergenic | 45.0% | |
| !! | CCAACAGTTCCTGATTTGGA+AGG | - | chr3_2:9950550-9950569 | Msa0394770:intron | 45.0% |
| TCAGCTTTACCACTGGTAGT+TGG | + | chr3_2:9950625-9950644 | None:intergenic | 45.0% | |
| ! | CCAAATGTGGAATGGGCTTA+AGG | + | chr3_2:9950668-9950687 | None:intergenic | 45.0% |
| CCTTAAGCCCATTCCACATT+TGG | - | chr3_2:9950665-9950684 | Msa0394770:intron | 45.0% | |
| ATGAGTCTTGAAGTCGGAAG+CGG | + | chr3_2:9950809-9950828 | None:intergenic | 45.0% | |
| ! | GTCGCCTTCTTTTTCTGTTG+AGG | + | chr3_2:9950912-9950931 | None:intergenic | 45.0% |
| TCTTGAGCTCTGCAAAGTTG+AGG | + | chr3_2:9950955-9950974 | None:intergenic | 45.0% | |
| ! | GTACTGATGTGTGAGATCCT+AGG | + | chr3_2:9951015-9951034 | None:intergenic | 45.0% |
| CACTGATGAGGTCCATAAAG+TGG | - | chr3_2:9951107-9951126 | Msa0394770:intron | 45.0% | |
| TCATCTCCTAGTTTAGCGTC+TGG | - | chr3_2:9951180-9951199 | Msa0394770:intron | 45.0% | |
| ACTCTTCTGTTTACCAGGAG+AGG | - | chr3_2:9951268-9951287 | Msa0394770:intron | 45.0% | |
| !!! | GCTGACTCTTTTGGCTTAAG+AGG | + | chr3_2:9951330-9951349 | None:intergenic | 45.0% |
| ! | TTCTGCGGATCGTTTGTTAG+AGG | - | chr3_2:9951365-9951384 | Msa0394770:CDS | 45.0% |
| ! | TCTGCGGATCGTTTGTTAGA+GGG | - | chr3_2:9951366-9951385 | Msa0394770:CDS | 45.0% |
| !! | AAGGTATGGTTTGGTGATGC+TGG | - | chr3_2:9951663-9951682 | Msa0394770:CDS | 45.0% |
| CATCCCTCAGCAAAACTAAC+AGG | - | chr3_2:9951750-9951769 | Msa0394770:CDS | 45.0% | |
| CTGGAAGATGTGACCAAAGC+CGG | + | chr3_2:9947502-9947521 | None:intergenic | 50.0% | |
| AGAATGAGAGTGAGATGCCG+AGG | + | chr3_2:9947528-9947547 | None:intergenic | 50.0% | |
| ! | GACGAAAAAGGTGCGTTGTG+GGG | + | chr3_2:9947566-9947585 | None:intergenic | 50.0% |
| ! | CGACGAAAAAGGTGCGTTGT+GGG | + | chr3_2:9947567-9947586 | None:intergenic | 50.0% |
| ! | TCGACGAAAAAGGTGCGTTG+TGG | + | chr3_2:9947568-9947587 | None:intergenic | 50.0% |
| !! | CACCTTTTTCGTCGAATCCG+AGG | - | chr3_2:9947573-9947592 | Msa0394770:CDS | 50.0% |
| AAGCGTTCCGTTCTGCACTT+AGG | - | chr3_2:9947647-9947666 | Msa0394770:CDS | 50.0% | |
| GGGTCATAACGAAGAGGAGA+GGG | - | chr3_2:9947717-9947736 | Msa0394770:CDS | 50.0% | |
| !!! | TGCTGTTTTGCCTTGGGTTG+AGG | - | chr3_2:9947801-9947820 | Msa0394770:CDS | 50.0% |
| GTTGAGGCTTCGTGTACTGT+TGG | - | chr3_2:9947817-9947836 | Msa0394770:CDS | 50.0% | |
| TTTGCGTTGGGGATCTGGTA+TGG | - | chr3_2:9949081-9949100 | Msa0394770:intron | 50.0% | |
| TTGCGTTGGGGATCTGGTAT+GGG | - | chr3_2:9949082-9949101 | Msa0394770:intron | 50.0% | |
