AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0494410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0494410 MtrunA17_Chr3g0087891 92.486 346 14 1 1 334 1 346 0.0 660
Msa0494410 MtrunA17_Chr3g0087881 50.667 300 123 7 1 295 1 280 1.56e-83 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0494410 AT3G08505.1 57.225 346 102 4 1 334 1 312 5.57e-137 396
Msa0494410 AT3G08505.2 57.225 346 102 4 1 334 1 312 5.57e-137 396
Msa0494410 AT3G08505.3 57.225 346 102 4 1 334 1 312 5.57e-137 396

Find 132 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGACATGGCGAAATTAT+TGG 0.152147 3_4:-22299093 None:intergenic
CCAATGATAGCATATCTTTA+AGG 0.165297 3_4:+22305979 Msa0494410:CDS
GTTTATATGAATTTAAAATA+TGG 0.189355 3_4:+22306925 Msa0494410:three_prime_UTR
GCCCTTTCCATTTACTGTTT+TGG 0.192729 3_4:+22305936 Msa0494410:CDS
CCTGATGTCTTTGGCAATTA+TGG 0.200868 3_4:-22302434 None:intergenic
GAAGCACTTTGAGGAGGTTT+AGG 0.234779 3_4:+22299020 Msa0494410:five_prime_UTR
AACATTAACCAACACTTCTA+TGG 0.246705 3_4:-22303301 None:intergenic
TTACTTGAGCTTTGCCTTGT+AGG 0.248432 3_4:-22301090 None:intergenic
CAGAAAGGAGTTTGTGCTTA+TGG 0.262469 3_4:+22300345 Msa0494410:CDS
GACAATGCTTGCATCCTTTC+CGG 0.265577 3_4:+22300733 Msa0494410:CDS
GCGTATCGTGTATTAGAAAT+TGG 0.271742 3_4:+22300928 Msa0494410:CDS
GGAATTTGTCAGGAGACTTT+TGG 0.272520 3_4:+22306889 Msa0494410:three_prime_UTR
AGAAGAGCCAAAACAGTAAA+TGG 0.273631 3_4:-22305943 None:intergenic
ATTGTTGATCCCAAGATTCT+TGG 0.278238 3_4:-22306842 None:intergenic
TCTTGATTGAGAAAACAAAA+AGG 0.290311 3_4:-22298999 None:intergenic
AAGAAAGAAAGATTGGAAAT+TGG 0.291707 3_4:-22298842 None:intergenic
AACTACAGTGTACACCATTT+TGG 0.303484 3_4:+22306658 Msa0494410:three_prime_UTR
ATTGTATCACCAACATTATT+CGG 0.326526 3_4:-22300218 None:intergenic
AGGTAGCTTTGCGTCATCTT+GGG 0.329256 3_4:+22302395 Msa0494410:CDS
TTGTCGTTCCAAGTGTTATT+TGG 0.331364 3_4:+22301030 Msa0494410:CDS
AAGCACTTTGAGGAGGTTTA+GGG 0.335451 3_4:+22299021 Msa0494410:five_prime_UTR
CGTAGTAGTAACCCAACATT+AGG 0.336048 3_4:+22300951 Msa0494410:CDS
TTGTGCAGATTCTTGATTCC+AGG 0.338822 3_4:-22300562 None:intergenic
GAGGTAGCTTTGCGTCATCT+TGG 0.340448 3_4:+22302394 Msa0494410:CDS
TTTATATGAATTTAAAATAT+GGG 0.355203 3_4:+22306926 Msa0494410:three_prime_UTR
TAAAAGTGCAAATTGTAAAA+TGG 0.356358 3_4:+22306537 Msa0494410:CDS
AATATGTGTAAAAGTTAATT+AGG 0.361095 3_4:+22306737 Msa0494410:three_prime_UTR
ATTTGTTCATTTGCTGCTGC+TGG 0.363377 3_4:+22300648 Msa0494410:CDS
ATTTAAGCATCTTAATGAAA+TGG 0.363388 3_4:+22306949 Msa0494410:three_prime_UTR
CTCTCCCCATATGACCAAAA+TGG 0.365915 3_4:-22306672 None:intergenic
ATTTCCATCTACTTCTGCTT+TGG 0.367658 3_4:-22303331 None:intergenic
TGACATTGCACCAAGAATCT+TGG 0.377266 3_4:+22306832 Msa0494410:three_prime_UTR
CTTTGTAAGTTCTTTGCTCA+TGG 0.382149 3_4:+22300143 Msa0494410:CDS
CCTTAAAGATATGCTATCAT+TGG 0.385829 3_4:-22305979 None:intergenic
ATATGTTCTTCTCTTTCTTC+AGG 0.386226 3_4:-22300756 None:intergenic
TTGATTCCAGGCTTGTTCAC+TGG 0.388041 3_4:-22300550 None:intergenic
AAAGAAATGGTTGTGAAGAT+AGG 0.395041 3_4:-22298901 None:intergenic
GCAAATTGTAAAATGGTAGA+TGG 0.396681 3_4:+22306544 Msa0494410:exon
GGCGAAGGAAACTGCCCTTT+CGG 0.397193 3_4:+22301734 Msa0494410:CDS
CTCAATCAAGAAGCACTTTG+AGG 0.402669 3_4:+22299011 Msa0494410:five_prime_UTR
TTTGAAGCATACAAAATGAA+TGG 0.408761 3_4:+22306616 Msa0494410:three_prime_UTR
AGAGAGAAACCTGATGTCTT+TGG 0.415002 3_4:-22302443 None:intergenic
TGATTCCAGGCTTGTTCACT+GGG 0.416070 3_4:-22300549 None:intergenic
CAATGATAGCATATCTTTAA+GGG 0.422202 3_4:+22305980 Msa0494410:CDS
TTCTTCCCAGTGAACAAGCC+TGG 0.423135 3_4:+22300544 Msa0494410:CDS
ATGAGGAAAGAAAGAAAGAT+TGG 0.426366 3_4:-22298849 None:intergenic
GTTTCAGAATCGGCTGTACT+TGG 0.435930 3_4:+22300453 Msa0494410:CDS
ACGGCAGCTGAGCGTAAGTT+TGG 0.437819 3_4:+22300876 Msa0494410:CDS
ATTATTTACAGGAATTTGTC+AGG 0.438068 3_4:+22306879 Msa0494410:three_prime_UTR
CTGCACAACTTGACTTCCTA+AGG 0.447330 3_4:+22300577 Msa0494410:CDS
GTGCTTATGGTAGTCGCTGC+AGG 0.448946 3_4:+22300358 Msa0494410:CDS
TTGTCCAAAGCAGAAGTAGA+TGG 0.449280 3_4:+22303327 Msa0494410:CDS
GACATTGCACCAAGAATCTT+GGG 0.449868 3_4:+22306833 Msa0494410:three_prime_UTR
CTCATGGAGCGTGTCTGAAA+GGG 0.457791 3_4:+22300159 Msa0494410:CDS
TGAAACAAGGGGCTGGTGTT+CGG 0.458109 3_4:-22300436 None:intergenic
TAACATCCATCCCTAATGTT+GGG 0.466091 3_4:-22300962 None:intergenic
CCAGCCCCTTGTTTCAGAAT+CGG 0.469602 3_4:+22300443 Msa0494410:CDS
CGTCATCTTGGGGCTGCAGA+TGG 0.471622 3_4:+22302406 Msa0494410:CDS
TGTTCGGTTATTGAAGAAGA+TGG 0.473750 3_4:-22300420 None:intergenic
GGAAGATGATGTTGTTCAAT+CGG 0.474976 3_4:+22300599 Msa0494410:CDS
CCATAATTGCCAAAGACATC+AGG 0.475198 3_4:+22302434 Msa0494410:CDS
AAAATGAATGGATTGATGAT+TGG 0.482043 3_4:+22306628 Msa0494410:three_prime_UTR
GCATATCTTTAAGGGAGATA+TGG 0.482595 3_4:+22305988 Msa0494410:CDS
ACTTTGATCCTAACGCCTCT+TGG 0.485589 3_4:+22299050 Msa0494410:five_prime_UTR
GAACAACATCATCTTCCCTT+AGG 0.486955 3_4:-22300593 None:intergenic
TTAACATCCATCCCTAATGT+TGG 0.488690 3_4:-22300963 None:intergenic
TAAGATAGCTTGCGACAGAT+AGG 0.489220 3_4:-22301005 None:intergenic
GCAGCAGCAAATGAACAAAT+CGG 0.492646 3_4:-22300645 None:intergenic
AATATTAACCAAGAGGCGTT+AGG 0.495686 3_4:-22299058 None:intergenic
TGAGACACAACACAGAGGTT+AGG 0.518491 3_4:-22298810 None:intergenic
GCTCATGGAGCGTGTCTGAA+AGG 0.521682 3_4:+22300158 Msa0494410:CDS
TCTCTTTCTTCAGGCCGGAA+AGG 0.522386 3_4:-22300747 None:intergenic
GCCAAAACAGTAAATGGAAA+GGG 0.524346 3_4:-22305937 None:intergenic
CTTAAAGATATGCTATCATT+GGG 0.524732 3_4:-22305978 None:intergenic
CAACACCATTCGATGTAACT+CGG 0.526387 3_4:-22300482 None:intergenic
GTTCTTCTCTTTCTTCAGGC+CGG 0.528004 3_4:-22300752 None:intergenic
TCTTTAAGGGAGATATGGTC+AGG 0.537896 3_4:+22305993 Msa0494410:CDS
GAACAAATCGGAAGCTCAGA+AGG 0.538088 3_4:-22300633 None:intergenic
GGTTGATGATGAGGAATTTG+AGG 0.541335 3_4:+22303263 Msa0494410:CDS
TACAGCCGATTCTGAAACAA+GGG 0.542302 3_4:-22300448 None:intergenic
GGAAATACATCACTTGATAA+CGG 0.546625 3_4:+22303348 Msa0494410:CDS
GATGAGGAATTTGAGGAGAA+TGG 0.547301 3_4:+22303270 Msa0494410:CDS
GTAGTAGTAACCCAACATTA+GGG 0.548465 3_4:+22300952 Msa0494410:CDS
GAACAATGTCCTCATGTACA+TGG 0.552108 3_4:+22300687 Msa0494410:CDS
GCGTGTTCTTTCAAAGCCTA+CGG 0.552472 3_4:+22300857 Msa0494410:CDS
ACACAACACAGAGGTTAGGT+TGG 0.556767 3_4:-22298806 None:intergenic
GGTAGCTTTGCGTCATCTTG+GGG 0.557694 3_4:+22302396 Msa0494410:CDS
AAAAGTTAATTAGGTCAATG+AGG 0.559312 3_4:+22306746 Msa0494410:three_prime_UTR
TGTTCACTGGGAAGAACAAA+GGG 0.561359 3_4:-22300537 None:intergenic
CCGATTCTGAAACAAGGGGC+TGG 0.563910 3_4:-22300443 None:intergenic
ATGATAGGTGGTTGATGATG+AGG 0.573836 3_4:+22303254 Msa0494410:intron
GGATGTTAATAGCACACTGC+GGG 0.575503 3_4:+22300977 Msa0494410:CDS
TATCACCAACATTATTCGGA+GGG 0.577334 3_4:-22300214 None:intergenic
AGCCAAAACAGTAAATGGAA+AGG 0.580196 3_4:-22305938 None:intergenic
ATATCGTGATGGCCGTCTTG+AGG 0.591471 3_4:+22302372 Msa0494410:CDS
