AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492430 MtrunA17_Chr3g0091031 88.319 351 40 1 1 351 1 350 0.0 654
Msa0492430 MtrunA17_Chr3g0085081 88.319 351 40 1 1 351 1 350 0.0 653
Msa0492430 MtrunA17_Chr3g0085071 83.569 353 53 2 1 349 12 363 0.0 615
Msa0492430 MtrunA17_Chr2g0314801 55.685 343 145 4 13 349 12 353 7.19e-140 400
Msa0492430 MtrunA17_Chr3g0097891 53.474 331 150 3 22 350 23 351 5.27e-132 380
Msa0492430 MtrunA17_Chr2g0283581 55.385 325 139 5 26 349 39 358 4.53e-131 379
Msa0492430 MtrunA17_Chr2g0325481 52.941 323 150 2 28 350 47 367 1.50e-130 377
Msa0492430 MtrunA17_Chr4g0041011 53.106 322 149 2 28 349 44 363 2.07e-130 377
Msa0492430 MtrunA17_Chr4g0045941 48.974 341 168 4 11 350 16 351 6.82e-124 360
Msa0492430 MtrunA17_Chr4g0045951 51.553 322 153 3 30 350 44 363 2.72e-123 359
Msa0492430 MtrunA17_Chr5g0413851 50.621 322 154 3 31 350 42 360 1.39e-118 347
Msa0492430 MtrunA17_Chr5g0430371 46.552 348 161 5 27 350 54 400 2.24e-114 337
Msa0492430 MtrunA17_Chr2g0314791 46.286 350 164 7 13 351 11 347 1.71e-110 326
Msa0492430 MtrunA17_Chr3g0105301 44.282 341 173 5 26 350 38 377 1.99e-107 319
Msa0492430 MtrunA17_Chr1g0171171 39.818 329 178 6 31 347 53 373 1.32e-81 253
Msa0492430 MtrunA17_Chr1g0175671 36.443 343 193 5 31 350 170 510 4.87e-80 253
Msa0492430 MtrunA17_Chr7g0258851 37.318 343 190 7 31 350 248 588 1.63e-79 254
Msa0492430 MtrunA17_Chr1g0213281 36.311 347 193 8 29 350 173 516 1.02e-77 248
Msa0492430 MtrunA17_Chr7g0269991 35.714 336 198 6 31 351 137 469 3.29e-76 242
Msa0492430 MtrunA17_Chr4g0068111 35.072 345 199 8 29 350 112 454 1.08e-75 240
Msa0492430 MtrunA17_Chr1g0210771 34.734 357 207 9 7 347 34 380 7.63e-75 236
Msa0492430 MtrunA17_Chr3g0113671 36.888 347 192 9 31 351 106 451 7.50e-74 235
Msa0492430 MtrunA17_Chr4g0071391 34.111 343 201 6 30 350 108 447 1.11e-73 235
Msa0492430 MtrunA17_Chr1g0209921 47.347 245 123 5 12 253 25 266 6.13e-72 224
Msa0492430 MtrunA17_Chr4g0005491 31.298 393 228 8 1 351 17 409 1.14e-71 228
Msa0492430 MtrunA17_Chr7g0259711 35.920 348 196 6 28 350 88 433 1.35e-71 229
Msa0492430 MtrunA17_Chr2g0287901 36.286 350 197 6 25 350 91 438 7.69e-71 228
Msa0492430 MtrunA17_Chr4g0006991 34.884 344 193 9 31 347 86 425 1.40e-70 226
Msa0492430 MtrunA17_Chr8g0360521 36.416 346 188 9 31 350 71 410 1.49e-70 226
Msa0492430 MtrunA17_Chr4g0005481 36.364 341 189 9 30 346 107 443 1.99e-69 224
Msa0492430 MtrunA17_Chr3g0085101 86.842 114 15 0 216 329 1 114 3.02e-69 212
Msa0492430 MtrunA17_Chr5g0437291 35.244 349 198 9 31 351 165 513 7.11e-69 224
Msa0492430 MtrunA17_Chr3g0114101 35.345 348 192 8 31 350 89 431 1.08e-68 221
Msa0492430 MtrunA17_Chr5g0413271 32.938 337 205 6 31 350 145 477 4.04e-68 221
Msa0492430 MtrunA17_Chr3g0126021 33.623 345 193 7 30 350 128 460 1.68e-67 219
Msa0492430 MtrunA17_Chr7g0243301 32.240 366 217 8 15 351 48 411 1.24e-66 215
Msa0492430 MtrunA17_Chr8g0368461 32.486 354 203 7 31 350 178 529 1.43e-66 219
Msa0492430 MtrunA17_Chr5g0437601 33.149 362 208 10 17 350 70 425 3.20e-65 212
Msa0492430 MtrunA17_Chr7g0242701 33.621 348 200 10 27 347 82 425 6.47e-64 209
Msa0492430 MtrunA17_Chr8g0384151 29.940 334 214 6 31 350 90 417 2.49e-57 192
Msa0492430 MtrunA17_Chr1g0178081 30.178 338 170 11 30 350 54 342 4.21e-39 142
Msa0492430 MtrunA17_Chr6g0456691 28.045 353 219 9 22 345 69 415 1.50e-38 142
Msa0492430 MtrunA17_Chr6g0451321 28.490 351 208 14 30 347 115 455 3.42e-38 142
Msa0492430 MtrunA17_Chr6g0455901 28.530 347 213 11 30 345 70 412 5.42e-38 140
Msa0492430 MtrunA17_Chr6g0476041 28.532 361 203 11 31 349 167 514 5.81e-38 142
Msa0492430 MtrunA17_Chr1g0188191 29.315 365 200 14 24 345 228 577 7.44e-37 140
Msa0492430 MtrunA17_Chr8g0347321 27.429 350 222 9 31 351 95 441 1.19e-36 137
Msa0492430 MtrunA17_Chr8g0387921 28.532 361 215 11 26 351 69 421 4.94e-36 135
Msa0492430 MtrunA17_Chr6g0456681 29.096 354 211 11 25 345 58 404 2.06e-35 133
Msa0492430 MtrunA17_Chr5g0414061 29.261 352 209 14 31 349 94 438 2.14e-35 134
Msa0492430 MtrunA17_Chr2g0283851 29.722 360 203 13 30 350 53 401 3.08e-35 132
Msa0492430 MtrunA17_Chr5g0414091 29.363 361 193 14 30 345 84 427 1.68e-34 131
Msa0492430 MtrunA17_Chr4g0070341 28.736 348 213 12 30 349 131 471 2.55e-34 131
Msa0492430 MtrunA17_Chr8g0384421 28.818 347 214 12 30 349 132 472 3.98e-34 130
Msa0492430 MtrunA17_Chr5g0414051 29.178 353 201 15 31 345 75 416 7.25e-34 129
Msa0492430 MtrunA17_Chr4g0049421 27.809 356 213 13 31 351 48 394 2.05e-33 127
Msa0492430 MtrunA17_Chr3g0140371 29.945 364 203 14 20 345 7 356 2.78e-33 127
Msa0492430 MtrunA17_Chr7g0226991 28.977 352 205 12 30 345 56 398 1.02e-32 125
Msa0492430 MtrunA17_Chr8g0391481 27.654 358 212 12 31 351 27 374 5.16e-32 123
Msa0492430 MtrunA17_Chr5g0414041 29.023 348 211 10 30 345 86 429 1.67e-31 123
Msa0492430 MtrunA17_Chr7g0221291 45.918 98 53 0 22 119 70 167 7.50e-27 104
Msa0492430 MtrunA17_Chr7g0221271 38.686 137 83 1 22 158 70 205 8.41e-27 105
Msa0492430 MtrunA17_Chr5g0429211 46.512 86 45 1 77 162 186 270 1.52e-19 87.4
Msa0492430 MtrunA17_Chr1g0209931 42.045 88 46 2 265 350 9 93 8.25e-17 75.1