| !! | GCTGATTGGTGGCTGTGTTT+TGG | - | chr3_2:9949382-9949401 | Msa0394770:intron | 50.0% |
| CCTGAAGGACTATGGCAAAG+GGG | + | chr3_2:9949437-9949456 | None:intergenic | 50.0% | |
| !! | CTGGTAAAGCACTGAGTCGT+AGG | - | chr3_2:9949754-9949773 | Msa0394770:intron | 50.0% |
| !! | AAAGCACTGAGTCGTAGGAC+AGG | - | chr3_2:9949759-9949778 | Msa0394770:intron | 50.0% |
| !! | AAGCACTGAGTCGTAGGACA+GGG | - | chr3_2:9949760-9949779 | Msa0394770:intron | 50.0% |
| GGGATGCAGAAGAAAGATGG+AGG | - | chr3_2:9949780-9949799 | Msa0394770:intron | 50.0% | |
| TCGACAGTGTCTGTTCACTG+AGG | - | chr3_2:9949879-9949898 | Msa0394770:intron | 50.0% | |
| TCACTCTTTCAGCGATGACC+CGG | + | chr3_2:9949908-9949927 | None:intergenic | 50.0% | |
| CACGAGTAGGATGGGAATGA+TGG | - | chr3_2:9949941-9949960 | Msa0394770:intron | 50.0% | |
| GTAGGATGGGAATGATGGCA+AGG | - | chr3_2:9949946-9949965 | Msa0394770:intron | 50.0% | |
| ATGGGAATGATGGCAAGGGT+GGG | - | chr3_2:9949951-9949970 | Msa0394770:intron | 50.0% | |
| ! | AATGATGGCAAGGGTGGGTT+TGG | - | chr3_2:9949956-9949975 | Msa0394770:intron | 50.0% |
| CATCAGGTCATATCTGACCG+AGG | - | chr3_2:9950487-9950506 | Msa0394770:intron | 50.0% | |
| ! | ATGTGGAATGGGCTTAAGGC+AGG | + | chr3_2:9950664-9950683 | None:intergenic | 50.0% |
| GGCAACCTAGAGAAAAGCCT+TGG | + | chr3_2:9950868-9950887 | None:intergenic | 50.0% | |
| TGGAAGCCAGACGCTAAACT+AGG | + | chr3_2:9951189-9951208 | None:intergenic | 50.0% | |
| AGGCTGCAACGAAGTTGTGA+TGG | - | chr3_2:9951288-9951307 | Msa0394770:intron | 50.0% | |
| !! | TTGTTACACTGGCTCAGCTC+AGG | - | chr3_2:9951587-9951606 | Msa0394770:CDS | 50.0% |
| !! | GGTTTGGTGATGCTGGTATC+CGG | - | chr3_2:9951670-9951689 | Msa0394770:CDS | 50.0% |
| ! | GTGATGCTGGTATCCGGTTT+TGG | - | chr3_2:9951676-9951695 | Msa0394770:CDS | 50.0% |
| !! | CAACGATTGGTCTCCGGCTT+TGG | - | chr3_2:9947486-9947505 | Msa0394770:CDS | 55.0% |
| GTCACATCTTCCAGCCACCT+CGG | - | chr3_2:9947508-9947527 | Msa0394770:CDS | 55.0% | |
| ATGAGAGTGAGATGCCGAGG+TGG | + | chr3_2:9947525-9947544 | None:intergenic | 55.0% | |
| ! | AGGTGCGTTGTGGGGTGTTA+GGG | + | chr3_2:9947558-9947577 | None:intergenic | 55.0% |
| ! | AAGGTGCGTTGTGGGGTGTT+AGG | + | chr3_2:9947559-9947578 | None:intergenic | 55.0% |
| CGGGTCATAACGAAGAGGAG+AGG | - | chr3_2:9947716-9947735 | Msa0394770:CDS | 55.0% | |
| GTACACGAAGCCTCAACCCA+AGG | + | chr3_2:9947814-9947833 | None:intergenic | 55.0% | |
| ATTGAGGTCTGCTGTGGGGT+CGG | - | chr3_2:9949357-9949376 | Msa0394770:intron | 55.0% | |
| CCCCTTTGCCATAGTCCTTC+AGG | - | chr3_2:9949434-9949453 | Msa0394770:intron | 55.0% | |
