Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494720 | XP_003600257.1 | 69.888 | 269 | 64 | 2 | 18 | 269 | 1 | 269 | 9.77e-124 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494720 | sp|A0SWL0|FRL2A_ARATH | 34.783 | 253 | 146 | 7 | 20 | 260 | 2 | 247 | 3.15e-32 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494720 | G7J207 | 69.888 | 269 | 64 | 2 | 18 | 269 | 1 | 269 | 4.66e-124 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0449820 | Msa0494720 | 0.812762 | 3.601121e-51 | -8.615850e-47 |
| Msa0494720 | Msa1299360 | 0.808812 | 2.576452e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494720 | MtrunA17_Chr3g0101121 | 69.888 | 269 | 64 | 2 | 18 | 269 | 1 | 269 | 8.98e-128 | 372 |
| Msa0494720 | MtrunA17_Chr5g0445281 | 35.664 | 286 | 142 | 5 | 18 | 261 | 1 | 286 | 5.23e-42 | 151 |
| Msa0494720 | MtrunA17_Chr8g0337661 | 34.444 | 180 | 94 | 5 | 104 | 263 | 175 | 350 | 3.77e-21 | 92.4 |
| Msa0494720 | MtrunA17_Chr8g0337651 | 34.078 | 179 | 96 | 6 | 104 | 263 | 175 | 350 | 8.10e-21 | 91.7 |
| Msa0494720 | MtrunA17_Chr4g0053711 | 28.729 | 181 | 111 | 5 | 101 | 263 | 160 | 340 | 2.08e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494720 | AT1G31814.1 | 34.783 | 253 | 146 | 7 | 20 | 260 | 2 | 247 | 3.58e-33 | 126 |
| Msa0494720 | AT5G16320.1 | 34.944 | 269 | 146 | 7 | 20 | 267 | 2 | 262 | 1.78e-30 | 119 |
| Msa0494720 | AT5G48385.1 | 32.044 | 181 | 99 | 6 | 104 | 263 | 178 | 355 | 9.10e-19 | 85.9 |
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTTCAAGGATAAAATT+AGG | 0.131403 | 3_4:-23014921 | Msa0494720:CDS |
| CATCGTTTGGGTTTGAAATT+AGG | 0.140544 | 3_4:+23015013 | None:intergenic |
| TTGTATTTGGTTTATGCTTT+TGG | 0.227751 | 3_4:-23014625 | Msa0494720:CDS |
| GGGTGATTGTGCGAATATTT+TGG | 0.238502 | 3_4:-23014662 | Msa0494720:CDS |
| GGTGCCGTGGCTGCGGTTAA+TGG | 0.308429 | 3_4:-23014562 | Msa0494720:CDS |
| GTTCGAGTGATTGGAGAAAT+TGG | 0.335376 | 3_4:+23015055 | None:intergenic |
| CAATTTCAAGGATAAAATTA+GGG | 0.343731 | 3_4:-23014920 | Msa0494720:CDS |
| TTTGTTTCTTGGAATCGATT+AGG | 0.345585 | 3_4:+23015187 | None:intergenic |
| TTCAATGTTGTAGTTATTGT+TGG | 0.346668 | 3_4:+23015231 | None:intergenic |
| ATCGTTTGGGTTTGAAATTA+GGG | 0.347807 | 3_4:+23015014 | None:intergenic |
| TGGGTTTGAAATTAGGGTTT+TGG | 0.350515 | 3_4:+23015020 | None:intergenic |
| ATGCAGCTTTGTCGGGATAT+TGG | 0.363980 | 3_4:-23014532 | Msa0494720:CDS |
| GTGGATGAGCTTGTTGGGTT+TGG | 0.376593 | 3_4:-23014583 | Msa0494720:CDS |
| GGGATTGTTGTTCGAGTGAT+TGG | 0.380935 | 3_4:+23015046 | None:intergenic |
| GGTTTGACGGATAGAATTCC+TGG | 0.389756 | 3_4:-23014511 | Msa0494720:CDS |
| TTAGTGTGGATGAGCTTGTT+GGG | 0.423803 | 3_4:-23014588 | Msa0494720:CDS |
| GAATGGAAGTTTCAATCATA+AGG | 0.434851 | 3_4:-23014812 | Msa0494720:CDS |
| GGCGAGGGAGAGAGCGTTGA+AGG | 0.439120 | 3_4:-23014713 | Msa0494720:CDS |