Msa0492430 MtrunA17_Chr2g0287911 53.125 64 22 2 23 86 54 109 4.73e-16 73.2
Msa0492430 MtrunA17_Chr2g0287931 33.036 112 62 3 92 190 3 114 6.83e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492430 AT1G29050.1 52.147 326 153 3 25 349 55 378 3.48e-135 390
Msa0492430 AT2G42570.1 52.121 330 151 4 25 351 41 366 7.91e-130 376
Msa0492430 AT2G34070.1 50.000 328 160 4 24 349 58 383 4.90e-128 372
Msa0492430 AT2G31110.2 49.850 333 159 4 23 349 32 362 1.46e-125 365
Msa0492430 AT3G14850.2 53.231 325 144 4 31 350 34 355 1.20e-123 360
Msa0492430 AT1G78710.1 48.494 332 163 6 24 351 31 358 5.15e-117 343
Msa0492430 AT2G30900.1 49.254 335 164 4 22 351 34 367 5.99e-116 341
Msa0492430 AT5G58600.1 46.686 347 159 7 25 350 60 401 1.90e-107 320
Msa0492430 AT3G14850.1 52.734 256 113 4 101 351 1 253 7.18e-92 275
Msa0492430 AT2G30010.1 40.741 351 176 7 27 350 52 397 1.38e-91 280
Msa0492430 AT2G30010.2 40.741 351 176 7 27 350 95 440 3.25e-91 280
Msa0492430 AT2G34070.2 47.012 251 129 4 101 349 1 249 1.35e-85 259
Msa0492430 AT2G31110.3 49.351 231 111 2 23 248 32 261 1.53e-83 254
Msa0492430 AT2G30900.2 52.193 228 108 1 22 248 34 261 1.85e-82 252
Msa0492430 AT3G54260.1 41.369 336 172 8 31 351 51 376 1.63e-80 251
Msa0492430 AT1G78710.2 39.458 332 140 8 24 351 24 298 1.12e-78 243
Msa0492430 AT5G58600.2 50.216 231 112 3 25 253 60 289 2.21e-78 242
Msa0492430 AT5G19160.1 37.604 359 185 9 25 350 93 445 1.21e-77 246
Msa0492430 AT2G31110.1 51.208 207 99 2 144 349 9 214 4.42e-76 234
Msa0492430 AT3G06080.2 37.822 349 189 7 25 347 97 443 8.98e-76 241
Msa0492430 AT3G62390.1 35.277 343 193 7 31 351 138 473 4.90e-75 239
Msa0492430 AT5G06700.1 36.812 345 191 7 30 350 254 595 2.75e-73 238
Msa0492430 AT5G01360.2 35.411 353 196 9 25 349 30 378 3.04e-73 232
Msa0492430 AT5G01360.1 35.411 353 196 9 25 349 86 434 1.48e-72 232
Msa0492430 AT3G12060.1 37.209 344 191 8 30 350 195 536 2.00e-72 235
Msa0492430 AT3G55990.1 35.920 348 196 8 30 351 139 485 2.49e-72 233
Msa0492430 AT5G20590.1 34.985 343 197 8 31 350 141 480 8.63e-72 231
Msa0492430 AT5G49340.1 33.718 347 203 8 29 350 98 442 2.37e-71 229
Msa0492430 AT1G60790.1 36.127 346 193 8 31 350 190 533 2.59e-71 231
Msa0492430 AT2G40150.1 34.807 362 203 8 22 351 62 422 1.05e-70 227
Msa0492430 AT1G73140.1 33.067 375 215 9 4 350 40 406 1.56e-68 221
Msa0492430 AT5G01620.2 34.402 343 192 8 31 346 110 446 1.79e-66 216
Msa0492430 AT5G01620.1 34.402 343 192 8 31 346 110 446 1.79e-66 216
Msa0492430 AT5G01620.3 34.402 343 192 8 31 346 118 454 2.42e-66 216
Msa0492430 AT2G38320.1 32.584 356 211 8 24 351 52 406 3.74e-65 212
Msa0492430 AT1G48880.1 34.545 330 192 7 31 345 115 435 9.11e-65 212
Msa0492430 AT2G40160.1 32.665 349 205 7 31 350 77 424 8.03e-64 209
Msa0492430 AT2G40320.1 33.705 359 212 9 16 350 67 423 9.98e-64 209
Msa0492430 AT2G40160.2 32.558 344 202 7 31 345 77 419 2.80e-63 208
Msa0492430 AT3G11030.1 32.961 358 209 10 20 350 96 449 3.57e-63 208
Msa0492430 AT5G06230.2 34.072 361 201 10 22 351 12 366 9.93e-61 199
Msa0492430 AT5G06230.1 34.072 361 201 10 22 351 53 407 2.65e-60 199
Msa0492430 AT3G11570.1 33.538 325 193 6 47 350 98 420 4.92e-58 194
Msa0492430 AT2G38320.2 30.841 321 194 7 58 351 4 323 3.13e-53 179
Msa0492430 AT5G19160.2 36.066 244 143 3 25 255 93 336 3.87e-53 179
Msa0492430 AT3G06080.1 35.484 248 147 3 25 259 97 344 5.86e-51 173
Msa0492430 AT3G62390.2 35.443 237 142 3 31 256 138 374 9.53e-50 172
Msa0492430 AT5G20590.2 34.874 238 140 6 31 254 141 377 1.72e-44 157
Msa0492430 AT2G40160.3 32.340 235 146 5 31 253 77 310 5.26e-41 146
Msa0492430 AT5G20680.6 30.548 347 208 12 30 349 117 457 1.29e-40 148
Msa0492430 AT3G02440.1 29.462 353 208 12 31 351 127 470 2.92e-40 148
Msa0492430 AT1G70230.1 30.904 343 195 14 31 345 79 407 3.05e-40 147
Msa0492430 AT3G02440.2 29.462 353 208 12 31 351 135 478 3.87e-40 147
Msa0492430 AT5G20680.2 30.548 347 208 12 30 349 193 533 4.07e-40 148
Msa0492430 AT5G20680.4 30.548 347 208 12 30 349 211 551 5.95e-40 148
Msa0492430 AT5G20680.1 30.548 347 208 12 30 349 211 551 5.95e-40 148
Msa0492430 AT5G20680.3 30.548 347 208 12 30 349 211 551 5.95e-40 148
Msa0492430 AT5G20680.5 30.548 347 208 12 30 349 211 551 5.95e-40 148
Msa0492430 AT4G25360.1 29.609 358 205 11 31 349 175 524 1.53e-38 144
Msa0492430 AT4G25360.2 29.609 358 205 11 31 349 175 524 1.53e-38 144
Msa0492430 AT5G06230.3 31.783 258 157 4 22 260 53 310 2.37e-38 139
Msa0492430 AT5G51640.1 29.867 375 183 13 31 349 138 488 2.46e-37 140
Msa0492430 AT1G01430.1 28.571 378 225 12 12 351 79 449 4.09e-37 139
Msa0492430 AT5G64020.1 29.526 359 206 14 31 349 57 408 4.21e-37 138
Msa0492430 AT4G01080.1 28.371 356 224 10 22 351 82 432 4.63e-37 139
Msa0492430 AT5G15890.1 28.367 349 199 11 31 345 187 518 5.07e-37 140
Msa0492430 AT3G28150.1 28.571 350 212 12 30 349 69 410 1.08e-36 137
Msa0492430 AT5G64470.3 29.480 346 213 13 31 350 55 395 1.81e-36 136
Msa0492430 AT2G14530.1 25.926 351 226 10 29 349 60 406 1.04e-35 134
Msa0492430 AT5G64470.2 29.462 353 210 14 31 350 55 401 3.92e-35 132
Msa0492430 AT5G15900.1 27.887 355 218 11 26 349 62 409 1.25e-34 132