| CCTGGCATCCTGAAGGACTA+TGG | + | chr3_2:9949445-9949464 | None:intergenic | 55.0% | |
| CCATAGTCCTTCAGGATGCC+AGG | - | chr3_2:9949442-9949461 | Msa0394770:intron | 55.0% | |
| CTACAGACCTGGCATCCTGA+AGG | + | chr3_2:9949452-9949471 | None:intergenic | 55.0% | |
| TCAGGATGCCAGGTCTGTAG+TGG | - | chr3_2:9949452-9949471 | Msa0394770:intron | 55.0% | |
| !!! | GACCTGCTAAGGGGGTGTTT+TGG | - | chr3_2:9949531-9949550 | Msa0394770:intron | 55.0% |
| CTCCAAAACACCCCCTTAGC+AGG | + | chr3_2:9949536-9949555 | None:intergenic | 55.0% | |
| TGTCTGTTCACTGAGGCCAC+CGG | - | chr3_2:9949886-9949905 | Msa0394770:intron | 55.0% | |
| GATGGGAATGATGGCAAGGG+TGG | - | chr3_2:9949950-9949969 | Msa0394770:intron | 55.0% | |
| ! | ATGGCAAGGGTGGGTTTGGT+TGG | - | chr3_2:9949960-9949979 | Msa0394770:intron | 55.0% |
| ! | AAGGGTGGGTTTGGTTGGCA+GGG | - | chr3_2:9949965-9949984 | Msa0394770:intron | 55.0% |
| CCACTGGTAGTTGGAACCTC+TGG | + | chr3_2:9950616-9950635 | None:intergenic | 55.0% | |
| CCAGAGGTTCCAACTACCAG+TGG | - | chr3_2:9950613-9950632 | Msa0394770:intron | 55.0% | |
| AACTTCGTTGCAGCCTCTCC+TGG | + | chr3_2:9951284-9951303 | None:intergenic | 55.0% | |
| !! | TTACACTGGCTCAGCTCAGG+TGG | - | chr3_2:9951590-9951609 | Msa0394770:CDS | 55.0% |
| GTCTGTTCACTGAGGCCACC+GGG | - | chr3_2:9949887-9949906 | Msa0394770:intron | 60.0% | |
| CTCTTTCAGCGATGACCCGG+TGG | + | chr3_2:9949905-9949924 | None:intergenic | 60.0% | |
| ! | CAAGGGTGGGTTTGGTTGGC+AGG | - | chr3_2:9949964-9949983 | Msa0394770:intron | 60.0% |
| GAGTGAGATGCCGAGGTGGC+TGG | + | chr3_2:9947521-9947540 | None:intergenic | 65.0% | |
| CTGTGGGGTCGGCAGCTGAT+TGG | - | chr3_2:9949368-9949387 | Msa0394770:intron | 65.0% | |
| TGGGGTCGGCAGCTGATTGG+TGG | - | chr3_2:9949371-9949390 | Msa0394770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 9947412 | 9951866 | 9947412 | ID=Msa0394770;Name=Msa0394770 |
| chr3_2 | mRNA | 9947412 | 9951866 | 9947412 | ID=Msa0394770-mRNA-1;Parent=Msa0394770;Name=Msa0394770-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|1|0|1|1|1|2|0|662 |
| chr3_2 | exon | 9951350 | 9951866 | 9951350 | ID=Msa0394770-mRNA-1:exon:2609;Parent=Msa0394770-mRNA-1 |
| chr3_2 | exon | 9947412 | 9948883 | 9947412 | ID=Msa0394770-mRNA-1:exon:2608;Parent=Msa0394770-mRNA-1 |
| chr3_2 | CDS | 9951350 | 9951866 | 9951350 | ID=Msa0394770-mRNA-1:cds;Parent=Msa0394770-mRNA-1 |
| chr3_2 | CDS | 9947412 | 9948883 | 9947412 | ID=Msa0394770-mRNA-1:cds;Parent=Msa0394770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