| GGGTTTGTGTTATGTTGTTG+AGG | 0.448510 | 3_4:-23014771 | Msa0494720:CDS |
| GAGAGTTCATGCAGCTTTGT+CGG | 0.448805 | 3_4:-23014540 | Msa0494720:CDS |
| GGTTTGTGTTATGTTGTTGA+GGG | 0.460115 | 3_4:-23014770 | Msa0494720:CDS |
| AGTGTTGGATAGAGGTGAAG+TGG | 0.460848 | 3_4:+23015094 | None:intergenic |
| TTACGTTACCTACAATTTCA+AGG | 0.461339 | 3_4:-23014932 | Msa0494720:CDS |
| AGAGTTCATGCAGCTTTGTC+GGG | 0.461740 | 3_4:-23014539 | Msa0494720:CDS |
| TTGTCGGGATATTGGTTTGA+CGG | 0.468149 | 3_4:-23014524 | Msa0494720:CDS |
| CATAAGGGAATGAGAGAGAC+GGG | 0.477946 | 3_4:-23014796 | Msa0494720:CDS |
| CGTTGAAGGTGGCGATTGGT+TGG | 0.490146 | 3_4:-23014699 | Msa0494720:CDS |
| ATGAAAACTCGAATAAATTG+AGG | 0.492723 | 3_4:-23014993 | Msa0494720:CDS |
| GGTTGGAAAGTGAGGTTGAC+GGG | 0.498480 | 3_4:-23014682 | Msa0494720:CDS |
| GTGTTGGATAGAGGTGAAGT+GGG | 0.501873 | 3_4:+23015095 | None:intergenic |
| AATGGAAGTTTCAATCATAA+GGG | 0.506210 | 3_4:-23014811 | Msa0494720:CDS |
| AGTGAGAGAGTGTTGGATAG+AGG | 0.509237 | 3_4:+23015086 | None:intergenic |
| AATCTTCACTCCCTCTCTCA+TGG | 0.510308 | 3_4:-23015131 | Msa0494720:CDS |
| TTTAGTGTGGATGAGCTTGT+TGG | 0.511173 | 3_4:-23014589 | Msa0494720:CDS |
| AGAATCATCATCCCTGCATC+CGG | 0.516167 | 3_4:+23014862 | None:intergenic |
| GATGATGATTCTGCAATCAC+TGG | 0.518515 | 3_4:-23014851 | Msa0494720:CDS |
| GAGGGTCCTGTGTGAGAAGA+TGG | 0.523416 | 3_4:-23014974 | Msa0494720:CDS |
| ACTAACTCAACAGCCTTACC+AGG | 0.526604 | 3_4:+23014493 | None:intergenic |
| GGGAATGAGAGAGACGGGGA+GGG | 0.530022 | 3_4:-23014791 | Msa0494720:CDS |
| TGAAAACTCGAATAAATTGA+GGG | 0.535928 | 3_4:-23014992 | Msa0494720:CDS |
| TGGGTTTGGTGCCGTGGCTG+CGG | 0.540127 | 3_4:-23014569 | Msa0494720:CDS |
| AGCAGTGAGTGAGAGAGTGT+TGG | 0.541124 | 3_4:+23015079 | None:intergenic |
| CTCTCCATTAACCGCAGCCA+CGG | 0.543614 | 3_4:+23014558 | None:intergenic |
| AGAGCGTTGAAGGTGGCGAT+TGG | 0.550553 | 3_4:-23014703 | Msa0494720:CDS |
| TGGCGATTGGTTGGAAAGTG+AGG | 0.553292 | 3_4:-23014690 | Msa0494720:CDS |
| TCGAGTTGAAGCCATGAGAG+AGG | 0.553298 | 3_4:+23015120 | None:intergenic |
| TGTGAGAAGATGGATGGTAT+AGG | 0.553599 | 3_4:-23014964 | Msa0494720:CDS |
| GCTTGTTGGGTTTGGTGCCG+TGG | 0.556891 | 3_4:-23014575 | Msa0494720:CDS |
| GACGGATAGAATTCCTGGTA+AGG | 0.561643 | 3_4:-23014506 | Msa0494720:CDS |
| ATGATTCTGCAATCACTGGA+AGG | 0.569704 | 3_4:-23014847 | Msa0494720:CDS |
| GAGGGAGAGAGCGTTGAAGG+TGG | 0.576880 | 3_4:-23014710 | Msa0494720:CDS |
| CGAGTTGAAGCCATGAGAGA+GGG | 0.577599 | 3_4:+23015121 | None:intergenic |
| TGATTCTGCAATCACTGGAA+GGG | 0.599352 | 3_4:-23014846 | Msa0494720:CDS |
| TCATAAGGGAATGAGAGAGA+CGG | 0.608164 | 3_4:-23014797 | Msa0494720:CDS |
| TATTGTTGAAGAATTTAGTG+TGG | 0.613716 | 3_4:-23014602 | Msa0494720:CDS |
| TGGTGTGAATGTGAGTGGTA+AGG | 0.620382 | 3_4:-23014734 | Msa0494720:CDS |
