AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0494220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0494220 MtrunA17_Chr3g0087891 92.486 346 14 1 1 334 1 346 0.0 660
Msa0494220 MtrunA17_Chr3g0087881 50.667 300 123 7 1 295 1 280 1.56e-83 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0494220 AT3G08505.1 57.225 346 102 4 1 334 1 312 5.57e-137 396
Msa0494220 AT3G08505.2 57.225 346 102 4 1 334 1 312 5.57e-137 396
Msa0494220 AT3G08505.3 57.225 346 102 4 1 334 1 312 5.57e-137 396

Find 132 sgRNAs with CRISPR-Local

Find 540 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGACATGGCGAAATTAT+TGG 0.152147 3_4:-21949876 None:intergenic
CCAATGATAGCATATCTTTA+AGG 0.165297 3_4:+21956762 Msa0494220:CDS
GTTTATATGAATTTAAAATA+TGG 0.189355 3_4:+21957714 Msa0494220:three_prime_UTR
GCCCTTTCCATTTACTGTTT+TGG 0.192729 3_4:+21956719 Msa0494220:CDS
CCTGATGTCTTTGGCAATTA+TGG 0.200868 3_4:-21953217 None:intergenic
GAAGCACTTTGAGGAGGTTT+AGG 0.234779 3_4:+21949803 Msa0494220:five_prime_UTR
AACATTAACCAACACTTCTA+TGG 0.246705 3_4:-21954084 None:intergenic
TTACTTGAGCTTTGCCTTGT+AGG 0.248432 3_4:-21951873 None:intergenic
CAGAAAGGAGTTTGTGCTTA+TGG 0.262469 3_4:+21951128 Msa0494220:CDS
GACAATGCTTGCATCCTTTC+CGG 0.265577 3_4:+21951516 Msa0494220:CDS
GCGTATCGTGTATTAGAAAT+TGG 0.271742 3_4:+21951711 Msa0494220:CDS
GGAATTTGTCAGGAGACTTT+TGG 0.272520 3_4:+21957678 Msa0494220:three_prime_UTR
AGAAGAGCCAAAACAGTAAA+TGG 0.273631 3_4:-21956726 None:intergenic
TCTTGATTGAGAAAACAAAA+AGG 0.290311 3_4:-21949782 None:intergenic
AAGAAAGAAAGATTGGAAAT+TGG 0.291707 3_4:-21949625 None:intergenic
AACTACAGTGTACACCATTT+TGG 0.303484 3_4:+21957441 Msa0494220:three_prime_UTR
ATTGTATCACCAACATTATT+CGG 0.326526 3_4:-21951001 None:intergenic
AGGTAGCTTTGCGTCATCTT+GGG 0.329256 3_4:+21953178 Msa0494220:CDS
TTGTCGTTCCAAGTGTTATT+TGG 0.331364 3_4:+21951813 Msa0494220:CDS
AAGCACTTTGAGGAGGTTTA+GGG 0.335451 3_4:+21949804 Msa0494220:five_prime_UTR
CGTAGTAGTAACCCAACATT+AGG 0.336048 3_4:+21951734 Msa0494220:CDS
TTGTGCAGATTCTTGATTCC+AGG 0.338822 3_4:-21951345 None:intergenic
GAGGTAGCTTTGCGTCATCT+TGG 0.340448 3_4:+21953177 Msa0494220:CDS
GGTCATGTTCCCAAGATTCT+TGG 0.340729 3_4:-21957625 None:intergenic
TTTATATGAATTTAAAATAT+GGG 0.355203 3_4:+21957715 Msa0494220:three_prime_UTR
TAAAAGTGCAAATTGTAAAA+TGG 0.356358 3_4:+21957320 Msa0494220:CDS
AATATGTGTAAAAGTTAATT+AGG 0.361095 3_4:+21957520 Msa0494220:three_prime_UTR
ATTTGTTCATTTGCTGCTGC+TGG 0.363377 3_4:+21951431 Msa0494220:CDS
CTCTCCCCATATGACCAAAA+TGG 0.365915 3_4:-21957455 None:intergenic
ATTTCCATCTACTTCTGCTT+TGG 0.367658 3_4:-21954114 None:intergenic
TGACATTGCACCAAGAATCT+TGG 0.377266 3_4:+21957615 Msa0494220:three_prime_UTR
CTTTGTAAGTTCTTTGCTCA+TGG 0.382149 3_4:+21950926 Msa0494220:CDS
CCTTAAAGATATGCTATCAT+TGG 0.385829 3_4:-21956762 None:intergenic
ATATGTTCTTCTCTTTCTTC+AGG 0.386226 3_4:-21951539 None:intergenic
TTGATTCCAGGCTTGTTCAC+TGG 0.388041 3_4:-21951333 None:intergenic
AAAGAAATGGTTGTGAAGAT+AGG 0.395041 3_4:-21949684 None:intergenic
GCAAATTGTAAAATGGTAGA+TGG 0.396681 3_4:+21957327 Msa0494220:exon
GGCGAAGGAAACTGCCCTTT+CGG 0.397193 3_4:+21952517 Msa0494220:CDS
CTCAATCAAGAAGCACTTTG+AGG 0.402669 3_4:+21949794 Msa0494220:five_prime_UTR
TTTGAAGCATACAAAATGAA+TGG 0.408761 3_4:+21957399 Msa0494220:three_prime_UTR
AGAGAGAAACCTGATGTCTT+TGG 0.415002 3_4:-21953226 None:intergenic
TGATTCCAGGCTTGTTCACT+GGG 0.416070 3_4:-21951332 None:intergenic
CAATGATAGCATATCTTTAA+GGG 0.422202 3_4:+21956763 Msa0494220:CDS
TTCTTCCCAGTGAACAAGCC+TGG 0.423135 3_4:+21951327 Msa0494220:CDS
ATGAGGAAAGAAAGAAAGAT+TGG 0.426366 3_4:-21949632 None:intergenic
GTTTCAGAATCGGCTGTACT+TGG 0.435930 3_4:+21951236 Msa0494220:CDS
ACGGCAGCTGAGCGTAAGTT+TGG 0.437819 3_4:+21951659 Msa0494220:CDS
ATTATTTACAGGAATTTGTC+AGG 0.438068 3_4:+21957668 Msa0494220:three_prime_UTR
CTGCACAACTTGACTTCCTA+AGG 0.447330 3_4:+21951360 Msa0494220:CDS
TAACAAAATTCATACATTGT+TGG 0.448911 3_4:-21957646 None:intergenic
GTGCTTATGGTAGTCGCTGC+AGG 0.448946 3_4:+21951141 Msa0494220:CDS
TTGTCCAAAGCAGAAGTAGA+TGG 0.449280 3_4:+21954110 Msa0494220:CDS
CTCATGGAGCGTGTCTGAAA+GGG 0.457791 3_4:+21950942 Msa0494220:CDS
TGAAACAAGGGGCTGGTGTT+CGG 0.458109 3_4:-21951219 None:intergenic
GACATTGCACCAAGAATCTT+GGG 0.462286 3_4:+21957616 Msa0494220:three_prime_UTR
TAACATCCATCCCTAATGTT+GGG 0.466091 3_4:-21951745 None:intergenic
CCAGCCCCTTGTTTCAGAAT+CGG 0.469602 3_4:+21951226 Msa0494220:CDS
CGTCATCTTGGGGCTGCAGA+TGG 0.471622 3_4:+21953189 Msa0494220:CDS
TGTTCGGTTATTGAAGAAGA+TGG 0.473750 3_4:-21951203 None:intergenic
GGAAGATGATGTTGTTCAAT+CGG 0.474976 3_4:+21951382 Msa0494220:CDS
CCATAATTGCCAAAGACATC+AGG 0.475198 3_4:+21953217 Msa0494220:CDS
AAAATGAATGGATTGATGAT+TGG 0.482043 3_4:+21957411 Msa0494220:three_prime_UTR
GCATATCTTTAAGGGAGATA+TGG 0.482595 3_4:+21956771 Msa0494220:CDS
ACTTTGATCCTAACGCCTCT+TGG 0.485589 3_4:+21949833 Msa0494220:five_prime_UTR
GAACAACATCATCTTCCCTT+AGG 0.486955 3_4:-21951376 None:intergenic
TTAACATCCATCCCTAATGT+TGG 0.488690 3_4:-21951746 None:intergenic
TAAGATAGCTTGCGACAGAT+AGG 0.489220 3_4:-21951788 None:intergenic
GCAGCAGCAAATGAACAAAT+CGG 0.492646 3_4:-21951428 None:intergenic
AATATTAACCAAGAGGCGTT+AGG 0.495686 3_4:-21949841 None:intergenic
TGAGACACAACACAGAGGTT+AGG 0.518491 3_4:-21949593 None:intergenic
GCTCATGGAGCGTGTCTGAA+AGG 0.521682 3_4:+21950941 Msa0494220:CDS
TCTCTTTCTTCAGGCCGGAA+AGG 0.522386 3_4:-21951530 None:intergenic
GCCAAAACAGTAAATGGAAA+GGG 0.524346 3_4:-21956720 None:intergenic
CTTAAAGATATGCTATCATT+GGG 0.524732 3_4:-21956761 None:intergenic
CAACACCATTCGATGTAACT+CGG 0.526387 3_4:-21951265 None:intergenic
GTTCTTCTCTTTCTTCAGGC+CGG 0.528004 3_4:-21951535 None:intergenic
TCTTTAAGGGAGATATGGTC+AGG 0.537896 3_4:+21956776 Msa0494220:CDS
GAACAAATCGGAAGCTCAGA+AGG 0.538088 3_4:-21951416 None:intergenic
GGTTGATGATGAGGAATTTG+AGG 0.541335 3_4:+21954046 Msa0494220:CDS
TACAGCCGATTCTGAAACAA+GGG 0.542302 3_4:-21951231 None:intergenic
GGAAATACATCACTTGATAA+CGG 0.546625 3_4:+21954131 Msa0494220:CDS
GATGAGGAATTTGAGGAGAA+TGG 0.547301 3_4:+21954053 Msa0494220:CDS
GTAGTAGTAACCCAACATTA+GGG 0.548465 3_4:+21951735 Msa0494220:CDS
GAACAATGTCCTCATGTACA+TGG 0.552108 3_4:+21951470 Msa0494220:CDS
GCGTGTTCTTTCAAAGCCTA+CGG 0.552472 3_4:+21951640 Msa0494220:CDS
ACACAACACAGAGGTTAGGT+TGG 0.556767 3_4:-21949589 None:intergenic
GGTAGCTTTGCGTCATCTTG+GGG 0.557694 3_4:+21953179 Msa0494220:CDS
AAAAGTTAATTAGGTCAATG+AGG 0.559312 3_4:+21957529 Msa0494220:three_prime_UTR
TGTTCACTGGGAAGAACAAA+GGG 0.561359 3_4:-21951320 None:intergenic
CCGATTCTGAAACAAGGGGC+TGG 0.563910 3_4:-21951226 None:intergenic
ATGATAGGTGGTTGATGATG+AGG 0.573836 3_4:+21954037 Msa0494220:intron
GGATGTTAATAGCACACTGC+GGG 0.575503 3_4:+21951760 Msa0494220:CDS
TATCACCAACATTATTCGGA+GGG 0.577334 3_4:-21950997 None:intergenic
AGCCAAAACAGTAAATGGAA+AGG 0.580196 3_4:-21956721 None:intergenic
ATATCGTGATGGCCGTCTTG+AGG 0.591471 3_4:+21953155 Msa0494220:CDS