AGAAGCAGCTGGTACCGAAA+GGG 0.591507 3_4:-22301748 None:intergenic
CAAGCATTGTCTTCCACATG+AGG 0.592492 3_4:-22300721 None:intergenic
TTGTTCACTGGGAAGAACAA+AGG 0.593124 3_4:-22300538 None:intergenic
ATCACCAACATTATTCGGAG+GGG 0.593920 3_4:-22300213 None:intergenic
TAGTAACCCAACATTAGGGA+TGG 0.597655 3_4:+22300956 Msa0494410:CDS
AATACCCGAGTTACATCGAA+TGG 0.599856 3_4:+22300477 Msa0494410:CDS
GGAAATTTATGCCCCTCATG+TGG 0.606014 3_4:+22300708 Msa0494410:CDS
TATTGAAGAAGATGGAGTAG+AGG 0.608961 3_4:-22300412 None:intergenic
AATCAAGAAGCACTTTGAGG+AGG 0.609077 3_4:+22299014 Msa0494410:five_prime_UTR
CATAAATTTCCATGTACATG+AGG 0.611850 3_4:-22300696 None:intergenic
GTAGCATACCAAATAACACT+TGG 0.613633 3_4:-22301038 None:intergenic
AAGCATTGTCTTCCACATGA+GGG 0.614385 3_4:-22300720 None:intergenic
TCGTGATGGCCGTCTTGAGG+AGG 0.617371 3_4:+22302375 Msa0494410:CDS
AACACCATTCGATGTAACTC+GGG 0.620122 3_4:-22300481 None:intergenic
TAATAATAATATTAACCAAG+AGG 0.624849 3_4:-22299065 None:intergenic
AGCATTGTCTTCCACATGAG+GGG 0.631001 3_4:-22300719 None:intergenic
GGAAATCATTGATACCTACA+AGG 0.631452 3_4:+22301076 Msa0494410:CDS
ATAATTTCGCCATGTCAAAG+AGG 0.631521 3_4:+22299096 Msa0494410:exon
AACTTACGCTCAGCTGCCGT+AGG 0.632534 3_4:-22300873 None:intergenic
TGCACAACTTGACTTCCTAA+GGG 0.633433 3_4:+22300578 Msa0494410:CDS
GTATCACCAACATTATTCGG+AGG 0.636921 3_4:-22300215 None:intergenic
TGAGGACATTGTTCCCCTCG+TGG 0.637218 3_4:-22300678 None:intergenic
GTACAGCCGATTCTGAAACA+AGG 0.638170 3_4:-22300449 None:intergenic
CTGCTGGAAACTGTCCACGA+GGG 0.638932 3_4:+22300664 Msa0494410:CDS
TGCTGGAAACTGTCCACGAG+GGG 0.639094 3_4:+22300665 Msa0494410:CDS
CTAATACACGATACGCAGAA+CGG 0.640856 3_4:-22300921 None:intergenic
TCATGGAGCGTGTCTGAAAG+GGG 0.647946 3_4:+22300160 Msa0494410:CDS
TCTATCTTACCTCTTTGACA+TGG 0.648394 3_4:-22299105 None:intergenic
TTGCAGCATGCATATCGTGA+TGG 0.670081 3_4:+22302361 Msa0494410:intron
AAATAAGCAAAAGCATCTCG+AGG 0.674626 3_4:+22300791 Msa0494410:CDS
ATGGAAAGGGCATTGCACAA+AGG 0.675107 3_4:-22305924 None:intergenic
GCTGCTGGAAACTGTCCACG+AGG 0.694625 3_4:+22300663 Msa0494410:CDS
GCTTTGAAAGAACACGCTCG+AGG 0.700611 3_4:-22300851 None:intergenic
ACAGCCGATTCTGAAACAAG+GGG 0.720447 3_4:-22300447 None:intergenic
GCAAAGCTACCTCCTCAAGA+CGG 0.724386 3_4:-22302384 None:intergenic
TTGAATGAGACACAACACAG+AGG 0.766563 3_4:-22298815 None:intergenic
TGGATGTTAATAGCACACTG+CGG 0.772501 3_4:+22300976 Msa0494410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAATATTATTATG+AGG - chr3_4:22298869-22298888 None:intergenic 10.0%
!! CTATAATAAAAATAAAATTG+AGG - chr3_4:22298978-22298997 None:intergenic 10.0%
!!! TTCTTGATTATTTTTTTATA+TGG + chr3_4:22299168-22299187 Msa0494410:intron 10.0%
!!! TCTTGATTATTTTTTTATAT+GGG + chr3_4:22299169-22299188 Msa0494410:intron 10.0%
!!! TAAAAAAGTATTTATTTTGT+TGG - chr3_4:22304565-22304584 None:intergenic 10.0%
!!! GTTTATATGAATTTAAAATA+TGG + chr3_4:22306925-22306944 Msa0494410:three_prime_UTR 10.0%
!! TAATAATAATATTAACCAAG+AGG - chr3_4:22299068-22299087 None:intergenic 15.0%
!!! CTTGATTATTTTTTTATATG+GGG + chr3_4:22299170-22299189 Msa0494410:intron 15.0%
!!! TAGATTTTTTTTTGGATTAT+TGG + chr3_4:22299331-22299350 Msa0494410:intron 15.0%
!! TTTATGTAATTAATTGTCTT+TGG + chr3_4:22300106-22300125 Msa0494410:intron 15.0%
!!! AATAAACTAAAAACAACTTT+TGG + chr3_4:22301527-22301546 Msa0494410:intron 15.0%
!!! TGCAAATTTTAAATATACTT+GGG - chr3_4:22302213-22302232 None:intergenic 15.0%
!!! TTGCAAATTTTAAATATACT+TGG - chr3_4:22302214-22302233 None:intergenic 15.0%
!! AAGTATAACATAAACTAATT+AGG - chr3_4:22302339-22302358 None:intergenic 15.0%
!! AAAGTTAAACTTAAATTGAT+AGG - chr3_4:22303499-22303518 None:intergenic 15.0%
!! TCAAAAAATAAAAGACTATT+TGG - chr3_4:22304635-22304654 None:intergenic 15.0%
!! AAATTAAAAAAAGACAACTA+TGG - chr3_4:22304732-22304751 None:intergenic 15.0%
!! AATATCAAAATATTAATGTC+TGG - chr3_4:22305552-22305571 None:intergenic 15.0%
!! AGTAATTAAGAAAATTGAAA+AGG + chr3_4:22306326-22306345 Msa0494410:intron 15.0%
!! AATATGTGTAAAAGTTAATT+AGG + chr3_4:22306737-22306756 Msa0494410:three_prime_UTR 15.0%
!!! TGAATTTTGTTATTATTTAC+AGG + chr3_4:22306868-22306887 Msa0494410:three_prime_UTR 15.0%
!! AAAAGCAAAAGAAAAAGAAA+TGG - chr3_4:22298917-22298936 None:intergenic 20.0%
!!! TTTTTTTTTCTTCAATCATG+TGG + chr3_4:22299250-22299269 Msa0494410:intron 20.0%
!! TTGATTATAACTCAGAAATT+AGG + chr3_4:22299291-22299310 Msa0494410:intron 20.0%
!!! ATGCAAAGTAGATTTTTTTT+TGG + chr3_4:22299323-22299342 Msa0494410:intron 20.0%
!!! AGTTTTTTTTTTTGCAAGTT+CGG + chr3_4:22299549-22299568 Msa0494410:intron 20.0%
!! AAGTTCGGTAAATAATTATT+CGG + chr3_4:22299564-22299583 Msa0494410:intron 20.0%
!!! TTATAGCTTTTGAATTTTCA+CGG + chr3_4:22299780-22299799 Msa0494410:intron 20.0%
!!! AAAAGTCTCTAGAATAAAAA+GGG - chr3_4:22299918-22299937 None:intergenic 20.0%
!!! AAAAAGTCTCTAGAATAAAA+AGG - chr3_4:22299919-22299938 None:intergenic 20.0%
!!! TTTATTCTAGAGACTTTTTA+AGG + chr3_4:22299920-22299939 Msa0494410:intron 20.0%
!! ATAACTCAATAACCATAAAT+CGG - chr3_4:22300266-22300285 None:intergenic 20.0%
!! ATATTAGATCATGAATCAAT+TGG - chr3_4:22301166-22301185 None:intergenic 20.0%
!!! ACTATTATGTTGCTTATATT+AGG - chr3_4:22301334-22301353 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr3_4:22301368-22301387 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr3_4:22301369-22301388 None:intergenic 20.0%
!! TTATATCTGAGTTTATATAC+TGG - chr3_4:22301608-22301627 None:intergenic 20.0%
!!! TTTTGCTGAAATGTTTATTT+TGG + chr3_4:22301660-22301679 Msa0494410:intron 20.0%
!! TTTGGAAAGAAAAGTAAAAT+GGG - chr3_4:22301830-22301849 None:intergenic 20.0%
!!! TTTTGGAAAGAAAAGTAAAA+TGG - chr3_4:22301831-22301850 None:intergenic 20.0%
!!! AAACAATTGAAATTTGTTCA+CGG - chr3_4:22301950-22301969 None:intergenic 20.0%
!! AAACATCATAATTAAACGTT+AGG - chr3_4:22302259-22302278 None:intergenic 20.0%
!!! TTCATGATTTCTTTTGTATA+TGG + chr3_4:22302627-22302646 Msa0494410:intron 20.0%
!!! TTTTTTTTTTTTTCCTTGAG+CGG - chr3_4:22302911-22302930 None:intergenic 20.0%
!! TTAAGCAACTTAAATTCTTA+TGG - chr3_4:22302945-22302964 None:intergenic 20.0%
!!! AGAATTTAAGTTGCTTAATT+TGG + chr3_4:22302947-22302966 Msa0494410:intron 20.0%
!! CAATGTAATTGAATGAAATA+GGG - chr3_4:22303030-22303049 None:intergenic 20.0%
!! TCAATGTAATTGAATGAAAT+AGG - chr3_4:22303031-22303050 None:intergenic 20.0%
!!! CAATGAAGTTGATTATTTTT+CGG + chr3_4:22303371-22303390 Msa0494410:CDS 20.0%
!!! GTTTAACTTTCTTGATTTTT+TGG + chr3_4:22303509-22303528 Msa0494410:intron 20.0%
!!! ACAGTCAACTAATATTTTTT+TGG - chr3_4:22303680-22303699 None:intergenic 20.0%
!! TTAGACATTATGGAATAAAT+GGG + chr3_4:22303898-22303917 Msa0494410:intron 20.0%
!! AAAAATAAAAGACTATTTGG+AGG - chr3_4:22304632-22304651 None:intergenic 20.0%
!! ATGATTTCTCAAAATGTAAT+TGG - chr3_4:22305215-22305234 None:intergenic 20.0%
!! TATCTACAAATAACTGTAAT+CGG - chr3_4:22305739-22305758 None:intergenic 20.0%
!!! TTTTGTTTAATCAGTTTCAA+AGG + chr3_4:22306475-22306494 Msa0494410:intron 20.0%