| AGGGAATGAGAGAGACGGGG+AGG | 0.623986 | 3_4:-23014792 | Msa0494720:CDS |
| GAATGTGAGTGGTAAGGCGA+GGG | 0.646474 | 3_4:-23014728 | Msa0494720:CDS |
| TACCATCCATCTTCTCACAC+AGG | 0.653218 | 3_4:+23014968 | None:intergenic |
| TGGTTGGAAAGTGAGGTTGA+CGG | 0.655329 | 3_4:-23014683 | Msa0494720:CDS |
| GGTTCAAGCAGAACTTCGCG+AGG | 0.659529 | 3_4:-23014899 | Msa0494720:CDS |
| GTTTCTGGTGTGAATGTGAG+TGG | 0.663282 | 3_4:-23014739 | Msa0494720:CDS |
| GTCCTGTGTGAGAAGATGGA+TGG | 0.667801 | 3_4:-23014970 | Msa0494720:CDS |
| TGAATGTGAGTGGTAAGGCG+AGG | 0.697886 | 3_4:-23014729 | Msa0494720:CDS |
| ATAAGGGAATGAGAGAGACG+GGG | 0.745717 | 3_4:-23014795 | Msa0494720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATCCTTGAAATTGT+AGG | + | chr3_4:23014844-23014863 | None:intergenic | 20.0% |
| !! | ACAATTTCAAGGATAAAATT+AGG | - | chr3_4:23014844-23014863 | Msa0494720:CDS | 20.0% |
| !! | CAATTTCAAGGATAAAATTA+GGG | - | chr3_4:23014845-23014864 | Msa0494720:CDS | 20.0% |
| !!! | AATTTTATCCTTGAAATTGT+AGG | + | chr3_4:23014844-23014863 | None:intergenic | 20.0% |
| !! | ACAATTTCAAGGATAAAATT+AGG | - | chr3_4:23014844-23014863 | Msa0494720:CDS | 20.0% |
| !! | CAATTTCAAGGATAAAATTA+GGG | - | chr3_4:23014845-23014864 | Msa0494720:CDS | 20.0% |
| !!! | TGGGAATTTTTAGAGAATTA+TGG | + | chr3_4:23014506-23014525 | None:intergenic | 25.0% |
| !!! | GTTATTGTTGGTTTTGAATT+GGG | + | chr3_4:23014525-23014544 | None:intergenic | 25.0% |
| !!! | AGTTATTGTTGGTTTTGAAT+TGG | + | chr3_4:23014526-23014545 | None:intergenic | 25.0% |
| ! | TTCAATGTTGTAGTTATTGT+TGG | + | chr3_4:23014537-23014556 | None:intergenic | 25.0% |
| !!! | GATTTTGAGATTTTGTTTCT+TGG | + | chr3_4:23014592-23014611 | None:intergenic | 25.0% |
| ! | ATGAAAACTCGAATAAATTG+AGG | - | chr3_4:23014772-23014791 | Msa0494720:CDS | 25.0% |
| ! | TGAAAACTCGAATAAATTGA+GGG | - | chr3_4:23014773-23014792 | Msa0494720:CDS | 25.0% |
| ! | AATGGAAGTTTCAATCATAA+GGG | - | chr3_4:23014954-23014973 | Msa0494720:CDS | 25.0% |
| !!! | TTGTATTTGGTTTATGCTTT+TGG | - | chr3_4:23015140-23015159 | Msa0494720:CDS | 25.0% |
| ! | TATTGTTGAAGAATTTAGTG+TGG | - | chr3_4:23015163-23015182 | Msa0494720:CDS | 25.0% |
| !!! | TGGGAATTTTTAGAGAATTA+TGG | + | chr3_4:23014506-23014525 | None:intergenic | 25.0% |
| !!! | GTTATTGTTGGTTTTGAATT+GGG | + | chr3_4:23014525-23014544 | None:intergenic | 25.0% |
| !!! | AGTTATTGTTGGTTTTGAAT+TGG | + | chr3_4:23014526-23014545 | None:intergenic | 25.0% |
| ! | TTCAATGTTGTAGTTATTGT+TGG | + | chr3_4:23014537-23014556 | None:intergenic | 25.0% |
| !!! | GATTTTGAGATTTTGTTTCT+TGG | + | chr3_4:23014592-23014611 | None:intergenic | 25.0% |
| ! | ATGAAAACTCGAATAAATTG+AGG | - | chr3_4:23014772-23014791 | Msa0494720:CDS | 25.0% |
| ! | TGAAAACTCGAATAAATTGA+GGG | - | chr3_4:23014773-23014792 | Msa0494720:CDS | 25.0% |
