Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299360 | sp|P22180|PMA1_SOLLC | 90.517 | 116 | 11 | 0 | 5 | 120 | 3 | 118 | 5.37e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299360 | A0A072URD6 | 100.000 | 124 | 0 | 0 | 1 | 124 | 1 | 124 | 1.12e-76 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa1299360 | 0.808413 | 3.135269e-50 | -8.615850e-47 |
| Msa0002540 | Msa1299360 | 0.812946 | 3.282040e-51 | -8.615850e-47 |
| Msa0008340 | Msa1299360 | 0.806863 | 6.689990e-50 | -8.615850e-47 |
| Msa0008410 | Msa1299360 | 0.814378 | 1.588016e-51 | -8.615850e-47 |
| Msa0032370 | Msa1299360 | 0.817380 | 3.397974e-52 | -8.615850e-47 |
| Msa0047980 | Msa1299360 | 0.844694 | 6.450644e-59 | -8.615850e-47 |
| Msa0064350 | Msa1299360 | 0.802743 | 4.854611e-49 | -8.615850e-47 |
| Msa0069330 | Msa1299360 | 0.807166 | 5.773493e-50 | -8.615850e-47 |
| Msa0073670 | Msa1299360 | 0.854502 | 1.179331e-61 | -8.615850e-47 |
| Msa0092670 | Msa1299360 | -0.804399 | 2.201345e-49 | -8.615850e-47 |
| Msa0092690 | Msa1299360 | -0.803494 | 3.393914e-49 | -8.615850e-47 |
| Msa0092740 | Msa1299360 | -0.806410 | 8.338484e-50 | -8.615850e-47 |
| Msa0094010 | Msa1299360 | 0.803749 | 3.005419e-49 | -8.615850e-47 |
| Msa0094950 | Msa1299360 | 0.805778 | 1.132401e-49 | -8.615850e-47 |
| Msa0096670 | Msa1299360 | 0.814363 | 1.600945e-51 | -8.615850e-47 |
| Msa0098390 | Msa1299360 | -0.803968 | 2.705418e-49 | -8.615850e-47 |
| Msa0103180 | Msa1299360 | 0.808373 | 3.197693e-50 | -8.615850e-47 |
| Msa0114540 | Msa1299360 | -0.810945 | 8.956097e-51 | -8.615850e-47 |
| Msa0607290 | Msa1299360 | -0.803143 | 4.012030e-49 | -8.615850e-47 |
| Msa0607500 | Msa1299360 | 0.802464 | 5.542248e-49 | -8.615850e-47 |
| Msa0614490 | Msa1299360 | 0.819093 | 1.391427e-52 | -8.615850e-47 |
| Msa0625790 | Msa1299360 | 0.830856 | 2.320165e-55 | -8.615850e-47 |
| Msa0628890 | Msa1299360 | 0.805482 | 1.306547e-49 | -8.615850e-47 |
| Msa0638690 | Msa1299360 | 0.810508 | 1.113434e-50 | -8.615850e-47 |
| Msa0639120 | Msa1299360 | 0.858407 | 8.412824e-63 | -8.615850e-47 |
| Msa0642720 | Msa1299360 | 0.818180 | 2.242322e-52 | -8.615850e-47 |
| Msa0658390 | Msa1299360 | 0.806848 | 6.739652e-50 | -8.615850e-47 |
| Msa0661700 | Msa1299360 | -0.837842 | 4.094808e-57 | -8.615850e-47 |
| Msa0663120 | Msa1299360 | 0.809236 | 2.090877e-50 | -8.615850e-47 |
| Msa0663900 | Msa1299360 | 0.825858 | 3.726731e-54 | -8.615850e-47 |
| Msa0684500 | Msa1299360 | 0.800908 | 1.155486e-48 | -8.615850e-47 |
| Msa0687630 | Msa1299360 | 0.836835 | 7.412468e-57 | -8.615850e-47 |
| Msa0697690 | Msa1299360 | 0.828007 | 1.141911e-54 | -8.615850e-47 |
| Msa0699360 | Msa1299360 | 0.800605 | 1.332799e-48 | -8.615850e-47 |
| Msa0703110 | Msa1299360 | 0.805288 | 1.435173e-49 | -8.615850e-47 |
| Msa0707390 | Msa1299360 | 0.817526 | 3.151155e-52 | -8.615850e-47 |
| Msa0711490 | Msa1299360 | 0.815404 | 9.406999e-52 | -8.615850e-47 |
| Msa0712310 | Msa1299360 | 0.820406 | 6.974515e-53 | -8.615850e-47 |
| Msa0713460 | Msa1299360 | 0.828615 | 8.148728e-55 | -8.615850e-47 |
| Msa0713820 | Msa1299360 | 0.822022 | 2.958422e-53 | -8.615850e-47 |
| Msa0718740 | Msa1299360 | 0.803279 | 3.761057e-49 | -8.615850e-47 |
| Msa0730900 | Msa1299360 | 0.802850 | 4.612257e-49 | -8.615850e-47 |
| Msa0734960 | Msa1299360 | 0.823657 | 1.230796e-53 | -8.615850e-47 |
| Msa0735310 | Msa1299360 | 0.808390 | 3.171344e-50 | -8.615850e-47 |
| Msa0740040 | Msa1299360 | 0.812237 | 4.691512e-51 | -8.615850e-47 |
| Msa0743800 | Msa1299360 | 0.845372 | 4.231366e-59 | -8.615850e-47 |
| Msa0755340 | Msa1299360 | 0.806085 | 9.762582e-50 | -8.615850e-47 |
| Msa0787750 | Msa1299360 | 0.839370 | 1.650049e-57 | -8.615850e-47 |
| Msa0787810 | Msa1299360 | 0.820467 | 6.756128e-53 | -8.615850e-47 |
| Msa0793720 | Msa1299360 | 0.833035 | 6.721158e-56 | -8.615850e-47 |
| Msa0797750 | Msa1299360 | 0.854277 | 1.370050e-61 | -8.615850e-47 |
| Msa0798000 | Msa1299360 | -0.803785 | 2.953378e-49 | -8.615850e-47 |
| Msa0798720 | Msa1299360 | 0.805395 | 1.362704e-49 | -8.615850e-47 |
| Msa0814250 | Msa1299360 | 0.807209 | 5.651676e-50 | -8.615850e-47 |
| Msa0814320 | Msa1299360 | 0.800719 | 1.263236e-48 | -8.615850e-47 |
| Msa0824640 | Msa1299360 | 0.852751 | 3.758295e-61 | -8.615850e-47 |
| Msa0824910 | Msa1299360 | 0.822545 | 2.236811e-53 | -8.615850e-47 |
| Msa0830990 | Msa1299360 | 0.821137 | 4.736404e-53 | -8.615850e-47 |
| Msa0835280 | Msa1299360 | 0.816499 | 5.357625e-52 | -8.615850e-47 |