Msa0492430 AT5G15900.2 27.887 355 218 11 26 349 81 428 1.63e-34 132
Msa0492430 AT4G23790.1 25.833 360 219 12 31 351 79 429 2.99e-31 122
Msa0492430 AT4G11090.1 24.789 355 227 10 31 351 79 427 2.79e-29 117
Msa0492430 AT2G37720.1 26.997 363 200 14 30 349 142 482 3.11e-29 117
Msa0492430 AT5G64470.4 28.287 251 159 10 31 263 55 302 2.25e-21 93.6
Msa0492430 AT5G64470.1 28.287 251 159 10 31 263 55 302 3.06e-21 93.2

Find 82 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTTATATGAAGGTAAA+TGG 0.144730 3_4:+16136128 Msa0492430:CDS
TGTCCACCATACTACATATT+TGG 0.191068 3_4:+16137163 Msa0492430:CDS
TCCACCTCCGCATGAATATT+AGG 0.213031 3_4:-16136193 None:intergenic
GTTTGACAACTTGGGCTAAC+TGG 0.222113 3_4:+16137878 Msa0492430:CDS
GGGAAACAAATCATGTTTAT+TGG 0.227481 3_4:+16136900 Msa0492430:CDS
AGAATCTCATTCCAAGTATC+TGG 0.234480 3_4:-16138325 None:intergenic
GAGGATGATGATCCATTTAT+TGG 0.265663 3_4:-16138130 None:intergenic
CCCTTAAAAGTGGAAACTTA+TGG 0.284695 3_4:+16137231 Msa0492430:CDS
ATGGAAACAAATGGATGTTT+TGG 0.288048 3_4:+16137250 Msa0492430:CDS
GATTGCAATGGTAATTTCTA+TGG 0.290902 3_4:+16136066 Msa0492430:CDS
AACATATAAGTGATTGCTTT+TGG 0.292562 3_4:-16136941 None:intergenic
AAAGAGACAACACCAATAAA+TGG 0.296590 3_4:+16138118 Msa0492430:CDS
TATGGCAATTTGTCTCAGTT+TGG 0.303071 3_4:+16136084 Msa0492430:CDS
AGATGGGATTATATTCAAAT+AGG 0.339635 3_4:+16137808 Msa0492430:intron
TGTCAACCAAATATGTAGTA+TGG 0.352414 3_4:-16137169 None:intergenic
ATGGCAATTTGTCTCAGTTT+GGG 0.359503 3_4:+16136085 Msa0492430:CDS
TGTACTCATTGGTGTATAGC+TGG 0.359692 3_4:+16138298 Msa0492430:CDS
CCACCTCCGCATGAATATTA+GGG 0.377714 3_4:-16136192 None:intergenic
TTTGCACAGTTTCTCACTCC+TGG 0.378147 3_4:-16138097 None:intergenic
CTCAGTTTGGGAGAAACTAA+TGG 0.381599 3_4:+16136097 Msa0492430:CDS
AGCTAGAGTGGCAATACAAC+AGG 0.396762 3_4:+16136986 Msa0492430:CDS
TTAAAACTGGTTTGACAACT+TGG 0.405966 3_4:+16137869 Msa0492430:CDS
GGTGTTGAAATGAGGGTATA+TGG 0.419213 3_4:+16136040 Msa0492430:CDS
CAATTTATATGAAGGTAAAT+GGG 0.420155 3_4:+16136129 Msa0492430:CDS
ATCATTGTTTGCAGATTTGA+CGG 0.425810 3_4:+16136852 Msa0492430:intron
AAACTTGATTCCCTTAAAAG+TGG 0.426399 3_4:+16137221 Msa0492430:CDS
AGCAATACCTCAAATATAGA+TGG 0.427954 3_4:+16136242 Msa0492430:CDS
CCCTAATATTCATGCGGAGG+TGG 0.441787 3_4:+16136192 Msa0492430:CDS
GTACTCATTGGTGTATAGCT+GGG 0.447522 3_4:+16138299 Msa0492430:CDS
AATTCCTTGGAAAAGAACTT+TGG 0.449770 3_4:-16137929 None:intergenic
GTTGAGAAGATGAACAGGTT+TGG 0.455264 3_4:-16138206 None:intergenic
TTGGTTGCCATCTATATTTG+AGG 0.458874 3_4:-16136249 None:intergenic
TAGCTGGGGTCCCAGATACT+TGG 0.460087 3_4:+16138314 Msa0492430:CDS
CTTGGTAAGTTACAATTGCT+TGG 0.464025 3_4:-16136268 None:intergenic
TGGAAACTTATGGAAACAAA+TGG 0.464711 3_4:+16137241 Msa0492430:CDS
GGGAGTTGCAATTTATATGA+AGG 0.466490 3_4:+16136121 Msa0492430:CDS
AAGTTTCTTGACAAAATTCA+AGG 0.473355 3_4:+16136878 Msa0492430:CDS
CTATCAGAATTGAGAAAAGA+TGG 0.474952 3_4:+16138238 Msa0492430:CDS
AGTGCATAGGAGAAATTCCT+TGG 0.480916 3_4:-16137942 None:intergenic
TCATAATGGCTTCCATGGAA+TGG 0.483362 3_4:+16138273 Msa0492430:CDS
GTAATGTTGAGAAGATGAAC+AGG 0.485962 3_4:-16138211 None:intergenic
GTAAGATGGGTGTTGAAATG+AGG 0.489941 3_4:+16136032 None:intergenic
TAAGATGGGTGTTGAAATGA+GGG 0.492973 3_4:+16136033 None:intergenic
GAGGTGGATTGCTTGAAATA+TGG 0.494649 3_4:+16136208 Msa0492430:CDS
GGACATCCTAGTTCTCATAA+TGG 0.495737 3_4:+16138259 Msa0492430:CDS
TTTGACAACTTGGGCTAACT+GGG 0.496516 3_4:+16137879 Msa0492430:CDS
TAAAACTGGTTTGACAACTT+GGG 0.497394 3_4:+16137870 Msa0492430:CDS
TTGAAATGAGGGTATATGGT+TGG 0.503656 3_4:+16136044 Msa0492430:CDS
AGTGAAAGACATGGACCGTA+TGG 0.508219 3_4:+16137840 Msa0492430:CDS
TGGCTTTGGTGGTACCGTAC+AGG 0.509591 3_4:+16137284 Msa0492430:CDS
GAAGATTTCATACGGTTGCA+TGG 0.516539 3_4:-16137309 None:intergenic
AGTTCTCATAATGGCTTCCA+TGG 0.517269 3_4:+16138268 Msa0492430:CDS
TGGAAGCCATTATGAGAACT+AGG 0.528138 3_4:-16138265 None:intergenic
AATGAGTACAATCCATTCCA+TGG 0.540802 3_4:-16138285 None:intergenic
GGAGCACAATGGAATAAGCC+AGG 0.543103 3_4:+16138079 Msa0492430:CDS
AAGATTTCATACGGTTGCAT+GGG 0.544442 3_4:-16137308 None:intergenic
ATATTTGGTTGACATTGAAG+TGG 0.551858 3_4:+16137178 Msa0492430:CDS
ATGGAATGGATTGTACTCAT+TGG 0.554481 3_4:+16138287 Msa0492430:CDS
GAATCTCATTCCAAGTATCT+GGG 0.556440 3_4:-16138324 None:intergenic
TGCTGTACCACAAGCTAGAG+TGG 0.560239 3_4:+16136974 Msa0492430:CDS
CAAGTTGAAGAATCATAAAG+AGG 0.563730 3_4:-16136169 None:intergenic
TACTCATTGGTGTATAGCTG+GGG 0.567739 3_4:+16138300 Msa0492430:CDS
AGTTTCTTGACAAAATTCAA+GGG 0.568216 3_4:+16136879 Msa0492430:CDS
ACGGTTGCATGGGTCCTGTA+CGG 0.580463 3_4:-16137298 None:intergenic
CATCGTCAACTACACATACC+TGG 0.586486 3_4:+16137019 Msa0492430:CDS
GTTTCTTGACAAAATTCAAG+GGG 0.601197 3_4:+16136880 Msa0492430:CDS
AGGTATGTGTAGTTGACGAT+GGG 0.605865 3_4:-16137017 None:intergenic
CAGGTATGTGTAGTTGACGA+TGG 0.609161 3_4:-16137018 None:intergenic
CAACCAAATATGTAGTATGG+TGG 0.614963 3_4:-16137166 None:intergenic
AACTTGCCCTAATATTCATG+CGG 0.616389 3_4:+16136186 Msa0492430:CDS
AAAACTCACTTGTAGTGCAT+AGG 0.622218 3_4:-16137955 None:intergenic
