AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0496200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0496200 MtrunA17_Chr6g0484111 91.075 493 39 1 1 488 1 493 0.0 934
Msa0496200 MtrunA17_Chr6g0484131 90.669 493 33 2 1 488 1 485 0.0 920
Msa0496200 MtrunA17_Chr6g0484121 90.061 493 36 2 1 488 1 485 0.0 912
Msa0496200 MtrunA17_Chr8g0391221 63.617 481 159 10 1 473 1 473 0.0 601
Msa0496200 MtrunA17_Chr8g0391211 62.702 496 164 15 1 486 72 556 0.0 580
Msa0496200 MtrunA17_Chr4g0072691 47.165 388 192 7 27 409 3 382 8.52e-117 356
Msa0496200 MtrunA17_Chr4g0048161 42.073 492 254 13 2 487 13 479 1.24e-116 356
Msa0496200 MtrunA17_Chr2g0281171 46.565 393 198 7 1 387 12 398 4.28e-115 352
Msa0496200 MtrunA17_Chr2g0304831 42.534 442 230 8 4 437 11 436 2.52e-111 341
Msa0496200 MtrunA17_Chr4g0059411 47.368 304 152 7 14 315 9 306 1.22e-80 260
Msa0496200 MtrunA17_Chr7g0271691 34.857 350 209 9 47 390 44 380 6.40e-51 181
Msa0496200 MtrunA17_Chr7g0271671 31.910 398 243 13 1 378 1 390 2.87e-46 169
Msa0496200 MtrunA17_Chr7g0271681 35.254 295 178 7 89 376 10 298 3.73e-43 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0496200 AT1G73805.1 48.750 480 209 12 1 473 1 450 6.82e-145 423
Msa0496200 AT5G57580.1 41.075 521 248 14 9 482 17 525 2.12e-116 357
Msa0496200 AT4G25800.1 47.013 385 189 7 4 382 2 377 1.12e-112 345
Msa0496200 AT4G25800.2 47.013 385 189 7 4 382 2 377 1.12e-112 345
Msa0496200 AT2G18750.3 40.299 469 258 10 4 457 16 477 1.51e-109 338
Msa0496200 AT2G18750.2 40.299 469 258 10 4 457 16 477 1.51e-109 338
Msa0496200 AT2G18750.1 40.299 469 258 10 4 457 16 477 1.51e-109 338
Msa0496200 AT2G24300.2 43.264 386 211 6 4 384 3 385 2.22e-97 306
Msa0496200 AT2G24300.3 43.264 386 211 6 4 384 7 389 2.48e-97 306
Msa0496200 AT4G31000.1 41.412 425 227 11 11 422 13 428 3.09e-96 302
Msa0496200 AT5G62570.4 39.410 373 202 10 1 363 1 359 2.47e-84 265
Msa0496200 AT5G62570.1 38.363 391 217 10 1 381 1 377 3.77e-84 269
Msa0496200 AT2G24300.1 43.713 334 181 5 55 384 8 338 7.38e-84 269
Msa0496200 AT5G62570.2 39.227 362 199 8 29 381 13 362 4.84e-82 263
Msa0496200 AT4G31000.2 37.150 428 220 15 11 422 13 407 1.72e-71 236
Msa0496200 AT5G26920.3 35.556 360 212 8 26 381 24 367 1.48e-68 226
Msa0496200 AT5G62570.3 41.528 301 157 8 1 295 1 288 2.89e-68 221
Msa0496200 AT5G26920.1 35.556 360 212 8 26 381 24 367 1.05e-67 227
Msa0496200 AT5G26920.2 35.278 360 205 9 26 381 24 359 2.82e-64 218

Find 147 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTTGACACATTATTTA+TGG 0.132750 3_4:-26583393 None:intergenic
TAAAATTTGTAGGAATTTAA+TGG 0.161623 3_4:-26583329 None:intergenic
TCAACAAGACTTATGCTTAT+AGG 0.197679 3_4:-26579757 None:intergenic
ACTACAATCTCTAGCTTTAT+AGG 0.214346 3_4:-26579823 None:intergenic
GGATAAGGAGCAGGAAGTTT+AGG 0.223342 3_4:+26580022 Msa0496200:CDS
TTCAACAGCTCAGATTTATT+TGG 0.233641 3_4:+26583214 Msa0496200:three_prime_UTR
GAAGACTTGTTGGAACAATT+TGG 0.268874 3_4:-26579795 None:intergenic
GGGAAGAGACCATTACTTTC+TGG 0.273521 3_4:+26579928 Msa0496200:CDS
AACTTTAGATGTACTAATTT+CGG 0.278358 3_4:+26583132 Msa0496200:exon
GCTTTAATTAATTTGCATAT+TGG 0.279068 3_4:-26581948 None:intergenic
GACTTTGACACATTATTTAT+GGG 0.281076 3_4:-26583392 None:intergenic
AGTATCATACCTGTGAAAAT+TGG 0.282063 3_4:-26579155 None:intergenic
ACATCAAAACCTTAACTCTT+TGG 0.284205 3_4:+26577690 Msa0496200:five_prime_UTR
TTGCTTACTATAAAATTTGT+AGG 0.293623 3_4:-26583339 None:intergenic
TTGGAGAAGCATACACAAAA+TGG 0.297191 3_4:+26582178 Msa0496200:CDS
TTATAGTAAGCAAATATAAT+AGG 0.302924 3_4:+26583349 Msa0496200:three_prime_UTR
ACTGTTGCTGGATGATTGTT+TGG 0.310236 3_4:-26582876 None:intergenic
GCATTGAAGATAAACAAATT+AGG 0.310253 3_4:+26583469 Msa0496200:three_prime_UTR
TATGTTGTTGCTACTGTTGC+TGG 0.313492 3_4:-26582888 None:intergenic
TGCATTTGGTGTTGTGGTAT+AGG 0.314012 3_4:-26583015 None:intergenic
GTAGAGCTATATAGACAAAT+TGG 0.314437 3_4:+26582155 Msa0496200:intron
AATGCAAATGGATTTCCTTT+TGG 0.323071 3_4:+26583032 Msa0496200:CDS
TATCATCAGAATCAATATTA+TGG 0.324552 3_4:+26582909 Msa0496200:CDS
CTAGAGATTGTAGTGCTTGA+TGG 0.330811 3_4:+26579832 Msa0496200:CDS
AAAAGAAGTTGCTTTGATCT+TGG 0.331441 3_4:+26583423 Msa0496200:three_prime_UTR
TTGTAGGAATTTAATGGAAT+AGG 0.340830 3_4:-26583323 None:intergenic
TATATTGTACCTTATTCATT+TGG 0.342595 3_4:-26582013 None:intergenic
GATAAGGAGCAGGAAGTTTA+GGG 0.346752 3_4:+26580023 Msa0496200:CDS
AAAGAAGTTGCTTTGATCTT+GGG 0.359234 3_4:+26583424 Msa0496200:three_prime_UTR
GAATTTAATGGAATAGGATT+AGG 0.362207 3_4:-26583317 None:intergenic
GGTCTCATTCGTTTGTCGTT+TGG 0.363334 3_4:-26577787 None:intergenic
GTACTTGAGCCAAATGAATA+AGG 0.364385 3_4:+26582004 Msa0496200:CDS
AAAGGAAATCCATTTGCATT+TGG 0.365748 3_4:-26583029 None:intergenic
GAAGAGGTGGATAGAGCAAT+TGG 0.372285 3_4:+26579026 Msa0496200:CDS
GACTGAGGCATTTGTTGTTA+AGG 0.376185 3_4:+26580101 Msa0496200:CDS
ATATATACCTCTCTTAGCTT+TGG 0.385685 3_4:-26581289 None:intergenic