| ! | AATGGAAGTTTCAATCATAA+GGG | - | chr3_4:23014954-23014973 | Msa0494720:CDS | 25.0% |
| !!! | TTGTATTTGGTTTATGCTTT+TGG | - | chr3_4:23015140-23015159 | Msa0494720:CDS | 25.0% |
| ! | TATTGTTGAAGAATTTAGTG+TGG | - | chr3_4:23015163-23015182 | Msa0494720:CDS | 25.0% |
| ! | TTTGTTTCTTGGAATCGATT+AGG | + | chr3_4:23014581-23014600 | None:intergenic | 30.0% |
| !!! | TGAAATTAGGGTTTTGGATT+GGG | + | chr3_4:23014742-23014761 | None:intergenic | 30.0% |
| !!! | TTGAAATTAGGGTTTTGGAT+TGG | + | chr3_4:23014743-23014762 | None:intergenic | 30.0% |
| ! | ATCGTTTGGGTTTGAAATTA+GGG | + | chr3_4:23014754-23014773 | None:intergenic | 30.0% |
| !! | TATTCGAGTTTTCATCGTTT+GGG | + | chr3_4:23014767-23014786 | None:intergenic | 30.0% |
| !! | TTATTCGAGTTTTCATCGTT+TGG | + | chr3_4:23014768-23014787 | None:intergenic | 30.0% |
| TTACGTTACCTACAATTTCA+AGG | - | chr3_4:23014833-23014852 | Msa0494720:CDS | 30.0% | |
| GAATGGAAGTTTCAATCATA+AGG | - | chr3_4:23014953-23014972 | Msa0494720:CDS | 30.0% | |
| ! | TTTGTTTCTTGGAATCGATT+AGG | + | chr3_4:23014581-23014600 | None:intergenic | 30.0% |
| !!! | TGAAATTAGGGTTTTGGATT+GGG | + | chr3_4:23014742-23014761 | None:intergenic | 30.0% |
| !!! | TTGAAATTAGGGTTTTGGAT+TGG | + | chr3_4:23014743-23014762 | None:intergenic | 30.0% |
| ! | ATCGTTTGGGTTTGAAATTA+GGG | + | chr3_4:23014754-23014773 | None:intergenic | 30.0% |
| !! | TATTCGAGTTTTCATCGTTT+GGG | + | chr3_4:23014767-23014786 | None:intergenic | 30.0% |
| !! | TTATTCGAGTTTTCATCGTT+TGG | + | chr3_4:23014768-23014787 | None:intergenic | 30.0% |
| TTACGTTACCTACAATTTCA+AGG | - | chr3_4:23014833-23014852 | Msa0494720:CDS | 30.0% | |
| GAATGGAAGTTTCAATCATA+AGG | - | chr3_4:23014953-23014972 | Msa0494720:CDS | 30.0% | |
| !! | TGGGTTTGAAATTAGGGTTT+TGG | + | chr3_4:23014748-23014767 | None:intergenic | 35.0% |
| ! | CATCGTTTGGGTTTGAAATT+AGG | + | chr3_4:23014755-23014774 | None:intergenic | 35.0% |
| GGTTTGTGTTATGTTGTTGA+GGG | - | chr3_4:23014995-23015014 | Msa0494720:CDS | 35.0% | |
| ! | GGTGATTGTGCGAATATTTT+GGG | - | chr3_4:23015104-23015123 | Msa0494720:CDS | 35.0% |
| ! | GTGATTGTGCGAATATTTTG+GGG | - | chr3_4:23015105-23015124 | Msa0494720:CDS | 35.0% |
| !! | TGATTGTGCGAATATTTTGG+GGG | - | chr3_4:23015106-23015125 | Msa0494720:CDS | 35.0% |
| !! | TGGGTTTGAAATTAGGGTTT+TGG | + | chr3_4:23014748-23014767 | None:intergenic | 35.0% |
| ! | CATCGTTTGGGTTTGAAATT+AGG | + | chr3_4:23014755-23014774 | None:intergenic | 35.0% |
| GGTTTGTGTTATGTTGTTGA+GGG | - | chr3_4:23014995-23015014 | Msa0494720:CDS | 35.0% | |
| ! | GGTGATTGTGCGAATATTTT+GGG | - | chr3_4:23015104-23015123 | Msa0494720:CDS | 35.0% |
| ! | GTGATTGTGCGAATATTTTG+GGG | - | chr3_4:23015105-23015124 | Msa0494720:CDS | 35.0% |
| !! | TGATTGTGCGAATATTTTGG+GGG | - | chr3_4:23015106-23015125 | Msa0494720:CDS | 35.0% |