| Msa0137610 | Msa1299360 | -0.809788 | 1.591143e-50 | -8.615850e-47 |
| Msa0140300 | Msa1299360 | 0.811182 | 7.955285e-51 | -8.615850e-47 |
| Msa0143080 | Msa1299360 | 0.806391 | 8.414295e-50 | -8.615850e-47 |
| Msa0199690 | Msa1299360 | 0.800147 | 1.651850e-48 | -8.615850e-47 |
| Msa0224150 | Msa1299360 | 0.802988 | 4.320556e-49 | -8.615850e-47 |
| Msa0225180 | Msa1299360 | 0.803628 | 3.184239e-49 | -8.615850e-47 |
| Msa0236980 | Msa1299360 | 0.819658 | 1.034571e-52 | -8.615850e-47 |
| Msa1227690 | Msa1299360 | 0.831094 | 2.028089e-55 | -8.615850e-47 |
| Msa1228890 | Msa1299360 | 0.824675 | 7.100118e-54 | -8.615850e-47 |
| Msa1235630 | Msa1299360 | 0.838250 | 3.215982e-57 | -8.615850e-47 |
| Msa1237030 | Msa1299360 | 0.800571 | 1.353893e-48 | -8.615850e-47 |
| Msa1246530 | Msa1299360 | -0.809870 | 1.528370e-50 | -8.615850e-47 |
| Msa1254710 | Msa1299360 | 0.818624 | 1.778283e-52 | -8.615850e-47 |
| Msa1271580 | Msa1299360 | 0.801728 | 7.850274e-49 | -8.615850e-47 |
| Msa1274280 | Msa1299360 | 0.801870 | 7.343729e-49 | -8.615850e-47 |
| Msa1280560 | Msa1299360 | 0.819256 | 1.277885e-52 | -8.615850e-47 |
| Msa1281620 | Msa1299360 | 0.812199 | 4.780878e-51 | -8.615850e-47 |
| Msa1283990 | Msa1299360 | 0.827667 | 1.378727e-54 | -8.615850e-47 |
| Msa1294840 | Msa1299360 | 0.836058 | 1.168773e-56 | -8.615850e-47 |
| Msa1295630 | Msa1299360 | 0.802161 | 6.396850e-49 | -8.615850e-47 |
| Msa1296300 | Msa1299360 | 0.818301 | 2.105273e-52 | -8.615850e-47 |
| Msa1299360 | Msa1300860 | 0.800130 | 1.665255e-48 | -8.615850e-47 |
| Msa1299360 | Msa1307950 | 0.819170 | 1.336506e-52 | -8.615850e-47 |
| Msa1299360 | Msa1309130 | 0.821979 | 3.026801e-53 | -8.615850e-47 |
| Msa1299360 | Msa1310690 | 0.821039 | 4.991167e-53 | -8.615850e-47 |
| Msa1299360 | Msa1315870 | 0.807370 | 5.226259e-50 | -8.615850e-47 |
| Msa1299360 | Msa1318120 | 0.805698 | 1.177572e-49 | -8.615850e-47 |
| Msa1299360 | Msa1327490 | 0.827008 | 1.982820e-54 | -8.615850e-47 |
| Msa1299360 | Msa1327760 | 0.855896 | 4.638551e-62 | -8.615850e-47 |
| Msa1299360 | Msa1335940 | 0.807425 | 5.085649e-50 | -8.615850e-47 |
| Msa1299360 | Msa1337730 | 0.810876 | 9.267967e-51 | -8.615850e-47 |
| Msa1299360 | Msa1344850 | 0.856341 | 3.435392e-62 | -8.615850e-47 |
| Msa1299360 | Msa1348360 | 0.807406 | 5.134379e-50 | -8.615850e-47 |
| Msa1299360 | Msa1358430 | 0.824030 | 1.006449e-53 | -8.615850e-47 |
| Msa1299360 | Msa1362510 | 0.823998 | 1.024101e-53 | -8.615850e-47 |
| Msa1299360 | Msa1365150 | 0.852144 | 5.598807e-61 | -8.615850e-47 |
| Msa1299360 | Msa1365200 | 0.807843 | 4.146856e-50 | -8.615850e-47 |
| Msa1299360 | Msa1367880 | 0.845024 | 5.256669e-59 | -8.615850e-47 |
| Msa1299360 | Msa1372310 | 0.815271 | 1.006941e-51 | -8.615850e-47 |
| Msa1299360 | Msa1373330 | 0.805961 | 1.036398e-49 | -8.615850e-47 |
| Msa1299360 | Msa1373880 | 0.804837 | 1.783034e-49 | -8.615850e-47 |
| Msa1299360 | Msa1382410 | 0.812664 | 3.783745e-51 | -8.615850e-47 |
| Msa1299360 | Msa1387190 | 0.829203 | 5.869618e-55 | -8.615850e-47 |
| Msa1299360 | Msa1390310 | 0.807631 | 4.600181e-50 | -8.615850e-47 |
| Msa1299360 | Msa1393800 | 0.815044 | 1.131126e-51 | -8.615850e-47 |
| Msa1299360 | Msa1397050 | 0.826415 | 2.746820e-54 | -8.615850e-47 |
| Msa1299360 | Msa1397940 | 0.836033 | 1.185840e-56 | -8.615850e-47 |
| Msa1299360 | Msa1398860 | 0.819122 | 1.370462e-52 | -8.615850e-47 |
| Msa1299360 | Msa1404190 | 0.847114 | 1.418937e-59 | -8.615850e-47 |
| Msa1299360 | Msa1431040 | 0.823651 | 1.235012e-53 | -8.615850e-47 |
| Msa1299360 | Msa1435750 | 0.800659 | 1.299322e-48 | -8.615850e-47 |
| Msa1299360 | Msa1438450 | 0.814762 | 1.306000e-51 | -8.615850e-47 |
| Msa1299360 | Msa1438640 | 0.860944 | 1.450261e-63 | -8.615850e-47 |
| Msa1299360 | Msa1459180 | 0.809023 | 2.322807e-50 | -8.615850e-47 |
| Msa1299360 | Msa1463470 | 0.812466 | 4.179323e-51 | -8.615850e-47 |
| Msa1299360 | Msa1465080 | 0.812002 | 5.278367e-51 | -8.615850e-47 |
| Msa1299360 | Msa1466460 | 0.861016 | 1.379707e-63 | -8.615850e-47 |
| Msa0378980 | Msa1299360 | 0.806850 | 6.733730e-50 | -8.615850e-47 |
| Msa0392940 | Msa1299360 | 0.831246 | 1.861167e-55 | -8.615850e-47 |
| Msa0394400 | Msa1299360 | 0.811067 | 8.426977e-51 | -8.615850e-47 |
| Msa0413450 | Msa1299360 | 0.825419 | 4.736821e-54 | -8.615850e-47 |
| Msa0416400 | Msa1299360 | 0.826423 | 2.735843e-54 | -8.615850e-47 |
| Msa0426330 | Msa1299360 | 0.812503 | 4.103479e-51 | -8.615850e-47 |