CTACAATCTCTAGCTTTATA+GGG 0.387802 3_4:-26579822 None:intergenic
GCTTTCCACCTTCCATCAAT+AGG 0.389606 3_4:+26579054 Msa0496200:CDS
ATAGGGTAAGGAAGACTTGT+TGG 0.390458 3_4:-26579805 None:intergenic
CTGTCCCTAGGGACATTAAT+GGG 0.391628 3_4:+26583099 Msa0496200:CDS
ATAATGTGTCAAAGTCAAAA+TGG 0.394518 3_4:+26583399 Msa0496200:three_prime_UTR
TCTGTCCCTAGGGACATTAA+TGG 0.395267 3_4:+26583098 Msa0496200:CDS
GTTTGATCTCAGCAATAGAT+TGG 0.399968 3_4:+26583249 Msa0496200:three_prime_UTR
GTTGTTGATCCCTTGGTGCT+TGG 0.401027 3_4:-26579094 None:intergenic
GAAGTTTAGGGTTGCAGTTA+TGG 0.408854 3_4:+26580035 Msa0496200:CDS
TAATGAAGGTGACCTATTGA+TGG 0.408912 3_4:-26579066 None:intergenic
AGAGGTGGAATTGCACCAAT+TGG 0.409164 3_4:+26579970 Msa0496200:CDS
CGTCCTGCTGTAATAGATCT+TGG 0.410560 3_4:-26583283 None:intergenic
GTGTGGCGCCTAGAGAAGAT+AGG 0.412903 3_4:+26581181 Msa0496200:CDS
GCAGTTGCAGCTAGCGATCC+AGG 0.415139 3_4:-26583156 None:intergenic
GCCATTTGTGCATTATTGCT+TGG 0.415331 3_4:-26582966 None:intergenic
AAGGTTCCAAAGCTCCTAAA+AGG 0.417229 3_4:-26578022 None:intergenic
TACATAGTGAAGGAAAGAAC+TGG 0.419237 3_4:+26579907 Msa0496200:CDS
ACAAATTAGGTTTAGTGTAA+AGG 0.426127 3_4:+26583482 Msa0496200:three_prime_UTR
AAATCAACCTGCCACTTTGT+AGG 0.430518 3_4:+26583526 Msa0496200:three_prime_UTR
TATTATGAACCAAAGAGTTA+AGG 0.431433 3_4:-26577699 None:intergenic
GTATCATACCTGTGAAAATT+GGG 0.431802 3_4:-26579154 None:intergenic
AAGGTTGGTTGTTGATCCCT+TGG 0.434839 3_4:-26579101 None:intergenic
TACAACTCATATTCAGCAAA+AGG 0.439022 3_4:+26579123 Msa0496200:CDS
GAGGTGGAATTGCACCAATT+GGG 0.439927 3_4:+26579971 Msa0496200:CDS
CACATGATGAAAATGAGAAC+TGG 0.445604 3_4:+26579863 Msa0496200:CDS
AGGTTTAGTGTAAAGGTGGC+AGG 0.450388 3_4:+26583489 Msa0496200:three_prime_UTR
CATCTTTCCCTATCTTCTCT+AGG 0.450984 3_4:-26581189 None:intergenic
ACCACAACACCAAATGCAAA+TGG 0.454821 3_4:+26583020 Msa0496200:CDS
CAGATAATTCTAGCTGGATA+AGG 0.456631 3_4:+26580007 Msa0496200:CDS
ATCTCTAGCTTTATAGGGTA+AGG 0.456668 3_4:-26579817 None:intergenic
ACATGGGGAGCAAGATCTAT+AGG 0.460309 3_4:+26581892 Msa0496200:CDS
TTTGCTGAATATGAGTTGTA+AGG 0.462311 3_4:-26579120 None:intergenic
GTGGGAGTAATCAAAGTGTT+AGG 0.463827 3_4:+26580064 Msa0496200:CDS
TTAATTAAAGCTAATATCAA+TGG 0.468078 3_4:+26581960 Msa0496200:CDS
ACCAAGCAATAATGCACAAA+TGG 0.468883 3_4:+26582965 Msa0496200:CDS
CACAAAATGGGATGAGTTGG+AGG 0.470432 3_4:+26582191 Msa0496200:CDS
TCCATTTGCATTTGGTGTTG+TGG 0.474676 3_4:-26583021 None:intergenic
TTGGCTCAAGTACTCTCTGT+TGG 0.478356 3_4:-26581994 None:intergenic
GCATATTGGATTCAGAAGAA+TGG 0.478493 3_4:-26581934 None:intergenic
AATCAACCTGCCACTTTGTA+GGG 0.485321 3_4:+26583527 Msa0496200:three_prime_UTR
CAATTCCACCTCTCATAGTA+AGG 0.486241 3_4:-26579960 None:intergenic
AACATTGCTTTGTTAACTCA+AGG 0.487994 3_4:+26582237 Msa0496200:CDS
CTGAATATGAGTTGTAAGGT+TGG 0.491971 3_4:-26579116 None:intergenic
CCACCACAAAATGATGGCTA+AGG 0.503068 3_4:+26581219 Msa0496200:CDS
TCTCTTCCCTACAAAGTGGC+AGG 0.509034 3_4:-26583533 None:intergenic
TGGAGAAGCATACACAAAAT+GGG 0.514297 3_4:+26582179 Msa0496200:CDS
CACACATCATCGCCAAGCAT+TGG 0.517632 3_4:-26581163 None:intergenic
GATGAGTTGGAGGAAATTGA+TGG 0.519901 3_4:+26582201 Msa0496200:CDS
AAACATCATCCACCAATGCT+TGG 0.524035 3_4:+26581151 Msa0496200:CDS
ATTCTAGCTGGATAAGGAGC+AGG 0.530678 3_4:+26580013 Msa0496200:CDS
TGGTTAGGTGAGTGAAGAGG+TGG 0.534317 3_4:+26579013 Msa0496200:intron
GGTGCTTGGATTCTTAATGA+AGG 0.535525 3_4:-26579080 None:intergenic
ACCTTCAAGTTCTGTCCCTA+GGG 0.537786 3_4:+26583088 Msa0496200:CDS
TTCTCAGGTTCACAATCAGA+TGG 0.540031 3_4:+26583056 Msa0496200:CDS
TGTGAACCTGAGAAGCCAAA+AGG 0.541801 3_4:-26583047 None:intergenic
GTGAACTCTATGTCCCCAAT+TGG 0.542652 3_4:-26579985 None:intergenic
CACCACAAAATGATGGCTAA+GGG 0.548210 3_4:+26581220 Msa0496200:CDS
AGCTATATAGACAAATTGGT+TGG 0.548813 3_4:+26582159 Msa0496200:CDS
AGATGTACTAATTTCGGACC+TGG 0.551434 3_4:+26583138 Msa0496200:exon
AGTTCACAGATAATTCTAGC+TGG 0.556731 3_4:+26580001 Msa0496200:CDS
ACATCATCGCCAAGCATTGG+TGG 0.557359 3_4:-26581160 None:intergenic
ATACACAAAATGGGATGAGT+TGG 0.560256 3_4:+26582188 Msa0496200:CDS
TCCCTAGGGACAGAACTTGA+AGG 0.561736 3_4:-26583089 None:intergenic
CACCTTCAAGTTCTGTCCCT+AGG 0.570752 3_4:+26583087 Msa0496200:CDS
GTGAACCCATTAATGTCCCT+AGG 0.571248 3_4:-26583104 None:intergenic
CTAGAGAAGATAGGGAAAGA+TGG 0.572158 3_4:+26581190 Msa0496200:CDS
GTTGCAGTTATGGTGAGTCG+TGG 0.573264 3_4:+26580045 Msa0496200:CDS
TTCAATTCTCCAGAAAGTAA+TGG 0.573973 3_4:-26579937 None:intergenic
TCTCAGGTTCACAATCAGAT+GGG 0.579270 3_4:+26583057 Msa0496200:CDS
AGGTGGAATTGCACCAATTG+GGG 0.581694 3_4:+26579972 Msa0496200:CDS
CAAAGTGTTAGGATTCAAGA+AGG 0.583699 3_4:+26580075 Msa0496200:CDS
AATTAGGTTTAGTGTAAAGG+TGG 0.585387 3_4:+26583485 Msa0496200:three_prime_UTR
AGTGCGTACGAAGCTAAAGA+AGG 0.588133 3_4:-26577808 None:intergenic