CAAGCAATTGTAACTTACCA+AGG 0.624087 3_4:+16136269 Msa0492430:CDS
TGTATTGCCACTCTAGCTTG+TGG 0.627252 3_4:-16136981 None:intergenic
TTGCCCTAATATTCATGCGG+AGG 0.642327 3_4:+16136189 Msa0492430:CDS
GTTTGGGAGAAACTAATGGA+GGG 0.656700 3_4:+16136101 Msa0492430:CDS
GGTATATGGTTGGATTGCAA+TGG 0.658393 3_4:+16136054 Msa0492430:CDS
TGCTGGTGGCAATCCTTGTG+AGG 0.667152 3_4:-16138149 None:intergenic
TGCAATACATATGATGCTGG+TGG 0.667597 3_4:-16138163 None:intergenic
AATGGATCATCATCCTCACA+AGG 0.672955 3_4:+16138136 Msa0492430:CDS
AGTTTGGGAGAAACTAATGG+AGG 0.673082 3_4:+16136100 Msa0492430:CDS
TAACAAAATAGTGAAAGACA+TGG 0.690112 3_4:+16137831 Msa0492430:CDS
GCTAGAGTGGCAATACAACA+GGG 0.692668 3_4:+16136987 Msa0492430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATATCAATTTTACA+TGG - chr3_4:16136465-16136484 None:intergenic 10.0%
!! AATCTCAAAATATATATATA+TGG - chr3_4:16136669-16136688 None:intergenic 10.0%
!!! AATTAATTTTTGTTACATTT+TGG + chr3_4:16136720-16136739 Msa0492430:intron 10.0%
!!! AATTAATTTTTGTTACATTT+TGG + chr3_4:16136720-16136739 Msa0492430:intron 10.0%
!!! ATTTATTTAATTTTGTAAGA+TGG - chr3_4:16137068-16137087 None:intergenic 10.0%
!!! TTTTTTTTTTTTAAGGAAAA+TGG - chr3_4:16137761-16137780 None:intergenic 10.0%
!!! ATTTTAATATCAATTTTACA+TGG - chr3_4:16136465-16136484 None:intergenic 10.0%
!! AATCTCAAAATATATATATA+TGG - chr3_4:16136669-16136688 None:intergenic 10.0%
!!! AATTAATTTTTGTTACATTT+TGG + chr3_4:16136720-16136739 Msa0492430:intron 10.0%
!!! AATTAATTTTTGTTACATTT+TGG + chr3_4:16136720-16136739 Msa0492430:intron 10.0%
!!! ATTTATTTAATTTTGTAAGA+TGG - chr3_4:16137068-16137087 None:intergenic 10.0%
!!! TTTTTTTTTTTTAAGGAAAA+TGG - chr3_4:16137761-16137780 None:intergenic 10.0%
!! AATTAATTATATGATCACAA+TGG - chr3_4:16136747-16136766 None:intergenic 15.0%
!!! GTTTTTATCGTAAAATTTAA+CGG - chr3_4:16136822-16136841 None:intergenic 15.0%
!!! ATTTTTCATTTTGTTTATCA+AGG + chr3_4:16137437-16137456 Msa0492430:intron 15.0%
!!! GCATTACTTTTTTTTTTTTA+AGG - chr3_4:16137768-16137787 None:intergenic 15.0%
!! AATTAATTATATGATCACAA+TGG - chr3_4:16136747-16136766 None:intergenic 15.0%
!!! GTTTTTATCGTAAAATTTAA+CGG - chr3_4:16136822-16136841 None:intergenic 15.0%
!!! ATTTTTCATTTTGTTTATCA+AGG + chr3_4:16137437-16137456 Msa0492430:intron 15.0%
!!! GCATTACTTTTTTTTTTTTA+AGG - chr3_4:16137768-16137787 None:intergenic 15.0%
!! CAATTTATATGAAGGTAAAT+GGG + chr3_4:16136129-16136148 Msa0492430:CDS 20.0%
!! AGTTTAATTAAATTGTACCT+TGG - chr3_4:16136289-16136308 None:intergenic 20.0%
!!! GTTTTATAGAAGATTTCATA+CGG - chr3_4:16137320-16137339 None:intergenic 20.0%
!!! TTAAGAAGCTTTTGTTTTTT+TGG - chr3_4:16137543-16137562 None:intergenic 20.0%
!!! ATTTTGGCGATTTATTAAAA+AGG + chr3_4:16137675-16137694 Msa0492430:intron 20.0%
!!! TACTTGTTAGCTATTATAAA+TGG - chr3_4:16137732-16137751 None:intergenic 20.0%
!!! TTATATTTTTCTATTGCAGA+TGG + chr3_4:16137791-16137810 Msa0492430:intron 20.0%
!!! TATATTTTTCTATTGCAGAT+GGG + chr3_4:16137792-16137811 Msa0492430:intron 20.0%
!!! GCACAATTTTAATTAAAAGT+GGG - chr3_4:16137992-16138011 None:intergenic 20.0%
!! TAATAAAACCATATGAACAA+AGG - chr3_4:16138014-16138033 None:intergenic 20.0%
!! ATTTGTGCATTTAAAAATAG+TGG + chr3_4:16138058-16138077 Msa0492430:intron 20.0%
!! CAATTTATATGAAGGTAAAT+GGG + chr3_4:16136129-16136148 Msa0492430:CDS 20.0%
!! AGTTTAATTAAATTGTACCT+TGG - chr3_4:16136289-16136308 None:intergenic 20.0%
!!! GTTTTATAGAAGATTTCATA+CGG - chr3_4:16137320-16137339 None:intergenic 20.0%
!!! TTAAGAAGCTTTTGTTTTTT+TGG - chr3_4:16137543-16137562 None:intergenic 20.0%
!!! ATTTTGGCGATTTATTAAAA+AGG + chr3_4:16137675-16137694 Msa0492430:intron 20.0%
!!! TACTTGTTAGCTATTATAAA+TGG - chr3_4:16137732-16137751 None:intergenic 20.0%
!!! TTATATTTTTCTATTGCAGA+TGG + chr3_4:16137791-16137810 Msa0492430:intron 20.0%
!!! TATATTTTTCTATTGCAGAT+GGG + chr3_4:16137792-16137811 Msa0492430:intron 20.0%
!!! GCACAATTTTAATTAAAAGT+GGG - chr3_4:16137992-16138011 None:intergenic 20.0%
!! TAATAAAACCATATGAACAA+AGG - chr3_4:16138014-16138033 None:intergenic 20.0%
!! ATTTGTGCATTTAAAAATAG+TGG + chr3_4:16138058-16138077 Msa0492430:intron 20.0%
! GCAATTTATATGAAGGTAAA+TGG + chr3_4:16136128-16136147 Msa0492430:CDS 25.0%
! CTCAAATTAATTGTTGAGAT+TGG + chr3_4:16136499-16136518 Msa0492430:intron 25.0%
! TAATCGCTTAAATATGTCAT+TGG + chr3_4:16136629-16136648 Msa0492430:intron 25.0%
! TATCGTAAAATTTAACGGAA+TGG - chr3_4:16136817-16136836 None:intergenic 25.0%
! AAGTTTCTTGACAAAATTCA+AGG + chr3_4:16136878-16136897 Msa0492430:CDS 25.0%
! AGTTTCTTGACAAAATTCAA+GGG + chr3_4:16136879-16136898 Msa0492430:CDS 25.0%
!! AACATATAAGTGATTGCTTT+TGG - chr3_4:16136944-16136963 None:intergenic 25.0%
!! TACAATTTCAATACTTTTCC+AGG + chr3_4:16137121-16137140 Msa0492430:intron 25.0%
! AAGCTTCTTAAATATTGTCA+TGG + chr3_4:16137552-16137571 Msa0492430:intron 25.0%
! TAAGAGGGTTAAACAAAAAT+TGG - chr3_4:16137644-16137663 None:intergenic 25.0%
! AAATCATCATGGAAATAAGA+GGG - chr3_4:16137659-16137678 None:intergenic 25.0%
! AAAATCATCATGGAAATAAG+AGG - chr3_4:16137660-16137679 None:intergenic 25.0%