| Msa0427220 | Msa1299360 | 0.815320 | 9.822418e-52 | -8.615850e-47 |
| Msa0431410 | Msa1299360 | 0.807633 | 4.594349e-50 | -8.615850e-47 |
| Msa0432070 | Msa1299360 | 0.830186 | 3.384584e-55 | -8.615850e-47 |
| Msa0439230 | Msa1299360 | 0.812580 | 3.946192e-51 | -8.615850e-47 |
| Msa0448750 | Msa1299360 | 0.827201 | 1.783040e-54 | -8.615850e-47 |
| Msa0449820 | Msa1299360 | 0.854935 | 8.837248e-62 | -8.615850e-47 |
| Msa0469910 | Msa1299360 | -0.837462 | 5.124997e-57 | -8.615850e-47 |
| Msa0986920 | Msa1299360 | 0.806233 | 9.086160e-50 | -8.615850e-47 |
| Msa0993530 | Msa1299360 | 0.835626 | 1.504230e-56 | -8.615850e-47 |
| Msa1008060 | Msa1299360 | -0.804041 | 2.612412e-49 | -8.615850e-47 |
| Msa1030930 | Msa1299360 | 0.801333 | 9.461451e-49 | -8.615850e-47 |
| Msa1032450 | Msa1299360 | 0.801357 | 9.353775e-49 | -8.615850e-47 |
| Msa1049510 | Msa1299360 | -0.827058 | 1.929723e-54 | -8.615850e-47 |
| Msa1073400 | Msa1299360 | 0.803126 | 4.045881e-49 | -8.615850e-47 |
| Msa1100720 | Msa1299360 | 0.811391 | 7.166333e-51 | -8.615850e-47 |
| Msa0239450 | Msa1299360 | 0.806793 | 6.923490e-50 | -8.615850e-47 |
| Msa0241800 | Msa1299360 | 0.817706 | 2.869869e-52 | -8.615850e-47 |
| Msa0259560 | Msa1299360 | 0.814432 | 1.545314e-51 | -8.615850e-47 |
| Msa0260240 | Msa1299360 | 0.809357 | 1.969053e-50 | -8.615850e-47 |
| Msa0260280 | Msa1299360 | 0.812974 | 3.235422e-51 | -8.615850e-47 |
| Msa0260830 | Msa1299360 | 0.801020 | 1.096528e-48 | -8.615850e-47 |
| Msa0267870 | Msa1299360 | 0.808441 | 3.091782e-50 | -8.615850e-47 |
| Msa0281360 | Msa1299360 | 0.855989 | 4.355302e-62 | -8.615850e-47 |
| Msa0291520 | Msa1299360 | 0.814322 | 1.634501e-51 | -8.615850e-47 |
| Msa0294390 | Msa1299360 | 0.808884 | 2.486860e-50 | -8.615850e-47 |
| Msa0304260 | Msa1299360 | 0.812450 | 4.214706e-51 | -8.615850e-47 |
| Msa0304300 | Msa1299360 | 0.816310 | 5.905608e-52 | -8.615850e-47 |
| Msa0310410 | Msa1299360 | 0.825458 | 4.637844e-54 | -8.615850e-47 |
| Msa0321170 | Msa1299360 | 0.818440 | 1.958259e-52 | -8.615850e-47 |
| Msa0321190 | Msa1299360 | 0.817264 | 3.609220e-52 | -8.615850e-47 |
| Msa0322590 | Msa1299360 | 0.819213 | 1.306830e-52 | -8.615850e-47 |
| Msa0328210 | Msa1299360 | 0.829047 | 6.404070e-55 | -8.615850e-47 |
| Msa1113590 | Msa1299360 | 0.800317 | 1.525009e-48 | -8.615850e-47 |
| Msa1126770 | Msa1299360 | 0.803224 | 3.860929e-49 | -8.615850e-47 |
| Msa1133630 | Msa1299360 | 0.808359 | 3.218898e-50 | -8.615850e-47 |
| Msa1148580 | Msa1299360 | 0.808159 | 3.551319e-50 | -8.615850e-47 |
| Msa1150970 | Msa1299360 | 0.802370 | 5.793823e-49 | -8.615850e-47 |
| Msa1171770 | Msa1299360 | -0.817383 | 3.393728e-52 | -8.615850e-47 |
| Msa1174100 | Msa1299360 | 0.824212 | 9.121920e-54 | -8.615850e-47 |
| Msa1175330 | Msa1299360 | 0.814780 | 1.294069e-51 | -8.615850e-47 |
| Msa1181170 | Msa1299360 | -0.800386 | 1.476750e-48 | -8.615850e-47 |
| Msa1182770 | Msa1299360 | 0.800458 | 1.427693e-48 | -8.615850e-47 |
| Msa1183660 | Msa1299360 | 0.803308 | 3.708543e-49 | -8.615850e-47 |
| Msa1184370 | Msa1299360 | 0.834010 | 3.836852e-56 | -8.615850e-47 |
| Msa1185130 | Msa1299360 | 0.822688 | 2.072477e-53 | -8.615850e-47 |
| Msa1185540 | Msa1299360 | 0.820890 | 5.400343e-53 | -8.615850e-47 |
| Msa1192850 | Msa1299360 | 0.828202 | 1.024809e-54 | -8.615850e-47 |
| Msa1193950 | Msa1299360 | -0.809056 | 2.284577e-50 | -8.615850e-47 |
| Msa1199290 | Msa1299360 | 0.814220 | 1.721014e-51 | -8.615850e-47 |
| Msa1201830 | Msa1299360 | 0.835727 | 1.418130e-56 | -8.615850e-47 |
| Msa1210400 | Msa1299360 | 0.810481 | 1.128322e-50 | -8.615850e-47 |
| Msa0484290 | Msa1299360 | 0.803282 | 3.755620e-49 | -8.615850e-47 |
| Msa0494720 | Msa1299360 | 0.808812 | 2.576452e-50 | -8.615850e-47 |
| Msa0495220 | Msa1299360 | 0.817759 | 2.791068e-52 | -8.615850e-47 |
| Msa0497420 | Msa1299360 | 0.822344 | 2.490970e-53 | -8.615850e-47 |
| Msa0505150 | Msa1299360 | 0.814750 | 1.314199e-51 | -8.615850e-47 |
| Msa0529320 | Msa1299360 | 0.821730 | 3.456815e-53 | -8.615850e-47 |
| Msa0546300 | Msa1299360 | 0.836955 | 6.909823e-57 | -8.615850e-47 |
| Msa0552810 | Msa1299360 | 0.831850 | 1.321046e-55 | -8.615850e-47 |
| Msa0560470 | Msa1299360 | 0.873800 | 1.110164e-67 | -8.615850e-47 |
| Msa0578090 | Msa1299360 | 0.802749 | 4.839566e-49 | -8.615850e-47 |
| Msa0579720 | Msa1299360 | 0.819922 | 9.006702e-53 | -8.615850e-47 |
| Msa0581070 | Msa1299360 | 0.810265 | 1.256092e-50 | -8.615850e-47 |