!!! TAAAAGTGCAAATTGTAAAA+TGG + chr3_4:22306537-22306556 Msa0494410:CDS 20.0%
!!! ATATATATGCTTTTGTACAA+TGG + chr3_4:22306569-22306588 Msa0494410:three_prime_UTR 20.0%
!!! ATTTTGTATGCTTCAAAAAT+TGG - chr3_4:22306613-22306632 None:intergenic 20.0%
!!! ACATTTACTTTTATGTATTG+TGG + chr3_4:22306706-22306725 Msa0494410:three_prime_UTR 20.0%
!!! GTAAACTTAATTTTTATGCT+TGG + chr3_4:22306809-22306828 Msa0494410:three_prime_UTR 20.0%
!! ATTTAAGCATCTTAATGAAA+TGG + chr3_4:22306949-22306968 Msa0494410:three_prime_UTR 20.0%
! AAGAAAGAAAGATTGGAAAT+TGG - chr3_4:22298845-22298864 None:intergenic 25.0%
!!! AAAAAAAACCTCACGTTTTT+TGG + chr3_4:22298949-22298968 Msa0494410:five_prime_UTR 25.0%
! CTTGATTGAGAAAACAAAAA+GGG - chr3_4:22299001-22299020 None:intergenic 25.0%
! TCTTGATTGAGAAAACAAAA+AGG - chr3_4:22299002-22299021 None:intergenic 25.0%
!!! ATTGGATAAGTTTTTGAAGT+TGG + chr3_4:22299349-22299368 Msa0494410:intron 25.0%
!! TTTGAAGTTGGAATTCTATT+AGG + chr3_4:22299361-22299380 Msa0494410:intron 25.0%
! AATTTGATATTTCTCCTATC+TGG + chr3_4:22299474-22299493 Msa0494410:intron 25.0%
! ATTTGATATTTCTCCTATCT+GGG + chr3_4:22299475-22299494 Msa0494410:intron 25.0%
!!! TTTCTTTTTGATTGGAATTC+AGG + chr3_4:22299499-22299518 Msa0494410:intron 25.0%
! ATGATATAGCTTATTGAAGT+AGG + chr3_4:22299590-22299609 Msa0494410:intron 25.0%
! TATGCATATGTTTATTTGAG+CGG + chr3_4:22299707-22299726 Msa0494410:intron 25.0%
! AATTCAAAAGCTATAAAGAG+TGG - chr3_4:22299776-22299795 None:intergenic 25.0%
!!! AAAGTCTCTAGAATAAAAAG+GGG - chr3_4:22299917-22299936 None:intergenic 25.0%
! GCATGATTAAAATGAATTCA+TGG - chr3_4:22299983-22300002 None:intergenic 25.0%
! ATTGTATCACCAACATTATT+CGG - chr3_4:22300221-22300240 None:intergenic 25.0%
!! ATATGCACATTTTATCAGAA+AGG + chr3_4:22300330-22300349 Msa0494410:CDS 25.0%
!! ACATAAAACTATCTAAGGTT+TGG - chr3_4:22301192-22301211 None:intergenic 25.0%
! ATGCTGAATAAGTTGTTATA+AGG + chr3_4:22301227-22301246 Msa0494410:intron 25.0%
! TGCTGAATAAGTTGTTATAA+GGG + chr3_4:22301228-22301247 Msa0494410:intron 25.0%
!! AGTGTTTTCATAAGTTATCT+TGG + chr3_4:22301492-22301511 Msa0494410:intron 25.0%
! ATTTGTTCAATACCATTTGT+AGG + chr3_4:22301684-22301703 Msa0494410:intron 25.0%
!! CTATACGATAAGTAAAGTTT+TGG - chr3_4:22301848-22301867 None:intergenic 25.0%
!! AATGTCATAAAGCATCAATT+GGG - chr3_4:22301881-22301900 None:intergenic 25.0%
!! TAATGTCATAAAGCATCAAT+TGG - chr3_4:22301882-22301901 None:intergenic 25.0%
! TCATAATTAAACGTTAGGTA+GGG - chr3_4:22302254-22302273 None:intergenic 25.0%
! ATCATAATTAAACGTTAGGT+AGG - chr3_4:22302255-22302274 None:intergenic 25.0%
! ATGTATTAAGTTAGCGAAAT+TGG - chr3_4:22302501-22302520 None:intergenic 25.0%
!! TTTCCCTAGTATATTGTTTT+AGG - chr3_4:22303152-22303171 None:intergenic 25.0%
! ACAATATACTAGGGAAATAA+AGG + chr3_4:22303155-22303174 Msa0494410:intron 25.0%
! ACTGTATTTATGTGCTATAT+TGG + chr3_4:22303561-22303580 Msa0494410:intron 25.0%
! TATAGATAATCTTAGTGTCT+TGG + chr3_4:22303776-22303795 Msa0494410:intron 25.0%
! GTTAGACATTATGGAATAAA+TGG + chr3_4:22303897-22303916 Msa0494410:intron 25.0%
!! TCATTTTCAGCAATCTTTTA+TGG + chr3_4:22304176-22304195 Msa0494410:intron 25.0%
! AGTTTGGAAGTGAAATAATT+AGG - chr3_4:22304528-22304547 None:intergenic 25.0%
!!! ACAATTTTTTGATTCCCAAA+TGG + chr3_4:22304654-22304673 Msa0494410:intron 25.0%
! CAGAATACTTGCATAAAAAA+TGG + chr3_4:22304803-22304822 Msa0494410:intron 25.0%
! ACTTACCATAAAAATTGAAG+AGG - chr3_4:22304873-22304892 None:intergenic 25.0%
! ATATTCCAACAAAAAAGCTT+CGG - chr3_4:22304926-22304945 None:intergenic 25.0%
!!! TGTTGGAATATTAGTTTTGT+TGG + chr3_4:22304935-22304954 Msa0494410:intron 25.0%
! AGATTGTTTGTACTTTGTAA+TGG + chr3_4:22305283-22305302 Msa0494410:intron 25.0%
!! TACTTTGTAATGGAAAGATT+TGG + chr3_4:22305293-22305312 Msa0494410:intron 25.0%
!! ACTTTGTAATGGAAAGATTT+GGG + chr3_4:22305294-22305313 Msa0494410:intron 25.0%
! ATCTACAAATAACTGTAATC+GGG - chr3_4:22305738-22305757 None:intergenic 25.0%
! CTTAAAGATATGCTATCATT+GGG - chr3_4:22305981-22306000 None:intergenic 25.0%
! CAATGATAGCATATCTTTAA+GGG + chr3_4:22305980-22305999 Msa0494410:CDS 25.0%
! AATACACCAATACATATCAA+GGG - chr3_4:22306224-22306243 None:intergenic 25.0%
! AAATACACCAATACATATCA+AGG - chr3_4:22306225-22306244 None:intergenic 25.0%
! ATGCAAGCAATATTAATTAG+AGG + chr3_4:22306289-22306308 Msa0494410:intron 25.0%
!! TTTGCACTTTTATTACATGA+TGG - chr3_4:22306529-22306548 None:intergenic 25.0%
!! TTTGAAGCATACAAAATGAA+TGG + chr3_4:22306616-22306635 Msa0494410:three_prime_UTR 25.0%
!!! AAAATGAATGGATTGATGAT+TGG + chr3_4:22306628-22306647 Msa0494410:three_prime_UTR 25.0%
! AAAAGTTAATTAGGTCAATG+AGG + chr3_4:22306746-22306765 Msa0494410:three_prime_UTR 25.0%
! ATTATTTACAGGAATTTGTC+AGG + chr3_4:22306879-22306898 Msa0494410:three_prime_UTR 25.0%
ATGAGGAAAGAAAGAAAGAT+TGG - chr3_4:22298852-22298871 None:intergenic 30.0%
AAAGAAATGGTTGTGAAGAT+AGG - chr3_4:22298904-22298923 None:intergenic 30.0%
ATCAAAAAGAAAACCCAGAT+AGG - chr3_4:22299491-22299510 None:intergenic 30.0%
! ATCTGGGTTTTCTTTTTGAT+TGG + chr3_4:22299491-22299510 Msa0494410:intron 30.0%
TTGATTGGAATTCAGGAATT+AGG + chr3_4:22299506-22299525 Msa0494410:intron 30.0%
ATCGACATTAATCCTTATCA+CGG - chr3_4:22299946-22299965 None:intergenic 30.0%
! CATGGTTAGAAGGTTTTTAA+CGG + chr3_4:22300025-22300044 Msa0494410:intron 30.0%
!! AATTGTCTTTGGAATCTTTC+AGG + chr3_4:22300117-22300136 Msa0494410:intron 30.0%
!! ATTGTCTTTGGAATCTTTCA+GGG + chr3_4:22300118-22300137 Msa0494410:intron 30.0%
TGATACAATCTCTTCTATGT+TGG + chr3_4:22300232-22300251 Msa0494410:intron 30.0%
CATAAATTTCCATGTACATG+AGG - chr3_4:22300699-22300718 None:intergenic 30.0%
ATATGTTCTTCTCTTTCTTC+AGG - chr3_4:22300759-22300778 None:intergenic 30.0%
TGCTACAAGTGAAGAAAAAA+TGG + chr3_4:22301055-22301074 Msa0494410:CDS 30.0%
AAGACATAAATAGATGCTGT+GGG - chr3_4:22301127-22301146 None:intergenic 30.0%
CACAGACATAAAACTATCTA+AGG - chr3_4:22301197-22301216 None:intergenic 30.0%
ACAACTTATTCAGCATAGTA+TGG - chr3_4:22301223-22301242 None:intergenic 30.0%
GCTGAATAAGTTGTTATAAG+GGG + chr3_4:22301229-22301248 Msa0494410:intron 30.0%
AAAGTAAAATGGGTCAAACA+GGG - chr3_4:22301820-22301839 None:intergenic 30.0%
AAAAGTAAAATGGGTCAAAC+AGG - chr3_4:22301821-22301840 None:intergenic 30.0%
CTTTGGTCTCTATATGAAAA+AGG - chr3_4:22301911-22301930 None:intergenic 30.0%
GCAAACTGAATTTAGTACTT+TGG - chr3_4:22301928-22301947 None:intergenic 30.0%
TAATGACTGCAACTTATTTC+TGG + chr3_4:22301994-22302013 Msa0494410:intron 30.0%
TGCAAATTGTTGTCAAATAG+AGG + chr3_4:22302097-22302116 Msa0494410:intron 30.0%
CATAATTAAACGTTAGGTAG+GGG - chr3_4:22302253-22302272 None:intergenic 30.0%
AAGTTAGCGAAATTGGAAAA+AGG - chr3_4:22302494-22302513 None:intergenic 30.0%
AACTTAAATGCATGTTAGCA+AGG - chr3_4:22302547-22302566 None:intergenic 30.0%
!! CTAACATGCATTTAAGTTGA+AGG + chr3_4:22302549-22302568 Msa0494410:intron 30.0%
TGTGATGTAAGTTTCAAACT+TGG + chr3_4:22302587-22302606 Msa0494410:intron 30.0%