AGAAGCAGCTGGTACCGAAA+GGG 0.591507 3_4:-21952531 None:intergenic
CAAGCATTGTCTTCCACATG+AGG 0.592492 3_4:-21951504 None:intergenic
TTGTTCACTGGGAAGAACAA+AGG 0.593124 3_4:-21951321 None:intergenic
ATCACCAACATTATTCGGAG+GGG 0.593920 3_4:-21950996 None:intergenic
TAGTAACCCAACATTAGGGA+TGG 0.597655 3_4:+21951739 Msa0494220:CDS
AATACCCGAGTTACATCGAA+TGG 0.599856 3_4:+21951260 Msa0494220:CDS
GGAAATTTATGCCCCTCATG+TGG 0.606014 3_4:+21951491 Msa0494220:CDS
TATTGAAGAAGATGGAGTAG+AGG 0.608961 3_4:-21951195 None:intergenic
AATCAAGAAGCACTTTGAGG+AGG 0.609077 3_4:+21949797 Msa0494220:five_prime_UTR
CATAAATTTCCATGTACATG+AGG 0.611850 3_4:-21951479 None:intergenic
GTAGCATACCAAATAACACT+TGG 0.613633 3_4:-21951821 None:intergenic
AAGCATTGTCTTCCACATGA+GGG 0.614385 3_4:-21951503 None:intergenic
TCGTGATGGCCGTCTTGAGG+AGG 0.617371 3_4:+21953158 Msa0494220:CDS
AACACCATTCGATGTAACTC+GGG 0.620122 3_4:-21951264 None:intergenic
TAATAATAATATTAACCAAG+AGG 0.624849 3_4:-21949848 None:intergenic
AGCATTGTCTTCCACATGAG+GGG 0.631001 3_4:-21951502 None:intergenic
GGAAATCATTGATACCTACA+AGG 0.631452 3_4:+21951859 Msa0494220:CDS
ATAATTTCGCCATGTCAAAG+AGG 0.631521 3_4:+21949879 Msa0494220:exon
AACTTACGCTCAGCTGCCGT+AGG 0.632534 3_4:-21951656 None:intergenic
TGCACAACTTGACTTCCTAA+GGG 0.633433 3_4:+21951361 Msa0494220:CDS
GTATCACCAACATTATTCGG+AGG 0.636921 3_4:-21950998 None:intergenic
TGAGGACATTGTTCCCCTCG+TGG 0.637218 3_4:-21951461 None:intergenic
GTACAGCCGATTCTGAAACA+AGG 0.638170 3_4:-21951232 None:intergenic
CTGCTGGAAACTGTCCACGA+GGG 0.638932 3_4:+21951447 Msa0494220:CDS
TGCTGGAAACTGTCCACGAG+GGG 0.639094 3_4:+21951448 Msa0494220:CDS
CTAATACACGATACGCAGAA+CGG 0.640856 3_4:-21951704 None:intergenic
TCATGGAGCGTGTCTGAAAG+GGG 0.647946 3_4:+21950943 Msa0494220:CDS
TCTATCTTACCTCTTTGACA+TGG 0.648394 3_4:-21949888 None:intergenic
TTGCAGCATGCATATCGTGA+TGG 0.670081 3_4:+21953144 Msa0494220:intron
AAATAAGCAAAAGCATCTCG+AGG 0.674626 3_4:+21951574 Msa0494220:CDS
ATGGAAAGGGCATTGCACAA+AGG 0.675107 3_4:-21956707 None:intergenic
GCTGCTGGAAACTGTCCACG+AGG 0.694625 3_4:+21951446 Msa0494220:CDS
GCTTTGAAAGAACACGCTCG+AGG 0.700611 3_4:-21951634 None:intergenic
ACAGCCGATTCTGAAACAAG+GGG 0.720447 3_4:-21951230 None:intergenic
GCAAAGCTACCTCCTCAAGA+CGG 0.724386 3_4:-21953167 None:intergenic
TTGAATGAGACACAACACAG+AGG 0.766563 3_4:-21949598 None:intergenic
TGGATGTTAATAGCACACTG+CGG 0.772501 3_4:+21951759 Msa0494220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAATATTATTATG+AGG - chr3_4:21949652-21949671 None:intergenic 10.0%
!! CTATAATAAAAATAAAATTG+AGG - chr3_4:21949761-21949780 None:intergenic 10.0%
!!! TTCTTGATTATTTTTTTATA+TGG + chr3_4:21949951-21949970 Msa0494220:intron 10.0%
!!! TCTTGATTATTTTTTTATAT+GGG + chr3_4:21949952-21949971 Msa0494220:intron 10.0%
!!! TAAAAAAGTATTTATTTTGT+TGG - chr3_4:21955348-21955367 None:intergenic 10.0%
!!! GTTTATATGAATTTAAAATA+TGG + chr3_4:21957714-21957733 Msa0494220:three_prime_UTR 10.0%
!! TAATAATAATATTAACCAAG+AGG - chr3_4:21949851-21949870 None:intergenic 15.0%
!!! CTTGATTATTTTTTTATATG+GGG + chr3_4:21949953-21949972 Msa0494220:intron 15.0%
!!! TAGATTTTTTTTTGGATTAT+TGG + chr3_4:21950114-21950133 Msa0494220:intron 15.0%
!! TTTATGTAATTAATTGTCTT+TGG + chr3_4:21950889-21950908 Msa0494220:intron 15.0%
!!! AATAAACTAAAAACAACTTT+TGG + chr3_4:21952310-21952329 Msa0494220:intron 15.0%
!!! TGCAAATTTTAAATATACTT+GGG - chr3_4:21952996-21953015 None:intergenic 15.0%
!!! TTGCAAATTTTAAATATACT+TGG - chr3_4:21952997-21953016 None:intergenic 15.0%
!! AAGTATAACATAAACTAATT+AGG - chr3_4:21953122-21953141 None:intergenic 15.0%
!! AAAGTTAAACTTAAATTGAT+AGG - chr3_4:21954282-21954301 None:intergenic 15.0%
!! TCAAAAAATAAAAGACTATT+TGG - chr3_4:21955418-21955437 None:intergenic 15.0%
!! AAATTAAAAAAAGACAACTA+TGG - chr3_4:21955515-21955534 None:intergenic 15.0%
!! AATATCAAAATATTAATGTC+TGG - chr3_4:21956335-21956354 None:intergenic 15.0%
!! AGTAATTAAGAAAATTGAAA+AGG + chr3_4:21957109-21957128 Msa0494220:intron 15.0%
!! AATATGTGTAAAAGTTAATT+AGG + chr3_4:21957520-21957539 Msa0494220:three_prime_UTR 15.0%
!!! TGAATTTTGTTATTATTTAC+AGG + chr3_4:21957657-21957676 Msa0494220:three_prime_UTR 15.0%
!! AAAAGCAAAAGAAAAAGAAA+TGG - chr3_4:21949700-21949719 None:intergenic 20.0%
!!! TTTTTTTTTCTTCAATCATG+TGG + chr3_4:21950033-21950052 Msa0494220:intron 20.0%
!! TTGATTATAACTCAGAAATT+AGG + chr3_4:21950074-21950093 Msa0494220:intron 20.0%
!!! ATGCAAAGTAGATTTTTTTT+TGG + chr3_4:21950106-21950125 Msa0494220:intron 20.0%
!!! AGTTTTTTTTTTTGCAAGTT+CGG + chr3_4:21950332-21950351 Msa0494220:intron 20.0%
!! AAGTTCGGTAAATAATTATT+CGG + chr3_4:21950347-21950366 Msa0494220:intron 20.0%
!!! TTATAGCTTTTGAATTTTCA+CGG + chr3_4:21950563-21950582 Msa0494220:intron 20.0%
!!! AAAAGTCTCTAGAATAAAAA+GGG - chr3_4:21950701-21950720 None:intergenic 20.0%
!!! AAAAAGTCTCTAGAATAAAA+AGG - chr3_4:21950702-21950721 None:intergenic 20.0%
!!! TTTATTCTAGAGACTTTTTA+AGG + chr3_4:21950703-21950722 Msa0494220:intron 20.0%
!! ATAACTCAATAACCATAAAT+CGG - chr3_4:21951049-21951068 None:intergenic 20.0%
!! ATATTAGATCATGAATCAAT+TGG - chr3_4:21951949-21951968 None:intergenic 20.0%
!!! ACTATTATGTTGCTTATATT+AGG - chr3_4:21952117-21952136 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr3_4:21952151-21952170 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr3_4:21952152-21952171 None:intergenic 20.0%
!! TTATATCTGAGTTTATATAC+TGG - chr3_4:21952391-21952410 None:intergenic 20.0%
!!! TTTTGCTGAAATGTTTATTT+TGG + chr3_4:21952443-21952462 Msa0494220:intron 20.0%
!! TTTGGAAAGAAAAGTAAAAT+GGG - chr3_4:21952613-21952632 None:intergenic 20.0%
!!! TTTTGGAAAGAAAAGTAAAA+TGG - chr3_4:21952614-21952633 None:intergenic 20.0%
!!! AAACAATTGAAATTTGTTCA+CGG - chr3_4:21952733-21952752 None:intergenic 20.0%
!! AAACATCATAATTAAACGTT+AGG - chr3_4:21953042-21953061 None:intergenic 20.0%
!!! TTCATGATTTCTTTTGTATA+TGG + chr3_4:21953410-21953429 Msa0494220:intron 20.0%
!!! TTTTTTTTTTTTTCCTTGAG+CGG - chr3_4:21953694-21953713 None:intergenic 20.0%
!! TTAAGCAACTTAAATTCTTA+TGG - chr3_4:21953728-21953747 None:intergenic 20.0%
!!! AGAATTTAAGTTGCTTAATT+TGG + chr3_4:21953730-21953749 Msa0494220:intron 20.0%
!! CAATGTAATTGAATGAAATA+GGG - chr3_4:21953813-21953832 None:intergenic 20.0%
!! TCAATGTAATTGAATGAAAT+AGG - chr3_4:21953814-21953833 None:intergenic 20.0%
!!! CAATGAAGTTGATTATTTTT+CGG + chr3_4:21954154-21954173 Msa0494220:CDS 20.0%
!!! GTTTAACTTTCTTGATTTTT+TGG + chr3_4:21954292-21954311 Msa0494220:intron 20.0%
!!! ACAGTCAACTAATATTTTTT+TGG - chr3_4:21954463-21954482 None:intergenic 20.0%
!! TTAGACATTATGGAATAAAT+GGG + chr3_4:21954681-21954700 Msa0494220:intron 20.0%
!! AAAAATAAAAGACTATTTGG+AGG - chr3_4:21955415-21955434 None:intergenic 20.0%
!! ATGATTTCTCAAAATGTAAT+TGG - chr3_4:21955998-21956017 None:intergenic 20.0%
!! TATCTACAAATAACTGTAAT+CGG - chr3_4:21956522-21956541 None:intergenic 20.0%
!!! TTTTGTTTAATCAGTTTCAA+AGG + chr3_4:21957258-21957277 Msa0494220:intron 20.0%