| Msa0585900 | Msa1299360 | 0.820049 | 8.421636e-53 | -8.615850e-47 |
| Msa0590680 | Msa1299360 | 0.800477 | 1.415210e-48 | -8.615850e-47 |
| Msa0591540 | Msa1299360 | 0.842755 | 2.130141e-58 | -8.615850e-47 |
| Msa0864010 | Msa1299360 | 0.854410 | 1.253924e-61 | -8.615850e-47 |
| Msa0869010 | Msa1299360 | 0.837061 | 6.489366e-57 | -8.615850e-47 |
| Msa0871890 | Msa1299360 | 0.825827 | 3.790444e-54 | -8.615850e-47 |
| Msa0872310 | Msa1299360 | 0.802944 | 4.410311e-49 | -8.615850e-47 |
| Msa0893810 | Msa1299360 | 0.804634 | 1.966247e-49 | -8.615850e-47 |
| Msa0900630 | Msa1299360 | 0.826380 | 2.799815e-54 | -8.615850e-47 |
| Msa0905550 | Msa1299360 | 0.800227 | 1.590921e-48 | -8.615850e-47 |
| Msa0922540 | Msa1299360 | 0.807009 | 6.231042e-50 | -8.615850e-47 |
| Msa0930780 | Msa1299360 | 0.825602 | 4.285412e-54 | -8.615850e-47 |
| Msa0931950 | Msa1299360 | 0.834810 | 2.416981e-56 | -8.615850e-47 |
| Msa0939790 | Msa1299360 | 0.802754 | 4.828940e-49 | -8.615850e-47 |
| Msa0942730 | Msa1299360 | 0.812187 | 4.808899e-51 | -8.615850e-47 |
| Msa0943170 | Msa1299360 | 0.803451 | 3.465055e-49 | -8.615850e-47 |
| Msa0957450 | Msa1299360 | -0.810833 | 9.467938e-51 | -8.615850e-47 |
| Msa0959010 | Msa1299360 | 0.813430 | 2.570190e-51 | -8.615850e-47 |
| Msa0959840 | Msa1299360 | 0.811259 | 7.655115e-51 | -8.615850e-47 |
| Msa0974810 | Msa1299360 | 0.803497 | 3.388886e-49 | -8.615850e-47 |
| Msa0976330 | Msa1299360 | 0.848038 | 7.906075e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299360 | MtrunA17_Chr4g0059961 | 100.000 | 124 | 0 | 0 | 1 | 124 | 1 | 124 | 2.16e-80 | 254 |
| Msa1299360 | MtrunA17_Chr4g0072131 | 74.359 | 117 | 30 | 0 | 4 | 120 | 3 | 119 | 1.42e-54 | 183 |
| Msa1299360 | MtrunA17_Chr6g0452721 | 82.759 | 116 | 20 | 0 | 5 | 120 | 3 | 118 | 1.93e-54 | 182 |
| Msa1299360 | MtrunA17_Chr2g0304941 | 75.893 | 112 | 27 | 0 | 9 | 120 | 6 | 117 | 5.19e-54 | 181 |
| Msa1299360 | MtrunA17_Chr4g0065481 | 78.182 | 110 | 24 | 0 | 11 | 120 | 8 | 117 | 8.24e-53 | 178 |
| Msa1299360 | MtrunA17_Chr7g0276541 | 68.000 | 125 | 37 | 1 | 1 | 122 | 1 | 125 | 3.64e-52 | 166 |
| Msa1299360 | MtrunA17_Chr1g0148031 | 78.571 | 112 | 24 | 0 | 9 | 120 | 5 | 116 | 4.39e-49 | 167 |
| Msa1299360 | MtrunA17_Chr3g0138931 | 78.571 | 112 | 24 | 0 | 9 | 120 | 5 | 116 | 5.24e-49 | 167 |
| Msa1299360 | MtrunA17_Chr2g0298031 | 77.679 | 112 | 25 | 0 | 9 | 120 | 10 | 121 | 1.80e-48 | 166 |
| Msa1299360 | MtrunA17_Chr2g0333721 | 76.786 | 112 | 26 | 0 | 9 | 120 | 3 | 114 | 4.88e-48 | 164 |
| Msa1299360 | MtrunA17_Chr8g0365021 | 76.577 | 111 | 26 | 0 | 10 | 120 | 76 | 186 | 1.12e-47 | 163 |
| Msa1299360 | MtrunA17_Chr8g0335291 | 71.311 | 122 | 29 | 1 | 5 | 120 | 3 | 124 | 5.72e-46 | 158 |
| Msa1299360 | MtrunA17_Chr1g0147981 | 79.208 | 101 | 21 | 0 | 20 | 120 | 33 | 133 | 3.49e-44 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299360 | AT5G62670.1 | 88.793 | 116 | 13 | 0 | 5 | 120 | 3 | 118 | 5.94e-60 | 198 |
| Msa1299360 | AT3G47950.1 | 86.325 | 117 | 16 | 0 | 4 | 120 | 6 | 122 | 4.49e-59 | 196 |
| Msa1299360 | AT3G47950.2 | 86.325 | 117 | 16 | 0 | 4 | 120 | 6 | 122 | 4.49e-59 | 196 |
| Msa1299360 | AT3G42640.1 | 77.273 | 110 | 25 | 0 | 11 | 120 | 8 | 117 | 4.99e-54 | 182 |
| Msa1299360 | AT2G07560.1 | 77.273 | 110 | 25 | 0 | 11 | 120 | 8 | 117 | 1.66e-53 | 180 |
| Msa1299360 | AT3G60330.4 | 69.912 | 113 | 34 | 0 | 8 | 120 | 5 | 117 | 3.43e-53 | 179 |
| Msa1299360 | AT3G60330.2 | 69.912 | 113 | 34 | 0 | 8 | 120 | 5 | 117 | 3.43e-53 | 179 |
| Msa1299360 | AT3G60330.3 | 69.912 | 113 | 34 | 0 | 8 | 120 | 5 | 117 | 3.43e-53 | 179 |
| Msa1299360 | AT3G60330.1 | 69.912 | 113 | 34 | 0 | 8 | 120 | 5 | 117 | 3.43e-53 | 179 |
| Msa1299360 | AT2G24520.2 | 70.435 | 115 | 34 | 0 | 6 | 120 | 45 | 159 | 1.04e-51 | 175 |
| Msa1299360 | AT4G30190.2 | 77.679 | 112 | 25 | 0 | 9 | 120 | 3 | 114 | 1.02e-48 | 167 |
| Msa1299360 | AT4G30190.1 | 77.679 | 112 | 25 | 0 | 9 | 120 | 3 | 114 | 1.03e-48 | 167 |
| Msa1299360 | AT5G57350.4 | 78.378 | 111 | 24 | 0 | 10 | 120 | 5 | 115 | 2.01e-48 | 166 |
| Msa1299360 | AT5G57350.2 | 78.378 | 111 | 24 | 0 | 10 | 120 | 5 | 115 | 2.01e-48 | 166 |
| Msa1299360 | AT5G57350.1 | 78.378 | 111 | 24 | 0 | 10 | 120 | 5 | 115 | 2.01e-48 | 166 |
| Msa1299360 | AT2G18960.1 | 76.577 | 111 | 26 | 0 | 10 | 120 | 4 | 114 | 2.82e-47 | 162 |
| Msa1299360 | AT2G24520.3 | 76.042 | 96 | 23 | 0 | 25 | 120 | 1 | 96 | 7.15e-47 | 161 |