CGGCCAAGATCTATTACAGC+AGG 0.588370 3_4:+26583280 Msa0496200:three_prime_UTR
TGTGGCGCCTAGAGAAGATA+GGG 0.589096 3_4:+26581182 Msa0496200:CDS
AGCTTTCCACCACAAAATGA+TGG 0.589747 3_4:+26581213 Msa0496200:CDS
CTCAGCAATAGATTGGAGAT+CGG 0.590476 3_4:+26583256 Msa0496200:three_prime_UTR
CAATGCTTGGCGATGATGTG+TGG 0.590954 3_4:+26581164 Msa0496200:CDS
ATTCAATAAATACATAGTGA+AGG 0.602832 3_4:+26579897 Msa0496200:CDS
TGAACCCATTAATGTCCCTA+GGG 0.602842 3_4:-26583103 None:intergenic
GGTTTAGTGTAAAGGTGGCA+GGG 0.605074 3_4:+26583490 Msa0496200:three_prime_UTR
TTGCAGTTATGGTGAGTCGT+GGG 0.605352 3_4:+26580046 Msa0496200:CDS
GCAATAGATTGGAGATCGGA+CGG 0.606836 3_4:+26583260 Msa0496200:three_prime_UTR
GAATTGAACCTTACTATGAG+AGG 0.607156 3_4:+26579952 Msa0496200:CDS
TTGAACCTTACTATGAGAGG+TGG 0.618381 3_4:+26579955 Msa0496200:CDS
ATTATCTCTTCCCTACAAAG+TGG 0.620489 3_4:-26583537 None:intergenic
GGTGGCAGGGACTAATGTTG+TGG 0.620928 3_4:+26583503 Msa0496200:three_prime_UTR
TCATACCTGTGAAAATTGGG+AGG 0.624528 3_4:-26579151 None:intergenic
GCATGCAATGACTTGTGACA+TGG 0.626229 3_4:+26581875 Msa0496200:CDS
AGTAGAATACTCGACGCTGA+AGG 0.629771 3_4:+26579730 Msa0496200:CDS
CACAAATGGCTAGCAGTGAG+TGG 0.632254 3_4:+26582979 Msa0496200:CDS
ATTTGGTTAGGTGAGTGAAG+AGG 0.632675 3_4:+26579010 Msa0496200:intron
ACATAGTGAAGGAAAGAACT+GGG 0.634050 3_4:+26579908 Msa0496200:CDS
ATTAAGAATCCAAGCACCAA+GGG 0.638386 3_4:+26579085 Msa0496200:CDS
CATACCTGTGAAAATTGGGA+GGG 0.639003 3_4:-26579150 None:intergenic
ATAGGTAAGCTACGTAAGAG+TGG 0.643477 3_4:+26583367 Msa0496200:three_prime_UTR
CATTAAGAATCCAAGCACCA+AGG 0.647255 3_4:+26579084 Msa0496200:CDS
CTCAGGTTCACAATCAGATG+GGG 0.648069 3_4:+26583058 Msa0496200:CDS
GGGACATTAATGGGTTCACA+AGG 0.658302 3_4:+26583108 Msa0496200:CDS
ACCACAAAATGATGGCTAAG+GGG 0.658660 3_4:+26581221 Msa0496200:CDS
AGCAAGATCTATAGGTACCG+TGG 0.658732 3_4:+26581900 Msa0496200:CDS
GAATGGTAAACTGAGGTCCA+CGG 0.664053 3_4:-26581917 None:intergenic
GGTGACCTATTGATGGAAGG+TGG 0.664907 3_4:-26579059 None:intergenic
TGATACTCCAAAGCTAAGAG+AGG 0.665341 3_4:+26581282 Msa0496200:CDS
CATGCAATGACTTGTGACAT+GGG 0.667953 3_4:+26581876 Msa0496200:CDS
TTCAGAAGAATGGTAAACTG+AGG 0.674138 3_4:-26581924 None:intergenic
GAAGGTGACCTATTGATGGA+AGG 0.674542 3_4:-26579062 None:intergenic
TGGGGATGTCTGATAGAATG+TGG 0.679640 3_4:+26581838 Msa0496200:CDS
TTTGTTGTTAAGGATCATCG+TGG 0.682651 3_4:+26580111 Msa0496200:CDS
GATTCAAGAAGGCATGACTG+AGG 0.696401 3_4:+26580086 Msa0496200:CDS
ATGCAATGACTTGTGACATG+GGG 0.729736 3_4:+26581877 Msa0496200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATTATCTTAAAATTTA+AGG + chr3_4:26578364-26578383 Msa0496200:intron 10.0%
!!! TAATATGATTCTTTAAAAAA+TGG + chr3_4:26578393-26578412 Msa0496200:intron 10.0%
!!! TTTTTATTAAAAATGGTAAA+AGG - chr3_4:26578431-26578450 None:intergenic 10.0%
!!! TTTTAAGATACTTAATAAAA+TGG - chr3_4:26582753-26582772 None:intergenic 10.0%
!!! TAATAACACTTTTGAAAAAA+TGG + chr3_4:26577717-26577736 Msa0496200:exon 15.0%
!! ATACAAATATATTGTTTGTT+GGG - chr3_4:26578224-26578243 None:intergenic 15.0%
!! TATACAAATATATTGTTTGT+TGG - chr3_4:26578225-26578244 None:intergenic 15.0%
!!! AATTTTAAGGTTGTTTAATA+TGG - chr3_4:26578534-26578553 None:intergenic 15.0%
!! ACTTTATTATATGATTCATT+TGG + chr3_4:26578993-26579012 Msa0496200:intron 15.0%
!!! TTTTGTTTTTTTAACTCTAA+TGG - chr3_4:26579522-26579541 None:intergenic 15.0%
!!! ATAAATTTGGTAATCAAATT+TGG - chr3_4:26579625-26579644 None:intergenic 15.0%
!! CATCTTATTAATATGTTTAA+GGG - chr3_4:26580513-26580532 None:intergenic 15.0%
!! TTAACATGTATATATCATTA+GGG - chr3_4:26580661-26580680 None:intergenic 15.0%
!! TTATATTTAGTATTTACAGA+AGG + chr3_4:26580903-26580922 Msa0496200:intron 15.0%
!! AGGTATATATCTTTATAATT+AGG + chr3_4:26581302-26581321 Msa0496200:intron 15.0%
!! GGTATATATCTTTATAATTA+GGG + chr3_4:26581303-26581322 Msa0496200:intron 15.0%
!! GTATATATCTTTATAATTAG+GGG + chr3_4:26581304-26581323 Msa0496200:intron 15.0%
!! TTAATTAAAGCTAATATCAA+TGG + chr3_4:26581960-26581979 Msa0496200:CDS 15.0%
!!! GTTAATATGAACTTAATTTT+AGG + chr3_4:26582831-26582850 Msa0496200:intron 15.0%
!! TAAAATTTGTAGGAATTTAA+TGG - chr3_4:26583332-26583351 None:intergenic 15.0%
!! TTATAGTAAGCAAATATAAT+AGG + chr3_4:26583349-26583368 Msa0496200:three_prime_UTR 15.0%
!! ATATATCATGCATAAGAATA+AGG - chr3_4:26577946-26577965 None:intergenic 20.0%
!! ATGATATATTGAATTCTTCT+TGG + chr3_4:26577957-26577976 Msa0496200:intron 20.0%
!!! ATACATATTTGAAGTTAATG+TGG + chr3_4:26578142-26578161 Msa0496200:intron 20.0%
!!! TGTACAAAAATATTGTTGTT+AGG + chr3_4:26578319-26578338 Msa0496200:intron 20.0%
!! ATTATATGATTCATTTGGTT+AGG + chr3_4:26578998-26579017 Msa0496200:intron 20.0%
!!! TTGATTTGTAAAATTGTTTC+TGG + chr3_4:26579278-26579297 Msa0496200:intron 20.0%
!!! TGATTTGTAAAATTGTTTCT+GGG + chr3_4:26579279-26579298 Msa0496200:intron 20.0%
!!! TTTTTGTCTTGTATGATTTT+TGG - chr3_4:26579405-26579424 None:intergenic 20.0%