!!! TCTTATTTCCATGATGATTT+TGG + chr3_4:16137659-16137678 Msa0492430:intron 25.0%
! AGATGGGATTATATTCAAAT+AGG + chr3_4:16137808-16137827 Msa0492430:intron 25.0%
! TAACAAAATAGTGAAAGACA+TGG + chr3_4:16137831-16137850 Msa0492430:CDS 25.0%
!!! GGCACAATTTTAATTAAAAG+TGG - chr3_4:16137993-16138012 None:intergenic 25.0%
! GCAATTTATATGAAGGTAAA+TGG + chr3_4:16136128-16136147 Msa0492430:CDS 25.0%
! CTCAAATTAATTGTTGAGAT+TGG + chr3_4:16136499-16136518 Msa0492430:intron 25.0%
! TAATCGCTTAAATATGTCAT+TGG + chr3_4:16136629-16136648 Msa0492430:intron 25.0%
! TATCGTAAAATTTAACGGAA+TGG - chr3_4:16136817-16136836 None:intergenic 25.0%
! AAGTTTCTTGACAAAATTCA+AGG + chr3_4:16136878-16136897 Msa0492430:CDS 25.0%
! AGTTTCTTGACAAAATTCAA+GGG + chr3_4:16136879-16136898 Msa0492430:CDS 25.0%
!! AACATATAAGTGATTGCTTT+TGG - chr3_4:16136944-16136963 None:intergenic 25.0%
!! TACAATTTCAATACTTTTCC+AGG + chr3_4:16137121-16137140 Msa0492430:intron 25.0%
! AAGCTTCTTAAATATTGTCA+TGG + chr3_4:16137552-16137571 Msa0492430:intron 25.0%
! TAAGAGGGTTAAACAAAAAT+TGG - chr3_4:16137644-16137663 None:intergenic 25.0%
! AAATCATCATGGAAATAAGA+GGG - chr3_4:16137659-16137678 None:intergenic 25.0%
! AAAATCATCATGGAAATAAG+AGG - chr3_4:16137660-16137679 None:intergenic 25.0%
!!! TCTTATTTCCATGATGATTT+TGG + chr3_4:16137659-16137678 Msa0492430:intron 25.0%
! AGATGGGATTATATTCAAAT+AGG + chr3_4:16137808-16137827 Msa0492430:intron 25.0%
! TAACAAAATAGTGAAAGACA+TGG + chr3_4:16137831-16137850 Msa0492430:CDS 25.0%
!!! GGCACAATTTTAATTAAAAG+TGG - chr3_4:16137993-16138012 None:intergenic 25.0%
GATTGCAATGGTAATTTCTA+TGG + chr3_4:16136066-16136085 Msa0492430:CDS 30.0%
! CAAGTTGAAGAATCATAAAG+AGG - chr3_4:16136172-16136191 None:intergenic 30.0%
AGCAATACCTCAAATATAGA+TGG + chr3_4:16136242-16136261 Msa0492430:CDS 30.0%
TACAACTTAACGTGTGTTTA+TGG + chr3_4:16136355-16136374 Msa0492430:intron 30.0%
ACAACTTAACGTGTGTTTAT+GGG + chr3_4:16136356-16136375 Msa0492430:intron 30.0%
TGTTTATGGGGAAGATAATT+TGG + chr3_4:16136369-16136388 Msa0492430:intron 30.0%
!! TAATTTGGTGTTGTTACAAC+AGG + chr3_4:16136384-16136403 Msa0492430:intron 30.0%
CAGATTCTCTGTTGTAAAAA+AGG - chr3_4:16136545-16136564 None:intergenic 30.0%
!!! TCCTTGCACTTTTTTTTGTT+TGG + chr3_4:16136691-16136710 Msa0492430:intron 30.0%
! ACCAAACAAAAAAAAGTGCA+AGG - chr3_4:16136695-16136714 None:intergenic 30.0%
GGTTAACAGAGATGAATTAA+TGG - chr3_4:16136786-16136805 None:intergenic 30.0%
! TTTAACGGAATGGATTTACT+TGG - chr3_4:16136807-16136826 None:intergenic 30.0%
ATCATTGTTTGCAGATTTGA+CGG + chr3_4:16136852-16136871 Msa0492430:intron 30.0%
GTTTCTTGACAAAATTCAAG+GGG + chr3_4:16136880-16136899 Msa0492430:CDS 30.0%
GGGAAACAAATCATGTTTAT+TGG + chr3_4:16136900-16136919 Msa0492430:CDS 30.0%
! AAGATGGTTTGTGATGAAAT+AGG - chr3_4:16137052-16137071 None:intergenic 30.0%
TGTCAACCAAATATGTAGTA+TGG - chr3_4:16137172-16137191 None:intergenic 30.0%
ATATTTGGTTGACATTGAAG+TGG + chr3_4:16137178-16137197 Msa0492430:CDS 30.0%
GACATTGAAGTGGAAAAAAT+TGG + chr3_4:16137188-16137207 Msa0492430:CDS 30.0%
AAACTTGATTCCCTTAAAAG+TGG + chr3_4:16137221-16137240 Msa0492430:CDS 30.0%
!! CCATAAGTTTCCACTTTTAA+GGG - chr3_4:16137234-16137253 None:intergenic 30.0%
!! TCCATAAGTTTCCACTTTTA+AGG - chr3_4:16137235-16137254 None:intergenic 30.0%
TGGAAACTTATGGAAACAAA+TGG + chr3_4:16137241-16137260 Msa0492430:CDS 30.0%
! ATGGAAACAAATGGATGTTT+TGG + chr3_4:16137250-16137269 Msa0492430:CDS 30.0%
!!! ATGTTTTGGTTTTCAACACT+TGG + chr3_4:16137264-16137283 Msa0492430:CDS 30.0%
GATTTAGAAAGCAAGTGTAT+CGG + chr3_4:16137470-16137489 Msa0492430:intron 30.0%
ATAAATCGCCAAAATCATCA+TGG - chr3_4:16137670-16137689 None:intergenic 30.0%
!!! CAGTTTTAAAAGCTTCCATA+CGG - chr3_4:16137858-16137877 None:intergenic 30.0%
!! TTAAAACTGGTTTGACAACT+TGG + chr3_4:16137869-16137888 Msa0492430:CDS 30.0%
!! TAAAACTGGTTTGACAACTT+GGG + chr3_4:16137870-16137889 Msa0492430:CDS 30.0%
! AAAACCAAAGTTCTTTTCCA+AGG + chr3_4:16137925-16137944 Msa0492430:CDS 30.0%
AATTCCTTGGAAAAGAACTT+TGG - chr3_4:16137932-16137951 None:intergenic 30.0%
AAATTGTGCCTTTGTTCATA+TGG + chr3_4:16138003-16138022 Msa0492430:intron 30.0%
! TTAAAAATAGTGGAGCACAA+TGG + chr3_4:16138068-16138087 Msa0492430:intron 30.0%
AAAGAGACAACACCAATAAA+TGG + chr3_4:16138118-16138137 Msa0492430:CDS 30.0%
! TTTTGCAATACATATGATGC+TGG - chr3_4:16138169-16138188 None:intergenic 30.0%
CTATCAGAATTGAGAAAAGA+TGG + chr3_4:16138238-16138257 Msa0492430:CDS 30.0%
GATTGCAATGGTAATTTCTA+TGG + chr3_4:16136066-16136085 Msa0492430:CDS 30.0%
! CAAGTTGAAGAATCATAAAG+AGG - chr3_4:16136172-16136191 None:intergenic 30.0%
AGCAATACCTCAAATATAGA+TGG + chr3_4:16136242-16136261 Msa0492430:CDS 30.0%
TACAACTTAACGTGTGTTTA+TGG + chr3_4:16136355-16136374 Msa0492430:intron 30.0%
ACAACTTAACGTGTGTTTAT+GGG + chr3_4:16136356-16136375 Msa0492430:intron 30.0%
TGTTTATGGGGAAGATAATT+TGG + chr3_4:16136369-16136388 Msa0492430:intron 30.0%
!! TAATTTGGTGTTGTTACAAC+AGG + chr3_4:16136384-16136403 Msa0492430:intron 30.0%
CAGATTCTCTGTTGTAAAAA+AGG - chr3_4:16136545-16136564 None:intergenic 30.0%
!!! TCCTTGCACTTTTTTTTGTT+TGG + chr3_4:16136691-16136710 Msa0492430:intron 30.0%