| GTTCGAGTGATTGGAGAAAT+TGG | + | chr3_4:23014713-23014732 | None:intergenic | 40.0% | |
| TGTGAGAAGATGGATGGTAT+AGG | - | chr3_4:23014801-23014820 | Msa0494720:CDS | 40.0% | |
| GATGATGATTCTGCAATCAC+TGG | - | chr3_4:23014914-23014933 | Msa0494720:CDS | 40.0% | |
| ATGATTCTGCAATCACTGGA+AGG | - | chr3_4:23014918-23014937 | Msa0494720:CDS | 40.0% | |
| TGATTCTGCAATCACTGGAA+GGG | - | chr3_4:23014919-23014938 | Msa0494720:CDS | 40.0% | |
| ! | CAATCACTGGAAGGGTTTTA+TGG | - | chr3_4:23014927-23014946 | Msa0494720:CDS | 40.0% |
| !! | GAAGGGTTTTATGGAGTGAA+TGG | - | chr3_4:23014936-23014955 | Msa0494720:CDS | 40.0% |
| TCATAAGGGAATGAGAGAGA+CGG | - | chr3_4:23014968-23014987 | Msa0494720:CDS | 40.0% | |
| GGGTTTGTGTTATGTTGTTG+AGG | - | chr3_4:23014994-23015013 | Msa0494720:CDS | 40.0% | |
| !!! | TTGAGGGTTTTGAGTGTTTC+TGG | - | chr3_4:23015011-23015030 | Msa0494720:CDS | 40.0% |
| ! | GGGTGATTGTGCGAATATTT+TGG | - | chr3_4:23015103-23015122 | Msa0494720:CDS | 40.0% |
| !! | GGCATTGGGGTTTTTGTATT+TGG | - | chr3_4:23015127-23015146 | Msa0494720:CDS | 40.0% |
| TTTAGTGTGGATGAGCTTGT+TGG | - | chr3_4:23015176-23015195 | Msa0494720:CDS | 40.0% | |
| ! | TTAGTGTGGATGAGCTTGTT+GGG | - | chr3_4:23015177-23015196 | Msa0494720:CDS | 40.0% |
| !! | TTGTCGGGATATTGGTTTGA+CGG | - | chr3_4:23015241-23015260 | Msa0494720:CDS | 40.0% |
| GTTCGAGTGATTGGAGAAAT+TGG | + | chr3_4:23014713-23014732 | None:intergenic | 40.0% | |
| TGTGAGAAGATGGATGGTAT+AGG | - | chr3_4:23014801-23014820 | Msa0494720:CDS | 40.0% | |
| GATGATGATTCTGCAATCAC+TGG | - | chr3_4:23014914-23014933 | Msa0494720:CDS | 40.0% | |
| ATGATTCTGCAATCACTGGA+AGG | - | chr3_4:23014918-23014937 | Msa0494720:CDS | 40.0% | |
| TGATTCTGCAATCACTGGAA+GGG | - | chr3_4:23014919-23014938 | Msa0494720:CDS | 40.0% | |
| ! | CAATCACTGGAAGGGTTTTA+TGG | - | chr3_4:23014927-23014946 | Msa0494720:CDS | 40.0% |
| !! | GAAGGGTTTTATGGAGTGAA+TGG | - | chr3_4:23014936-23014955 | Msa0494720:CDS | 40.0% |
| TCATAAGGGAATGAGAGAGA+CGG | - | chr3_4:23014968-23014987 | Msa0494720:CDS | 40.0% | |
| GGGTTTGTGTTATGTTGTTG+AGG | - | chr3_4:23014994-23015013 | Msa0494720:CDS | 40.0% | |
| !!! | TTGAGGGTTTTGAGTGTTTC+TGG | - | chr3_4:23015011-23015030 | Msa0494720:CDS | 40.0% |
| ! | GGGTGATTGTGCGAATATTT+TGG | - | chr3_4:23015103-23015122 | Msa0494720:CDS | 40.0% |
| !! | GGCATTGGGGTTTTTGTATT+TGG | - | chr3_4:23015127-23015146 | Msa0494720:CDS | 40.0% |
| TTTAGTGTGGATGAGCTTGT+TGG | - | chr3_4:23015176-23015195 | Msa0494720:CDS | 40.0% | |
| ! | TTAGTGTGGATGAGCTTGTT+GGG | - | chr3_4:23015177-23015196 | Msa0494720:CDS | 40.0% |
| !! | TTGTCGGGATATTGGTTTGA+CGG | - | chr3_4:23015241-23015260 | Msa0494720:CDS | 40.0% |
| AATCTTCACTCCCTCTCTCA+TGG | - | chr3_4:23014634-23014653 | Msa0494720:CDS | 45.0% | |
| GTGTTGGATAGAGGTGAAGT+GGG | + | chr3_4:23014673-23014692 | None:intergenic | 45.0% | |