!!! TAAAAGTGCAAATTGTAAAA+TGG + chr3_4:21957320-21957339 Msa0494220:CDS 20.0%
!!! ATATATATGCTTTTGTACAA+TGG + chr3_4:21957352-21957371 Msa0494220:three_prime_UTR 20.0%
!!! ATTTTGTATGCTTCAAAAAT+TGG - chr3_4:21957396-21957415 None:intergenic 20.0%
!!! ACATTTACTTTTATGTATTG+TGG + chr3_4:21957489-21957508 Msa0494220:three_prime_UTR 20.0%
!!! GTAAACTTAATTTTTATGCT+TGG + chr3_4:21957592-21957611 Msa0494220:three_prime_UTR 20.0%
!! TAACAAAATTCATACATTGT+TGG - chr3_4:21957649-21957668 None:intergenic 20.0%
!!! ATTTTAGCATCTTAATGAAA+TGG + chr3_4:21957738-21957757 Msa0494220:three_prime_UTR 20.0%
! AAGAAAGAAAGATTGGAAAT+TGG - chr3_4:21949628-21949647 None:intergenic 25.0%
!!! AAAAAAAACCTCACGTTTTT+TGG + chr3_4:21949732-21949751 Msa0494220:five_prime_UTR 25.0%
! CTTGATTGAGAAAACAAAAA+GGG - chr3_4:21949784-21949803 None:intergenic 25.0%
! TCTTGATTGAGAAAACAAAA+AGG - chr3_4:21949785-21949804 None:intergenic 25.0%
!!! ATTGGATAAGTTTTTGAAGT+TGG + chr3_4:21950132-21950151 Msa0494220:intron 25.0%
!! TTTGAAGTTGGAATTCTATT+AGG + chr3_4:21950144-21950163 Msa0494220:intron 25.0%
! AATTTGATATTTCTCCTATC+TGG + chr3_4:21950257-21950276 Msa0494220:intron 25.0%
! ATTTGATATTTCTCCTATCT+GGG + chr3_4:21950258-21950277 Msa0494220:intron 25.0%
!!! TTTCTTTTTGATTGGAATTC+AGG + chr3_4:21950282-21950301 Msa0494220:intron 25.0%
! ATGATATAGCTTATTGAAGT+AGG + chr3_4:21950373-21950392 Msa0494220:intron 25.0%
! TATGCATATGTTTATTTGAG+CGG + chr3_4:21950490-21950509 Msa0494220:intron 25.0%
! AATTCAAAAGCTATAAAGAG+TGG - chr3_4:21950559-21950578 None:intergenic 25.0%
!!! AAAGTCTCTAGAATAAAAAG+GGG - chr3_4:21950700-21950719 None:intergenic 25.0%
! GCATGATTAAAATGAATTCA+TGG - chr3_4:21950766-21950785 None:intergenic 25.0%
! ATTGTATCACCAACATTATT+CGG - chr3_4:21951004-21951023 None:intergenic 25.0%
!! ATATGCACATTTTATCAGAA+AGG + chr3_4:21951113-21951132 Msa0494220:CDS 25.0%
!! ACATAAAACTATCTAAGGTT+TGG - chr3_4:21951975-21951994 None:intergenic 25.0%
! ATGCTGAATAAGTTGTTATA+AGG + chr3_4:21952010-21952029 Msa0494220:intron 25.0%
! TGCTGAATAAGTTGTTATAA+GGG + chr3_4:21952011-21952030 Msa0494220:intron 25.0%
!! AGTGTTTTCATAAGTTATCT+TGG + chr3_4:21952275-21952294 Msa0494220:intron 25.0%
! ATTTGTTCAATACCATTTGT+AGG + chr3_4:21952467-21952486 Msa0494220:intron 25.0%
!! CTATACGATAAGTAAAGTTT+TGG - chr3_4:21952631-21952650 None:intergenic 25.0%
!! AATGTCATAAAGCATCAATT+GGG - chr3_4:21952664-21952683 None:intergenic 25.0%
!! TAATGTCATAAAGCATCAAT+TGG - chr3_4:21952665-21952684 None:intergenic 25.0%
! TCATAATTAAACGTTAGGTA+GGG - chr3_4:21953037-21953056 None:intergenic 25.0%
! ATCATAATTAAACGTTAGGT+AGG - chr3_4:21953038-21953057 None:intergenic 25.0%
! ATGTATTAAGTTAGCGAAAT+TGG - chr3_4:21953284-21953303 None:intergenic 25.0%
!! TTTCCCTAGTATATTGTTTT+AGG - chr3_4:21953935-21953954 None:intergenic 25.0%
! ACAATATACTAGGGAAATAA+AGG + chr3_4:21953938-21953957 Msa0494220:intron 25.0%
! ACTGTATTTATGTGCTATAT+TGG + chr3_4:21954344-21954363 Msa0494220:intron 25.0%
! TATAGATAATCTTAGTGTCT+TGG + chr3_4:21954559-21954578 Msa0494220:intron 25.0%
! GTTAGACATTATGGAATAAA+TGG + chr3_4:21954680-21954699 Msa0494220:intron 25.0%
!! TCATTTTCAGCAATCTTTTA+TGG + chr3_4:21954959-21954978 Msa0494220:intron 25.0%
! AGTTTGGAAGTGAAATAATT+AGG - chr3_4:21955311-21955330 None:intergenic 25.0%
!!! ACAATTTTTTGATTCCCAAA+TGG + chr3_4:21955437-21955456 Msa0494220:intron 25.0%
! CAGAATACTTGCATAAAAAA+TGG + chr3_4:21955586-21955605 Msa0494220:intron 25.0%
! ACTTACCATAAAAATTGAAG+AGG - chr3_4:21955656-21955675 None:intergenic 25.0%
! ATATTCCAACAAAAAAGCTT+CGG - chr3_4:21955709-21955728 None:intergenic 25.0%
!!! TGTTGGAATATTAGTTTTGT+TGG + chr3_4:21955718-21955737 Msa0494220:intron 25.0%
! AGATTGTTTGTACTTTGTAA+TGG + chr3_4:21956066-21956085 Msa0494220:intron 25.0%
!! TACTTTGTAATGGAAAGATT+TGG + chr3_4:21956076-21956095 Msa0494220:intron 25.0%
!! ACTTTGTAATGGAAAGATTT+GGG + chr3_4:21956077-21956096 Msa0494220:intron 25.0%
! ATCTACAAATAACTGTAATC+GGG - chr3_4:21956521-21956540 None:intergenic 25.0%
! CTTAAAGATATGCTATCATT+GGG - chr3_4:21956764-21956783 None:intergenic 25.0%
! CAATGATAGCATATCTTTAA+GGG + chr3_4:21956763-21956782 Msa0494220:CDS 25.0%
! AATACACCAATACATATCAA+GGG - chr3_4:21957007-21957026 None:intergenic 25.0%
! AAATACACCAATACATATCA+AGG - chr3_4:21957008-21957027 None:intergenic 25.0%
! ATGCAAGCAATATTAATTAG+AGG + chr3_4:21957072-21957091 Msa0494220:intron 25.0%
!! TTTGCACTTTTATTACATGA+TGG - chr3_4:21957312-21957331 None:intergenic 25.0%
!! TTTGAAGCATACAAAATGAA+TGG + chr3_4:21957399-21957418 Msa0494220:three_prime_UTR 25.0%
!!! AAAATGAATGGATTGATGAT+TGG + chr3_4:21957411-21957430 Msa0494220:three_prime_UTR 25.0%
! AAAAGTTAATTAGGTCAATG+AGG + chr3_4:21957529-21957548 Msa0494220:three_prime_UTR 25.0%
! ATTATTTACAGGAATTTGTC+AGG + chr3_4:21957668-21957687 Msa0494220:three_prime_UTR 25.0%
ATGAGGAAAGAAAGAAAGAT+TGG - chr3_4:21949635-21949654 None:intergenic 30.0%
AAAGAAATGGTTGTGAAGAT+AGG - chr3_4:21949687-21949706 None:intergenic 30.0%
ATCAAAAAGAAAACCCAGAT+AGG - chr3_4:21950274-21950293 None:intergenic 30.0%
! ATCTGGGTTTTCTTTTTGAT+TGG + chr3_4:21950274-21950293 Msa0494220:intron 30.0%
TTGATTGGAATTCAGGAATT+AGG + chr3_4:21950289-21950308 Msa0494220:intron 30.0%
ATCGACATTAATCCTTATCA+CGG - chr3_4:21950729-21950748 None:intergenic 30.0%
! CATGGTTAGAAGGTTTTTAA+CGG + chr3_4:21950808-21950827 Msa0494220:intron 30.0%
!! AATTGTCTTTGGAATCTTTC+AGG + chr3_4:21950900-21950919 Msa0494220:intron 30.0%
!! ATTGTCTTTGGAATCTTTCA+GGG + chr3_4:21950901-21950920 Msa0494220:intron 30.0%
TGATACAATCTCTTCTATGT+TGG + chr3_4:21951015-21951034 Msa0494220:intron 30.0%
CATAAATTTCCATGTACATG+AGG - chr3_4:21951482-21951501 None:intergenic 30.0%
ATATGTTCTTCTCTTTCTTC+AGG - chr3_4:21951542-21951561 None:intergenic 30.0%
TGCTACAAGTGAAGAAAAAA+TGG + chr3_4:21951838-21951857 Msa0494220:CDS 30.0%
AAGACATAAATAGATGCTGT+GGG - chr3_4:21951910-21951929 None:intergenic 30.0%
CACAGACATAAAACTATCTA+AGG - chr3_4:21951980-21951999 None:intergenic 30.0%
ACAACTTATTCAGCATAGTA+TGG - chr3_4:21952006-21952025 None:intergenic 30.0%
GCTGAATAAGTTGTTATAAG+GGG + chr3_4:21952012-21952031 Msa0494220:intron 30.0%
AAAGTAAAATGGGTCAAACA+GGG - chr3_4:21952603-21952622 None:intergenic 30.0%
AAAAGTAAAATGGGTCAAAC+AGG - chr3_4:21952604-21952623 None:intergenic 30.0%
CTTTGGTCTCTATATGAAAA+AGG - chr3_4:21952694-21952713 None:intergenic 30.0%
GCAAACTGAATTTAGTACTT+TGG - chr3_4:21952711-21952730 None:intergenic 30.0%
TAATGACTGCAACTTATTTC+TGG + chr3_4:21952777-21952796 Msa0494220:intron 30.0%
TGCAAATTGTTGTCAAATAG+AGG + chr3_4:21952880-21952899 Msa0494220:intron 30.0%
CATAATTAAACGTTAGGTAG+GGG - chr3_4:21953036-21953055 None:intergenic 30.0%
AAGTTAGCGAAATTGGAAAA+AGG - chr3_4:21953277-21953296 None:intergenic 30.0%
AACTTAAATGCATGTTAGCA+AGG - chr3_4:21953330-21953349 None:intergenic 30.0%
!! CTAACATGCATTTAAGTTGA+AGG + chr3_4:21953332-21953351 Msa0494220:intron 30.0%
TGTGATGTAAGTTTCAAACT+TGG + chr3_4:21953370-21953389 Msa0494220:intron 30.0%