!!! AATGACGAAAAGTATAAATT+TGG - chr3_4:26579638-26579657 None:intergenic 20.0%
!! ATTCAATAAATACATAGTGA+AGG + chr3_4:26579897-26579916 Msa0496200:CDS 20.0%
!! TAGCATGATATATTATTGAT+TGG + chr3_4:26580213-26580232 Msa0496200:intron 20.0%
!!! ATTTAGTTGAAATTTTTGCT+CGG - chr3_4:26580323-26580342 None:intergenic 20.0%
!! TTAATATCTTCAACTAACTT+TGG + chr3_4:26580466-26580485 Msa0496200:intron 20.0%
!! CCATCTTATTAATATGTTTA+AGG - chr3_4:26580514-26580533 None:intergenic 20.0%
!! CCTTAAACATATTAATAAGA+TGG + chr3_4:26580511-26580530 Msa0496200:intron 20.0%
!! CTTAACATGTATATATCATT+AGG - chr3_4:26580662-26580681 None:intergenic 20.0%
!! CTAATGATATATACATGTTA+AGG + chr3_4:26580660-26580679 Msa0496200:intron 20.0%
!!! GTTCATTAACATTTGTTTTT+AGG + chr3_4:26580772-26580791 Msa0496200:intron 20.0%
!!! TCTTTATGCTAATTTTGTTT+AGG + chr3_4:26581366-26581385 Msa0496200:intron 20.0%
!! AAGAAATTGATCTTGTATAA+TGG - chr3_4:26581485-26581504 None:intergenic 20.0%
!!! TAAGTTTAAGTTCAAATTTG+AGG - chr3_4:26581525-26581544 None:intergenic 20.0%
!! TAACTCGTTTGTTTATTTAA+AGG + chr3_4:26581554-26581573 Msa0496200:intron 20.0%
!!! ATTTATCTGAAATCAGATTT+TGG + chr3_4:26581812-26581831 Msa0496200:intron 20.0%
!!! TTTATCTGAAATCAGATTTT+GGG + chr3_4:26581813-26581832 Msa0496200:intron 20.0%
!!! GCTTTAATTAATTTGCATAT+TGG - chr3_4:26581951-26581970 None:intergenic 20.0%
!! TATATTGTACCTTATTCATT+TGG - chr3_4:26582016-26582035 None:intergenic 20.0%
!! TTACATTATATGCTAGATAT+TGG + chr3_4:26582089-26582108 Msa0496200:intron 20.0%
!! TATCATCAGAATCAATATTA+TGG + chr3_4:26582909-26582928 Msa0496200:CDS 20.0%
!! AACTTTAGATGTACTAATTT+CGG + chr3_4:26583132-26583151 Msa0496200:exon 20.0%
!! TTGCTTACTATAAAATTTGT+AGG - chr3_4:26583342-26583361 None:intergenic 20.0%
! TATTATGAACCAAAGAGTTA+AGG - chr3_4:26577702-26577721 None:intergenic 25.0%
!!! CTTACAACTCTTTTAAGAAA+AGG - chr3_4:26578044-26578063 None:intergenic 25.0%
! GTCATCTCTTAATTCTTATT+AGG - chr3_4:26578202-26578221 None:intergenic 25.0%
! ATCAAATATTTACAGTCATG+TGG - chr3_4:26578348-26578367 None:intergenic 25.0%
!! CTCAAGACTCATAAATTTTA+AGG - chr3_4:26578547-26578566 None:intergenic 25.0%
! AATTGGAGATTTCATATTGA+CGG - chr3_4:26578623-26578642 None:intergenic 25.0%
!! CAAATCAAACATTTTACAAC+TGG - chr3_4:26579266-26579285 None:intergenic 25.0%
! AATCAAATTTGGCATCTTTA+TGG - chr3_4:26579614-26579633 None:intergenic 25.0%
!! TTTAGTTGAAATTTTTGCTC+GGG - chr3_4:26580322-26580341 None:intergenic 25.0%
! AGTATAATGCCACAATAAAA+GGG - chr3_4:26580394-26580413 None:intergenic 25.0%
! TCTATAGTACAACTAAAAGT+GGG - chr3_4:26580539-26580558 None:intergenic 25.0%
! TGTACTATAGACTATGAAAT+AGG + chr3_4:26580548-26580567 Msa0496200:intron 25.0%
! TACATGTTAAGGAATCTAAA+AGG + chr3_4:26580671-26580690 Msa0496200:intron 25.0%
! AACATTTGTCTTTGTATAAG+AGG + chr3_4:26580804-26580823 Msa0496200:intron 25.0%
! ACATTTGTCTTTGTATAAGA+GGG + chr3_4:26580805-26580824 Msa0496200:intron 25.0%
!!! GTCCTCTAATTCATTTTAAT+TGG + chr3_4:26582111-26582130 Msa0496200:intron 25.0%
! CACCAATTAAAATGAATTAG+AGG - chr3_4:26582116-26582135 None:intergenic 25.0%
!! CTATATAGCTCTACAAATTT+AGG - chr3_4:26582149-26582168 None:intergenic 25.0%
! TCAGACGATCAATTAAAATT+TGG - chr3_4:26582540-26582559 None:intergenic 25.0%
! ATTCAACATATTGGTCATAT+CGG - chr3_4:26582580-26582599 None:intergenic 25.0%
! AATTCACACATTCAACATAT+TGG - chr3_4:26582589-26582608 None:intergenic 25.0%
!! CTAGCAATATTTTCTATAGA+TGG - chr3_4:26582939-26582958 None:intergenic 25.0%
! GAATTTAATGGAATAGGATT+AGG - chr3_4:26583320-26583339 None:intergenic 25.0%
! TTGTAGGAATTTAATGGAAT+AGG - chr3_4:26583326-26583345 None:intergenic 25.0%
! GACTTTGACACATTATTTAT+GGG - chr3_4:26583395-26583414 None:intergenic 25.0%
! TGACTTTGACACATTATTTA+TGG - chr3_4:26583396-26583415 None:intergenic 25.0%
! ATAATGTGTCAAAGTCAAAA+TGG + chr3_4:26583399-26583418 Msa0496200:three_prime_UTR 25.0%
! GCATTGAAGATAAACAAATT+AGG + chr3_4:26583469-26583488 Msa0496200:three_prime_UTR 25.0%
! ACAAATTAGGTTTAGTGTAA+AGG + chr3_4:26583482-26583501 Msa0496200:three_prime_UTR 25.0%
ACATCAAAACCTTAACTCTT+TGG + chr3_4:26577690-26577709 Msa0496200:five_prime_UTR 30.0%
TTGAAAAAATGGCTACCAAA+AGG + chr3_4:26577728-26577747 Msa0496200:exon 30.0%
TGAAAAAATGGCTACCAAAA+GGG + chr3_4:26577729-26577748 Msa0496200:exon 30.0%
! AGAATCATCAAAAACCCTTT+TGG - chr3_4:26577746-26577765 None:intergenic 30.0%
!!! GTAGATAGTAGTTTTTTGCA+TGG - chr3_4:26577894-26577913 None:intergenic 30.0%
AACCTAGCTTATGAAAATTG+AGG + chr3_4:26578280-26578299 Msa0496200:intron 30.0%
ACCTAGCTTATGAAAATTGA+GGG + chr3_4:26578281-26578300 Msa0496200:intron 30.0%
AAGGTTGTTTAATATGGATC+CGG - chr3_4:26578528-26578547 None:intergenic 30.0%
ATTGCAGTTAATTACAAGTG+AGG - chr3_4:26578586-26578605 None:intergenic 30.0%
TTAATGCAAGCTTCATAGTT+AGG - chr3_4:26578887-26578906 None:intergenic 30.0%
TTTGCTGAATATGAGTTGTA+AGG - chr3_4:26579123-26579142 None:intergenic 30.0%