| ! | AGTGTTGGATAGAGGTGAAG+TGG | + | chr3_4:23014674-23014693 | None:intergenic | 45.0% |
| !! | AGTGAGAGAGTGTTGGATAG+AGG | + | chr3_4:23014682-23014701 | None:intergenic | 45.0% |
| ! | GGGATTGTTGTTCGAGTGAT+TGG | + | chr3_4:23014722-23014741 | None:intergenic | 45.0% |
| TACCATCCATCTTCTCACAC+AGG | + | chr3_4:23014800-23014819 | None:intergenic | 45.0% | |
| ! | TTGAAGTTTTCACCGGATGC+AGG | - | chr3_4:23014891-23014910 | Msa0494720:CDS | 45.0% |
| ! | TGAAGTTTTCACCGGATGCA+GGG | - | chr3_4:23014892-23014911 | Msa0494720:CDS | 45.0% |
| AGAATCATCATCCCTGCATC+CGG | + | chr3_4:23014906-23014925 | None:intergenic | 45.0% | |
| CATAAGGGAATGAGAGAGAC+GGG | - | chr3_4:23014969-23014988 | Msa0494720:CDS | 45.0% | |
| ATAAGGGAATGAGAGAGACG+GGG | - | chr3_4:23014970-23014989 | Msa0494720:CDS | 45.0% | |
| !! | GTTTCTGGTGTGAATGTGAG+TGG | - | chr3_4:23015026-23015045 | Msa0494720:CDS | 45.0% |
| TGGTGTGAATGTGAGTGGTA+AGG | - | chr3_4:23015031-23015050 | Msa0494720:CDS | 45.0% | |
| TGGTTGGAAAGTGAGGTTGA+CGG | - | chr3_4:23015082-23015101 | Msa0494720:CDS | 45.0% | |
| !! | TGCGAATATTTTGGGGGCAT+TGG | - | chr3_4:23015112-23015131 | Msa0494720:CDS | 45.0% |
| !!! | GCGAATATTTTGGGGGCATT+GGG | - | chr3_4:23015113-23015132 | Msa0494720:CDS | 45.0% |
| !!! | CGAATATTTTGGGGGCATTG+GGG | - | chr3_4:23015114-23015133 | Msa0494720:CDS | 45.0% |
| ! | GAGAGTTCATGCAGCTTTGT+CGG | - | chr3_4:23015225-23015244 | Msa0494720:CDS | 45.0% |
| ! | AGAGTTCATGCAGCTTTGTC+GGG | - | chr3_4:23015226-23015245 | Msa0494720:CDS | 45.0% |
| ! | ATGCAGCTTTGTCGGGATAT+TGG | - | chr3_4:23015233-23015252 | Msa0494720:CDS | 45.0% |
| ! | GGTTTGACGGATAGAATTCC+TGG | - | chr3_4:23015254-23015273 | Msa0494720:CDS | 45.0% |
| GACGGATAGAATTCCTGGTA+AGG | - | chr3_4:23015259-23015278 | Msa0494720:CDS | 45.0% | |
| ACTAACTCAACAGCCTTACC+AGG | + | chr3_4:23015275-23015294 | None:intergenic | 45.0% | |
| AATCTTCACTCCCTCTCTCA+TGG | - | chr3_4:23014634-23014653 | Msa0494720:CDS | 45.0% | |
| GTGTTGGATAGAGGTGAAGT+GGG | + | chr3_4:23014673-23014692 | None:intergenic | 45.0% | |
| ! | AGTGTTGGATAGAGGTGAAG+TGG | + | chr3_4:23014674-23014693 | None:intergenic | 45.0% |
| !! | AGTGAGAGAGTGTTGGATAG+AGG | + | chr3_4:23014682-23014701 | None:intergenic | 45.0% |
| ! | GGGATTGTTGTTCGAGTGAT+TGG | + | chr3_4:23014722-23014741 | None:intergenic | 45.0% |
| TACCATCCATCTTCTCACAC+AGG | + | chr3_4:23014800-23014819 | None:intergenic | 45.0% | |
| ! | TTGAAGTTTTCACCGGATGC+AGG | - | chr3_4:23014891-23014910 | Msa0494720:CDS | 45.0% |
| ! | TGAAGTTTTCACCGGATGCA+GGG | - | chr3_4:23014892-23014911 | Msa0494720:CDS | 45.0% |
| AGAATCATCATCCCTGCATC+CGG | + | chr3_4:23014906-23014925 | None:intergenic | 45.0% | |
| CATAAGGGAATGAGAGAGAC+GGG | - | chr3_4:23014969-23014988 | Msa0494720:CDS | 45.0% | |