GTGATGTAAGTTTCAAACTT+GGG + chr3_4:21953371-21953390 Msa0494220:intron 30.0%
!! TTATTTCTCCACTTTTCAAG+TGG + chr3_4:21953538-21953557 Msa0494220:intron 30.0%
!! ATGAGTCGATTTTTATGATG+AGG + chr3_4:21953886-21953905 Msa0494220:intron 30.0%
AGAGCCTAAAACAATATACT+AGG + chr3_4:21953928-21953947 Msa0494220:intron 30.0%
GAGCCTAAAACAATATACTA+GGG + chr3_4:21953929-21953948 Msa0494220:intron 30.0%
AGAGTTGTAACACTACTTTA+TGG - chr3_4:21953966-21953985 None:intergenic 30.0%
TATACAACTTCACCCTAAAA+AGG + chr3_4:21954011-21954030 Msa0494220:intron 30.0%
ATACAACTTCACCCTAAAAA+GGG + chr3_4:21954012-21954031 Msa0494220:intron 30.0%
! ACCTATCATTTCCCTTTTTA+GGG - chr3_4:21954026-21954045 None:intergenic 30.0%
! TGAAAAATCCATAGAAGTGT+TGG + chr3_4:21954076-21954095 Msa0494220:CDS 30.0%
AACATTAACCAACACTTCTA+TGG - chr3_4:21954087-21954106 None:intergenic 30.0%
GGAAATACATCACTTGATAA+CGG + chr3_4:21954131-21954150 Msa0494220:CDS 30.0%
!! TATTTTTCGGTTGAAGAAGA+TGG + chr3_4:21954167-21954186 Msa0494220:CDS 30.0%
GTATTTATGTGCTATATTGG+AGG + chr3_4:21954347-21954366 Msa0494220:intron 30.0%
TAACAGGGTTATATCAAGTT+GGG - chr3_4:21954600-21954619 None:intergenic 30.0%
AGATCATATGATCAGATAAC+GGG - chr3_4:21954641-21954660 None:intergenic 30.0%
GAGATCATATGATCAGATAA+CGG - chr3_4:21954642-21954661 None:intergenic 30.0%
TCTCTTACATCAAGTTCTTA+TGG + chr3_4:21954658-21954677 Msa0494220:intron 30.0%
GTTCTTATGGTTAGACATTA+TGG + chr3_4:21954671-21954690 Msa0494220:intron 30.0%
TTACATTATGCCTTAGAATC+TGG + chr3_4:21954704-21954723 Msa0494220:intron 30.0%
TACATTATGCCTTAGAATCT+GGG + chr3_4:21954705-21954724 Msa0494220:intron 30.0%
GTGTAGTGCATATAAAGTTA+GGG - chr3_4:21954760-21954779 None:intergenic 30.0%
AGTGTAGTGCATATAAAGTT+AGG - chr3_4:21954761-21954780 None:intergenic 30.0%
TAACTTTATATGCACTACAC+TGG + chr3_4:21954760-21954779 Msa0494220:intron 30.0%
CTAGTATGATATTGGACATT+CGG + chr3_4:21954902-21954921 Msa0494220:intron 30.0%
CAACATTCTTCATCTCATAA+AGG - chr3_4:21954985-21955004 None:intergenic 30.0%
CTTTATGAGATGAAGAATGT+TGG + chr3_4:21954983-21955002 Msa0494220:intron 30.0%
TTGTCAAATAATGGCTATAG+TGG - chr3_4:21955136-21955155 None:intergenic 30.0%
!! AACGAAGTGTTGTCAAATAA+TGG - chr3_4:21955145-21955164 None:intergenic 30.0%
ACAACACTAGGTTTAACATT+AGG + chr3_4:21955260-21955279 Msa0494220:intron 30.0%
CAACACTAGGTTTAACATTA+GGG + chr3_4:21955261-21955280 Msa0494220:intron 30.0%
! AAGCTCCTCTTCAATTTTTA+TGG + chr3_4:21955648-21955667 Msa0494220:intron 30.0%
AGAACATTGTGTAAAATGAG+TGG - chr3_4:21955782-21955801 None:intergenic 30.0%
CGATTATGTTTCAGAAAGTT+AGG + chr3_4:21955832-21955851 Msa0494220:intron 30.0%
GTACAAACAATCTTAAACCT+TGG - chr3_4:21956059-21956078 None:intergenic 30.0%
AATGGAAAGATTTGGGTAAA+AGG + chr3_4:21956084-21956103 Msa0494220:intron 30.0%
! AACCTTAGGTTTGATTTAGA+AGG + chr3_4:21956186-21956205 Msa0494220:intron 30.0%
TTCCTTCAGTGAAAAAACTA+GGG - chr3_4:21956280-21956299 None:intergenic 30.0%
ATCACCATAGAGAAGAAATT+TGG + chr3_4:21956375-21956394 Msa0494220:intron 30.0%
TCACCATAGAGAAGAAATTT+GGG + chr3_4:21956376-21956395 Msa0494220:intron 30.0%
TTTCCCAAATTTCTTCTCTA+TGG - chr3_4:21956382-21956401 None:intergenic 30.0%
AGTAAGAAAACTGTTTGCAA+GGG + chr3_4:21956425-21956444 Msa0494220:intron 30.0%
AGAGAATAATCTGTACACAA+TGG - chr3_4:21956686-21956705 None:intergenic 30.0%
CCTTAAAGATATGCTATCAT+TGG - chr3_4:21956765-21956784 None:intergenic 30.0%
CCAATGATAGCATATCTTTA+AGG + chr3_4:21956762-21956781 Msa0494220:CDS 30.0%
GTCATTATACACATAGCAAA+AGG + chr3_4:21956855-21956874 Msa0494220:intron 30.0%
! CCAGATAGGTCAATTATTTT+CGG - chr3_4:21956921-21956940 None:intergenic 30.0%
ATAGTACCCTTGATATGTAT+TGG + chr3_4:21956998-21957017 Msa0494220:intron 30.0%
AAATGCATAGTAGAATATGC+TGG + chr3_4:21957039-21957058 Msa0494220:intron 30.0%
ATAGTAGAATATGCTGGATT+GGG + chr3_4:21957045-21957064 Msa0494220:intron 30.0%
GAAAATTGAAAAGGTCAAGA+CGG + chr3_4:21957118-21957137 Msa0494220:intron 30.0%
GCAAATTGTAAAATGGTAGA+TGG + chr3_4:21957327-21957346 Msa0494220:exon 30.0%
CTTCAAAAATTGGAGCTTAT+TGG - chr3_4:21957386-21957405 None:intergenic 30.0%
!! AATATTAACCAAGAGGCGTT+AGG - chr3_4:21949844-21949863 None:intergenic 35.0%
CTTTGACATGGCGAAATTAT+TGG - chr3_4:21949879-21949898 None:intergenic 35.0%
ATAATTTCGCCATGTCAAAG+AGG + chr3_4:21949879-21949898 Msa0494220:exon 35.0%
TCTATCTTACCTCTTTGACA+TGG - chr3_4:21949891-21949910 None:intergenic 35.0%
ATTGAAGTAGGAACACAATC+AGG + chr3_4:21950385-21950404 Msa0494220:intron 35.0%
ATCTTGGAAATATCTCTCCT+CGG + chr3_4:21950458-21950477 Msa0494220:intron 35.0%
! ATGCTTTGTGTTTTCGTTTG+CGG + chr3_4:21950782-21950801 Msa0494220:intron 35.0%
CTTTGTAAGTTCTTTGCTCA+TGG + chr3_4:21950926-21950945 Msa0494220:CDS 35.0%
! ATTGTGAGTTTTCTCATGAC+TGG + chr3_4:21950969-21950988 Msa0494220:CDS 35.0%
TATCACCAACATTATTCGGA+GGG - chr3_4:21951000-21951019 None:intergenic 35.0%
!! TTGGACATTTCACCGATTTA+TGG + chr3_4:21951034-21951053 Msa0494220:intron 35.0%
TATTGAAGAAGATGGAGTAG+AGG - chr3_4:21951198-21951217 None:intergenic 35.0%
TGTTCGGTTATTGAAGAAGA+TGG - chr3_4:21951206-21951225 None:intergenic 35.0%
GGAAGATGATGTTGTTCAAT+CGG + chr3_4:21951382-21951401 Msa0494220:CDS 35.0%
!! AAATAAGCAAAAGCATCTCG+AGG + chr3_4:21951574-21951593 Msa0494220:CDS 35.0%
GCGTATCGTGTATTAGAAAT+TGG + chr3_4:21951711-21951730 Msa0494220:CDS 35.0%
GTAGTAGTAACCCAACATTA+GGG + chr3_4:21951735-21951754 Msa0494220:CDS 35.0%
TAACATCCATCCCTAATGTT+GGG - chr3_4:21951748-21951767 None:intergenic 35.0%
TTAACATCCATCCCTAATGT+TGG - chr3_4:21951749-21951768 None:intergenic 35.0%
! TTGTCGTTCCAAGTGTTATT+TGG + chr3_4:21951813-21951832 Msa0494220:CDS 35.0%
GTAGCATACCAAATAACACT+TGG - chr3_4:21951824-21951843 None:intergenic 35.0%
GGAAATCATTGATACCTACA+AGG + chr3_4:21951859-21951878 Msa0494220:CDS 35.0%
GAAGACATAAATAGATGCTG+TGG - chr3_4:21951911-21951930 None:intergenic 35.0%
!! TAGCATTGATATGCATGTGT+AGG + chr3_4:21952052-21952071 Msa0494220:intron 35.0%
!! AGCATTGATATGCATGTGTA+GGG + chr3_4:21952053-21952072 Msa0494220:intron 35.0%
GCAAAAAGCTAGACACATTA+GGG - chr3_4:21952429-21952448 None:intergenic 35.0%
AGCAAAAAGCTAGACACATT+AGG - chr3_4:21952430-21952449 None:intergenic 35.0%
GCAATCAATTGACCTACAAA+TGG - chr3_4:21952482-21952501 None:intergenic 35.0%
!!! GATTGCAAGCATTTTGACTT+TGG + chr3_4:21952496-21952515 Msa0494220:intron 35.0%
GGTATAGCACTATAGTGTAA+GGG + chr3_4:21952920-21952939 Msa0494220:intron 35.0%
GGTACTAGTATTATCAATCG+CGG - chr3_4:21952975-21952994 None:intergenic 35.0%
! TAGGCTCTAGTTGTTCTTTA+AGG - chr3_4:21953103-21953122 None:intergenic 35.0%
TAAAGATGAGAACCAGGATA+AGG - chr3_4:21953253-21953272 None:intergenic 35.0%
AAAGGATAAAGATGAGAACC+AGG - chr3_4:21953259-21953278 None:intergenic 35.0%
ACTTAATACATGATGCCATC+AGG + chr3_4:21953293-21953312 Msa0494220:intron 35.0%
!! CATGCATTTAAGTTGAAGGT+CGG + chr3_4:21953336-21953355 Msa0494220:intron 35.0%
TTGTATCCAATGCTTCAACA+TGG + chr3_4:21953456-21953475 Msa0494220:intron 35.0%