! ACCAAACAAAAAAAAGTGCA+AGG - chr3_4:16136695-16136714 None:intergenic 30.0%
GGTTAACAGAGATGAATTAA+TGG - chr3_4:16136786-16136805 None:intergenic 30.0%
! TTTAACGGAATGGATTTACT+TGG - chr3_4:16136807-16136826 None:intergenic 30.0%
ATCATTGTTTGCAGATTTGA+CGG + chr3_4:16136852-16136871 Msa0492430:intron 30.0%
GTTTCTTGACAAAATTCAAG+GGG + chr3_4:16136880-16136899 Msa0492430:CDS 30.0%
GGGAAACAAATCATGTTTAT+TGG + chr3_4:16136900-16136919 Msa0492430:CDS 30.0%
! AAGATGGTTTGTGATGAAAT+AGG - chr3_4:16137052-16137071 None:intergenic 30.0%
TGTCAACCAAATATGTAGTA+TGG - chr3_4:16137172-16137191 None:intergenic 30.0%
ATATTTGGTTGACATTGAAG+TGG + chr3_4:16137178-16137197 Msa0492430:CDS 30.0%
GACATTGAAGTGGAAAAAAT+TGG + chr3_4:16137188-16137207 Msa0492430:CDS 30.0%
AAACTTGATTCCCTTAAAAG+TGG + chr3_4:16137221-16137240 Msa0492430:CDS 30.0%
!! CCATAAGTTTCCACTTTTAA+GGG - chr3_4:16137234-16137253 None:intergenic 30.0%
!! TCCATAAGTTTCCACTTTTA+AGG - chr3_4:16137235-16137254 None:intergenic 30.0%
TGGAAACTTATGGAAACAAA+TGG + chr3_4:16137241-16137260 Msa0492430:CDS 30.0%
! ATGGAAACAAATGGATGTTT+TGG + chr3_4:16137250-16137269 Msa0492430:CDS 30.0%
!!! ATGTTTTGGTTTTCAACACT+TGG + chr3_4:16137264-16137283 Msa0492430:CDS 30.0%
GATTTAGAAAGCAAGTGTAT+CGG + chr3_4:16137470-16137489 Msa0492430:intron 30.0%
ATAAATCGCCAAAATCATCA+TGG - chr3_4:16137670-16137689 None:intergenic 30.0%
!!! CAGTTTTAAAAGCTTCCATA+CGG - chr3_4:16137858-16137877 None:intergenic 30.0%
!! TTAAAACTGGTTTGACAACT+TGG + chr3_4:16137869-16137888 Msa0492430:CDS 30.0%
!! TAAAACTGGTTTGACAACTT+GGG + chr3_4:16137870-16137889 Msa0492430:CDS 30.0%
! AAAACCAAAGTTCTTTTCCA+AGG + chr3_4:16137925-16137944 Msa0492430:CDS 30.0%
AATTCCTTGGAAAAGAACTT+TGG - chr3_4:16137932-16137951 None:intergenic 30.0%
AAATTGTGCCTTTGTTCATA+TGG + chr3_4:16138003-16138022 Msa0492430:intron 30.0%
! TTAAAAATAGTGGAGCACAA+TGG + chr3_4:16138068-16138087 Msa0492430:intron 30.0%
AAAGAGACAACACCAATAAA+TGG + chr3_4:16138118-16138137 Msa0492430:CDS 30.0%
! TTTTGCAATACATATGATGC+TGG - chr3_4:16138169-16138188 None:intergenic 30.0%
CTATCAGAATTGAGAAAAGA+TGG + chr3_4:16138238-16138257 Msa0492430:CDS 30.0%
! TTGAAATGAGGGTATATGGT+TGG + chr3_4:16136044-16136063 Msa0492430:CDS 35.0%
TATGGCAATTTGTCTCAGTT+TGG + chr3_4:16136084-16136103 Msa0492430:CDS 35.0%
ATGGCAATTTGTCTCAGTTT+GGG + chr3_4:16136085-16136104 Msa0492430:CDS 35.0%
GGGAGTTGCAATTTATATGA+AGG + chr3_4:16136121-16136140 Msa0492430:CDS 35.0%
AACTTGCCCTAATATTCATG+CGG + chr3_4:16136186-16136205 Msa0492430:CDS 35.0%
TTGGTTGCCATCTATATTTG+AGG - chr3_4:16136252-16136271 None:intergenic 35.0%
CTTGGTAAGTTACAATTGCT+TGG - chr3_4:16136271-16136290 None:intergenic 35.0%
CAAGCAATTGTAACTTACCA+AGG + chr3_4:16136269-16136288 Msa0492430:CDS 35.0%
CAACTTAACGTGTGTTTATG+GGG + chr3_4:16136357-16136376 Msa0492430:intron 35.0%
ACACGACACTCATTATGATA+AGG - chr3_4:16136591-16136610 None:intergenic 35.0%
! TCAATACTTTTCCAGGACTA+TGG + chr3_4:16137128-16137147 Msa0492430:intron 35.0%
TAATTGAAACTCCATAGTCC+TGG - chr3_4:16137142-16137161 None:intergenic 35.0%
TGTCCACCATACTACATATT+TGG + chr3_4:16137163-16137182 Msa0492430:CDS 35.0%
CAACCAAATATGTAGTATGG+TGG - chr3_4:16137169-16137188 None:intergenic 35.0%
CCCTTAAAAGTGGAAACTTA+TGG + chr3_4:16137231-16137250 Msa0492430:CDS 35.0%
AAGATTTCATACGGTTGCAT+GGG - chr3_4:16137311-16137330 None:intergenic 35.0%
!!! CGTATGGAAGCTTTTAAAAC+TGG + chr3_4:16137856-16137875 Msa0492430:CDS 35.0%
AAAACTCACTTGTAGTGCAT+AGG - chr3_4:16137958-16137977 None:intergenic 35.0%
GAGGATGATGATCCATTTAT+TGG - chr3_4:16138133-16138152 None:intergenic 35.0%
GTAATGTTGAGAAGATGAAC+AGG - chr3_4:16138214-16138233 None:intergenic 35.0%
AATGAGTACAATCCATTCCA+TGG - chr3_4:16138288-16138307 None:intergenic 35.0%
!! ATGGAATGGATTGTACTCAT+TGG + chr3_4:16138287-16138306 Msa0492430:CDS 35.0%
GAATCTCATTCCAAGTATCT+GGG - chr3_4:16138327-16138346 None:intergenic 35.0%
AGAATCTCATTCCAAGTATC+TGG - chr3_4:16138328-16138347 None:intergenic 35.0%
! TTGAAATGAGGGTATATGGT+TGG + chr3_4:16136044-16136063 Msa0492430:CDS 35.0%
TATGGCAATTTGTCTCAGTT+TGG + chr3_4:16136084-16136103 Msa0492430:CDS 35.0%
ATGGCAATTTGTCTCAGTTT+GGG + chr3_4:16136085-16136104 Msa0492430:CDS 35.0%
GGGAGTTGCAATTTATATGA+AGG + chr3_4:16136121-16136140 Msa0492430:CDS 35.0%
AACTTGCCCTAATATTCATG+CGG + chr3_4:16136186-16136205 Msa0492430:CDS 35.0%
TTGGTTGCCATCTATATTTG+AGG - chr3_4:16136252-16136271 None:intergenic 35.0%
CTTGGTAAGTTACAATTGCT+TGG - chr3_4:16136271-16136290 None:intergenic 35.0%
CAAGCAATTGTAACTTACCA+AGG + chr3_4:16136269-16136288 Msa0492430:CDS 35.0%
CAACTTAACGTGTGTTTATG+GGG + chr3_4:16136357-16136376 Msa0492430:intron 35.0%
ACACGACACTCATTATGATA+AGG - chr3_4:16136591-16136610 None:intergenic 35.0%
! TCAATACTTTTCCAGGACTA+TGG + chr3_4:16137128-16137147 Msa0492430:intron 35.0%
TAATTGAAACTCCATAGTCC+TGG - chr3_4:16137142-16137161 None:intergenic 35.0%
TGTCCACCATACTACATATT+TGG + chr3_4:16137163-16137182 Msa0492430:CDS 35.0%
CAACCAAATATGTAGTATGG+TGG - chr3_4:16137169-16137188 None:intergenic 35.0%
CCCTTAAAAGTGGAAACTTA+TGG + chr3_4:16137231-16137250 Msa0492430:CDS 35.0%