GTGATGTAAGTTTCAAACTT+GGG + chr3_4:22302588-22302607 Msa0494410:intron 30.0%
!! TTATTTCTCCACTTTTCAAG+TGG + chr3_4:22302755-22302774 Msa0494410:intron 30.0%
!! ATGAGTCGATTTTTATGATG+AGG + chr3_4:22303103-22303122 Msa0494410:intron 30.0%
AGAGCCTAAAACAATATACT+AGG + chr3_4:22303145-22303164 Msa0494410:intron 30.0%
GAGCCTAAAACAATATACTA+GGG + chr3_4:22303146-22303165 Msa0494410:intron 30.0%
AGAGTTGTAACACTACTTTA+TGG - chr3_4:22303183-22303202 None:intergenic 30.0%
TATACAACTTCACCCTAAAA+AGG + chr3_4:22303228-22303247 Msa0494410:intron 30.0%
ATACAACTTCACCCTAAAAA+GGG + chr3_4:22303229-22303248 Msa0494410:intron 30.0%
! ACCTATCATTTCCCTTTTTA+GGG - chr3_4:22303243-22303262 None:intergenic 30.0%
! TGAAAAATCCATAGAAGTGT+TGG + chr3_4:22303293-22303312 Msa0494410:CDS 30.0%
AACATTAACCAACACTTCTA+TGG - chr3_4:22303304-22303323 None:intergenic 30.0%
GGAAATACATCACTTGATAA+CGG + chr3_4:22303348-22303367 Msa0494410:CDS 30.0%
!! TATTTTTCGGTTGAAGAAGA+TGG + chr3_4:22303384-22303403 Msa0494410:CDS 30.0%
GTATTTATGTGCTATATTGG+AGG + chr3_4:22303564-22303583 Msa0494410:intron 30.0%
TAACAGGGTTATATCAAGTT+GGG - chr3_4:22303817-22303836 None:intergenic 30.0%
AGATCATATGATCAGATAAC+GGG - chr3_4:22303858-22303877 None:intergenic 30.0%
GAGATCATATGATCAGATAA+CGG - chr3_4:22303859-22303878 None:intergenic 30.0%
TCTCTTACATCAAGTTCTTA+TGG + chr3_4:22303875-22303894 Msa0494410:intron 30.0%
GTTCTTATGGTTAGACATTA+TGG + chr3_4:22303888-22303907 Msa0494410:intron 30.0%
TTACATTATGCCTTAGAATC+TGG + chr3_4:22303921-22303940 Msa0494410:intron 30.0%
TACATTATGCCTTAGAATCT+GGG + chr3_4:22303922-22303941 Msa0494410:intron 30.0%
GTGTAGTGCATATAAAGTTA+GGG - chr3_4:22303977-22303996 None:intergenic 30.0%
AGTGTAGTGCATATAAAGTT+AGG - chr3_4:22303978-22303997 None:intergenic 30.0%
TAACTTTATATGCACTACAC+TGG + chr3_4:22303977-22303996 Msa0494410:intron 30.0%
CTAGTATGATATTGGACATT+CGG + chr3_4:22304119-22304138 Msa0494410:intron 30.0%
CAACATTCTTCATCTCATAA+AGG - chr3_4:22304202-22304221 None:intergenic 30.0%
CTTTATGAGATGAAGAATGT+TGG + chr3_4:22304200-22304219 Msa0494410:intron 30.0%
TTGTCAAATAATGGCTATAG+TGG - chr3_4:22304353-22304372 None:intergenic 30.0%
!! AACGAAGTGTTGTCAAATAA+TGG - chr3_4:22304362-22304381 None:intergenic 30.0%
ACAACACTAGGTTTAACATT+AGG + chr3_4:22304477-22304496 Msa0494410:intron 30.0%
CAACACTAGGTTTAACATTA+GGG + chr3_4:22304478-22304497 Msa0494410:intron 30.0%
! AAGCTCCTCTTCAATTTTTA+TGG + chr3_4:22304865-22304884 Msa0494410:intron 30.0%
AGAACATTGTGTAAAATGAG+TGG - chr3_4:22304999-22305018 None:intergenic 30.0%
CGATTATGTTTCAGAAAGTT+AGG + chr3_4:22305049-22305068 Msa0494410:intron 30.0%
GTACAAACAATCTTAAACCT+TGG - chr3_4:22305276-22305295 None:intergenic 30.0%
AATGGAAAGATTTGGGTAAA+AGG + chr3_4:22305301-22305320 Msa0494410:intron 30.0%
! AACCTTAGGTTTGATTTAGA+AGG + chr3_4:22305403-22305422 Msa0494410:intron 30.0%
TTCCTTCAGTGAAAAAACTA+GGG - chr3_4:22305497-22305516 None:intergenic 30.0%
ATCACCATAGAGAAGAAATT+TGG + chr3_4:22305592-22305611 Msa0494410:intron 30.0%
TCACCATAGAGAAGAAATTT+GGG + chr3_4:22305593-22305612 Msa0494410:intron 30.0%
TTTCCCAAATTTCTTCTCTA+TGG - chr3_4:22305599-22305618 None:intergenic 30.0%
AGTAAGAAAACTGTTTGCAA+GGG + chr3_4:22305642-22305661 Msa0494410:intron 30.0%
AGAGAATAATCTGTACACAA+TGG - chr3_4:22305903-22305922 None:intergenic 30.0%
CCTTAAAGATATGCTATCAT+TGG - chr3_4:22305982-22306001 None:intergenic 30.0%
CCAATGATAGCATATCTTTA+AGG + chr3_4:22305979-22305998 Msa0494410:CDS 30.0%
GTCATTATACACATAGCAAA+AGG + chr3_4:22306072-22306091 Msa0494410:intron 30.0%
! CCAGATAGGTCAATTATTTT+CGG - chr3_4:22306138-22306157 None:intergenic 30.0%
ATAGTACCCTTGATATGTAT+TGG + chr3_4:22306215-22306234 Msa0494410:intron 30.0%
AAATGCATAGTAGAATATGC+TGG + chr3_4:22306256-22306275 Msa0494410:intron 30.0%
ATAGTAGAATATGCTGGATT+GGG + chr3_4:22306262-22306281 Msa0494410:intron 30.0%
GAAAATTGAAAAGGTCAAGA+CGG + chr3_4:22306335-22306354 Msa0494410:intron 30.0%
GCAAATTGTAAAATGGTAGA+TGG + chr3_4:22306544-22306563 Msa0494410:exon 30.0%
CTTCAAAAATTGGAGCTTAT+TGG - chr3_4:22306603-22306622 None:intergenic 30.0%
!! AATATTAACCAAGAGGCGTT+AGG - chr3_4:22299061-22299080 None:intergenic 35.0%
CTTTGACATGGCGAAATTAT+TGG - chr3_4:22299096-22299115 None:intergenic 35.0%
ATAATTTCGCCATGTCAAAG+AGG + chr3_4:22299096-22299115 Msa0494410:exon 35.0%
TCTATCTTACCTCTTTGACA+TGG - chr3_4:22299108-22299127 None:intergenic 35.0%
ATTGAAGTAGGAACACAATC+AGG + chr3_4:22299602-22299621 Msa0494410:intron 35.0%
ATCTTGGAAATATCTCTCCT+CGG + chr3_4:22299675-22299694 Msa0494410:intron 35.0%
! ATGCTTTGTGTTTTCGTTTG+CGG + chr3_4:22299999-22300018 Msa0494410:intron 35.0%
CTTTGTAAGTTCTTTGCTCA+TGG + chr3_4:22300143-22300162 Msa0494410:CDS 35.0%
! ATTGTGAGTTTTCTCATGAC+TGG + chr3_4:22300186-22300205 Msa0494410:CDS 35.0%
TATCACCAACATTATTCGGA+GGG - chr3_4:22300217-22300236 None:intergenic 35.0%
!! TTGGACATTTCACCGATTTA+TGG + chr3_4:22300251-22300270 Msa0494410:intron 35.0%
TATTGAAGAAGATGGAGTAG+AGG - chr3_4:22300415-22300434 None:intergenic 35.0%
TGTTCGGTTATTGAAGAAGA+TGG - chr3_4:22300423-22300442 None:intergenic 35.0%
GGAAGATGATGTTGTTCAAT+CGG + chr3_4:22300599-22300618 Msa0494410:CDS 35.0%
!! AAATAAGCAAAAGCATCTCG+AGG + chr3_4:22300791-22300810 Msa0494410:CDS 35.0%
GCGTATCGTGTATTAGAAAT+TGG + chr3_4:22300928-22300947 Msa0494410:CDS 35.0%
GTAGTAGTAACCCAACATTA+GGG + chr3_4:22300952-22300971 Msa0494410:CDS 35.0%
TAACATCCATCCCTAATGTT+GGG - chr3_4:22300965-22300984 None:intergenic 35.0%
TTAACATCCATCCCTAATGT+TGG - chr3_4:22300966-22300985 None:intergenic 35.0%
! TTGTCGTTCCAAGTGTTATT+TGG + chr3_4:22301030-22301049 Msa0494410:CDS 35.0%
GTAGCATACCAAATAACACT+TGG - chr3_4:22301041-22301060 None:intergenic 35.0%
GGAAATCATTGATACCTACA+AGG + chr3_4:22301076-22301095 Msa0494410:CDS 35.0%
GAAGACATAAATAGATGCTG+TGG - chr3_4:22301128-22301147 None:intergenic 35.0%
!! TAGCATTGATATGCATGTGT+AGG + chr3_4:22301269-22301288 Msa0494410:intron 35.0%
!! AGCATTGATATGCATGTGTA+GGG + chr3_4:22301270-22301289 Msa0494410:intron 35.0%
GCAAAAAGCTAGACACATTA+GGG - chr3_4:22301646-22301665 None:intergenic 35.0%
AGCAAAAAGCTAGACACATT+AGG - chr3_4:22301647-22301666 None:intergenic 35.0%
GCAATCAATTGACCTACAAA+TGG - chr3_4:22301699-22301718 None:intergenic 35.0%
!!! GATTGCAAGCATTTTGACTT+TGG + chr3_4:22301713-22301732 Msa0494410:intron 35.0%
GGTATAGCACTATAGTGTAA+GGG + chr3_4:22302137-22302156 Msa0494410:intron 35.0%
GGTACTAGTATTATCAATCG+CGG - chr3_4:22302192-22302211 None:intergenic 35.0%
! TAGGCTCTAGTTGTTCTTTA+AGG - chr3_4:22302320-22302339 None:intergenic 35.0%
TAAAGATGAGAACCAGGATA+AGG - chr3_4:22302470-22302489 None:intergenic 35.0%
AAAGGATAAAGATGAGAACC+AGG - chr3_4:22302476-22302495 None:intergenic 35.0%
ACTTAATACATGATGCCATC+AGG + chr3_4:22302510-22302529 Msa0494410:intron 35.0%
!! CATGCATTTAAGTTGAAGGT+CGG + chr3_4:22302553-22302572 Msa0494410:intron 35.0%
TTGTATCCAATGCTTCAACA+TGG + chr3_4:22302673-22302692 Msa0494410:intron 35.0%
! TATCTATGCCACTTGAAAAG+TGG - chr3_4:22302766-22302785 None:intergenic 35.0%