! TATCTATGCCACTTGAAAAG+TGG - chr3_4:21953549-21953568 None:intergenic 35.0%
GCATAGATAAATTGCACCTT+GGG + chr3_4:21953560-21953579 Msa0494220:intron 35.0%
! TACAACTAAGCTATTTCCCA+AGG - chr3_4:21953579-21953598 None:intergenic 35.0%
TTGGGAAATAGCTTAGTTGT+AGG + chr3_4:21953578-21953597 Msa0494220:intron 35.0%
!!! TTTTTTTTCCTTGAGCGGTA+TGG - chr3_4:21953689-21953708 None:intergenic 35.0%
ACATTGATGAGTGCAACAAA+TGG + chr3_4:21953827-21953846 Msa0494220:intron 35.0%
ATGATGAGGACACACTAAAT+TGG + chr3_4:21953900-21953919 Msa0494220:intron 35.0%
TGATGAGGACACACTAAATT+GGG + chr3_4:21953901-21953920 Msa0494220:intron 35.0%
ACCCTAAAAAGGGAAATGAT+AGG + chr3_4:21954022-21954041 Msa0494220:intron 35.0%
! CACCTATCATTTCCCTTTTT+AGG - chr3_4:21954027-21954046 None:intergenic 35.0%
CTAAAAAGGGAAATGATAGG+TGG + chr3_4:21954025-21954044 Msa0494220:intron 35.0%
ATTTCCATCTACTTCTGCTT+TGG - chr3_4:21954117-21954136 None:intergenic 35.0%
!! CGTCATTTTCATCAAGTTCA+AGG - chr3_4:21954211-21954230 None:intergenic 35.0%
CAAGTGTTCTCAATGATAGA+TGG - chr3_4:21954388-21954407 None:intergenic 35.0%
ACTTGTTCGTAGCAAGAATA+AGG + chr3_4:21954403-21954422 Msa0494220:intron 35.0%
! AAGTTGGGGTATCACAATTT+CGG - chr3_4:21954585-21954604 None:intergenic 35.0%
! AACAGGGTTATATCAAGTTG+GGG - chr3_4:21954599-21954618 None:intergenic 35.0%
CTAACAGGGTTATATCAAGT+TGG - chr3_4:21954601-21954620 None:intergenic 35.0%
ACTTGATATAACCCTGTTAG+TGG + chr3_4:21954601-21954620 Msa0494220:intron 35.0%
!! GGGTTTTGTAAGATTGAGTT+AGG - chr3_4:21954736-21954755 None:intergenic 35.0%
AGTGCATATAAAGTTAGGGA+GGG - chr3_4:21954756-21954775 None:intergenic 35.0%
TAGTGCATATAAAGTTAGGG+AGG - chr3_4:21954757-21954776 None:intergenic 35.0%
AACCAAATGCCGTAATTAGA+CGG + chr3_4:21954829-21954848 Msa0494220:intron 35.0%
! AAGGAAGCACATCATTTCTT+TGG + chr3_4:21954934-21954953 Msa0494220:intron 35.0%
! AGGAAGCACATCATTTCTTT+GGG + chr3_4:21954935-21954954 Msa0494220:intron 35.0%
ATGATCAAAGAAAGAGACCA+TGG + chr3_4:21955032-21955051 Msa0494220:intron 35.0%
ATAGCGTGTTGTGGAATAAT+AGG + chr3_4:21955169-21955188 Msa0494220:intron 35.0%
CATTTGCCAAATAGCAGATA+TGG - chr3_4:21955240-21955259 None:intergenic 35.0%
ATTTGGCAAATGACAACACT+AGG + chr3_4:21955248-21955267 Msa0494220:intron 35.0%
AAGTGAAGAAGCAACCATTT+GGG - chr3_4:21955454-21955473 None:intergenic 35.0%
AAAGTGAAGAAGCAACCATT+TGG - chr3_4:21955455-21955474 None:intergenic 35.0%
GGAAGCTATTAAGACAACTA+TGG - chr3_4:21955553-21955572 None:intergenic 35.0%
CTTCTTGTGAATTGACATCA+AGG - chr3_4:21955744-21955763 None:intergenic 35.0%
TCTCATATAAAGCTAGGTGA+GGG - chr3_4:21955876-21955895 None:intergenic 35.0%
ACGTACTCTCATATAAAGCT+AGG - chr3_4:21955882-21955901 None:intergenic 35.0%
! GACATGCTTTATTCATGTCA+TGG + chr3_4:21955902-21955921 Msa0494220:intron 35.0%
TAAATACCGCTTAAGATCCA+AGG + chr3_4:21956039-21956058 Msa0494220:intron 35.0%
CTTAAACCTTGGATCTTAAG+CGG - chr3_4:21956048-21956067 None:intergenic 35.0%
! AAAGGTAGAAAGTACATCCA+TGG + chr3_4:21956102-21956121 Msa0494220:intron 35.0%
! AAGGTAGAAAGTACATCCAT+GGG + chr3_4:21956103-21956122 Msa0494220:intron 35.0%
CTCATACTACAACTAACCTT+AGG + chr3_4:21956172-21956191 Msa0494220:intron 35.0%
CACCTTCTAAATCAAACCTA+AGG - chr3_4:21956191-21956210 None:intergenic 35.0%
GGGATTGTGAAGAGAAAAAT+AGG - chr3_4:21956214-21956233 None:intergenic 35.0%
CTTCCTTCAGTGAAAAAACT+AGG - chr3_4:21956281-21956300 None:intergenic 35.0%
GAACTTGATGAAATAGTCCT+TGG + chr3_4:21956304-21956323 Msa0494220:intron 35.0%
GAGTAAGAAAACTGTTTGCA+AGG + chr3_4:21956424-21956443 Msa0494220:intron 35.0%
CAAGGGAAATTGTCTATCAT+GGG + chr3_4:21956442-21956461 Msa0494220:intron 35.0%
GAAATTGTCTATCATGGGTT+TGG + chr3_4:21956447-21956466 Msa0494220:intron 35.0%
!! CGTAGTATTTGTGCTATTTG+AGG - chr3_4:21956569-21956588 None:intergenic 35.0%
AGTGTTAAGGCAAACCTTAA+GGG - chr3_4:21956624-21956643 None:intergenic 35.0%
CATAAAAGCTGTCAAACACA+TGG - chr3_4:21956657-21956676 None:intergenic 35.0%
! CATGTGTTTGACAGCTTTTA+TGG + chr3_4:21956655-21956674 Msa0494220:intron 35.0%
GCCAAAACAGTAAATGGAAA+GGG - chr3_4:21956723-21956742 None:intergenic 35.0%
AGCCAAAACAGTAAATGGAA+AGG - chr3_4:21956724-21956743 None:intergenic 35.0%
AGAAGAGCCAAAACAGTAAA+TGG - chr3_4:21956729-21956748 None:intergenic 35.0%
! GCATATCTTTAAGGGAGATA+TGG + chr3_4:21956771-21956790 Msa0494220:CDS 35.0%
TTAGGACGACAAGTGAATAA+GGG - chr3_4:21956814-21956833 None:intergenic 35.0%
! TTTAGGACGACAAGTGAATA+AGG - chr3_4:21956815-21956834 None:intergenic 35.0%
! CTCTAGATTCCTTCTTGTTT+AGG - chr3_4:21956832-21956851 None:intergenic 35.0%
! GTCAATTATTTTCGGACTGA+GGG - chr3_4:21956913-21956932 None:intergenic 35.0%
CCGAAAATAATTGACCTATC+TGG + chr3_4:21956918-21956937 Msa0494220:intron 35.0%
TATGTGTGAAATGACCAGAT+AGG - chr3_4:21956935-21956954 None:intergenic 35.0%
CATAGTAGAATATGCTGGAT+TGG + chr3_4:21957044-21957063 Msa0494220:intron 35.0%
! TTAGAGCATCTTAATCGCTA+GGG - chr3_4:21957158-21957177 None:intergenic 35.0%
! TTTAGAGCATCTTAATCGCT+AGG - chr3_4:21957159-21957178 None:intergenic 35.0%
! AACTACAGTGTACACCATTT+TGG + chr3_4:21957441-21957460 Msa0494220:three_prime_UTR 35.0%
!! TGTACACCATTTTGGTCATA+TGG + chr3_4:21957449-21957468 Msa0494220:three_prime_UTR 35.0%
!! GTACACCATTTTGGTCATAT+GGG + chr3_4:21957450-21957469 Msa0494220:three_prime_UTR 35.0%
!! TACACCATTTTGGTCATATG+GGG + chr3_4:21957451-21957470 Msa0494220:three_prime_UTR 35.0%
! GAATTTGTCAGGAGACTTTT+GGG + chr3_4:21957679-21957698 Msa0494220:three_prime_UTR 35.0%
! AATTTGTCAGGAGACTTTTG+GGG + chr3_4:21957680-21957699 Msa0494220:three_prime_UTR 35.0%
TTGAATGAGACACAACACAG+AGG - chr3_4:21949601-21949620 None:intergenic 40.0%
!! CTCAATCAAGAAGCACTTTG+AGG + chr3_4:21949794-21949813 Msa0494220:five_prime_UTR 40.0%
!! AATCAAGAAGCACTTTGAGG+AGG + chr3_4:21949797-21949816 Msa0494220:five_prime_UTR 40.0%
! AAGCACTTTGAGGAGGTTTA+GGG + chr3_4:21949804-21949823 Msa0494220:five_prime_UTR 40.0%
ACATCACAAGGCAACTAAAG+AGG - chr3_4:21950421-21950440 None:intergenic 40.0%
TTAGTTGCCTTGTGATGTTG+AGG + chr3_4:21950423-21950442 Msa0494220:intron 40.0%
TCTTGGAAATATCTCTCCTC+GGG + chr3_4:21950459-21950478 Msa0494220:intron 40.0%
TTTGAGCGGTGAAAAACTTG+CGG + chr3_4:21950504-21950523 Msa0494220:intron 40.0%
GACATACATAGCGAGTGTTT+GGG - chr3_4:21950632-21950651 None:intergenic 40.0%
AGACATACATAGCGAGTGTT+TGG - chr3_4:21950633-21950652 None:intergenic 40.0%
! TCTAGAATAAAAAGGGGCAC+CGG - chr3_4:21950694-21950713 None:intergenic 40.0%
!!! GACTTTTTAAGGCCGTGATA+AGG + chr3_4:21950714-21950733 Msa0494220:intron 40.0%
! TGTTTTCGTTTGCGGAAACA+TGG + chr3_4:21950790-21950809 Msa0494220:intron 40.0%
TTTGCGGAAACATGGTTAGA+AGG + chr3_4:21950798-21950817 Msa0494220:intron 40.0%
ATAAGAACAGTCTGCACACA+AGG - chr3_4:21950870-21950889 None:intergenic 40.0%
ATCACCAACATTATTCGGAG+GGG - chr3_4:21950999-21951018 None:intergenic 40.0%
GTATCACCAACATTATTCGG+AGG - chr3_4:21951001-21951020 None:intergenic 40.0%
CAGAAAGGAGTTTGTGCTTA+TGG + chr3_4:21951128-21951147 Msa0494220:CDS 40.0%