TACAACTCATATTCAGCAAA+AGG + chr3_4:26579123-26579142 Msa0496200:CDS 30.0%
GTATCATACCTGTGAAAATT+GGG - chr3_4:26579157-26579176 None:intergenic 30.0%
AGTATCATACCTGTGAAAAT+TGG - chr3_4:26579158-26579177 None:intergenic 30.0%
!! TTGTCTTGTATGATTTTTGG+TGG - chr3_4:26579402-26579421 None:intergenic 30.0%
TTCTACTACCTGTGAAAATT+GGG - chr3_4:26579717-26579736 None:intergenic 30.0%
ATTCTACTACCTGTGAAAAT+TGG - chr3_4:26579718-26579737 None:intergenic 30.0%
TCAACAAGACTTATGCTTAT+AGG - chr3_4:26579760-26579779 None:intergenic 30.0%
!! CTACAATCTCTAGCTTTATA+GGG - chr3_4:26579825-26579844 None:intergenic 30.0%
!! ACTACAATCTCTAGCTTTAT+AGG - chr3_4:26579826-26579845 None:intergenic 30.0%
TTCAATTCTCCAGAAAGTAA+TGG - chr3_4:26579940-26579959 None:intergenic 30.0%
CAGTATAATGCCACAATAAA+AGG - chr3_4:26580395-26580414 None:intergenic 30.0%
TATTGTGGCATTATACTGTT+CGG + chr3_4:26580397-26580416 Msa0496200:intron 30.0%
CTATAGTACAACTAAAAGTG+GGG - chr3_4:26580538-26580557 None:intergenic 30.0%
GTCTATAGTACAACTAAAAG+TGG - chr3_4:26580540-26580559 None:intergenic 30.0%
! CATTTTATAGCTGCTAGTTA+AGG + chr3_4:26580608-26580627 Msa0496200:intron 30.0%
! AGAGGGTAAATGATTTTTGT+TGG + chr3_4:26580822-26580841 Msa0496200:intron 30.0%
TGTTGGTGTAGTTTAGTTAT+TGG + chr3_4:26580839-26580858 Msa0496200:intron 30.0%
GTTGGTGTAGTTTAGTTATT+GGG + chr3_4:26580840-26580859 Msa0496200:intron 30.0%
ATATATACCTCTCTTAGCTT+TGG - chr3_4:26581292-26581311 None:intergenic 30.0%
TTAGCATAAAGATAGACTCT+AGG - chr3_4:26581358-26581377 None:intergenic 30.0%
TGCTCTTATGATACATGTTA+AGG + chr3_4:26581590-26581609 Msa0496200:intron 30.0%
ATGCTAATTGCACATGTTAA+AGG - chr3_4:26581722-26581741 None:intergenic 30.0%
! TGTAGTCTTACTTTACTTTG+TGG + chr3_4:26582065-26582084 Msa0496200:intron 30.0%
! TAGCTCTACAAATTTAGGAA+TGG - chr3_4:26582144-26582163 None:intergenic 30.0%
GTAGAGCTATATAGACAAAT+TGG + chr3_4:26582155-26582174 Msa0496200:intron 30.0%
AGCTATATAGACAAATTGGT+TGG + chr3_4:26582159-26582178 Msa0496200:CDS 30.0%
! AACATTGCTTTGTTAACTCA+AGG + chr3_4:26582237-26582256 Msa0496200:CDS 30.0%
ATAAGATCATATACTGCTAC+TGG + chr3_4:26582367-26582386 Msa0496200:intron 30.0%
!! GATGACTTAGTTTTTGAACT+AGG + chr3_4:26582483-26582502 Msa0496200:intron 30.0%
!! AATTAGATTTGGATTTGCTG+CGG - chr3_4:26582618-26582637 None:intergenic 30.0%
! TGCACAAGTTGAATTAGATT+TGG - chr3_4:26582629-26582648 None:intergenic 30.0%
!! AATTTTAGGTGATCAAACTG+TGG + chr3_4:26582845-26582864 Msa0496200:intron 30.0%
AAAGGAAATCCATTTGCATT+TGG - chr3_4:26583032-26583051 None:intergenic 30.0%
!! AATGCAAATGGATTTCCTTT+TGG + chr3_4:26583032-26583051 Msa0496200:CDS 30.0%
TTCAACAGCTCAGATTTATT+TGG + chr3_4:26583214-26583233 Msa0496200:three_prime_UTR 30.0%
TGAGATCAAACTGTGAAAAA+TGG - chr3_4:26583240-26583259 None:intergenic 30.0%
! AAAAGAAGTTGCTTTGATCT+TGG + chr3_4:26583423-26583442 Msa0496200:three_prime_UTR 30.0%
! AAAGAAGTTGCTTTGATCTT+GGG + chr3_4:26583424-26583443 Msa0496200:three_prime_UTR 30.0%
AATTAGGTTTAGTGTAAAGG+TGG + chr3_4:26583485-26583504 Msa0496200:three_prime_UTR 30.0%
! CAAAACATGCAGAACCTTTT+AGG + chr3_4:26578008-26578027 Msa0496200:CDS 35.0%
!! TGTGGTTAACTTGTTTCTCA+TGG + chr3_4:26578160-26578179 Msa0496200:intron 35.0%
!! GTGGTTAACTTGTTTCTCAT+GGG + chr3_4:26578161-26578180 Msa0496200:intron 35.0%
!! TAACTTGTTTCTCATGGGTT+AGG + chr3_4:26578166-26578185 Msa0496200:intron 35.0%
! AACTTGTTTCTCATGGGTTA+GGG + chr3_4:26578167-26578186 Msa0496200:intron 35.0%
! ACCCTCAATTTTCATAAGCT+AGG - chr3_4:26578285-26578304 None:intergenic 35.0%
AAGATGGTCCAATGTTAAAC+CGG + chr3_4:26578506-26578525 Msa0496200:intron 35.0%
ATATGGATCCGGTTTAACAT+TGG - chr3_4:26578517-26578536 None:intergenic 35.0%
AAAACCAAAATTCTTGGTCC+TGG - chr3_4:26578679-26578698 None:intergenic 35.0%
!!! AGGACCAAGAATTTTGGTTT+TGG + chr3_4:26578678-26578697 Msa0496200:intron 35.0%
GTGACCAAAACCAAAATTCT+TGG - chr3_4:26578685-26578704 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr3_4:26578751-26578770 None:intergenic 35.0%
TTGTGGTATGAATAGCTATG+CGG - chr3_4:26578851-26578870 None:intergenic 35.0%
!!! TAGGTGAAGTTGGTTTTTTG+TGG - chr3_4:26578868-26578887 None:intergenic 35.0%
TAATGAAGGTGACCTATTGA+TGG - chr3_4:26579069-26579088 None:intergenic 35.0%
ATTAAGAATCCAAGCACCAA+GGG + chr3_4:26579085-26579104 Msa0496200:CDS 35.0%
CTGAATATGAGTTGTAAGGT+TGG - chr3_4:26579119-26579138 None:intergenic 35.0%
CACAGGTATGATACTTACAT+TGG + chr3_4:26579163-26579182 Msa0496200:intron 35.0%
AGATCAGATCTTGTAGAATG+GGG - chr3_4:26579213-26579232 None:intergenic 35.0%
CAGATCAGATCTTGTAGAAT+GGG - chr3_4:26579214-26579233 None:intergenic 35.0%
ACAGATCAGATCTTGTAGAA+TGG - chr3_4:26579215-26579234 None:intergenic 35.0%
! ATTTGCTAAACGGTATGTAC+CGG - chr3_4:26579491-26579510 None:intergenic 35.0%
!! GGTGTGTTTGATTTGCTAAA+CGG - chr3_4:26579501-26579520 None:intergenic 35.0%