GCATAGATAAATTGCACCTT+GGG + chr3_4:22302777-22302796 Msa0494410:intron 35.0%
! TACAACTAAGCTATTTCCCA+AGG - chr3_4:22302796-22302815 None:intergenic 35.0%
TTGGGAAATAGCTTAGTTGT+AGG + chr3_4:22302795-22302814 Msa0494410:intron 35.0%
!!! TTTTTTTTCCTTGAGCGGTA+TGG - chr3_4:22302906-22302925 None:intergenic 35.0%
ACATTGATGAGTGCAACAAA+TGG + chr3_4:22303044-22303063 Msa0494410:intron 35.0%
ATGATGAGGACACACTAAAT+TGG + chr3_4:22303117-22303136 Msa0494410:intron 35.0%
TGATGAGGACACACTAAATT+GGG + chr3_4:22303118-22303137 Msa0494410:intron 35.0%
ACCCTAAAAAGGGAAATGAT+AGG + chr3_4:22303239-22303258 Msa0494410:intron 35.0%
! CACCTATCATTTCCCTTTTT+AGG - chr3_4:22303244-22303263 None:intergenic 35.0%
CTAAAAAGGGAAATGATAGG+TGG + chr3_4:22303242-22303261 Msa0494410:intron 35.0%
ATTTCCATCTACTTCTGCTT+TGG - chr3_4:22303334-22303353 None:intergenic 35.0%
!! CGTCATTTTCATCAAGTTCA+AGG - chr3_4:22303428-22303447 None:intergenic 35.0%
CAAGTGTTCTCAATGATAGA+TGG - chr3_4:22303605-22303624 None:intergenic 35.0%
ACTTGTTCGTAGCAAGAATA+AGG + chr3_4:22303620-22303639 Msa0494410:intron 35.0%
! AAGTTGGGGTATCACAATTT+CGG - chr3_4:22303802-22303821 None:intergenic 35.0%
! AACAGGGTTATATCAAGTTG+GGG - chr3_4:22303816-22303835 None:intergenic 35.0%
CTAACAGGGTTATATCAAGT+TGG - chr3_4:22303818-22303837 None:intergenic 35.0%
ACTTGATATAACCCTGTTAG+TGG + chr3_4:22303818-22303837 Msa0494410:intron 35.0%
!! GGGTTTTGTAAGATTGAGTT+AGG - chr3_4:22303953-22303972 None:intergenic 35.0%
AGTGCATATAAAGTTAGGGA+GGG - chr3_4:22303973-22303992 None:intergenic 35.0%
TAGTGCATATAAAGTTAGGG+AGG - chr3_4:22303974-22303993 None:intergenic 35.0%
AACCAAATGCCGTAATTAGA+CGG + chr3_4:22304046-22304065 Msa0494410:intron 35.0%
! AAGGAAGCACATCATTTCTT+TGG + chr3_4:22304151-22304170 Msa0494410:intron 35.0%
! AGGAAGCACATCATTTCTTT+GGG + chr3_4:22304152-22304171 Msa0494410:intron 35.0%
ATGATCAAAGAAAGAGACCA+TGG + chr3_4:22304249-22304268 Msa0494410:intron 35.0%
ATAGCGTGTTGTGGAATAAT+AGG + chr3_4:22304386-22304405 Msa0494410:intron 35.0%
CATTTGCCAAATAGCAGATA+TGG - chr3_4:22304457-22304476 None:intergenic 35.0%
ATTTGGCAAATGACAACACT+AGG + chr3_4:22304465-22304484 Msa0494410:intron 35.0%
AAGTGAAGAAGCAACCATTT+GGG - chr3_4:22304671-22304690 None:intergenic 35.0%
AAAGTGAAGAAGCAACCATT+TGG - chr3_4:22304672-22304691 None:intergenic 35.0%
GGAAGCTATTAAGACAACTA+TGG - chr3_4:22304770-22304789 None:intergenic 35.0%
CTTCTTGTGAATTGACATCA+AGG - chr3_4:22304961-22304980 None:intergenic 35.0%
TCTCATATAAAGCTAGGTGA+GGG - chr3_4:22305093-22305112 None:intergenic 35.0%
ACGTACTCTCATATAAAGCT+AGG - chr3_4:22305099-22305118 None:intergenic 35.0%
! GACATGCTTTATTCATGTCA+TGG + chr3_4:22305119-22305138 Msa0494410:intron 35.0%
TAAATACCGCTTAAGATCCA+AGG + chr3_4:22305256-22305275 Msa0494410:intron 35.0%
CTTAAACCTTGGATCTTAAG+CGG - chr3_4:22305265-22305284 None:intergenic 35.0%
! AAAGGTAGAAAGTACATCCA+TGG + chr3_4:22305319-22305338 Msa0494410:intron 35.0%
! AAGGTAGAAAGTACATCCAT+GGG + chr3_4:22305320-22305339 Msa0494410:intron 35.0%
CTCATACTACAACTAACCTT+AGG + chr3_4:22305389-22305408 Msa0494410:intron 35.0%
CACCTTCTAAATCAAACCTA+AGG - chr3_4:22305408-22305427 None:intergenic 35.0%
GGGATTGTGAAGAGAAAAAT+AGG - chr3_4:22305431-22305450 None:intergenic 35.0%
CTTCCTTCAGTGAAAAAACT+AGG - chr3_4:22305498-22305517 None:intergenic 35.0%
GAACTTGATGAAATAGTCCT+TGG + chr3_4:22305521-22305540 Msa0494410:intron 35.0%
GAGTAAGAAAACTGTTTGCA+AGG + chr3_4:22305641-22305660 Msa0494410:intron 35.0%
CAAGGGAAATTGTCTATCAT+GGG + chr3_4:22305659-22305678 Msa0494410:intron 35.0%
GAAATTGTCTATCATGGGTT+TGG + chr3_4:22305664-22305683 Msa0494410:intron 35.0%
!! CGTAGTATTTGTGCTATTTG+AGG - chr3_4:22305786-22305805 None:intergenic 35.0%
AGTGTTAAGGCAAACCTTAA+GGG - chr3_4:22305841-22305860 None:intergenic 35.0%
CATAAAAGCTGTCAAACACA+TGG - chr3_4:22305874-22305893 None:intergenic 35.0%
! CATGTGTTTGACAGCTTTTA+TGG + chr3_4:22305872-22305891 Msa0494410:intron 35.0%
GCCAAAACAGTAAATGGAAA+GGG - chr3_4:22305940-22305959 None:intergenic 35.0%
AGCCAAAACAGTAAATGGAA+AGG - chr3_4:22305941-22305960 None:intergenic 35.0%
AGAAGAGCCAAAACAGTAAA+TGG - chr3_4:22305946-22305965 None:intergenic 35.0%
! GCATATCTTTAAGGGAGATA+TGG + chr3_4:22305988-22306007 Msa0494410:CDS 35.0%
TTAGGACGACAAGTGAATAA+GGG - chr3_4:22306031-22306050 None:intergenic 35.0%
! TTTAGGACGACAAGTGAATA+AGG - chr3_4:22306032-22306051 None:intergenic 35.0%
! CTCTAGATTCCTTCTTGTTT+AGG - chr3_4:22306049-22306068 None:intergenic 35.0%
! GTCAATTATTTTCGGACTGA+GGG - chr3_4:22306130-22306149 None:intergenic 35.0%
CCGAAAATAATTGACCTATC+TGG + chr3_4:22306135-22306154 Msa0494410:intron 35.0%
TATGTGTGAAATGACCAGAT+AGG - chr3_4:22306152-22306171 None:intergenic 35.0%
CATAGTAGAATATGCTGGAT+TGG + chr3_4:22306261-22306280 Msa0494410:intron 35.0%
! TTAGAGCATCTTAATCGCTA+GGG - chr3_4:22306375-22306394 None:intergenic 35.0%
! TTTAGAGCATCTTAATCGCT+AGG - chr3_4:22306376-22306395 None:intergenic 35.0%
! AACTACAGTGTACACCATTT+TGG + chr3_4:22306658-22306677 Msa0494410:three_prime_UTR 35.0%
!! TGTACACCATTTTGGTCATA+TGG + chr3_4:22306666-22306685 Msa0494410:three_prime_UTR 35.0%
!! GTACACCATTTTGGTCATAT+GGG + chr3_4:22306667-22306686 Msa0494410:three_prime_UTR 35.0%
!! TACACCATTTTGGTCATATG+GGG + chr3_4:22306668-22306687 Msa0494410:three_prime_UTR 35.0%
ATTGTTGATCCCAAGATTCT+TGG - chr3_4:22306845-22306864 None:intergenic 35.0%
! GAATTTGTCAGGAGACTTTT+GGG + chr3_4:22306890-22306909 Msa0494410:three_prime_UTR 35.0%
! AATTTGTCAGGAGACTTTTG+GGG + chr3_4:22306891-22306910 Msa0494410:three_prime_UTR 35.0%
TTGAATGAGACACAACACAG+AGG - chr3_4:22298818-22298837 None:intergenic 40.0%
!! CTCAATCAAGAAGCACTTTG+AGG + chr3_4:22299011-22299030 Msa0494410:five_prime_UTR 40.0%
!! AATCAAGAAGCACTTTGAGG+AGG + chr3_4:22299014-22299033 Msa0494410:five_prime_UTR 40.0%
! AAGCACTTTGAGGAGGTTTA+GGG + chr3_4:22299021-22299040 Msa0494410:five_prime_UTR 40.0%
ACATCACAAGGCAACTAAAG+AGG - chr3_4:22299638-22299657 None:intergenic 40.0%
TTAGTTGCCTTGTGATGTTG+AGG + chr3_4:22299640-22299659 Msa0494410:intron 40.0%
TCTTGGAAATATCTCTCCTC+GGG + chr3_4:22299676-22299695 Msa0494410:intron 40.0%
TTTGAGCGGTGAAAAACTTG+CGG + chr3_4:22299721-22299740 Msa0494410:intron 40.0%
GACATACATAGCGAGTGTTT+GGG - chr3_4:22299849-22299868 None:intergenic 40.0%
AGACATACATAGCGAGTGTT+TGG - chr3_4:22299850-22299869 None:intergenic 40.0%
! TCTAGAATAAAAAGGGGCAC+CGG - chr3_4:22299911-22299930 None:intergenic 40.0%
!!! GACTTTTTAAGGCCGTGATA+AGG + chr3_4:22299931-22299950 Msa0494410:intron 40.0%
! TGTTTTCGTTTGCGGAAACA+TGG + chr3_4:22300007-22300026 Msa0494410:intron 40.0%
TTTGCGGAAACATGGTTAGA+AGG + chr3_4:22300015-22300034 Msa0494410:intron 40.0%
ATAAGAACAGTCTGCACACA+AGG - chr3_4:22300087-22300106 None:intergenic 40.0%
ATCACCAACATTATTCGGAG+GGG - chr3_4:22300216-22300235 None:intergenic 40.0%
GTATCACCAACATTATTCGG+AGG - chr3_4:22300218-22300237 None:intergenic 40.0%