| ATAAGGGAATGAGAGAGACG+GGG | - | chr3_4:23014970-23014989 | Msa0494720:CDS | 45.0% | |
| !! | GTTTCTGGTGTGAATGTGAG+TGG | - | chr3_4:23015026-23015045 | Msa0494720:CDS | 45.0% |
| TGGTGTGAATGTGAGTGGTA+AGG | - | chr3_4:23015031-23015050 | Msa0494720:CDS | 45.0% | |
| TGGTTGGAAAGTGAGGTTGA+CGG | - | chr3_4:23015082-23015101 | Msa0494720:CDS | 45.0% | |
| !! | TGCGAATATTTTGGGGGCAT+TGG | - | chr3_4:23015112-23015131 | Msa0494720:CDS | 45.0% |
| !!! | GCGAATATTTTGGGGGCATT+GGG | - | chr3_4:23015113-23015132 | Msa0494720:CDS | 45.0% |
| !!! | CGAATATTTTGGGGGCATTG+GGG | - | chr3_4:23015114-23015133 | Msa0494720:CDS | 45.0% |
| ! | GAGAGTTCATGCAGCTTTGT+CGG | - | chr3_4:23015225-23015244 | Msa0494720:CDS | 45.0% |
| ! | AGAGTTCATGCAGCTTTGTC+GGG | - | chr3_4:23015226-23015245 | Msa0494720:CDS | 45.0% |
| ! | ATGCAGCTTTGTCGGGATAT+TGG | - | chr3_4:23015233-23015252 | Msa0494720:CDS | 45.0% |
| ! | GGTTTGACGGATAGAATTCC+TGG | - | chr3_4:23015254-23015273 | Msa0494720:CDS | 45.0% |
| GACGGATAGAATTCCTGGTA+AGG | - | chr3_4:23015259-23015278 | Msa0494720:CDS | 45.0% | |
| ACTAACTCAACAGCCTTACC+AGG | + | chr3_4:23015275-23015294 | None:intergenic | 45.0% | |
| ! | CGAGTTGAAGCCATGAGAGA+GGG | + | chr3_4:23014647-23014666 | None:intergenic | 50.0% |
| !! | TCGAGTTGAAGCCATGAGAG+AGG | + | chr3_4:23014648-23014667 | None:intergenic | 50.0% |
| ! | AGCAGTGAGTGAGAGAGTGT+TGG | + | chr3_4:23014689-23014708 | None:intergenic | 50.0% |
| GTCCTGTGTGAGAAGATGGA+TGG | - | chr3_4:23014795-23014814 | Msa0494720:CDS | 50.0% | |
| !!! | CGAGGCGTTGAAGTTTTCAC+CGG | - | chr3_4:23014884-23014903 | Msa0494720:CDS | 50.0% |
| TGAATGTGAGTGGTAAGGCG+AGG | - | chr3_4:23015036-23015055 | Msa0494720:CDS | 50.0% | |
| GAATGTGAGTGGTAAGGCGA+GGG | - | chr3_4:23015037-23015056 | Msa0494720:CDS | 50.0% | |
| ! | TGGCGATTGGTTGGAAAGTG+AGG | - | chr3_4:23015075-23015094 | Msa0494720:CDS | 50.0% |
| GGTTGGAAAGTGAGGTTGAC+GGG | - | chr3_4:23015083-23015102 | Msa0494720:CDS | 50.0% | |
| !! | GTGGATGAGCTTGTTGGGTT+TGG | - | chr3_4:23015182-23015201 | Msa0494720:CDS | 50.0% |
| ! | CGAGTTGAAGCCATGAGAGA+GGG | + | chr3_4:23014647-23014666 | None:intergenic | 50.0% |
| !! | TCGAGTTGAAGCCATGAGAG+AGG | + | chr3_4:23014648-23014667 | None:intergenic | 50.0% |
| ! | AGCAGTGAGTGAGAGAGTGT+TGG | + | chr3_4:23014689-23014708 | None:intergenic | 50.0% |
| GTCCTGTGTGAGAAGATGGA+TGG | - | chr3_4:23014795-23014814 | Msa0494720:CDS | 50.0% | |
| !!! | CGAGGCGTTGAAGTTTTCAC+CGG | - | chr3_4:23014884-23014903 | Msa0494720:CDS | 50.0% |
| TGAATGTGAGTGGTAAGGCG+AGG | - | chr3_4:23015036-23015055 | Msa0494720:CDS | 50.0% | |
| GAATGTGAGTGGTAAGGCGA+GGG | - | chr3_4:23015037-23015056 | Msa0494720:CDS | 50.0% | |
| ! | TGGCGATTGGTTGGAAAGTG+AGG | - | chr3_4:23015075-23015094 | Msa0494720:CDS | 50.0% |