GTTAGCGACTAAATTAGAGA+TGG - chr3_4:26579592-26579611 None:intergenic 35.0%
!! GAAGACTTGTTGGAACAATT+TGG - chr3_4:26579798-26579817 None:intergenic 35.0%
!! ATCTCTAGCTTTATAGGGTA+AGG - chr3_4:26579820-26579839 None:intergenic 35.0%
CACATGATGAAAATGAGAAC+TGG + chr3_4:26579863-26579882 Msa0496200:CDS 35.0%
TACATAGTGAAGGAAAGAAC+TGG + chr3_4:26579907-26579926 Msa0496200:CDS 35.0%
ACATAGTGAAGGAAAGAACT+GGG + chr3_4:26579908-26579927 Msa0496200:CDS 35.0%
GAATTGAACCTTACTATGAG+AGG + chr3_4:26579952-26579971 Msa0496200:CDS 35.0%
AGTTCACAGATAATTCTAGC+TGG + chr3_4:26580001-26580020 Msa0496200:CDS 35.0%
! CAGATAATTCTAGCTGGATA+AGG + chr3_4:26580007-26580026 Msa0496200:CDS 35.0%
! CAAAGTGTTAGGATTCAAGA+AGG + chr3_4:26580075-26580094 Msa0496200:CDS 35.0%
!! TTTGTTGTTAAGGATCATCG+TGG + chr3_4:26580111-26580130 Msa0496200:CDS 35.0%
!! ATTTCGGGATTGCTATTTGT+CGG - chr3_4:26580296-26580315 None:intergenic 35.0%
! ATTTTTGCTCGGGATGATTT+CGG - chr3_4:26580312-26580331 None:intergenic 35.0%
!! GGAGGGTATTGTTGTAATTA+AGG - chr3_4:26580354-26580373 None:intergenic 35.0%
TAATGCCACAATAAAAGGGA+GGG - chr3_4:26580390-26580409 None:intergenic 35.0%
ATAATGCCACAATAAAAGGG+AGG - chr3_4:26580391-26580410 None:intergenic 35.0%
ATTGTGGCATTATACTGTTC+GGG + chr3_4:26580398-26580417 Msa0496200:intron 35.0%
!! CATTGCTATTTGTCTCGAAA+TGG - chr3_4:26580440-26580459 None:intergenic 35.0%
! TTGTTGCGACACATTTTTGT+AGG - chr3_4:26580940-26580959 None:intergenic 35.0%
! TATAAGCATTTTTGCCTGTC+AGG + chr3_4:26581007-26581026 Msa0496200:intron 35.0%
ACTACACTATAATTCCTGAC+AGG - chr3_4:26581024-26581043 None:intergenic 35.0%
! AAGATAGACTCTAGGAAATG+TGG - chr3_4:26581350-26581369 None:intergenic 35.0%
! TGAAATCAGATTTTGGGCAT+GGG + chr3_4:26581819-26581838 Msa0496200:intron 35.0%
TTCAGAAGAATGGTAAACTG+AGG - chr3_4:26581927-26581946 None:intergenic 35.0%
GCATATTGGATTCAGAAGAA+TGG - chr3_4:26581937-26581956 None:intergenic 35.0%
GTACTTGAGCCAAATGAATA+AGG + chr3_4:26582004-26582023 Msa0496200:CDS 35.0%
! TTGGAGAAGCATACACAAAA+TGG + chr3_4:26582178-26582197 Msa0496200:CDS 35.0%
! TGGAGAAGCATACACAAAAT+GGG + chr3_4:26582179-26582198 Msa0496200:CDS 35.0%
ATACACAAAATGGGATGAGT+TGG + chr3_4:26582188-26582207 Msa0496200:CDS 35.0%
ATGTCAACTATGTGAAGACA+TGG - chr3_4:26582438-26582457 None:intergenic 35.0%
! CATATTGGTCATATCGGTTA+AGG - chr3_4:26582574-26582593 None:intergenic 35.0%
ACCAAGCAATAATGCACAAA+TGG + chr3_4:26582965-26582984 Msa0496200:CDS 35.0%
GTTTGATCTCAGCAATAGAT+TGG + chr3_4:26583249-26583268 Msa0496200:three_prime_UTR 35.0%
AAGGTTCCAAAGCTCCTAAA+AGG - chr3_4:26578025-26578044 None:intergenic 40.0%
TGCATCTGTGTCAAATGTCA+GGG - chr3_4:26578082-26578101 None:intergenic 40.0%
ATGCATCTGTGTCAAATGTC+AGG - chr3_4:26578083-26578102 None:intergenic 40.0%
GTGACCAAATACAACTTGTG+TGG + chr3_4:26578797-26578816 Msa0496200:intron 40.0%
TGGTCCACACAAGTTGTATT+TGG - chr3_4:26578804-26578823 None:intergenic 40.0%
GAGAAAATCTTGTGTGGTCT+TGG - chr3_4:26578824-26578843 None:intergenic 40.0%
GCTTCATAGTTAGGTGAAGT+TGG - chr3_4:26578878-26578897 None:intergenic 40.0%
ATTTGGTTAGGTGAGTGAAG+AGG + chr3_4:26579010-26579029 Msa0496200:intron 40.0%
GGTGCTTGGATTCTTAATGA+AGG - chr3_4:26579083-26579102 None:intergenic 40.0%
CATTAAGAATCCAAGCACCA+AGG + chr3_4:26579084-26579103 Msa0496200:CDS 40.0%
CATACCTGTGAAAATTGGGA+GGG - chr3_4:26579153-26579172 None:intergenic 40.0%
TCATACCTGTGAAAATTGGG+AGG - chr3_4:26579154-26579173 None:intergenic 40.0%
! AACTTCGTCCCAATTTTCAC+AGG + chr3_4:26579706-26579725 Msa0496200:intron 40.0%
ATAGGGTAAGGAAGACTTGT+TGG - chr3_4:26579808-26579827 None:intergenic 40.0%
CTAGAGATTGTAGTGCTTGA+TGG + chr3_4:26579832-26579851 Msa0496200:CDS 40.0%
TTGAACCTTACTATGAGAGG+TGG + chr3_4:26579955-26579974 Msa0496200:CDS 40.0%
CAATTCCACCTCTCATAGTA+AGG - chr3_4:26579963-26579982 None:intergenic 40.0%
GATAAGGAGCAGGAAGTTTA+GGG + chr3_4:26580023-26580042 Msa0496200:CDS 40.0%
! GAAGTTTAGGGTTGCAGTTA+TGG + chr3_4:26580035-26580054 Msa0496200:CDS 40.0%
! GTGGGAGTAATCAAAGTGTT+AGG + chr3_4:26580064-26580083 Msa0496200:CDS 40.0%
!! GACTGAGGCATTTGTTGTTA+AGG + chr3_4:26580101-26580120 Msa0496200:CDS 40.0%
!! TTTCGGGATTGCTATTTGTC+GGG - chr3_4:26580295-26580314 None:intergenic 40.0%
! TTTTTGCTCGGGATGATTTC+GGG - chr3_4:26580311-26580330 None:intergenic 40.0%
AATACCCTCCCATGTATTGT+GGG + chr3_4:26580364-26580383 Msa0496200:intron 40.0%
TATACTGTTCGGGAATGCAT+CGG + chr3_4:26580408-26580427 Msa0496200:intron 40.0%
AAACATCATCCACCAATGCT+TGG + chr3_4:26581151-26581170 Msa0496200:CDS 40.0%
CATCTTTCCCTATCTTCTCT+AGG - chr3_4:26581192-26581211 None:intergenic 40.0%
CTAGAGAAGATAGGGAAAGA+TGG + chr3_4:26581190-26581209 Msa0496200:CDS 40.0%
AGCTTTCCACCACAAAATGA+TGG + chr3_4:26581213-26581232 Msa0496200:CDS 40.0%
CACCACAAAATGATGGCTAA+GGG + chr3_4:26581220-26581239 Msa0496200:CDS 40.0%
ACCACAAAATGATGGCTAAG+GGG + chr3_4:26581221-26581240 Msa0496200:CDS 40.0%