CAGAAAGGAGTTTGTGCTTA+TGG + chr3_4:22300345-22300364 Msa0494410:CDS 40.0%
!! TACAGCCGATTCTGAAACAA+GGG - chr3_4:22300451-22300470 None:intergenic 40.0%
AATACCCGAGTTACATCGAA+TGG + chr3_4:22300477-22300496 Msa0494410:CDS 40.0%
AACACCATTCGATGTAACTC+GGG - chr3_4:22300484-22300503 None:intergenic 40.0%
CAACACCATTCGATGTAACT+CGG - chr3_4:22300485-22300504 None:intergenic 40.0%
TGTTCACTGGGAAGAACAAA+GGG - chr3_4:22300540-22300559 None:intergenic 40.0%
TTGTTCACTGGGAAGAACAA+AGG - chr3_4:22300541-22300560 None:intergenic 40.0%
TTGTGCAGATTCTTGATTCC+AGG - chr3_4:22300565-22300584 None:intergenic 40.0%
TGCACAACTTGACTTCCTAA+GGG + chr3_4:22300578-22300597 Msa0494410:CDS 40.0%
GAACAACATCATCTTCCCTT+AGG - chr3_4:22300596-22300615 None:intergenic 40.0%
GCAGCAGCAAATGAACAAAT+CGG - chr3_4:22300648-22300667 None:intergenic 40.0%
! ATTTGTTCATTTGCTGCTGC+TGG + chr3_4:22300648-22300667 Msa0494410:CDS 40.0%
GAACAATGTCCTCATGTACA+TGG + chr3_4:22300687-22300706 Msa0494410:CDS 40.0%
! AAGCATTGTCTTCCACATGA+GGG - chr3_4:22300723-22300742 None:intergenic 40.0%
CTAATACACGATACGCAGAA+CGG - chr3_4:22300924-22300943 None:intergenic 40.0%
CGTAGTAGTAACCCAACATT+AGG + chr3_4:22300951-22300970 Msa0494410:CDS 40.0%
TAGTAACCCAACATTAGGGA+TGG + chr3_4:22300956-22300975 Msa0494410:CDS 40.0%
TGGATGTTAATAGCACACTG+CGG + chr3_4:22300976-22300995 Msa0494410:CDS 40.0%
! TAAGATAGCTTGCGACAGAT+AGG - chr3_4:22301008-22301027 None:intergenic 40.0%
TTACTTGAGCTTTGCCTTGT+AGG - chr3_4:22301093-22301112 None:intergenic 40.0%
! GCATTGATATGCATGTGTAG+GGG + chr3_4:22301271-22301290 Msa0494410:intron 40.0%
AAGCATGTGTGAGACTGTTT+GGG - chr3_4:22301582-22301601 None:intergenic 40.0%
TAAGCATGTGTGAGACTGTT+TGG - chr3_4:22301583-22301602 None:intergenic 40.0%
!! TAGACACATTAGGGCTAGTT+TGG - chr3_4:22301637-22301656 None:intergenic 40.0%
!!! AAGCATTTTGACTTTGGCGA+AGG + chr3_4:22301719-22301738 Msa0494410:intron 40.0%
ATTTACCTTGTAGAAGCAGC+TGG - chr3_4:22301762-22301781 None:intergenic 40.0%
TAAAATGGGTCAAACAGGGA+GGG - chr3_4:22301816-22301835 None:intergenic 40.0%
! AAGTTGCAGTCATTAGCTTC+AGG - chr3_4:22301989-22302008 None:intergenic 40.0%
CGGTATAGCACTATAGTGTA+AGG + chr3_4:22302136-22302155 Msa0494410:intron 40.0%
CCTGATGTCTTTGGCAATTA+TGG - chr3_4:22302437-22302456 None:intergenic 40.0%
CCATAATTGCCAAAGACATC+AGG + chr3_4:22302434-22302453 Msa0494410:CDS 40.0%
AGAGAGAAACCTGATGTCTT+TGG - chr3_4:22302446-22302465 None:intergenic 40.0%
GGCATAGATAAATTGCACCT+TGG + chr3_4:22302776-22302795 Msa0494410:intron 40.0%
!! ATGATAGGTGGTTGATGATG+AGG + chr3_4:22303254-22303273 Msa0494410:intron 40.0%
!! GGTTGATGATGAGGAATTTG+AGG + chr3_4:22303263-22303282 Msa0494410:CDS 40.0%
GATGAGGAATTTGAGGAGAA+TGG + chr3_4:22303270-22303289 Msa0494410:CDS 40.0%
TTGTCCAAAGCAGAAGTAGA+TGG + chr3_4:22303327-22303346 Msa0494410:CDS 40.0%
GTGTTCTCAATGATAGATGG+CGG - chr3_4:22303602-22303621 None:intergenic 40.0%
TTAGTTGACTGTAGCTGTGT+TGG + chr3_4:22303688-22303707 Msa0494410:intron 40.0%
TAACAAGGTCACCACTAACA+GGG - chr3_4:22303832-22303851 None:intergenic 40.0%
!! TCAGATAACGGGTTGTAACA+AGG - chr3_4:22303847-22303866 None:intergenic 40.0%
ACTACACTGGTCATATCTCT+AGG + chr3_4:22303990-22304009 Msa0494410:intron 40.0%
CATATCTCTAGGCAATGTGA+AGG + chr3_4:22304001-22304020 Msa0494410:intron 40.0%
ATCCGTCTAATTACGGCATT+TGG - chr3_4:22304051-22304070 None:intergenic 40.0%
AATGCCGTAATTAGACGGAT+AGG + chr3_4:22304051-22304070 Msa0494410:intron 40.0%
ATGCCGTAATTAGACGGATA+GGG + chr3_4:22304052-22304071 Msa0494410:intron 40.0%
AGGCGGAATTTCCAACATTA+TGG + chr3_4:22304089-22304108 Msa0494410:intron 40.0%
GGCGGAATTTCCAACATTAT+GGG + chr3_4:22304090-22304109 Msa0494410:intron 40.0%
GCGGAATTTCCAACATTATG+GGG + chr3_4:22304091-22304110 Msa0494410:intron 40.0%
CGGAATTTCCAACATTATGG+GGG + chr3_4:22304092-22304111 Msa0494410:intron 40.0%
TGATATTGGACATTCGGACT+AGG + chr3_4:22304125-22304144 Msa0494410:intron 40.0%
! GGAAGCACATCATTTCTTTG+GGG + chr3_4:22304153-22304172 Msa0494410:intron 40.0%
! TCACAACACTGATTAGACCA+TGG - chr3_4:22304269-22304288 None:intergenic 40.0%
! TCGTTCTAAATAGCGTGTTG+TGG + chr3_4:22304377-22304396 Msa0494410:intron 40.0%
! GCTAAGGCGCTATAGATTAA+CGG - chr3_4:22304430-22304449 None:intergenic 40.0%
TTGCCAAATAGCAGATATGG+CGG - chr3_4:22304454-22304473 None:intergenic 40.0%
GGATAGCAGCAATCTAAGTT+TGG - chr3_4:22304544-22304563 None:intergenic 40.0%
TCATATAAAGCTAGGTGAGG+GGG - chr3_4:22305091-22305110 None:intergenic 40.0%
CTCATATAAAGCTAGGTGAG+GGG - chr3_4:22305092-22305111 None:intergenic 40.0%
CTCTCATATAAAGCTAGGTG+AGG - chr3_4:22305094-22305113 None:intergenic 40.0%
! AGGTAGAAAGTACATCCATG+GGG + chr3_4:22305321-22305340 Msa0494410:intron 40.0%
!! ATGTTCTAAGAACTCCAGAG+AGG - chr3_4:22305365-22305384 None:intergenic 40.0%
TTCACAATCCCATTGTGATG+TGG + chr3_4:22305440-22305459 Msa0494410:intron 40.0%
TCACAACACCACATCACAAT+GGG - chr3_4:22305451-22305470 None:intergenic 40.0%
!!! TGCCCTAGTTTTTTCACTGA+AGG + chr3_4:22305492-22305511 Msa0494410:intron 40.0%
ATTAATGTCTGGCAATGCCA+AGG - chr3_4:22305541-22305560 None:intergenic 40.0%
GCAAGGGAAATTGTCTATCA+TGG + chr3_4:22305658-22305677 Msa0494410:intron 40.0%
! TTGTCTATCATGGGTTTGGT+CGG + chr3_4:22305668-22305687 Msa0494410:intron 40.0%
CAGTGTTAAGGCAAACCTTA+AGG - chr3_4:22305842-22305861 None:intergenic 40.0%
GTTTGCCTTAACACTGAACT+TGG + chr3_4:22305846-22305865 Msa0494410:intron 40.0%
! GCCCTTTCCATTTACTGTTT+TGG + chr3_4:22305936-22305955 Msa0494410:CDS 40.0%
! TCTTTAAGGGAGATATGGTC+AGG + chr3_4:22305993-22306012 Msa0494410:CDS 40.0%
ATATGGTCAGGTCATTCTTG+TGG + chr3_4:22306005-22306024 Msa0494410:intron 40.0%
ACTTGTCGTCCTAAACAAGA+AGG + chr3_4:22306037-22306056 Msa0494410:intron 40.0%
CTGAGGGAGTAATTCATAAC+AGG - chr3_4:22306114-22306133 None:intergenic 40.0%
! GGTCAATTATTTTCGGACTG+AGG - chr3_4:22306131-22306150 None:intergenic 40.0%
!! ATTTTGGTCATATGGGGAGA+GGG + chr3_4:22306674-22306693 Msa0494410:three_prime_UTR 40.0%
TGACATTGCACCAAGAATCT+TGG + chr3_4:22306832-22306851 Msa0494410:three_prime_UTR 40.0%
GACATTGCACCAAGAATCTT+GGG + chr3_4:22306833-22306852 Msa0494410:three_prime_UTR 40.0%
! GGAATTTGTCAGGAGACTTT+TGG + chr3_4:22306889-22306908 Msa0494410:three_prime_UTR 40.0%
ACACAACACAGAGGTTAGGT+TGG - chr3_4:22298809-22298828 None:intergenic 45.0%
TGAGACACAACACAGAGGTT+AGG - chr3_4:22298813-22298832 None:intergenic 45.0%
TGAGGTAGCCAAAAAACGTG+AGG - chr3_4:22298960-22298979 None:intergenic 45.0%
! GAAGCACTTTGAGGAGGTTT+AGG + chr3_4:22299020-22299039 Msa0494410:five_prime_UTR 45.0%
ACTTTGATCCTAACGCCTCT+TGG + chr3_4:22299050-22299069 Msa0494410:five_prime_UTR 45.0%
GAACACAATCAGGTTTCCAG+AGG + chr3_4:22299612-22299631 Msa0494410:intron 45.0%
! GAGGTCAGGGTGTTAAATCT+TGG + chr3_4:22299659-22299678 Msa0494410:intron 45.0%
CTTGGAAATATCTCTCCTCG+GGG + chr3_4:22299677-22299696 Msa0494410:intron 45.0%
TTGGAAATATCTCTCCTCGG+GGG + chr3_4:22299678-22299697 Msa0494410:intron 45.0%
! AATGCTGCTTGAATGCACGT+TGG + chr3_4:22299806-22299825 Msa0494410:intron 45.0%