| Msa1299360 | AT2G24520.1 | 76.042 | 96 | 23 | 0 | 25 | 120 | 1 | 96 | 7.15e-47 | 161 |
| Msa1299360 | AT1G80660.1 | 73.043 | 115 | 31 | 0 | 6 | 120 | 5 | 119 | 6.27e-46 | 159 |
| Msa1299360 | AT1G80660.4 | 73.043 | 115 | 31 | 0 | 6 | 120 | 5 | 119 | 6.98e-46 | 159 |
| Msa1299360 | AT1G80660.3 | 73.043 | 115 | 31 | 0 | 6 | 120 | 5 | 119 | 7.11e-46 | 159 |
| Msa1299360 | AT1G17260.1 | 63.158 | 114 | 39 | 1 | 7 | 120 | 12 | 122 | 3.02e-36 | 131 |
| Msa1299360 | AT4G11730.1 | 54.054 | 111 | 46 | 2 | 19 | 128 | 17 | 123 | 9.49e-32 | 118 |
| Msa1299360 | AT2G18960.3 | 86.000 | 50 | 7 | 0 | 71 | 120 | 1 | 50 | 4.58e-17 | 76.6 |
| Msa1299360 | AT2G18960.2 | 86.000 | 50 | 7 | 0 | 71 | 120 | 1 | 50 | 4.58e-17 | 76.6 |
Find 34 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCACAGCTTCTAAGGTTTC+AGG | 0.155460 | 8_3:-60510440 | None:intergenic |
| GAATCCTCTTTCTTGGGTTA+TGG | 0.227549 | 8_3:+60510861 | Msa1299360:CDS |
| TTATGTGGAATCCTCTTTCT+TGG | 0.252715 | 8_3:+60510854 | Msa1299360:CDS |
| TTCTTTGAGCACAGCTTCTA+AGG | 0.264492 | 8_3:-60510447 | None:intergenic |
| GCTCAAAGAAACTGTTGATT+TGG | 0.365222 | 8_3:+60510460 | Msa1299360:CDS |
| TATGTGGAATCCTCTTTCTT+GGG | 0.365741 | 8_3:+60510855 | Msa1299360:CDS |
| TATGGAGGCAGCTGCTATAA+TGG | 0.367835 | 8_3:+60510879 | Msa1299360:CDS |
| CCAACGAAATCTTGCCAATC+CGG | 0.404888 | 8_3:-60511093 | None:intergenic |
| TGAAATTTCTGGGATTTATG+TGG | 0.439540 | 8_3:+60510839 | Msa1299360:CDS |
| ATGGCTATTGCACTTGCAAA+TGG | 0.466383 | 8_3:+60510898 | Msa1299360:CDS |
| TATGTGAAGGTAAAAGCAAC+AGG | 0.472904 | 8_3:-60513169 | Msa1299370:CDS |
| GAAATTAGGAGGAGTACTAA+AGG | 0.491272 | 8_3:-60510295 | None:intergenic |
| TCCTCTTTCTTGGGTTATGG+AGG | 0.507258 | 8_3:+60510864 | Msa1299360:CDS |
| TGTAGGGGAAAGCTCCGGAT+TGG | 0.516305 | 8_3:+60511079 | Msa1299360:intron |
| AATTTGAGATGTAGCAGAGA+AGG | 0.517326 | 8_3:+60510621 | Msa1299360:CDS |
| TTCATTGAAGAGAACAATGC+CGG | 0.520229 | 8_3:+60511153 | Msa1299360:CDS |
| CCGGATTGGCAAGATTTCGT+TGG | 0.522762 | 8_3:+60511093 | Msa1299360:CDS |
| AAATTAGGAGGAGTACTAAA+GGG | 0.525993 | 8_3:-60510294 | None:intergenic |
| ATTTGAGATGTAGCAGAGAA+GGG | 0.538858 | 8_3:+60510622 | Msa1299360:CDS |
| GCCTCCATAACCCAAGAAAG+AGG | 0.541248 | 8_3:-60510865 | None:intergenic |
| TACTCCTCCTAATTTCTGAA+CGG | 0.542419 | 8_3:+60510302 | Msa1299360:five_prime_UTR |
| GCTATTGCACTTGCAAATGG+AGG | 0.571006 | 8_3:+60510901 | Msa1299360:CDS |
| CAGAGAAGGGCTTACAAGTG+AGG | 0.578809 | 8_3:+60510635 | Msa1299360:CDS |
| ATTTGTGTAGGGGAAAGCTC+CGG | 0.591331 | 8_3:+60511074 | Msa1299360:intron |
| TTGACACTAGAAAGACAAAG+AGG | 0.593541 | 8_3:+60510355 | Msa1299360:five_prime_UTR |
| GGAGAACATACCCATTGAAG+AGG | 0.598804 | 8_3:+60510590 | Msa1299360:intron |
| CAAGTGAGGCTGCTGAGCAG+AGG | 0.602746 | 8_3:+60510649 | Msa1299360:CDS |
| CTATTGCACTTGCAAATGGA+GGG | 0.604033 | 8_3:+60510902 | Msa1299360:CDS |
| TGGAAGTAAATATTATGTGA+AGG | 0.605535 | 8_3:-60513182 | Msa1299370:CDS |
| CACTAGAAAGACAAAGAGGG+TGG | 0.623437 | 8_3:+60510359 | Msa1299360:five_prime_UTR |
| AAAGCCGTTCAGAAATTAGG+AGG | 0.629862 | 8_3:-60510306 | None:intergenic |
| GAGGAGTACTAAAGGGTGCG+TGG | 0.630544 | 8_3:-60510287 | None:intergenic |
| TGACACTAGAAAGACAAAGA+GGG | 0.631463 | 8_3:+60510356 | Msa1299360:five_prime_UTR |
| TATTGCACTTGCAAATGGAG+GGG | 0.685618 | 8_3:+60510903 | Msa1299360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAGTAATAAATATTTAA+AGG | + | chr8_3:60512428-60512447 | Msa1299360:intron | 10.0% |
| !! | CTTATAAAATACAATTTAAT+TGG | - | chr8_3:60512914-60512933 | Msa1299370:intron | 10.0% |
| !! | TATAAAAATGTGTTAATAAG+TGG | + | chr8_3:60511647-60511666 | Msa1299360:intron | 15.0% |
| !!! | CTATTTTTGTAATCAAATTA+AGG | + | chr8_3:60511844-60511863 | Msa1299360:intron | 15.0% |
| !! | TTCTATTATCAAATAGAATT+TGG | + | chr8_3:60511959-60511978 | Msa1299360:intron | 15.0% |
| !! | TCTATTATCAAATAGAATTT+GGG | + | chr8_3:60511960-60511979 | Msa1299360:intron | 15.0% |
| !!! | CTATTTTCAATAAACTATTT+GGG | - | chr8_3:60511987-60512006 | Msa1299370:intron | 15.0% |
| !!! | ACTATTTTCAATAAACTATT+TGG | - | chr8_3:60511988-60512007 | Msa1299370:intron | 15.0% |
| !! | TTATTCAAATAAGATAAACA+TGG | + | chr8_3:60512008-60512027 | Msa1299360:intron | 15.0% |
| !!! | ACAAAATTATTTTTCGTTAA+TGG | + | chr8_3:60512372-60512391 | Msa1299360:intron | 15.0% |
| !! | TTACTTGAAATTAAGTTAAA+GGG | - | chr8_3:60512604-60512623 | Msa1299370:intron | 15.0% |
| !!! | GTAAAAAATTATTTCTGATA+CGG | + | chr8_3:60512957-60512976 | Msa1299360:intron | 15.0% |