TGATACTCCAAAGCTAAGAG+AGG + chr3_4:26581282-26581301 Msa0496200:CDS 40.0%
! CTGAAATCAGATTTTGGGCA+TGG + chr3_4:26581818-26581837 Msa0496200:intron 40.0%
! GAAATCAGATTTTGGGCATG+GGG + chr3_4:26581820-26581839 Msa0496200:intron 40.0%
! CATGCAATGACTTGTGACAT+GGG + chr3_4:26581876-26581895 Msa0496200:CDS 40.0%
! ATGCAATGACTTGTGACATG+GGG + chr3_4:26581877-26581896 Msa0496200:CDS 40.0%
TGTGAGTCTTGAGTAGTAGA+TGG - chr3_4:26582043-26582062 None:intergenic 40.0%
! GATGAGTTGGAGGAAATTGA+TGG + chr3_4:26582201-26582220 Msa0496200:CDS 40.0%
GATCATATACTGCTACTGGT+TGG + chr3_4:26582371-26582390 Msa0496200:intron 40.0%
ACTGTTGCTGGATGATTGTT+TGG - chr3_4:26582879-26582898 None:intergenic 40.0%
TATGTTGTTGCTACTGTTGC+TGG - chr3_4:26582891-26582910 None:intergenic 40.0%
GCCATTTGTGCATTATTGCT+TGG - chr3_4:26582969-26582988 None:intergenic 40.0%
!! TGCATTTGGTGTTGTGGTAT+AGG - chr3_4:26583018-26583037 None:intergenic 40.0%
ACCACAACACCAAATGCAAA+TGG + chr3_4:26583020-26583039 Msa0496200:CDS 40.0%
!! TCCATTTGCATTTGGTGTTG+TGG - chr3_4:26583024-26583043 None:intergenic 40.0%
TTCTCAGGTTCACAATCAGA+TGG + chr3_4:26583056-26583075 Msa0496200:CDS 40.0%
TCTCAGGTTCACAATCAGAT+GGG + chr3_4:26583057-26583076 Msa0496200:CDS 40.0%
TGAACCCATTAATGTCCCTA+GGG - chr3_4:26583106-26583125 None:intergenic 40.0%
AGATGTACTAATTTCGGACC+TGG + chr3_4:26583138-26583157 Msa0496200:exon 40.0%
CTCAGCAATAGATTGGAGAT+CGG + chr3_4:26583256-26583275 Msa0496200:three_prime_UTR 40.0%
ATAGGTAAGCTACGTAAGAG+TGG + chr3_4:26583367-26583386 Msa0496200:three_prime_UTR 40.0%
GGTCTCATTCGTTTGTCGTT+TGG - chr3_4:26577790-26577809 None:intergenic 45.0%
AGTGCGTACGAAGCTAAAGA+AGG - chr3_4:26577811-26577830 None:intergenic 45.0%
!! GCAGAACCTTTTAGGAGCTT+TGG + chr3_4:26578016-26578035 Msa0496200:CDS 45.0%
!! TGTTTCTCATGGGTTAGGGT+TGG + chr3_4:26578171-26578190 Msa0496200:intron 45.0%
!! GTTTCTCATGGGTTAGGGTT+GGG + chr3_4:26578172-26578191 Msa0496200:intron 45.0%
!! TTTCTCATGGGTTAGGGTTG+GGG + chr3_4:26578173-26578192 Msa0496200:intron 45.0%
TCCACACAAGTGTTTCTCTG+CGG - chr3_4:26578656-26578675 None:intergenic 45.0%
! TGGACCAGGACCAAGAATTT+TGG + chr3_4:26578672-26578691 Msa0496200:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr3_4:26578724-26578743 None:intergenic 45.0%
GGAGACGAGAAAATCTTGTG+TGG - chr3_4:26578830-26578849 None:intergenic 45.0%
GAAGAGGTGGATAGAGCAAT+TGG + chr3_4:26579026-26579045 Msa0496200:CDS 45.0%
GCTTTCCACCTTCCATCAAT+AGG + chr3_4:26579054-26579073 Msa0496200:CDS 45.0%
GAAGGTGACCTATTGATGGA+AGG - chr3_4:26579065-26579084 None:intergenic 45.0%
! AAGGTTGGTTGTTGATCCCT+TGG - chr3_4:26579104-26579123 None:intergenic 45.0%
! CTTTCCCTCCCAATTTTCAC+AGG + chr3_4:26579146-26579165 Msa0496200:CDS 45.0%
AGTAGAATACTCGACGCTGA+AGG + chr3_4:26579730-26579749 Msa0496200:CDS 45.0%
GGGAAGAGACCATTACTTTC+TGG + chr3_4:26579928-26579947 Msa0496200:CDS 45.0%
AGAGGTGGAATTGCACCAAT+TGG + chr3_4:26579970-26579989 Msa0496200:CDS 45.0%
GAGGTGGAATTGCACCAATT+GGG + chr3_4:26579971-26579990 Msa0496200:CDS 45.0%
AGGTGGAATTGCACCAATTG+GGG + chr3_4:26579972-26579991 Msa0496200:CDS 45.0%
GTGAACTCTATGTCCCCAAT+TGG - chr3_4:26579988-26580007 None:intergenic 45.0%
! ATTCTAGCTGGATAAGGAGC+AGG + chr3_4:26580013-26580032 Msa0496200:CDS 45.0%
GGATAAGGAGCAGGAAGTTT+AGG + chr3_4:26580022-26580041 Msa0496200:CDS 45.0%
TTGCAGTTATGGTGAGTCGT+GGG + chr3_4:26580046-26580065 Msa0496200:CDS 45.0%
! GATTCAAGAAGGCATGACTG+AGG + chr3_4:26580086-26580105 Msa0496200:CDS 45.0%
CAATACCCTCCCATGTATTG+TGG + chr3_4:26580363-26580382 Msa0496200:intron 45.0%
ATACTGTTCGGGAATGCATC+GGG + chr3_4:26580409-26580428 Msa0496200:intron 45.0%
! CCTTAGCCATCATTTTGTGG+TGG - chr3_4:26581222-26581241 None:intergenic 45.0%
CCACCACAAAATGATGGCTA+AGG + chr3_4:26581219-26581238 Msa0496200:CDS 45.0%
! TCCCCTTAGCCATCATTTTG+TGG - chr3_4:26581225-26581244 None:intergenic 45.0%
TGGGGATGTCTGATAGAATG+TGG + chr3_4:26581838-26581857 Msa0496200:CDS 45.0%
! GCATGCAATGACTTGTGACA+TGG + chr3_4:26581875-26581894 Msa0496200:CDS 45.0%
ACATGGGGAGCAAGATCTAT+AGG + chr3_4:26581892-26581911 Msa0496200:CDS 45.0%
! AGCAAGATCTATAGGTACCG+TGG + chr3_4:26581900-26581919 Msa0496200:CDS 45.0%
GAATGGTAAACTGAGGTCCA+CGG - chr3_4:26581920-26581939 None:intergenic 45.0%
TTGGCTCAAGTACTCTCTGT+TGG - chr3_4:26581997-26582016 None:intergenic 45.0%
! CACAAAATGGGATGAGTTGG+AGG + chr3_4:26582191-26582210 Msa0496200:CDS 45.0%
CCACTACAACATGTCTTGTG+TGG - chr3_4:26582407-26582426 None:intergenic 45.0%
CCACACAAGACATGTTGTAG+TGG + chr3_4:26582404-26582423 Msa0496200:intron 45.0%
!!! GGATTTCCTTTTGGCTTCTC+AGG + chr3_4:26583041-26583060 Msa0496200:CDS 45.0%
TGTGAACCTGAGAAGCCAAA+AGG - chr3_4:26583050-26583069 None:intergenic 45.0%
CTCAGGTTCACAATCAGATG+GGG + chr3_4:26583058-26583077 Msa0496200:CDS 45.0%
! ACCTTCAAGTTCTGTCCCTA+GGG + chr3_4:26583088-26583107 Msa0496200:CDS 45.0%
TCTGTCCCTAGGGACATTAA+TGG + chr3_4:26583098-26583117 Msa0496200:CDS 45.0%