ATAGCGAGTGTTTGGGAAAG+CGG - chr3_4:22299842-22299861 None:intergenic 45.0%
AAAGCCCCTCCGAATAATGT+TGG + chr3_4:22300209-22300228 Msa0494410:intron 45.0%
! GTGCTTGTGTTGTCTTGTTG+TGG + chr3_4:22300304-22300323 Msa0494410:intron 45.0%
!! ACAGCCGATTCTGAAACAAG+GGG - chr3_4:22300450-22300469 None:intergenic 45.0%
!! GTACAGCCGATTCTGAAACA+AGG - chr3_4:22300452-22300471 None:intergenic 45.0%
GTTTCAGAATCGGCTGTACT+TGG + chr3_4:22300453-22300472 Msa0494410:CDS 45.0%
! TGATTCCAGGCTTGTTCACT+GGG - chr3_4:22300552-22300571 None:intergenic 45.0%
! TTGATTCCAGGCTTGTTCAC+TGG - chr3_4:22300553-22300572 None:intergenic 45.0%
CTGCACAACTTGACTTCCTA+AGG + chr3_4:22300577-22300596 Msa0494410:CDS 45.0%
GAACAAATCGGAAGCTCAGA+AGG - chr3_4:22300636-22300655 None:intergenic 45.0%
GGAAATTTATGCCCCTCATG+TGG + chr3_4:22300708-22300727 Msa0494410:CDS 45.0%
AGCATTGTCTTCCACATGAG+GGG - chr3_4:22300722-22300741 None:intergenic 45.0%
! CAAGCATTGTCTTCCACATG+AGG - chr3_4:22300724-22300743 None:intergenic 45.0%
GACAATGCTTGCATCCTTTC+CGG + chr3_4:22300733-22300752 Msa0494410:CDS 45.0%
GTTCTTCTCTTTCTTCAGGC+CGG - chr3_4:22300755-22300774 None:intergenic 45.0%
GCGTGTTCTTTCAAAGCCTA+CGG + chr3_4:22300857-22300876 Msa0494410:CDS 45.0%
GGATGTTAATAGCACACTGC+GGG + chr3_4:22300977-22300996 Msa0494410:CDS 45.0%
AGACTGTTTGGGAGAGCTTA+AGG - chr3_4:22301571-22301590 None:intergenic 45.0%
!! ACATTAGGGCTAGTTTGGAC+AGG - chr3_4:22301632-22301651 None:intergenic 45.0%
GTAAAATGGGTCAAACAGGG+AGG - chr3_4:22301817-22301836 None:intergenic 45.0%
TAGTGCTATACCGCTGCTAT+AGG - chr3_4:22302129-22302148 None:intergenic 45.0%
TTGCAGCATGCATATCGTGA+TGG + chr3_4:22302361-22302380 Msa0494410:intron 45.0%
! AGGTAGCTTTGCGTCATCTT+GGG + chr3_4:22302395-22302414 Msa0494410:CDS 45.0%
GGTTTCTCTCTACCTTATCC+TGG + chr3_4:22302455-22302474 Msa0494410:intron 45.0%
! ACATGATGCCATCAGGTTGT+CGG + chr3_4:22302517-22302536 Msa0494410:intron 45.0%
AAGGAAATCCGACAACCTGA+TGG - chr3_4:22302528-22302547 None:intergenic 45.0%
AATGCTTCAACATGGTGCCT+GGG + chr3_4:22302681-22302700 Msa0494410:intron 45.0%
CATCATTTCTAACGAGACCC+AGG - chr3_4:22302701-22302720 None:intergenic 45.0%
TGAGTGCAACAAATGGCTAG+TGG + chr3_4:22303051-22303070 Msa0494410:intron 45.0%
GAGTGCAACAAATGGCTAGT+GGG + chr3_4:22303052-22303071 Msa0494410:intron 45.0%
AAATGGCTAGTGGGAGAGAA+TGG + chr3_4:22303061-22303080 Msa0494410:intron 45.0%
GTGCTATATTGGAGGACTTG+TGG + chr3_4:22303572-22303591 Msa0494410:intron 45.0%
GTAACAAGGTCACCACTAAC+AGG - chr3_4:22303833-22303852 None:intergenic 45.0%
TATGCCTTAGAATCTGGGTC+TGG + chr3_4:22303927-22303946 Msa0494410:intron 45.0%
! TCTAGGCAATGTGAAGGTGT+TGG + chr3_4:22304007-22304026 Msa0494410:intron 45.0%
TGCCGTAATTAGACGGATAG+GGG + chr3_4:22304053-22304072 Msa0494410:intron 45.0%
CTCCCCTATCCGTCTAATTA+CGG - chr3_4:22304058-22304077 None:intergenic 45.0%
TGGAAATTCCGCCTTTGTTG+CGG - chr3_4:22304083-22304102 None:intergenic 45.0%
GGGGTTCGCTAGTATGATAT+TGG + chr3_4:22304111-22304130 Msa0494410:intron 45.0%
GTATTCTGCAGAGACAACAC+AGG - chr3_4:22304791-22304810 None:intergenic 45.0%
! CAACAAAAAAGCTTCGGTGC+TGG - chr3_4:22304920-22304939 None:intergenic 45.0%
!!! CAGCACCGAAGCTTTTTTGT+TGG + chr3_4:22304918-22304937 Msa0494410:intron 45.0%
TGTATGAACAGCTTCCTCTC+TGG + chr3_4:22305348-22305367 Msa0494410:intron 45.0%
GTCACAACACCACATCACAA+TGG - chr3_4:22305452-22305471 None:intergenic 45.0%
! TGTCTATCATGGGTTTGGTC+GGG + chr3_4:22305669-22305688 Msa0494410:intron 45.0%
GATTTGATGGAGAAACTCGC+TGG + chr3_4:22305691-22305710 Msa0494410:intron 45.0%
TGGCTCCAAGTTCAGTGTTA+AGG - chr3_4:22305854-22305873 None:intergenic 45.0%
!! ATGGAAAGGGCATTGCACAA+AGG - chr3_4:22305927-22305946 None:intergenic 45.0%
CTCTCCCCATATGACCAAAA+TGG - chr3_4:22306675-22306694 None:intergenic 45.0%
!! CATTTTGGTCATATGGGGAG+AGG + chr3_4:22306673-22306692 Msa0494410:three_prime_UTR 45.0%
! TTTTGGTCATATGGGGAGAG+GGG + chr3_4:22306675-22306694 Msa0494410:three_prime_UTR 45.0%
!!! TTTATATGAATTTAAAATAT+GGG + chr3_4:22306926-22306945 Msa0494410:three_prime_UTR 5.0%
AAGGCAACTAAAGAGGCCTC+TGG - chr3_4:22299631-22299650 None:intergenic 50.0%
TGCCTTGTGATGTTGAGGTC+AGG + chr3_4:22299645-22299664 Msa0494410:intron 50.0%
GCCTTGTGATGTTGAGGTCA+GGG + chr3_4:22299646-22299665 Msa0494410:intron 50.0%
ACCCTGACCTCAACATCACA+AGG - chr3_4:22299650-22299669 None:intergenic 50.0%
AATATCTCTCCTCGGGGGTA+AGG + chr3_4:22299683-22299702 Msa0494410:intron 50.0%
CGGTGAAAAACTTGCGGTGA+TGG + chr3_4:22299727-22299746 Msa0494410:intron 50.0%
!! GAATAAAAAGGGGCACCGGA+TGG - chr3_4:22299907-22299926 None:intergenic 50.0%
CTCATGGAGCGTGTCTGAAA+GGG + chr3_4:22300159-22300178 Msa0494410:CDS 50.0%
TCATGGAGCGTGTCTGAAAG+GGG + chr3_4:22300160-22300179 Msa0494410:CDS 50.0%
! TGAAACAAGGGGCTGGTGTT+CGG - chr3_4:22300439-22300458 None:intergenic 50.0%
! CCAGCCCCTTGTTTCAGAAT+CGG + chr3_4:22300443-22300462 Msa0494410:CDS 50.0%
TTCTTCCCAGTGAACAAGCC+TGG + chr3_4:22300544-22300563 Msa0494410:CDS 50.0%
TCTCTTTCTTCAGGCCGGAA+AGG - chr3_4:22300750-22300769 None:intergenic 50.0%
!! GCTTTGAAAGAACACGCTCG+AGG - chr3_4:22300854-22300873 None:intergenic 50.0%
GTTCAGAGTGACGCCCTATT+TGG + chr3_4:22301352-22301371 Msa0494410:intron 50.0%
! AGAAGCAGCTGGTACCGAAA+GGG - chr3_4:22301751-22301770 None:intergenic 50.0%
! TAGAAGCAGCTGGTACCGAA+AGG - chr3_4:22301752-22301771 None:intergenic 50.0%
GAGGCAATAGCCTATAGCAG+CGG + chr3_4:22302116-22302135 Msa0494410:intron 50.0%
ATATCGTGATGGCCGTCTTG+AGG + chr3_4:22302372-22302391 Msa0494410:CDS 50.0%
GCAAAGCTACCTCCTCAAGA+CGG - chr3_4:22302387-22302406 None:intergenic 50.0%
! GAGGTAGCTTTGCGTCATCT+TGG + chr3_4:22302394-22302413 Msa0494410:CDS 50.0%
! GGTAGCTTTGCGTCATCTTG+GGG + chr3_4:22302396-22302415 Msa0494410:CDS 50.0%
CAGGCACCATGTTGAAGCAT+TGG - chr3_4:22302682-22302701 None:intergenic 50.0%
CAATGCTTCAACATGGTGCC+TGG + chr3_4:22302680-22302699 Msa0494410:intron 50.0%
AAGCTTGACCATACCGCTCA+AGG + chr3_4:22302895-22302914 Msa0494410:intron 50.0%
TAGGCCAGACCCAGATTCTA+AGG - chr3_4:22303934-22303953 None:intergenic 50.0%
!! AGGCAATGTGAAGGTGTTGG+AGG + chr3_4:22304010-22304029 Msa0494410:intron 50.0%
CGTAATTAGACGGATAGGGG+AGG + chr3_4:22304056-22304075 Msa0494410:intron 50.0%
CTAGCGAACCCCCATAATGT+TGG - chr3_4:22304103-22304122 None:intergenic 50.0%
! GGACATTCGGACTAGGTAGA+AGG + chr3_4:22304132-22304151 Msa0494410:intron 50.0%
! GCTATAGCTTTACAGCGCAG+TGG - chr3_4:22304329-22304348 None:intergenic 50.0%
!! GAGGGGGTATTGATAAGACG+CGG - chr3_4:22305075-22305094 None:intergenic 50.0%
CTGTTCATACAGCAACCCCA+TGG - chr3_4:22305339-22305358 None:intergenic 50.0%
! TGGGTTTGGTCGGGATTTGA+TGG + chr3_4:22305678-22305697 Msa0494410:intron 50.0%
TTGATGGAGAAACTCGCTGG+TGG + chr3_4:22305694-22305713 Msa0494410:intron 50.0%
TGCGGATGAAAGAGCCCTTA+AGG + chr3_4:22305824-22305843 Msa0494410:intron 50.0%
GAGCATCTTAATCGCTAGGG+AGG - chr3_4:22306372-22306391 None:intergenic 50.0%