!! TACAGCCGATTCTGAAACAA+GGG - chr3_4:21951234-21951253 None:intergenic 40.0%
AATACCCGAGTTACATCGAA+TGG + chr3_4:21951260-21951279 Msa0494220:CDS 40.0%
AACACCATTCGATGTAACTC+GGG - chr3_4:21951267-21951286 None:intergenic 40.0%
CAACACCATTCGATGTAACT+CGG - chr3_4:21951268-21951287 None:intergenic 40.0%
TGTTCACTGGGAAGAACAAA+GGG - chr3_4:21951323-21951342 None:intergenic 40.0%
TTGTTCACTGGGAAGAACAA+AGG - chr3_4:21951324-21951343 None:intergenic 40.0%
TTGTGCAGATTCTTGATTCC+AGG - chr3_4:21951348-21951367 None:intergenic 40.0%
TGCACAACTTGACTTCCTAA+GGG + chr3_4:21951361-21951380 Msa0494220:CDS 40.0%
GAACAACATCATCTTCCCTT+AGG - chr3_4:21951379-21951398 None:intergenic 40.0%
GCAGCAGCAAATGAACAAAT+CGG - chr3_4:21951431-21951450 None:intergenic 40.0%
! ATTTGTTCATTTGCTGCTGC+TGG + chr3_4:21951431-21951450 Msa0494220:CDS 40.0%
GAACAATGTCCTCATGTACA+TGG + chr3_4:21951470-21951489 Msa0494220:CDS 40.0%
! AAGCATTGTCTTCCACATGA+GGG - chr3_4:21951506-21951525 None:intergenic 40.0%
CTAATACACGATACGCAGAA+CGG - chr3_4:21951707-21951726 None:intergenic 40.0%
CGTAGTAGTAACCCAACATT+AGG + chr3_4:21951734-21951753 Msa0494220:CDS 40.0%
TAGTAACCCAACATTAGGGA+TGG + chr3_4:21951739-21951758 Msa0494220:CDS 40.0%
TGGATGTTAATAGCACACTG+CGG + chr3_4:21951759-21951778 Msa0494220:CDS 40.0%
! TAAGATAGCTTGCGACAGAT+AGG - chr3_4:21951791-21951810 None:intergenic 40.0%
TTACTTGAGCTTTGCCTTGT+AGG - chr3_4:21951876-21951895 None:intergenic 40.0%
! GCATTGATATGCATGTGTAG+GGG + chr3_4:21952054-21952073 Msa0494220:intron 40.0%
AAGCATGTGTGAGACTGTTT+GGG - chr3_4:21952365-21952384 None:intergenic 40.0%
TAAGCATGTGTGAGACTGTT+TGG - chr3_4:21952366-21952385 None:intergenic 40.0%
!! TAGACACATTAGGGCTAGTT+TGG - chr3_4:21952420-21952439 None:intergenic 40.0%
!!! AAGCATTTTGACTTTGGCGA+AGG + chr3_4:21952502-21952521 Msa0494220:intron 40.0%
ATTTACCTTGTAGAAGCAGC+TGG - chr3_4:21952545-21952564 None:intergenic 40.0%
TAAAATGGGTCAAACAGGGA+GGG - chr3_4:21952599-21952618 None:intergenic 40.0%
! AAGTTGCAGTCATTAGCTTC+AGG - chr3_4:21952772-21952791 None:intergenic 40.0%
CGGTATAGCACTATAGTGTA+AGG + chr3_4:21952919-21952938 Msa0494220:intron 40.0%
CCTGATGTCTTTGGCAATTA+TGG - chr3_4:21953220-21953239 None:intergenic 40.0%
CCATAATTGCCAAAGACATC+AGG + chr3_4:21953217-21953236 Msa0494220:CDS 40.0%
AGAGAGAAACCTGATGTCTT+TGG - chr3_4:21953229-21953248 None:intergenic 40.0%
GGCATAGATAAATTGCACCT+TGG + chr3_4:21953559-21953578 Msa0494220:intron 40.0%
!! ATGATAGGTGGTTGATGATG+AGG + chr3_4:21954037-21954056 Msa0494220:intron 40.0%
!! GGTTGATGATGAGGAATTTG+AGG + chr3_4:21954046-21954065 Msa0494220:CDS 40.0%
GATGAGGAATTTGAGGAGAA+TGG + chr3_4:21954053-21954072 Msa0494220:CDS 40.0%
TTGTCCAAAGCAGAAGTAGA+TGG + chr3_4:21954110-21954129 Msa0494220:CDS 40.0%
GTGTTCTCAATGATAGATGG+CGG - chr3_4:21954385-21954404 None:intergenic 40.0%
TTAGTTGACTGTAGCTGTGT+TGG + chr3_4:21954471-21954490 Msa0494220:intron 40.0%
TAACAAGGTCACCACTAACA+GGG - chr3_4:21954615-21954634 None:intergenic 40.0%
!! TCAGATAACGGGTTGTAACA+AGG - chr3_4:21954630-21954649 None:intergenic 40.0%
ACTACACTGGTCATATCTCT+AGG + chr3_4:21954773-21954792 Msa0494220:intron 40.0%
CATATCTCTAGGCAATGTGA+AGG + chr3_4:21954784-21954803 Msa0494220:intron 40.0%
ATCCGTCTAATTACGGCATT+TGG - chr3_4:21954834-21954853 None:intergenic 40.0%
AATGCCGTAATTAGACGGAT+AGG + chr3_4:21954834-21954853 Msa0494220:intron 40.0%
ATGCCGTAATTAGACGGATA+GGG + chr3_4:21954835-21954854 Msa0494220:intron 40.0%
AGGCGGAATTTCCAACATTA+TGG + chr3_4:21954872-21954891 Msa0494220:intron 40.0%
GGCGGAATTTCCAACATTAT+GGG + chr3_4:21954873-21954892 Msa0494220:intron 40.0%
GCGGAATTTCCAACATTATG+GGG + chr3_4:21954874-21954893 Msa0494220:intron 40.0%
CGGAATTTCCAACATTATGG+GGG + chr3_4:21954875-21954894 Msa0494220:intron 40.0%
TGATATTGGACATTCGGACT+AGG + chr3_4:21954908-21954927 Msa0494220:intron 40.0%
! GGAAGCACATCATTTCTTTG+GGG + chr3_4:21954936-21954955 Msa0494220:intron 40.0%
! TCACAACACTGATTAGACCA+TGG - chr3_4:21955052-21955071 None:intergenic 40.0%
! TCGTTCTAAATAGCGTGTTG+TGG + chr3_4:21955160-21955179 Msa0494220:intron 40.0%
! GCTAAGGCGCTATAGATTAA+CGG - chr3_4:21955213-21955232 None:intergenic 40.0%
TTGCCAAATAGCAGATATGG+CGG - chr3_4:21955237-21955256 None:intergenic 40.0%
GGATAGCAGCAATCTAAGTT+TGG - chr3_4:21955327-21955346 None:intergenic 40.0%
TCATATAAAGCTAGGTGAGG+GGG - chr3_4:21955874-21955893 None:intergenic 40.0%
CTCATATAAAGCTAGGTGAG+GGG - chr3_4:21955875-21955894 None:intergenic 40.0%
CTCTCATATAAAGCTAGGTG+AGG - chr3_4:21955877-21955896 None:intergenic 40.0%
! AGGTAGAAAGTACATCCATG+GGG + chr3_4:21956104-21956123 Msa0494220:intron 40.0%
!! ATGTTCTAAGAACTCCAGAG+AGG - chr3_4:21956148-21956167 None:intergenic 40.0%
TTCACAATCCCATTGTGATG+TGG + chr3_4:21956223-21956242 Msa0494220:intron 40.0%
TCACAACACCACATCACAAT+GGG - chr3_4:21956234-21956253 None:intergenic 40.0%
!!! TGCCCTAGTTTTTTCACTGA+AGG + chr3_4:21956275-21956294 Msa0494220:intron 40.0%
ATTAATGTCTGGCAATGCCA+AGG - chr3_4:21956324-21956343 None:intergenic 40.0%
GCAAGGGAAATTGTCTATCA+TGG + chr3_4:21956441-21956460 Msa0494220:intron 40.0%
! TTGTCTATCATGGGTTTGGT+CGG + chr3_4:21956451-21956470 Msa0494220:intron 40.0%
CAGTGTTAAGGCAAACCTTA+AGG - chr3_4:21956625-21956644 None:intergenic 40.0%
GTTTGCCTTAACACTGAACT+TGG + chr3_4:21956629-21956648 Msa0494220:intron 40.0%
! GCCCTTTCCATTTACTGTTT+TGG + chr3_4:21956719-21956738 Msa0494220:CDS 40.0%
! TCTTTAAGGGAGATATGGTC+AGG + chr3_4:21956776-21956795 Msa0494220:CDS 40.0%
ATATGGTCAGGTCATTCTTG+TGG + chr3_4:21956788-21956807 Msa0494220:intron 40.0%
ACTTGTCGTCCTAAACAAGA+AGG + chr3_4:21956820-21956839 Msa0494220:intron 40.0%
CTGAGGGAGTAATTCATAAC+AGG - chr3_4:21956897-21956916 None:intergenic 40.0%
! GGTCAATTATTTTCGGACTG+AGG - chr3_4:21956914-21956933 None:intergenic 40.0%
!! ATTTTGGTCATATGGGGAGA+GGG + chr3_4:21957457-21957476 Msa0494220:three_prime_UTR 40.0%
TGACATTGCACCAAGAATCT+TGG + chr3_4:21957615-21957634 Msa0494220:three_prime_UTR 40.0%
GACATTGCACCAAGAATCTT+GGG + chr3_4:21957616-21957635 Msa0494220:three_prime_UTR 40.0%
! GGAATTTGTCAGGAGACTTT+TGG + chr3_4:21957678-21957697 Msa0494220:three_prime_UTR 40.0%
ACACAACACAGAGGTTAGGT+TGG - chr3_4:21949592-21949611 None:intergenic 45.0%
TGAGACACAACACAGAGGTT+AGG - chr3_4:21949596-21949615 None:intergenic 45.0%
TGAGGTAGCCAAAAAACGTG+AGG - chr3_4:21949743-21949762 None:intergenic 45.0%
! GAAGCACTTTGAGGAGGTTT+AGG + chr3_4:21949803-21949822 Msa0494220:five_prime_UTR 45.0%
ACTTTGATCCTAACGCCTCT+TGG + chr3_4:21949833-21949852 Msa0494220:five_prime_UTR 45.0%
GAACACAATCAGGTTTCCAG+AGG + chr3_4:21950395-21950414 Msa0494220:intron 45.0%
! GAGGTCAGGGTGTTAAATCT+TGG + chr3_4:21950442-21950461 Msa0494220:intron 45.0%
CTTGGAAATATCTCTCCTCG+GGG + chr3_4:21950460-21950479 Msa0494220:intron 45.0%
TTGGAAATATCTCTCCTCGG+GGG + chr3_4:21950461-21950480 Msa0494220:intron 45.0%
! AATGCTGCTTGAATGCACGT+TGG + chr3_4:21950589-21950608 Msa0494220:intron 45.0%