| !! | AACCAGAAAGAAAAAAAAAA+TGG | + | chr8_3:60510403-60510422 | Msa1299360:exon | 20.0% |
| !! | AAACAATGATGATATAACAA+AGG | - | chr8_3:60510522-60510541 | None:intergenic | 20.0% |
| !!! | AAATTCAATCTTTTTCATGT+GGG | - | chr8_3:60510774-60510793 | None:intergenic | 20.0% |
| !!! | AAAATTCAATCTTTTTCATG+TGG | - | chr8_3:60510775-60510794 | None:intergenic | 20.0% |
| !!! | TGAAAAAGATTGAATTTTGA+TGG | + | chr8_3:60510777-60510796 | Msa1299360:intron | 20.0% |
| !!! | TTTGATGGTAAATTATTTTC+TGG | + | chr8_3:60510792-60510811 | Msa1299360:intron | 20.0% |
| !!! | TTGATGGTAAATTATTTTCT+GGG | + | chr8_3:60510793-60510812 | Msa1299360:intron | 20.0% |
| !!! | TTTGAAATTTGTGTTGAAAA+AGG | + | chr8_3:60511301-60511320 | Msa1299360:intron | 20.0% |
| !! | AAATGTTCATATGAATTAAC+AGG | - | chr8_3:60511541-60511560 | Msa1299370:intron | 20.0% |
| !! | TGATTTCTTCATAAAATGAT+TGG | - | chr8_3:60511569-60511588 | Msa1299370:intron | 20.0% |
| !! | TTTATGAAGAAATCAACAAA+TGG | + | chr8_3:60511574-60511593 | Msa1299360:intron | 20.0% |
| !! | TCTAATTTAACCAACAAAAT+CGG | - | chr8_3:60511695-60511714 | Msa1299370:intron | 20.0% |
| !! | CTCATATTATCTTAGAATTT+AGG | - | chr8_3:60511723-60511742 | Msa1299370:intron | 20.0% |
| !! | TTGTAATCAAATTAAGGTTA+AGG | + | chr8_3:60511850-60511869 | Msa1299360:intron | 20.0% |
| !! | TATATATCTGTGTGTTTATA+TGG | - | chr8_3:60511933-60511952 | Msa1299370:intron | 20.0% |
| !! | CTATTATCAAATAGAATTTG+GGG | + | chr8_3:60511961-60511980 | Msa1299360:intron | 20.0% |
| !!! | TTATTTTTCGTTAATGGTAT+TGG | + | chr8_3:60512378-60512397 | Msa1299360:intron | 20.0% |
| !! | GTTACTTGAAATTAAGTTAA+AGG | - | chr8_3:60512605-60512624 | Msa1299370:intron | 20.0% |
| !! | GACATAAAAAAAGATAATAG+AGG | - | chr8_3:60512633-60512652 | Msa1299370:intron | 20.0% |
| !!! | AATTTAATTGGCTTATTTGT+TGG | - | chr8_3:60512902-60512921 | Msa1299370:intron | 20.0% |
| !!! | AGCCATTTTTTTTTTCTTTC+TGG | - | chr8_3:60510408-60510427 | None:intergenic | 25.0% |
| ! | ATAACAAAGGAAGAAGATAA+AGG | - | chr8_3:60510509-60510528 | None:intergenic | 25.0% |
| !!! | TTTGTTTGTTTTGTGAATGT+AGG | + | chr8_3:60510569-60510588 | Msa1299360:intron | 25.0% |
| !!! | AGCAAGTTTTTGAAATTTCT+GGG | + | chr8_3:60510829-60510848 | Msa1299360:CDS | 25.0% |
| !!! | GTAGGTTGATTTTGATTATT+TGG | + | chr8_3:60511032-60511051 | Msa1299360:intron | 25.0% |
| ! | AATTTGTGTTGAAAAAGGTT+CGG | + | chr8_3:60511306-60511325 | Msa1299360:intron | 25.0% |
| ! | AAAAATGTGTTAATAAGTGG+TGG | + | chr8_3:60511650-60511669 | Msa1299360:intron | 25.0% |
| ! | ATGACGTAAAAAGAAAATGA+TGG | + | chr8_3:60512828-60512847 | Msa1299360:intron | 25.0% |
| ! | TGACGTAAAAAGAAAATGAT+GGG | + | chr8_3:60512829-60512848 | Msa1299360:intron | 25.0% |
| ! | TATATGTGGCTATAAAGAAA+AGG | - | chr8_3:60513120-60513139 | Msa1299370:CDS | 25.0% |
| ! | TATTGTTCAAGTGATATATG+TGG | - | chr8_3:60513134-60513153 | Msa1299370:CDS | 25.0% |
| !! | ACTTGAACAATATTTGTTAC+AGG | + | chr8_3:60513142-60513161 | Msa1299360:intron | 25.0% |
| !! | AAATTAGGAGGAGTACTAAA+GGG | - | chr8_3:60510297-60510316 | None:intergenic | 30.0% |
| !!! | TTTTTCTTTCTGGTTCTGTT+TGG | - | chr8_3:60510398-60510417 | None:intergenic | 30.0% |
| TTCTCAAAAACCTCTTCAAT+GGG | - | chr8_3:60510603-60510622 | None:intergenic | 30.0% | |
| ATTCTCAAAAACCTCTTCAA+TGG | - | chr8_3:60510604-60510623 | None:intergenic | 30.0% | |
| CTGTAGTGATGATTATGATA+AGG | + | chr8_3:60510748-60510767 | Msa1299360:intron | 30.0% | |
| ! | ATGGTAAATTATTTTCTGGG+TGG | + | chr8_3:60510796-60510815 | Msa1299360:intron | 30.0% |
| !!! | GAGCAAGTTTTTGAAATTTC+TGG | + | chr8_3:60510828-60510847 | Msa1299360:CDS | 30.0% |
| !! | TGAAATTTCTGGGATTTATG+TGG | + | chr8_3:60510839-60510858 | Msa1299360:CDS | 30.0% |
| ! | TGTTTTTCTTAGCAGCTTTT+TGG | + | chr8_3:60510932-60510951 | Msa1299360:intron | 30.0% |
| TCCTTCATATGTATGTTTGT+AGG | + | chr8_3:60511014-60511033 | Msa1299360:intron | 30.0% | |
| ACCTACAAACATACATATGA+AGG | - | chr8_3:60511018-60511037 | None:intergenic | 30.0% | |
| TGTTCCTTGAATATTTGTGT+AGG | + | chr8_3:60511062-60511081 | Msa1299360:intron | 30.0% | |
| GTTCCTTGAATATTTGTGTA+GGG | + | chr8_3:60511063-60511082 | Msa1299360:intron | 30.0% | |
| TTCCTTGAATATTTGTGTAG+GGG | + | chr8_3:60511064-60511083 | Msa1299360:intron | 30.0% | |
| AGTAAGAGTTCTACCAATTT+GGG | - | chr8_3:60511405-60511424 | Msa1299370:CDS | 30.0% | |
| TAGTAAGAGTTCTACCAATT+TGG | - | chr8_3:60511406-60511425 | Msa1299370:CDS | 30.0% | |