!! GCACAGTGCAGCTTTTTCTC+TGG - chr3_4:22306503-22306522 None:intergenic 50.0%
! TATGCATAGCCTTACCCCCG+AGG - chr3_4:22299695-22299714 None:intergenic 55.0%
TATCCTCCCCAGATTCCACC+TGG + chr3_4:22299869-22299888 Msa0494410:intron 55.0%
GCTCATGGAGCGTGTCTGAA+AGG + chr3_4:22300158-22300177 Msa0494410:CDS 55.0%
GTGCTTATGGTAGTCGCTGC+AGG + chr3_4:22300358-22300377 Msa0494410:CDS 55.0%
!! CCGATTCTGAAACAAGGGGC+TGG - chr3_4:22300446-22300465 None:intergenic 55.0%
CTGCTGGAAACTGTCCACGA+GGG + chr3_4:22300664-22300683 Msa0494410:CDS 55.0%
TGCTGGAAACTGTCCACGAG+GGG + chr3_4:22300665-22300684 Msa0494410:CDS 55.0%
TGAGGACATTGTTCCCCTCG+TGG - chr3_4:22300681-22300700 None:intergenic 55.0%
AACTTACGCTCAGCTGCCGT+AGG - chr3_4:22300876-22300895 None:intergenic 55.0%
ACGGCAGCTGAGCGTAAGTT+TGG + chr3_4:22300876-22300895 Msa0494410:CDS 55.0%
GGCGAAGGAAACTGCCCTTT+CGG + chr3_4:22301734-22301753 Msa0494410:CDS 55.0%
CGGTACCAGCTGCTTCTACA+AGG + chr3_4:22301754-22301773 Msa0494410:intron 55.0%
ATGGGTCAAACAGGGAGGGA+GGG - chr3_4:22301812-22301831 None:intergenic 55.0%
AATGGGTCAAACAGGGAGGG+AGG - chr3_4:22301813-22301832 None:intergenic 55.0%
ATAGGGGAGGACCGCAACAA+AGG + chr3_4:22304069-22304088 Msa0494410:intron 55.0%
TAGCAGATATGGCGGCGCTA+AGG - chr3_4:22304446-22304465 None:intergenic 55.0%
GCGCCGCCATATCTGCTATT+TGG + chr3_4:22304448-22304467 Msa0494410:intron 55.0%
!! CGGTGCTGGTGCATCTTGTT+TGG - chr3_4:22304906-22304925 None:intergenic 55.0%
ATGGAGAAACTCGCTGGTGG+TGG + chr3_4:22305697-22305716 Msa0494410:intron 55.0%
GGGCTCTTTCATCCGCACAA+GGG - chr3_4:22305821-22305840 None:intergenic 55.0%
AGGGCTCTTTCATCCGCACA+AGG - chr3_4:22305822-22305841 None:intergenic 55.0%
CTCCCCAGATTCCACCTGGT+GGG + chr3_4:22299873-22299892 Msa0494410:intron 60.0%
CTCCCACCAGGTGGAATCTG+GGG - chr3_4:22299878-22299897 None:intergenic 60.0%
GCTCCCACCAGGTGGAATCT+GGG - chr3_4:22299879-22299898 None:intergenic 60.0%
GCTGCTGGAAACTGTCCACG+AGG + chr3_4:22300663-22300682 Msa0494410:CDS 60.0%
TCGTGATGGCCGTCTTGAGG+AGG + chr3_4:22302375-22302394 Msa0494410:CDS 60.0%
CGTCATCTTGGGGCTGCAGA+TGG + chr3_4:22302406-22302425 Msa0494410:CDS 60.0%
AAACCATGCGCGCCCTTGTG+CGG + chr3_4:22305806-22305825 Msa0494410:intron 60.0%
CCACCAGGTGGAATCTGGGG+AGG - chr3_4:22299875-22299894 None:intergenic 65.0%
CCTCCCCAGATTCCACCTGG+TGG + chr3_4:22299872-22299891 Msa0494410:intron 65.0%
GGCTCCCACCAGGTGGAATC+TGG - chr3_4:22299880-22299899 None:intergenic 65.0%
TGGTGGGAGCCTCGTCCATC+CGG + chr3_4:22299889-22299908 Msa0494410:intron 65.0%
!! AAAGGGGCACCGGATGGACG+AGG - chr3_4:22299901-22299920 None:intergenic 65.0%
GGGGAGGACCGCAACAAAGG+CGG + chr3_4:22304072-22304091 Msa0494410:intron 65.0%
TGGACGAGGCTCCCACCAGG+TGG - chr3_4:22299887-22299906 None:intergenic 70.0%
GGATGGACGAGGCTCCCACC+AGG - chr3_4:22299890-22299909 None:intergenic 70.0%
! CATCCGCACAAGGGCGCGCA+TGG - chr3_4:22305812-22305831 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 22298775 22306978 22298775 ID=Msa0494410;Name=Msa0494410
chr3_4 mRNA 22298775 22306978 22298775 ID=Msa0494410-mRNA-1;Parent=Msa0494410;Name=Msa0494410-mRNA-1;_AED=0.11;_eAED=0.12;_QI=332|0.25|0.55|0.77|0.75|0.88|9|416|447
chr3_4 exon 22298775 22299117 22298775 ID=Msa0494410-mRNA-1:exon:5606;Parent=Msa0494410-mRNA-1
chr3_4 exon 22300139 22300226 22300139 ID=Msa0494410-mRNA-1:exon:5607;Parent=Msa0494410-mRNA-1
chr3_4 exon 22300330 22301108 22300330 ID=Msa0494410-mRNA-1:exon:5608;Parent=Msa0494410-mRNA-1
chr3_4 exon 22301722 22301755 22301722 ID=Msa0494410-mRNA-1:exon:5609;Parent=Msa0494410-mRNA-1
chr3_4 exon 22302367 22302455 22302367 ID=Msa0494410-mRNA-1:exon:5610;Parent=Msa0494410-mRNA-1
chr3_4 exon 22302571 22302592 22302571 ID=Msa0494410-mRNA-1:exon:5611;Parent=Msa0494410-mRNA-1
chr3_4 exon 22303261 22303405 22303261 ID=Msa0494410-mRNA-1:exon:5612;Parent=Msa0494410-mRNA-1
chr3_4 exon 22305913 22306014 22305913 ID=Msa0494410-mRNA-1:exon:5613;Parent=Msa0494410-mRNA-1
chr3_4 exon 22306489 22306978 22306489 ID=Msa0494410-mRNA-1:exon:5614;Parent=Msa0494410-mRNA-1
chr3_4 five_prime_UTR 22298775 22299106 22298775 ID=Msa0494410-mRNA-1:five_prime_utr;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22299107 22299117 22299107 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22300139 22300226 22300139 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22300330 22301108 22300330 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22301722 22301755 22301722 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22302367 22302455 22302367 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22302571 22302592 22302571 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22303261 22303405 22303261 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22305913 22306014 22305913 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 CDS 22306489 22306562 22306489 ID=Msa0494410-mRNA-1:cds;Parent=Msa0494410-mRNA-1
chr3_4 three_prime_UTR 22306563 22306978 22306563 ID=Msa0494410-mRNA-1:three_prime_utr;Parent=Msa0494410-mRNA-1
Gene Sequence

>Msa0494410

ATGTCAAAGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCGTGTCTGAAAGGGGAGCATTGTGAGTTTTCTCATGACTGGAAAGCCCCTCCGAATAATATATGCACATTTTATCAGAAAGGAGTTTGTGCTTATGGTAGTCGCTGCAGGTATGATCATGTCAAAGCTTCTCGAGCACAGTCCTCTACTCCATCTTCTTCAATAACCGAACACCAGCCCCTTGTTTCAGAATCGGCTGTACTTGGTAATACCCGAGTTACATCGAATGGTGTTGCTACAGCTGCAGAATTTTCTCTTTTCAGCACTCCCTTTGTTCTTCCCAGTGAACAAGCCTGGAATCAAGAATCTGCACAACTTGACTTCCTAAGGGAAGATGATGTTGTTCAATCGGTAATTACTTCACCTTCTGAGCTTCCGATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAACAATGTCCTCATGTACATGGAAATTTATGCCCCTCATGTGGAAGACAATGCTTGCATCCTTTCCGGCCTGAAGAAAGAGAAGAACATATGATGAGTTGCAAAAATAAGCAAAAGCATCTCGAGGCATTGAAAAGAAGTCAAGAAATTGAATGCAGTGTTTGCCTCGAGCGTGTTCTTTCAAAGCCTACGGCAGCTGAGCGTAAGTTTGGTCTGCTATCTGAATGTGATCATCCGTTCTGCGTATCGTGTATTAGAAATTGGCGTAGTAGTAACCCAACATTAGGGATGGATGTTAATAGCACACTGCGGGCTTGTCCTATCTGTCGCAAGCTATCTTACTTTGTCGTTCCAAGTGTTATTTGGTATGCTACAAGTGAAGAAAAAATGGAAATCATTGATACCTACAAGGCAAAGCTCAACATTTTGACTTTGGCGAAGGAAACTGCCCTTTCGCATGCATATCGTGATGGCCGTCTTGAGGAGGTAGCTTTGCGTCATCTTGGGGCTGCAGATGGCGACACCATAATTGCCAAAGACATCAGGTCGGTGTTCACATTTTGTGATGTGGTTGATGATGAGGAATTTGAGGAGAATGGTGAAAAATCCATAGAAGTGTTGGTTAATGTTGAGTTGTCCAAAGCAGAAGTAGATGGAAATACATCACTTGATAACGGCAATGAAGTTGATTATTTTTCGGTTGAAGAAGATGATTATTCTCTGCCTTTGTGCAATGCCCTTTCCATTTACTGTTTTGGCTCTTCTGTGTCTTTCTCTCCCAATGATAGCATATCTTTAAGGGAGATATGGTCAGTTTCAAAGGTACCAGAGAAAAAGCTGCACTGTGCATTCCATCATGTAATAAAAGTGCAAATTGTAAAATGGTAG
Protein sequence

>Msa0494410

MSKRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASRAQSSTPSSSITEHQPLVSESAVLGNTRVTSNGVATAAEFSLFSTPFVLPSEQAWNQESAQLDFLREDDVVQSVITSPSELPICSFAAAGNCPRGEQCPHVHGNLCPSCGRQCLHPFRPEEREEHMMSCKNKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCVSCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKMEIIDTYKAKLNILTLAKETALSHAYRDGRLEEVALRHLGAADGDTIIAKDIRSVFTFCDVVDDEEFEENGEKSIEVLVNVELSKAEVDGNTSLDNGNEVDYFSVEEDDYSLPLCNALSIYCFGSSVSFSPNDSISLREIWSVSKVPEKKLHCAFHHVIKVQIVKW*