ATAGCGAGTGTTTGGGAAAG+CGG - chr3_4:21950625-21950644 None:intergenic 45.0%
AAAGCCCCTCCGAATAATGT+TGG + chr3_4:21950992-21951011 Msa0494220:intron 45.0%
! GTGCTTGTGTTGTCTTGTTG+TGG + chr3_4:21951087-21951106 Msa0494220:intron 45.0%
!! ACAGCCGATTCTGAAACAAG+GGG - chr3_4:21951233-21951252 None:intergenic 45.0%
!! GTACAGCCGATTCTGAAACA+AGG - chr3_4:21951235-21951254 None:intergenic 45.0%
GTTTCAGAATCGGCTGTACT+TGG + chr3_4:21951236-21951255 Msa0494220:CDS 45.0%
! TGATTCCAGGCTTGTTCACT+GGG - chr3_4:21951335-21951354 None:intergenic 45.0%
! TTGATTCCAGGCTTGTTCAC+TGG - chr3_4:21951336-21951355 None:intergenic 45.0%
CTGCACAACTTGACTTCCTA+AGG + chr3_4:21951360-21951379 Msa0494220:CDS 45.0%
GAACAAATCGGAAGCTCAGA+AGG - chr3_4:21951419-21951438 None:intergenic 45.0%
GGAAATTTATGCCCCTCATG+TGG + chr3_4:21951491-21951510 Msa0494220:CDS 45.0%
AGCATTGTCTTCCACATGAG+GGG - chr3_4:21951505-21951524 None:intergenic 45.0%
! CAAGCATTGTCTTCCACATG+AGG - chr3_4:21951507-21951526 None:intergenic 45.0%
GACAATGCTTGCATCCTTTC+CGG + chr3_4:21951516-21951535 Msa0494220:CDS 45.0%
GTTCTTCTCTTTCTTCAGGC+CGG - chr3_4:21951538-21951557 None:intergenic 45.0%
GCGTGTTCTTTCAAAGCCTA+CGG + chr3_4:21951640-21951659 Msa0494220:CDS 45.0%
GGATGTTAATAGCACACTGC+GGG + chr3_4:21951760-21951779 Msa0494220:CDS 45.0%
AGACTGTTTGGGAGAGCTTA+AGG - chr3_4:21952354-21952373 None:intergenic 45.0%
!! ACATTAGGGCTAGTTTGGAC+AGG - chr3_4:21952415-21952434 None:intergenic 45.0%
GTAAAATGGGTCAAACAGGG+AGG - chr3_4:21952600-21952619 None:intergenic 45.0%
TAGTGCTATACCGCTGCTAT+AGG - chr3_4:21952912-21952931 None:intergenic 45.0%
TTGCAGCATGCATATCGTGA+TGG + chr3_4:21953144-21953163 Msa0494220:intron 45.0%
! AGGTAGCTTTGCGTCATCTT+GGG + chr3_4:21953178-21953197 Msa0494220:CDS 45.0%
GGTTTCTCTCTACCTTATCC+TGG + chr3_4:21953238-21953257 Msa0494220:intron 45.0%
! ACATGATGCCATCAGGTTGT+CGG + chr3_4:21953300-21953319 Msa0494220:intron 45.0%
AAGGAAATCCGACAACCTGA+TGG - chr3_4:21953311-21953330 None:intergenic 45.0%
AATGCTTCAACATGGTGCCT+GGG + chr3_4:21953464-21953483 Msa0494220:intron 45.0%
CATCATTTCTAACGAGACCC+AGG - chr3_4:21953484-21953503 None:intergenic 45.0%
TGAGTGCAACAAATGGCTAG+TGG + chr3_4:21953834-21953853 Msa0494220:intron 45.0%
GAGTGCAACAAATGGCTAGT+GGG + chr3_4:21953835-21953854 Msa0494220:intron 45.0%
AAATGGCTAGTGGGAGAGAA+TGG + chr3_4:21953844-21953863 Msa0494220:intron 45.0%
GTGCTATATTGGAGGACTTG+TGG + chr3_4:21954355-21954374 Msa0494220:intron 45.0%
GTAACAAGGTCACCACTAAC+AGG - chr3_4:21954616-21954635 None:intergenic 45.0%
TATGCCTTAGAATCTGGGTC+TGG + chr3_4:21954710-21954729 Msa0494220:intron 45.0%
! TCTAGGCAATGTGAAGGTGT+TGG + chr3_4:21954790-21954809 Msa0494220:intron 45.0%
TGCCGTAATTAGACGGATAG+GGG + chr3_4:21954836-21954855 Msa0494220:intron 45.0%
CTCCCCTATCCGTCTAATTA+CGG - chr3_4:21954841-21954860 None:intergenic 45.0%
TGGAAATTCCGCCTTTGTTG+CGG - chr3_4:21954866-21954885 None:intergenic 45.0%
GGGGTTCGCTAGTATGATAT+TGG + chr3_4:21954894-21954913 Msa0494220:intron 45.0%
GTATTCTGCAGAGACAACAC+AGG - chr3_4:21955574-21955593 None:intergenic 45.0%
! CAACAAAAAAGCTTCGGTGC+TGG - chr3_4:21955703-21955722 None:intergenic 45.0%
!!! CAGCACCGAAGCTTTTTTGT+TGG + chr3_4:21955701-21955720 Msa0494220:intron 45.0%
TGTATGAACAGCTTCCTCTC+TGG + chr3_4:21956131-21956150 Msa0494220:intron 45.0%
GTCACAACACCACATCACAA+TGG - chr3_4:21956235-21956254 None:intergenic 45.0%
! TGTCTATCATGGGTTTGGTC+GGG + chr3_4:21956452-21956471 Msa0494220:intron 45.0%
GATTTGATGGAGAAACTCGC+TGG + chr3_4:21956474-21956493 Msa0494220:intron 45.0%
TGGCTCCAAGTTCAGTGTTA+AGG - chr3_4:21956637-21956656 None:intergenic 45.0%
!! ATGGAAAGGGCATTGCACAA+AGG - chr3_4:21956710-21956729 None:intergenic 45.0%
CTCTCCCCATATGACCAAAA+TGG - chr3_4:21957458-21957477 None:intergenic 45.0%
!! CATTTTGGTCATATGGGGAG+AGG + chr3_4:21957456-21957475 Msa0494220:three_prime_UTR 45.0%
! TTTTGGTCATATGGGGAGAG+GGG + chr3_4:21957458-21957477 Msa0494220:three_prime_UTR 45.0%
GGTCATGTTCCCAAGATTCT+TGG - chr3_4:21957628-21957647 None:intergenic 45.0%
!!! TTTATATGAATTTAAAATAT+GGG + chr3_4:21957715-21957734 Msa0494220:three_prime_UTR 5.0%
AAGGCAACTAAAGAGGCCTC+TGG - chr3_4:21950414-21950433 None:intergenic 50.0%
TGCCTTGTGATGTTGAGGTC+AGG + chr3_4:21950428-21950447 Msa0494220:intron 50.0%
GCCTTGTGATGTTGAGGTCA+GGG + chr3_4:21950429-21950448 Msa0494220:intron 50.0%
ACCCTGACCTCAACATCACA+AGG - chr3_4:21950433-21950452 None:intergenic 50.0%
AATATCTCTCCTCGGGGGTA+AGG + chr3_4:21950466-21950485 Msa0494220:intron 50.0%
CGGTGAAAAACTTGCGGTGA+TGG + chr3_4:21950510-21950529 Msa0494220:intron 50.0%
!! GAATAAAAAGGGGCACCGGA+TGG - chr3_4:21950690-21950709 None:intergenic 50.0%
CTCATGGAGCGTGTCTGAAA+GGG + chr3_4:21950942-21950961 Msa0494220:CDS 50.0%
TCATGGAGCGTGTCTGAAAG+GGG + chr3_4:21950943-21950962 Msa0494220:CDS 50.0%
! TGAAACAAGGGGCTGGTGTT+CGG - chr3_4:21951222-21951241 None:intergenic 50.0%
! CCAGCCCCTTGTTTCAGAAT+CGG + chr3_4:21951226-21951245 Msa0494220:CDS 50.0%
TTCTTCCCAGTGAACAAGCC+TGG + chr3_4:21951327-21951346 Msa0494220:CDS 50.0%
TCTCTTTCTTCAGGCCGGAA+AGG - chr3_4:21951533-21951552 None:intergenic 50.0%
!! GCTTTGAAAGAACACGCTCG+AGG - chr3_4:21951637-21951656 None:intergenic 50.0%
GTTCAGAGTGACGCCCTATT+TGG + chr3_4:21952135-21952154 Msa0494220:intron 50.0%
! AGAAGCAGCTGGTACCGAAA+GGG - chr3_4:21952534-21952553 None:intergenic 50.0%
! TAGAAGCAGCTGGTACCGAA+AGG - chr3_4:21952535-21952554 None:intergenic 50.0%
GAGGCAATAGCCTATAGCAG+CGG + chr3_4:21952899-21952918 Msa0494220:intron 50.0%
ATATCGTGATGGCCGTCTTG+AGG + chr3_4:21953155-21953174 Msa0494220:CDS 50.0%
GCAAAGCTACCTCCTCAAGA+CGG - chr3_4:21953170-21953189 None:intergenic 50.0%
! GAGGTAGCTTTGCGTCATCT+TGG + chr3_4:21953177-21953196 Msa0494220:CDS 50.0%
! GGTAGCTTTGCGTCATCTTG+GGG + chr3_4:21953179-21953198 Msa0494220:CDS 50.0%
CAGGCACCATGTTGAAGCAT+TGG - chr3_4:21953465-21953484 None:intergenic 50.0%
CAATGCTTCAACATGGTGCC+TGG + chr3_4:21953463-21953482 Msa0494220:intron 50.0%
AAGCTTGACCATACCGCTCA+AGG + chr3_4:21953678-21953697 Msa0494220:intron 50.0%
TAGGCCAGACCCAGATTCTA+AGG - chr3_4:21954717-21954736 None:intergenic 50.0%
!! AGGCAATGTGAAGGTGTTGG+AGG + chr3_4:21954793-21954812 Msa0494220:intron 50.0%
CGTAATTAGACGGATAGGGG+AGG + chr3_4:21954839-21954858 Msa0494220:intron 50.0%
CTAGCGAACCCCCATAATGT+TGG - chr3_4:21954886-21954905 None:intergenic 50.0%
! GGACATTCGGACTAGGTAGA+AGG + chr3_4:21954915-21954934 Msa0494220:intron 50.0%
! GCTATAGCTTTACAGCGCAG+TGG - chr3_4:21955112-21955131 None:intergenic 50.0%
!! GAGGGGGTATTGATAAGACG+CGG - chr3_4:21955858-21955877 None:intergenic 50.0%
CTGTTCATACAGCAACCCCA+TGG - chr3_4:21956122-21956141 None:intergenic 50.0%
! TGGGTTTGGTCGGGATTTGA+TGG + chr3_4:21956461-21956480 Msa0494220:intron 50.0%
TTGATGGAGAAACTCGCTGG+TGG + chr3_4:21956477-21956496 Msa0494220:intron 50.0%
TGCGGATGAAAGAGCCCTTA+AGG + chr3_4:21956607-21956626 Msa0494220:intron 50.0%
GAGCATCTTAATCGCTAGGG+AGG - chr3_4:21957155-21957174 None:intergenic 50.0%