| GGTTGGAAAGTGAGGTTGAC+GGG | - | chr3_4:23015083-23015102 | Msa0494720:CDS | 50.0% | |
| !! | GTGGATGAGCTTGTTGGGTT+TGG | - | chr3_4:23015182-23015201 | Msa0494720:CDS | 50.0% |
| GAGGGTCCTGTGTGAGAAGA+TGG | - | chr3_4:23014791-23014810 | Msa0494720:CDS | 55.0% | |
| GGTTCAAGCAGAACTTCGCG+AGG | - | chr3_4:23014866-23014885 | Msa0494720:CDS | 55.0% | |
| !! | AGAGCGTTGAAGGTGGCGAT+TGG | - | chr3_4:23015062-23015081 | Msa0494720:CDS | 55.0% |
| CGTTGAAGGTGGCGATTGGT+TGG | - | chr3_4:23015066-23015085 | Msa0494720:CDS | 55.0% | |
| CTCTCCATTAACCGCAGCCA+CGG | + | chr3_4:23015210-23015229 | None:intergenic | 55.0% | |
| GAGGGTCCTGTGTGAGAAGA+TGG | - | chr3_4:23014791-23014810 | Msa0494720:CDS | 55.0% | |
| GGTTCAAGCAGAACTTCGCG+AGG | - | chr3_4:23014866-23014885 | Msa0494720:CDS | 55.0% | |
| !! | AGAGCGTTGAAGGTGGCGAT+TGG | - | chr3_4:23015062-23015081 | Msa0494720:CDS | 55.0% |
| CGTTGAAGGTGGCGATTGGT+TGG | - | chr3_4:23015066-23015085 | Msa0494720:CDS | 55.0% | |
| CTCTCCATTAACCGCAGCCA+CGG | + | chr3_4:23015210-23015229 | None:intergenic | 55.0% | |
| AGGGAATGAGAGAGACGGGG+AGG | - | chr3_4:23014973-23014992 | Msa0494720:CDS | 60.0% | |
| GGGAATGAGAGAGACGGGGA+GGG | - | chr3_4:23014974-23014993 | Msa0494720:CDS | 60.0% | |
| !! | GAGGGAGAGAGCGTTGAAGG+TGG | - | chr3_4:23015055-23015074 | Msa0494720:CDS | 60.0% |
| !! | GCTTGTTGGGTTTGGTGCCG+TGG | - | chr3_4:23015190-23015209 | Msa0494720:CDS | 60.0% |
| AGGGAATGAGAGAGACGGGG+AGG | - | chr3_4:23014973-23014992 | Msa0494720:CDS | 60.0% | |
| GGGAATGAGAGAGACGGGGA+GGG | - | chr3_4:23014974-23014993 | Msa0494720:CDS | 60.0% | |
| !! | GAGGGAGAGAGCGTTGAAGG+TGG | - | chr3_4:23015055-23015074 | Msa0494720:CDS | 60.0% |
| !! | GCTTGTTGGGTTTGGTGCCG+TGG | - | chr3_4:23015190-23015209 | Msa0494720:CDS | 60.0% |
| !! | GGCGAGGGAGAGAGCGTTGA+AGG | - | chr3_4:23015052-23015071 | Msa0494720:CDS | 65.0% |
| !! | TGGGTTTGGTGCCGTGGCTG+CGG | - | chr3_4:23015196-23015215 | Msa0494720:CDS | 65.0% |
| ! | GGTGCCGTGGCTGCGGTTAA+TGG | - | chr3_4:23015203-23015222 | Msa0494720:CDS | 65.0% |
| !! | GGCGAGGGAGAGAGCGTTGA+AGG | - | chr3_4:23015052-23015071 | Msa0494720:CDS | 65.0% |
| !! | TGGGTTTGGTGCCGTGGCTG+CGG | - | chr3_4:23015196-23015215 | Msa0494720:CDS | 65.0% |
| ! | GGTGCCGTGGCTGCGGTTAA+TGG | - | chr3_4:23015203-23015222 | Msa0494720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 23014489 | 23015298 | 23014489 | ID=Msa0494720;Name=Msa0494720 |
| chr3_4 | mRNA | 23014489 | 23015298 | 23014489 | ID=Msa0494720-mRNA-1;Parent=Msa0494720;Name=Msa0494720-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|269 |
| chr3_4 | exon | 23014489 | 23015298 | 23014489 | ID=Msa0494720-mRNA-1:exon:5710;Parent=Msa0494720-mRNA-1 |
| chr3_4 | CDS | 23014489 | 23015298 | 23014489 | ID=Msa0494720-mRNA-1:cds;Parent=Msa0494720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