AAGATTTCATACGGTTGCAT+GGG - chr3_4:16137311-16137330 None:intergenic 35.0%
!!! CGTATGGAAGCTTTTAAAAC+TGG + chr3_4:16137856-16137875 Msa0492430:CDS 35.0%
AAAACTCACTTGTAGTGCAT+AGG - chr3_4:16137958-16137977 None:intergenic 35.0%
GAGGATGATGATCCATTTAT+TGG - chr3_4:16138133-16138152 None:intergenic 35.0%
GTAATGTTGAGAAGATGAAC+AGG - chr3_4:16138214-16138233 None:intergenic 35.0%
AATGAGTACAATCCATTCCA+TGG - chr3_4:16138288-16138307 None:intergenic 35.0%
!! ATGGAATGGATTGTACTCAT+TGG + chr3_4:16138287-16138306 Msa0492430:CDS 35.0%
GAATCTCATTCCAAGTATCT+GGG - chr3_4:16138327-16138346 None:intergenic 35.0%
AGAATCTCATTCCAAGTATC+TGG - chr3_4:16138328-16138347 None:intergenic 35.0%
! GGTGTTGAAATGAGGGTATA+TGG + chr3_4:16136040-16136059 Msa0492430:CDS 40.0%
GGTATATGGTTGGATTGCAA+TGG + chr3_4:16136054-16136073 Msa0492430:CDS 40.0%
CTCAGTTTGGGAGAAACTAA+TGG + chr3_4:16136097-16136116 Msa0492430:CDS 40.0%
AGTTTGGGAGAAACTAATGG+AGG + chr3_4:16136100-16136119 Msa0492430:CDS 40.0%
GTTTGGGAGAAACTAATGGA+GGG + chr3_4:16136101-16136120 Msa0492430:CDS 40.0%
!! GAGGTGGATTGCTTGAAATA+TGG + chr3_4:16136208-16136227 Msa0492430:CDS 40.0%
AGGTATGTGTAGTTGACGAT+GGG - chr3_4:16137020-16137039 None:intergenic 40.0%
GATGAAATAGGTCACTAACC+AGG - chr3_4:16137040-16137059 None:intergenic 40.0%
! TGGTTTTCAACACTTGGCTT+TGG + chr3_4:16137270-16137289 Msa0492430:CDS 40.0%
!!! TTTTCAACACTTGGCTTTGG+TGG + chr3_4:16137273-16137292 Msa0492430:CDS 40.0%
GAAGATTTCATACGGTTGCA+TGG - chr3_4:16137312-16137331 None:intergenic 40.0%
TTTGACAACTTGGGCTAACT+GGG + chr3_4:16137879-16137898 Msa0492430:CDS 40.0%
AGTGCATAGGAGAAATTCCT+TGG - chr3_4:16137945-16137964 None:intergenic 40.0%
AATGGATCATCATCCTCACA+AGG + chr3_4:16138136-16138155 Msa0492430:CDS 40.0%
TGCAATACATATGATGCTGG+TGG - chr3_4:16138166-16138185 None:intergenic 40.0%
GTTGAGAAGATGAACAGGTT+TGG - chr3_4:16138209-16138228 None:intergenic 40.0%
! GGACATCCTAGTTCTCATAA+TGG + chr3_4:16138259-16138278 Msa0492430:CDS 40.0%
TGGAAGCCATTATGAGAACT+AGG - chr3_4:16138268-16138287 None:intergenic 40.0%
AGTTCTCATAATGGCTTCCA+TGG + chr3_4:16138268-16138287 Msa0492430:CDS 40.0%
TCATAATGGCTTCCATGGAA+TGG + chr3_4:16138273-16138292 Msa0492430:CDS 40.0%
TGTACTCATTGGTGTATAGC+TGG + chr3_4:16138298-16138317 Msa0492430:CDS 40.0%
GTACTCATTGGTGTATAGCT+GGG + chr3_4:16138299-16138318 Msa0492430:CDS 40.0%
TACTCATTGGTGTATAGCTG+GGG + chr3_4:16138300-16138319 Msa0492430:CDS 40.0%
! GGTGTTGAAATGAGGGTATA+TGG + chr3_4:16136040-16136059 Msa0492430:CDS 40.0%
GGTATATGGTTGGATTGCAA+TGG + chr3_4:16136054-16136073 Msa0492430:CDS 40.0%
CTCAGTTTGGGAGAAACTAA+TGG + chr3_4:16136097-16136116 Msa0492430:CDS 40.0%
AGTTTGGGAGAAACTAATGG+AGG + chr3_4:16136100-16136119 Msa0492430:CDS 40.0%
GTTTGGGAGAAACTAATGGA+GGG + chr3_4:16136101-16136120 Msa0492430:CDS 40.0%
!! GAGGTGGATTGCTTGAAATA+TGG + chr3_4:16136208-16136227 Msa0492430:CDS 40.0%
AGGTATGTGTAGTTGACGAT+GGG - chr3_4:16137020-16137039 None:intergenic 40.0%
GATGAAATAGGTCACTAACC+AGG - chr3_4:16137040-16137059 None:intergenic 40.0%
! TGGTTTTCAACACTTGGCTT+TGG + chr3_4:16137270-16137289 Msa0492430:CDS 40.0%
!!! TTTTCAACACTTGGCTTTGG+TGG + chr3_4:16137273-16137292 Msa0492430:CDS 40.0%
GAAGATTTCATACGGTTGCA+TGG - chr3_4:16137312-16137331 None:intergenic 40.0%
TTTGACAACTTGGGCTAACT+GGG + chr3_4:16137879-16137898 Msa0492430:CDS 40.0%
AGTGCATAGGAGAAATTCCT+TGG - chr3_4:16137945-16137964 None:intergenic 40.0%
AATGGATCATCATCCTCACA+AGG + chr3_4:16138136-16138155 Msa0492430:CDS 40.0%
TGCAATACATATGATGCTGG+TGG - chr3_4:16138166-16138185 None:intergenic 40.0%
GTTGAGAAGATGAACAGGTT+TGG - chr3_4:16138209-16138228 None:intergenic 40.0%
! GGACATCCTAGTTCTCATAA+TGG + chr3_4:16138259-16138278 Msa0492430:CDS 40.0%
TGGAAGCCATTATGAGAACT+AGG - chr3_4:16138268-16138287 None:intergenic 40.0%
AGTTCTCATAATGGCTTCCA+TGG + chr3_4:16138268-16138287 Msa0492430:CDS 40.0%
TCATAATGGCTTCCATGGAA+TGG + chr3_4:16138273-16138292 Msa0492430:CDS 40.0%
TGTACTCATTGGTGTATAGC+TGG + chr3_4:16138298-16138317 Msa0492430:CDS 40.0%
GTACTCATTGGTGTATAGCT+GGG + chr3_4:16138299-16138318 Msa0492430:CDS 40.0%
TACTCATTGGTGTATAGCTG+GGG + chr3_4:16138300-16138319 Msa0492430:CDS 40.0%
TTGCCCTAATATTCATGCGG+AGG + chr3_4:16136189-16136208 Msa0492430:CDS 45.0%
CCACCTCCGCATGAATATTA+GGG - chr3_4:16136195-16136214 None:intergenic 45.0%
TCCACCTCCGCATGAATATT+AGG - chr3_4:16136196-16136215 None:intergenic 45.0%
ACTTTCTGCTTACTGACACG+TGG + chr3_4:16136565-16136584 Msa0492430:intron 45.0%
! TGTATTGCCACTCTAGCTTG+TGG - chr3_4:16136984-16137003 None:intergenic 45.0%
AGCTAGAGTGGCAATACAAC+AGG + chr3_4:16136986-16137005 Msa0492430:CDS 45.0%
GCTAGAGTGGCAATACAACA+GGG + chr3_4:16136987-16137006 Msa0492430:CDS 45.0%
CAGGTATGTGTAGTTGACGA+TGG - chr3_4:16137021-16137040 None:intergenic 45.0%
CATCGTCAACTACACATACC+TGG + chr3_4:16137019-16137038 Msa0492430:CDS 45.0%
AGTGAAAGACATGGACCGTA+TGG + chr3_4:16137840-16137859 Msa0492430:CDS 45.0%
GTTTGACAACTTGGGCTAAC+TGG + chr3_4:16137878-16137897 Msa0492430:CDS 45.0%
TTTGCACAGTTTCTCACTCC+TGG - chr3_4:16138100-16138119 None:intergenic 45.0%
TTGCCCTAATATTCATGCGG+AGG + chr3_4:16136189-16136208 Msa0492430:CDS 45.0%