| ! | TTATAATAGCTGCTTTGTCA+AGG | + | chr8_3:60511513-60511532 | Msa1299360:intron | 30.0% |
| ATACATATTTGTGCAAGTGT+TGG | - | chr8_3:60512076-60512095 | Msa1299370:intron | 30.0% | |
| ACACTTGCACAAATATGTAT+CGG | + | chr8_3:60512076-60512095 | Msa1299360:intron | 30.0% | |
| !! | TTATTTAGTTCTCTTGACGT+GGG | - | chr8_3:60512236-60512255 | Msa1299370:intron | 30.0% |
| !! | TTTATTTAGTTCTCTTGACG+TGG | - | chr8_3:60512237-60512256 | Msa1299370:intron | 30.0% |
| ACGTCAAGAGAACTAAATAA+AGG | + | chr8_3:60512236-60512255 | Msa1299360:intron | 30.0% | |
| CTTGAAAGTTCATATGCAAA+CGG | + | chr8_3:60512790-60512809 | Msa1299360:intron | 30.0% | |
| !! | TCATATGCAAACGGATTAAA+AGG | + | chr8_3:60512799-60512818 | Msa1299360:intron | 30.0% |
| ! | AAATACTCGACATTGATTAG+TGG | + | chr8_3:60512986-60513005 | Msa1299360:intron | 30.0% |
| !! | GAAATTAGGAGGAGTACTAA+AGG | - | chr8_3:60510298-60510317 | None:intergenic | 35.0% |
| TACTCCTCCTAATTTCTGAA+CGG | + | chr8_3:60510302-60510321 | Msa1299360:five_prime_UTR | 35.0% | |
| CAAAAAGCCGTTCAGAAATT+AGG | - | chr8_3:60510312-60510331 | None:intergenic | 35.0% | |
| TTGACACTAGAAAGACAAAG+AGG | + | chr8_3:60510355-60510374 | Msa1299360:five_prime_UTR | 35.0% | |
| TGACACTAGAAAGACAAAGA+GGG | + | chr8_3:60510356-60510375 | Msa1299360:five_prime_UTR | 35.0% | |
| ! | GCTCAAAGAAACTGTTGATT+TGG | + | chr8_3:60510460-60510479 | Msa1299360:CDS | 35.0% |
| ! | AATTTGAGATGTAGCAGAGA+AGG | + | chr8_3:60510621-60510640 | Msa1299360:CDS | 35.0% |
| ! | ATTTGAGATGTAGCAGAGAA+GGG | + | chr8_3:60510622-60510641 | Msa1299360:CDS | 35.0% |
| ! | TTATTTTCTGGGTGGTTTTC+AGG | + | chr8_3:60510804-60510823 | Msa1299360:intron | 35.0% |
| TTATGTGGAATCCTCTTTCT+TGG | + | chr8_3:60510854-60510873 | Msa1299360:CDS | 35.0% | |
| TATGTGGAATCCTCTTTCTT+GGG | + | chr8_3:60510855-60510874 | Msa1299360:CDS | 35.0% | |
| TTCCCCTACACAAATATTCA+AGG | - | chr8_3:60511069-60511088 | None:intergenic | 35.0% | |
| TTCATTGAAGAGAACAATGC+CGG | + | chr8_3:60511153-60511172 | Msa1299360:CDS | 35.0% | |
| TCTTTGCAGTATACAACAAG+TGG | - | chr8_3:60511444-60511463 | Msa1299370:CDS | 35.0% | |
| TGTATACTGCAAAGATACCA+TGG | + | chr8_3:60511449-60511468 | Msa1299360:intron | 35.0% | |
| CAAGACAAAATAAACCCTGA+CGG | - | chr8_3:60511488-60511507 | Msa1299370:CDS | 35.0% | |
| !!! | TCAGGGTTTATTTTGTCTTG+TGG | + | chr8_3:60511488-60511507 | Msa1299360:intron | 35.0% |
| !!! | CAGGGTTTATTTTGTCTTGT+GGG | + | chr8_3:60511489-60511508 | Msa1299360:intron | 35.0% |
| !!! | AGGGTTTATTTTGTCTTGTG+GGG | + | chr8_3:60511490-60511509 | Msa1299360:intron | 35.0% |
| !! | ACTATACAAGCCGATTTTGT+TGG | + | chr8_3:60511682-60511701 | Msa1299360:intron | 35.0% |
| !! | ATATTTGTGCAAGTGTTGGT+TGG | - | chr8_3:60512072-60512091 | Msa1299370:intron | 35.0% |
| ! | TTGCACAAATATGTATCGGT+TGG | + | chr8_3:60512080-60512099 | Msa1299360:intron | 35.0% |
| !! | TCGGTTGGAATTTTAAGTGT+CGG | + | chr8_3:60512095-60512114 | Msa1299360:intron | 35.0% |
| !!! | GAATTTTAAGTGTCGGTAGT+TGG | + | chr8_3:60512102-60512121 | Msa1299360:intron | 35.0% |
| ! | CCTTTCTTATAAGTCGCTTT+GGG | - | chr8_3:60512525-60512544 | Msa1299370:intron | 35.0% |
| TCCTTTCTTATAAGTCGCTT+TGG | - | chr8_3:60512526-60512545 | Msa1299370:intron | 35.0% | |
| AAAGCGACTTATAAGAAAGG+AGG | + | chr8_3:60512525-60512544 | Msa1299360:intron | 35.0% | |
| AAGCGACTTATAAGAAAGGA+GGG | + | chr8_3:60512526-60512545 | Msa1299360:intron | 35.0% | |
| ! | AAGGGCGACAAAAGTAATTT+TGG | - | chr8_3:60512586-60512605 | Msa1299370:intron | 35.0% |
| GTATCTTGTCTTTATCCTGT+TGG | + | chr8_3:60512855-60512874 | Msa1299360:intron | 35.0% | |
| GAAACTCAATCTACAAGAAG+AGG | - | chr8_3:60513098-60513117 | Msa1299370:CDS | 35.0% | |
| TATGTGAAGGTAAAAGCAAC+AGG | - | chr8_3:60513172-60513191 | Msa1299370:CDS | 35.0% | |
| AAAGCCGTTCAGAAATTAGG+AGG | - | chr8_3:60510309-60510328 | None:intergenic | 40.0% | |
| TTCTTTGAGCACAGCTTCTA+AGG | - | chr8_3:60510450-60510469 | None:intergenic | 40.0% | |
| ! | GAGCAGAGGCTAACAATTTT+TGG | + | chr8_3:60510663-60510682 | Msa1299360:CDS | 40.0% |
| GAATCCTCTTTCTTGGGTTA+TGG | + | chr8_3:60510861-60510880 | Msa1299360:CDS | 40.0% | |
| ATGGCTATTGCACTTGCAAA+TGG | + | chr8_3:60510898-60510917 | Msa1299360:CDS | 40.0% | |
| CTATTGCACTTGCAAATGGA+GGG | + | chr8_3:60510902-60510921 | Msa1299360:CDS | 40.0% | |
| TATTGCACTTGCAAATGGAG+GGG | + | chr8_3:60510903-60510922 | Msa1299360:CDS | 40.0% | |
| AGTCTTCCAAGCACTTCAAT+CGG | - | chr8_3:60511333-60511352 | Msa1299370:CDS | 40.0% | |