!! GCACAGTGCAGCTTTTTCTC+TGG - chr3_4:21957286-21957305 None:intergenic 50.0%
! TATGCATAGCCTTACCCCCG+AGG - chr3_4:21950478-21950497 None:intergenic 55.0%
TATCCTCCCCAGATTCCACC+TGG + chr3_4:21950652-21950671 Msa0494220:intron 55.0%
GCTCATGGAGCGTGTCTGAA+AGG + chr3_4:21950941-21950960 Msa0494220:CDS 55.0%
GTGCTTATGGTAGTCGCTGC+AGG + chr3_4:21951141-21951160 Msa0494220:CDS 55.0%
!! CCGATTCTGAAACAAGGGGC+TGG - chr3_4:21951229-21951248 None:intergenic 55.0%
CTGCTGGAAACTGTCCACGA+GGG + chr3_4:21951447-21951466 Msa0494220:CDS 55.0%
TGCTGGAAACTGTCCACGAG+GGG + chr3_4:21951448-21951467 Msa0494220:CDS 55.0%
TGAGGACATTGTTCCCCTCG+TGG - chr3_4:21951464-21951483 None:intergenic 55.0%
AACTTACGCTCAGCTGCCGT+AGG - chr3_4:21951659-21951678 None:intergenic 55.0%
ACGGCAGCTGAGCGTAAGTT+TGG + chr3_4:21951659-21951678 Msa0494220:CDS 55.0%
GGCGAAGGAAACTGCCCTTT+CGG + chr3_4:21952517-21952536 Msa0494220:CDS 55.0%
CGGTACCAGCTGCTTCTACA+AGG + chr3_4:21952537-21952556 Msa0494220:intron 55.0%
ATGGGTCAAACAGGGAGGGA+GGG - chr3_4:21952595-21952614 None:intergenic 55.0%
AATGGGTCAAACAGGGAGGG+AGG - chr3_4:21952596-21952615 None:intergenic 55.0%
ATAGGGGAGGACCGCAACAA+AGG + chr3_4:21954852-21954871 Msa0494220:intron 55.0%
TAGCAGATATGGCGGCGCTA+AGG - chr3_4:21955229-21955248 None:intergenic 55.0%
GCGCCGCCATATCTGCTATT+TGG + chr3_4:21955231-21955250 Msa0494220:intron 55.0%
!! CGGTGCTGGTGCATCTTGTT+TGG - chr3_4:21955689-21955708 None:intergenic 55.0%
ATGGAGAAACTCGCTGGTGG+TGG + chr3_4:21956480-21956499 Msa0494220:intron 55.0%
GGGCTCTTTCATCCGCACAA+GGG - chr3_4:21956604-21956623 None:intergenic 55.0%
AGGGCTCTTTCATCCGCACA+AGG - chr3_4:21956605-21956624 None:intergenic 55.0%
CTCCCCAGATTCCACCTGGT+GGG + chr3_4:21950656-21950675 Msa0494220:intron 60.0%
CTCCCACCAGGTGGAATCTG+GGG - chr3_4:21950661-21950680 None:intergenic 60.0%
GCTCCCACCAGGTGGAATCT+GGG - chr3_4:21950662-21950681 None:intergenic 60.0%
GCTGCTGGAAACTGTCCACG+AGG + chr3_4:21951446-21951465 Msa0494220:CDS 60.0%
TCGTGATGGCCGTCTTGAGG+AGG + chr3_4:21953158-21953177 Msa0494220:CDS 60.0%
CGTCATCTTGGGGCTGCAGA+TGG + chr3_4:21953189-21953208 Msa0494220:CDS 60.0%
AAACCATGCGCGCCCTTGTG+CGG + chr3_4:21956589-21956608 Msa0494220:intron 60.0%
CCACCAGGTGGAATCTGGGG+AGG - chr3_4:21950658-21950677 None:intergenic 65.0%
CCTCCCCAGATTCCACCTGG+TGG + chr3_4:21950655-21950674 Msa0494220:intron 65.0%
GGCTCCCACCAGGTGGAATC+TGG - chr3_4:21950663-21950682 None:intergenic 65.0%
TGGTGGGAGCCTCGTCCATC+CGG + chr3_4:21950672-21950691 Msa0494220:intron 65.0%
!! AAAGGGGCACCGGATGGACG+AGG - chr3_4:21950684-21950703 None:intergenic 65.0%
GGGGAGGACCGCAACAAAGG+CGG + chr3_4:21954855-21954874 Msa0494220:intron 65.0%
TGGACGAGGCTCCCACCAGG+TGG - chr3_4:21950670-21950689 None:intergenic 70.0%
GGATGGACGAGGCTCCCACC+AGG - chr3_4:21950673-21950692 None:intergenic 70.0%
! CATCCGCACAAGGGCGCGCA+TGG - chr3_4:21956595-21956614 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 21949558 21957767 21949558 ID=Msa0494220;Name=Msa0494220
chr3_4 mRNA 21949558 21957767 21949558 ID=Msa0494220-mRNA-1;Parent=Msa0494220;Name=Msa0494220-mRNA-1;_AED=0.11;_eAED=0.12;_QI=332|0.25|0.55|0.77|0.75|0.88|9|422|447
chr3_4 exon 21949558 21949900 21949558 ID=Msa0494220-mRNA-1:exon:5547;Parent=Msa0494220-mRNA-1
chr3_4 exon 21950922 21951009 21950922 ID=Msa0494220-mRNA-1:exon:5548;Parent=Msa0494220-mRNA-1
chr3_4 exon 21951113 21951891 21951113 ID=Msa0494220-mRNA-1:exon:5549;Parent=Msa0494220-mRNA-1
chr3_4 exon 21952505 21952538 21952505 ID=Msa0494220-mRNA-1:exon:5550;Parent=Msa0494220-mRNA-1
chr3_4 exon 21953150 21953238 21953150 ID=Msa0494220-mRNA-1:exon:5551;Parent=Msa0494220-mRNA-1
chr3_4 exon 21953354 21953375 21953354 ID=Msa0494220-mRNA-1:exon:5552;Parent=Msa0494220-mRNA-1
chr3_4 exon 21954044 21954188 21954044 ID=Msa0494220-mRNA-1:exon:5553;Parent=Msa0494220-mRNA-1
chr3_4 exon 21956696 21956797 21956696 ID=Msa0494220-mRNA-1:exon:5554;Parent=Msa0494220-mRNA-1
chr3_4 exon 21957272 21957767 21957272 ID=Msa0494220-mRNA-1:exon:5555;Parent=Msa0494220-mRNA-1
chr3_4 five_prime_UTR 21949558 21949889 21949558 ID=Msa0494220-mRNA-1:five_prime_utr;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21949890 21949900 21949890 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21950922 21951009 21950922 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21951113 21951891 21951113 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21952505 21952538 21952505 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21953150 21953238 21953150 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21953354 21953375 21953354 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21954044 21954188 21954044 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21956696 21956797 21956696 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 CDS 21957272 21957345 21957272 ID=Msa0494220-mRNA-1:cds;Parent=Msa0494220-mRNA-1
chr3_4 three_prime_UTR 21957346 21957767 21957346 ID=Msa0494220-mRNA-1:three_prime_utr;Parent=Msa0494220-mRNA-1
Gene Sequence

>Msa0494220

ATGTCAAAGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCGTGTCTGAAAGGGGAGCATTGTGAGTTTTCTCATGACTGGAAAGCCCCTCCGAATAATATATGCACATTTTATCAGAAAGGAGTTTGTGCTTATGGTAGTCGCTGCAGGTATGATCATGTCAAAGCTTCTCGAGCACAGTCCTCTACTCCATCTTCTTCAATAACCGAACACCAGCCCCTTGTTTCAGAATCGGCTGTACTTGGTAATACCCGAGTTACATCGAATGGTGTTGCTACAGCTGCAGAATTTTCTCTTTTCAGCACTCCCTTTGTTCTTCCCAGTGAACAAGCCTGGAATCAAGAATCTGCACAACTTGACTTCCTAAGGGAAGATGATGTTGTTCAATCGGTAATTACTTCACCTTCTGAGCTTCCGATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAACAATGTCCTCATGTACATGGAAATTTATGCCCCTCATGTGGAAGACAATGCTTGCATCCTTTCCGGCCTGAAGAAAGAGAAGAACATATGATGAGTTGCAAAAATAAGCAAAAGCATCTCGAGGCATTGAAAAGAAGTCAAGAAATTGAATGCAGTGTTTGCCTCGAGCGTGTTCTTTCAAAGCCTACGGCAGCTGAGCGTAAGTTTGGTCTGCTATCTGAATGTGATCATCCGTTCTGCGTATCGTGTATTAGAAATTGGCGTAGTAGTAACCCAACATTAGGGATGGATGTTAATAGCACACTGCGGGCTTGTCCTATCTGTCGCAAGCTATCTTACTTTGTCGTTCCAAGTGTTATTTGGTATGCTACAAGTGAAGAAAAAATGGAAATCATTGATACCTACAAGGCAAAGCTCAACATTTTGACTTTGGCGAAGGAAACTGCCCTTTCGCATGCATATCGTGATGGCCGTCTTGAGGAGGTAGCTTTGCGTCATCTTGGGGCTGCAGATGGCGACACCATAATTGCCAAAGACATCAGGTCGGTGTTCACATTTTGTGATGTGGTTGATGATGAGGAATTTGAGGAGAATGGTGAAAAATCCATAGAAGTGTTGGTTAATGTTGAGTTGTCCAAAGCAGAAGTAGATGGAAATACATCACTTGATAACGGCAATGAAGTTGATTATTTTTCGGTTGAAGAAGATGATTATTCTCTGCCTTTGTGCAATGCCCTTTCCATTTACTGTTTTGGCTCTTCTGTGTCTTTCTCTCCCAATGATAGCATATCTTTAAGGGAGATATGGTCAGTTTCAAAGGTACCAGAGAAAAAGCTGCACTGTGCATTCCATCATGTAATAAAAGTGCAAATTGTAAAATGGTAG
Protein sequence

>Msa0494220

MSKRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASRAQSSTPSSSITEHQPLVSESAVLGNTRVTSNGVATAAEFSLFSTPFVLPSEQAWNQESAQLDFLREDDVVQSVITSPSELPICSFAAAGNCPRGEQCPHVHGNLCPSCGRQCLHPFRPEEREEHMMSCKNKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCVSCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKMEIIDTYKAKLNILTLAKETALSHAYRDGRLEEVALRHLGAADGDTIIAKDIRSVFTFCDVVDDEEFEENGEKSIEVLVNVELSKAEVDGNTSLDNGNEVDYFSVEEDDYSLPLCNALSIYCFGSSVSFSPNDSISLREIWSVSKVPEKKLHCAFHHVIKVQIVKW*