CCACCTCCGCATGAATATTA+GGG - chr3_4:16136195-16136214 None:intergenic 45.0%
TCCACCTCCGCATGAATATT+AGG - chr3_4:16136196-16136215 None:intergenic 45.0%
ACTTTCTGCTTACTGACACG+TGG + chr3_4:16136565-16136584 Msa0492430:intron 45.0%
! TGTATTGCCACTCTAGCTTG+TGG - chr3_4:16136984-16137003 None:intergenic 45.0%
AGCTAGAGTGGCAATACAAC+AGG + chr3_4:16136986-16137005 Msa0492430:CDS 45.0%
GCTAGAGTGGCAATACAACA+GGG + chr3_4:16136987-16137006 Msa0492430:CDS 45.0%
CAGGTATGTGTAGTTGACGA+TGG - chr3_4:16137021-16137040 None:intergenic 45.0%
CATCGTCAACTACACATACC+TGG + chr3_4:16137019-16137038 Msa0492430:CDS 45.0%
AGTGAAAGACATGGACCGTA+TGG + chr3_4:16137840-16137859 Msa0492430:CDS 45.0%
GTTTGACAACTTGGGCTAAC+TGG + chr3_4:16137878-16137897 Msa0492430:CDS 45.0%
TTTGCACAGTTTCTCACTCC+TGG - chr3_4:16138100-16138119 None:intergenic 45.0%
!!! ATATTTAATTAGTATATTTT+AGG + chr3_4:16137344-16137363 Msa0492430:intron 5.0%
!!! TATTTAATTAGTATATTTTA+GGG + chr3_4:16137345-16137364 Msa0492430:intron 5.0%
!!! TTTAAATTAATCTTTAAAAT+CGG - chr3_4:16137602-16137621 None:intergenic 5.0%
!!! ATATTTAATTAGTATATTTT+AGG + chr3_4:16137344-16137363 Msa0492430:intron 5.0%
!!! TATTTAATTAGTATATTTTA+GGG + chr3_4:16137345-16137364 Msa0492430:intron 5.0%
!!! TTTAAATTAATCTTTAAAAT+CGG - chr3_4:16137602-16137621 None:intergenic 5.0%
CCCTAATATTCATGCGGAGG+TGG + chr3_4:16136192-16136211 Msa0492430:CDS 50.0%
TGCTGTACCACAAGCTAGAG+TGG + chr3_4:16136974-16136993 Msa0492430:CDS 50.0%
GGAGCACAATGGAATAAGCC+AGG + chr3_4:16138079-16138098 Msa0492430:CDS 50.0%
CCCTAATATTCATGCGGAGG+TGG + chr3_4:16136192-16136211 Msa0492430:CDS 50.0%
TGCTGTACCACAAGCTAGAG+TGG + chr3_4:16136974-16136993 Msa0492430:CDS 50.0%
GGAGCACAATGGAATAAGCC+AGG + chr3_4:16138079-16138098 Msa0492430:CDS 50.0%
!! TGGCTTTGGTGGTACCGTAC+AGG + chr3_4:16137284-16137303 Msa0492430:CDS 55.0%
ACGGTTGCATGGGTCCTGTA+CGG - chr3_4:16137301-16137320 None:intergenic 55.0%
TGCTGGTGGCAATCCTTGTG+AGG - chr3_4:16138152-16138171 None:intergenic 55.0%
TAGCTGGGGTCCCAGATACT+TGG + chr3_4:16138314-16138333 Msa0492430:CDS 55.0%
!! TGGCTTTGGTGGTACCGTAC+AGG + chr3_4:16137284-16137303 Msa0492430:CDS 55.0%
ACGGTTGCATGGGTCCTGTA+CGG - chr3_4:16137301-16137320 None:intergenic 55.0%
TGCTGGTGGCAATCCTTGTG+AGG - chr3_4:16138152-16138171 None:intergenic 55.0%
TAGCTGGGGTCCCAGATACT+TGG + chr3_4:16138314-16138333 Msa0492430:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 16136037 16138369 16136037 ID=Msa0492430;Name=Msa0492430
chr3_4 mRNA 16136037 16138369 16136037 ID=Msa0492430-mRNA-1;Parent=Msa0492430;Name=Msa0492430-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|5|0|351
chr3_4 exon 16136037 16136290 16136037 ID=Msa0492430-mRNA-1:exon:4625;Parent=Msa0492430-mRNA-1
chr3_4 exon 16136866 16137040 16136866 ID=Msa0492430-mRNA-1:exon:4626;Parent=Msa0492430-mRNA-1
chr3_4 exon 16137143 16137318 16137143 ID=Msa0492430-mRNA-1:exon:4627;Parent=Msa0492430-mRNA-1
chr3_4 exon 16137810 16137968 16137810 ID=Msa0492430-mRNA-1:exon:4628;Parent=Msa0492430-mRNA-1
chr3_4 exon 16138078 16138369 16138078 ID=Msa0492430-mRNA-1:exon:4629;Parent=Msa0492430-mRNA-1
chr3_4 CDS 16136037 16136290 16136037 ID=Msa0492430-mRNA-1:cds;Parent=Msa0492430-mRNA-1
chr3_4 CDS 16136866 16137040 16136866 ID=Msa0492430-mRNA-1:cds;Parent=Msa0492430-mRNA-1
chr3_4 CDS 16137143 16137318 16137143 ID=Msa0492430-mRNA-1:cds;Parent=Msa0492430-mRNA-1
chr3_4 CDS 16137810 16137968 16137810 ID=Msa0492430-mRNA-1:cds;Parent=Msa0492430-mRNA-1
chr3_4 CDS 16138078 16138369 16138078 ID=Msa0492430-mRNA-1:cds;Parent=Msa0492430-mRNA-1
Gene Sequence

>Msa0492430

ATGGGTGTTGAAATGAGGGTATATGGTTGGATTGCAATGGTAATTTCTATGGCAATTTGTCTCAGTTTGGGAGAAACTAATGGAGGGAGTTGCAATTTATATGAAGGTAAATGGGTGTATGATGAATCATATCCTCTTTATGATTCTTCAACTTGCCCTAATATTCATGCGGAGGTGGATTGCTTGAAATATGGTCGTCTTGATAAGCAATACCTCAAATATAGATGGCAACCAAGCAATTGTAACTTACCAAGATTTGACGGAAGAAGTTTCTTGACAAAATTCAAGGGGAAACAAATCATGTTTATTGGAGATTCTATAAGTCGAAACCAAAAGCAATCACTTATATGTTTGCTTCATTCTGCTGTACCACAAGCTAGAGTGGCAATACAACAGGGTGTTGATCCCATCGTCAACTACACATACCTGGACTATGGAGTTTCAATTATTGTCCACCATACTACATATTTGGTTGACATTGAAGTGGAAAAAATTGGTCGAGTATTGAAACTTGATTCCCTTAAAAGTGGAAACTTATGGAAACAAATGGATGTTTTGGTTTTCAACACTTGGCTTTGGTGGTACCGTACAGGACCCATGCAACCATGGGATTATATTCAAATAGGTAACAAAATAGTGAAAGACATGGACCGTATGGAAGCTTTTAAAACTGGTTTGACAACTTGGGCTAACTGGGTTAATACAGAAGTTGATACAAGCAAAACCAAAGTTCTTTTCCAAGGAATTTCTCCTATGCACTACAATGGAGCACAATGGAATAAGCCAGGAGTGAGAAACTGTGCAAAAGAGACAACACCAATAAATGGATCATCATCCTCACAAGGATTGCCACCAGCATCATATGTATTGCAAAATGTGTTGCAAAAAATAACCAAACCTGTTCATCTTCTCAACATTACAGCTCTATCAGAATTGAGAAAAGATGGACATCCTAGTTCTCATAATGGCTTCCATGGAATGGATTGTACTCATTGGTGTATAGCTGGGGTCCCAGATACTTGGAATGAGATTCTATATGCATCAATCATAAATTAG
Protein sequence

>Msa0492430

MGVEMRVYGWIAMVISMAICLSLGETNGGSCNLYEGKWVYDESYPLYDSSTCPNIHAEVDCLKYGRLDKQYLKYRWQPSNCNLPRFDGRSFLTKFKGKQIMFIGDSISRNQKQSLICLLHSAVPQARVAIQQGVDPIVNYTYLDYGVSIIVHHTTYLVDIEVEKIGRVLKLDSLKSGNLWKQMDVLVFNTWLWWYRTGPMQPWDYIQIGNKIVKDMDRMEAFKTGLTTWANWVNTEVDTSKTKVLFQGISPMHYNGAQWNKPGVRNCAKETTPINGSSSSQGLPPASYVLQNVLQKITKPVHLLNITALSELRKDGHPSSHNGFHGMDCTHWCIAGVPDTWNEILYASIIN*