| AGACTAACACTGTGTTCTGT+TGG | + | chr8_3:60511348-60511367 | Msa1299360:intron | 40.0% | |
| AGTATGCCTGAAACCCAAAT+TGG | + | chr8_3:60511389-60511408 | Msa1299360:intron | 40.0% | |
| ! | GTTCTACCAATTTGGGTTTC+AGG | - | chr8_3:60511398-60511417 | Msa1299370:CDS | 40.0% |
| !! | CAAAATCGGCTTGTATAGTG+AGG | - | chr8_3:60511681-60511700 | Msa1299370:intron | 40.0% |
| AACTCATTCGACGAACCAAT+TGG | + | chr8_3:60511754-60511773 | Msa1299360:intron | 40.0% | |
| CCCAAAGCGACTTATAAGAA+AGG | + | chr8_3:60512522-60512541 | Msa1299360:intron | 40.0% | |
| ATTAGTGGTTACCTGAACTG+AGG | + | chr8_3:60513001-60513020 | Msa1299360:intron | 40.0% | |
| TTTCTCATACACCTCAGTTC+AGG | - | chr8_3:60513015-60513034 | Msa1299370:CDS | 40.0% | |
| !! | AGCTTGGTGTTGATAGAGTA+AGG | + | chr8_3:60513034-60513053 | Msa1299360:intron | 40.0% |
| CACTAGAAAGACAAAGAGGG+TGG | + | chr8_3:60510359-60510378 | Msa1299360:five_prime_UTR | 45.0% | |
| !! | AGCACAGCTTCTAAGGTTTC+AGG | - | chr8_3:60510443-60510462 | None:intergenic | 45.0% |
| GGAGAACATACCCATTGAAG+AGG | + | chr8_3:60510590-60510609 | Msa1299360:intron | 45.0% | |
| TCCTCTTTCTTGGGTTATGG+AGG | + | chr8_3:60510864-60510883 | Msa1299360:CDS | 45.0% | |
| TATGGAGGCAGCTGCTATAA+TGG | + | chr8_3:60510879-60510898 | Msa1299360:CDS | 45.0% | |
| GCTATTGCACTTGCAAATGG+AGG | + | chr8_3:60510901-60510920 | Msa1299360:CDS | 45.0% | |
| GTGTATCTGTGAGTGTGTGT+TGG | + | chr8_3:60510966-60510985 | Msa1299360:intron | 45.0% | |
| ATTTGTGTAGGGGAAAGCTC+CGG | + | chr8_3:60511074-60511093 | Msa1299360:intron | 45.0% | |
| CCAACGAAATCTTGCCAATC+CGG | - | chr8_3:60511096-60511115 | None:intergenic | 45.0% | |
| ACGACTAAAGCGTGACCAAT+TGG | - | chr8_3:60511772-60511791 | Msa1299370:intron | 45.0% | |
| CTGAGGTGTATGAGAAAGCT+TGG | + | chr8_3:60513018-60513037 | Msa1299360:intron | 45.0% | |
| !!! | ATAATTTTTTACTATTTAAT+TGG | - | chr8_3:60512949-60512968 | Msa1299370:intron | 5.0% |
| CAGAGAAGGGCTTACAAGTG+AGG | + | chr8_3:60510635-60510654 | Msa1299360:CDS | 50.0% | |
| GCCTCCATAACCCAAGAAAG+AGG | - | chr8_3:60510868-60510887 | None:intergenic | 50.0% | |
| !! | CCGGATTGGCAAGATTTCGT+TGG | + | chr8_3:60511093-60511112 | Msa1299360:CDS | 50.0% |
| ! | TTCGGTCCGATTGAAGTGCT+TGG | + | chr8_3:60511324-60511343 | Msa1299360:intron | 50.0% |
| ACGGTTCTGCATCTGATCCA+TGG | - | chr8_3:60511469-60511488 | Msa1299370:CDS | 50.0% | |
| GATCAGATGCAGAACCGTCA+GGG | + | chr8_3:60511471-60511490 | Msa1299360:intron | 50.0% | |
| TAGAAACTGCGAGCACCAAC+AGG | - | chr8_3:60512873-60512892 | Msa1299370:intron | 50.0% | |
| !! | GAGGAGTACTAAAGGGTGCG+TGG | - | chr8_3:60510290-60510309 | None:intergenic | 55.0% |
| TGTAGGGGAAAGCTCCGGAT+TGG | + | chr8_3:60511079-60511098 | Msa1299360:intron | 55.0% | |
| GGATCAGATGCAGAACCGTC+AGG | + | chr8_3:60511470-60511489 | Msa1299360:intron | 55.0% | |
| CAAGTGAGGCTGCTGAGCAG+AGG | + | chr8_3:60510649-60510668 | Msa1299360:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 60510280 | 60513192 | 60510280 | ID=Msa1299360;Name=Msa1299360 |
| chr8_3 | mRNA | 60510280 | 60513192 | 60510280 | ID=Msa1299360-mRNA-1;Parent=Msa1299360;Name=Msa1299360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=142|0.75|0.6|0.8|1|1|5|0|132 |
| chr8_3 | exon | 60510280 | 60510481 | 60510280 | ID=Msa1299360-mRNA-1:exon:17674;Parent=Msa1299360-mRNA-1 |
| chr8_3 | exon | 60510591 | 60510710 | 60510591 | ID=Msa1299360-mRNA-1:exon:17675;Parent=Msa1299360-mRNA-1 |
| chr8_3 | exon | 60510826 | 60510924 | 60510826 | ID=Msa1299360-mRNA-1:exon:17676;Parent=Msa1299360-mRNA-1 |
| chr8_3 | exon | 60511084 | 60511174 | 60511084 | ID=Msa1299360-mRNA-1:exon:17677;Parent=Msa1299360-mRNA-1 |
| chr8_3 | exon | 60513164 | 60513192 | 60513164 | ID=Msa1299360-mRNA-1:exon:17678;Parent=Msa1299360-mRNA-1 |
| chr8_3 | five_prime_UTR | 60510280 | 60510421 | 60510280 | ID=Msa1299360-mRNA-1:five_prime_utr;Parent=Msa1299360-mRNA-1 |
| chr8_3 | CDS | 60510422 | 60510481 | 60510422 | ID=Msa1299360-mRNA-1:cds;Parent=Msa1299360-mRNA-1 |
| chr8_3 | CDS | 60510591 | 60510710 | 60510591 | ID=Msa1299360-mRNA-1:cds;Parent=Msa1299360-mRNA-1 |
| chr8_3 | CDS | 60510826 | 60510924 | 60510826 | ID=Msa1299360-mRNA-1:cds;Parent=Msa1299360-mRNA-1 |
| chr8_3 | CDS | 60511084 | 60511174 | 60511084 | ID=Msa1299360-mRNA-1:cds;Parent=Msa1299360-mRNA-1 |
| chr8_3 | CDS | 60513164 | 60513192 | 60513164 | ID=Msa1299360-mRNA-1:cds;Parent=Msa1299360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