CTGTCCCTAGGGACATTAAT+GGG + chr3_4:26583099-26583118 Msa0496200:CDS 45.0%
GTGAACCCATTAATGTCCCT+AGG - chr3_4:26583107-26583126 None:intergenic 45.0%
!! GGGACATTAATGGGTTCACA+AGG + chr3_4:26583108-26583127 Msa0496200:CDS 45.0%
GCAATAGATTGGAGATCGGA+CGG + chr3_4:26583260-26583279 Msa0496200:three_prime_UTR 45.0%
CGTCCTGCTGTAATAGATCT+TGG - chr3_4:26583286-26583305 None:intergenic 45.0%
AGGTTTAGTGTAAAGGTGGC+AGG + chr3_4:26583489-26583508 Msa0496200:three_prime_UTR 45.0%
GGTTTAGTGTAAAGGTGGCA+GGG + chr3_4:26583490-26583509 Msa0496200:three_prime_UTR 45.0%
!!! ATTCATTTTTTTATTAAAAA+TGG - chr3_4:26578438-26578457 None:intergenic 5.0%
!!! ATATTTTATTAAAAATAAGA+TGG + chr3_4:26578490-26578509 Msa0496200:intron 5.0%
!! AATCTAATATATTTAATTAA+AGG - chr3_4:26581748-26581767 None:intergenic 5.0%
TCTGCGGAGACTACTGCAAT+TGG - chr3_4:26578640-26578659 None:intergenic 50.0%
TCCGCAGAGAAACACTTGTG+TGG + chr3_4:26578652-26578671 Msa0496200:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr3_4:26578658-26578677 Msa0496200:intron 50.0%
TGGTTAGGTGAGTGAAGAGG+TGG + chr3_4:26579013-26579032 Msa0496200:intron 50.0%
GGTGACCTATTGATGGAAGG+TGG - chr3_4:26579062-26579081 None:intergenic 50.0%
!! GTTGTTGATCCCTTGGTGCT+TGG - chr3_4:26579097-26579116 None:intergenic 50.0%
!! CTGTCATGTGCTGCTTTGTC+CGG + chr3_4:26579469-26579488 Msa0496200:intron 50.0%
GTTGCAGTTATGGTGAGTCG+TGG + chr3_4:26580045-26580064 Msa0496200:CDS 50.0%
!! ACATCATCGCCAAGCATTGG+TGG - chr3_4:26581163-26581182 None:intergenic 50.0%
CACACATCATCGCCAAGCAT+TGG - chr3_4:26581166-26581185 None:intergenic 50.0%
CAATGCTTGGCGATGATGTG+TGG + chr3_4:26581164-26581183 Msa0496200:CDS 50.0%
TGTGGCGCCTAGAGAAGATA+GGG + chr3_4:26581182-26581201 Msa0496200:CDS 50.0%
CACAAATGGCTAGCAGTGAG+TGG + chr3_4:26582979-26582998 Msa0496200:CDS 50.0%
! CACCTTCAAGTTCTGTCCCT+AGG + chr3_4:26583087-26583106 Msa0496200:CDS 50.0%
TCCCTAGGGACAGAACTTGA+AGG - chr3_4:26583092-26583111 None:intergenic 50.0%
CGGCCAAGATCTATTACAGC+AGG + chr3_4:26583280-26583299 Msa0496200:three_prime_UTR 50.0%
AGGGCCCACAATACATGGGA+GGG - chr3_4:26580371-26580390 None:intergenic 55.0%
AGGGAGGGCCCACAATACAT+GGG - chr3_4:26580375-26580394 None:intergenic 55.0%
AAGGGAGGGCCCACAATACA+TGG - chr3_4:26580376-26580395 None:intergenic 55.0%
! GTGGGCCCTCCCTTTTATTG+TGG + chr3_4:26580382-26580401 Msa0496200:intron 55.0%
GTGTGGCGCCTAGAGAAGAT+AGG + chr3_4:26581181-26581200 Msa0496200:CDS 55.0%
GGTGGCAGGGACTAATGTTG+TGG + chr3_4:26583503-26583522 Msa0496200:three_prime_UTR 55.0%
!! CTCATGGGTTAGGGTTGGGG+TGG + chr3_4:26578176-26578195 Msa0496200:intron 60.0%
GAGGGCCCACAATACATGGG+AGG - chr3_4:26580372-26580391 None:intergenic 60.0%
GCAGTTGCAGCTAGCGATCC+AGG - chr3_4:26583159-26583178 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 26577664 26583546 26577664 ID=Msa0496200;Name=Msa0496200
chr3_4 mRNA 26577664 26583546 26577664 ID=Msa0496200-mRNA-1;Parent=Msa0496200;Name=Msa0496200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|1|1|1|1|1|8|407|488
chr3_4 exon 26577664 26577821 26577664 ID=Msa0496200-mRNA-1:exon:6312;Parent=Msa0496200-mRNA-1
chr3_4 exon 26577983 26578058 26577983 ID=Msa0496200-mRNA-1:exon:6313;Parent=Msa0496200-mRNA-1
chr3_4 exon 26579020 26579167 26579020 ID=Msa0496200-mRNA-1:exon:6314;Parent=Msa0496200-mRNA-1
chr3_4 exon 26579728 26580138 26579728 ID=Msa0496200-mRNA-1:exon:6315;Parent=Msa0496200-mRNA-1
chr3_4 exon 26581143 26581303 26581143 ID=Msa0496200-mRNA-1:exon:6316;Parent=Msa0496200-mRNA-1
chr3_4 exon 26581828 26582025 26581828 ID=Msa0496200-mRNA-1:exon:6317;Parent=Msa0496200-mRNA-1
chr3_4 exon 26582159 26582258 26582159 ID=Msa0496200-mRNA-1:exon:6318;Parent=Msa0496200-mRNA-1
chr3_4 exon 26582853 26583546 26582853 ID=Msa0496200-mRNA-1:exon:6319;Parent=Msa0496200-mRNA-1
chr3_4 five_prime_UTR 26577664 26577735 26577664 ID=Msa0496200-mRNA-1:five_prime_utr;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26577736 26577821 26577736 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26577983 26578058 26577983 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26579020 26579167 26579020 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26579728 26580138 26579728 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26581143 26581303 26581143 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26581828 26582025 26581828 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26582159 26582258 26582159 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 CDS 26582853 26583139 26582853 ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1
chr3_4 three_prime_UTR 26583140 26583546 26583140 ID=Msa0496200-mRNA-1:three_prime_utr;Parent=Msa0496200-mRNA-1
Gene Sequence

>Msa0496200

ATGGCTACCAAAAGGGTTTTTGATGATTCTAATGATAAAGATCAAGACAATCCAAACGACAAACGAATGAGACCTTCTTTAGCTTCTGTGCTAGAAAGAGCAGTTAAAGTGCAAAACATGCAGAACCTTTTAGGAGCTTTGGAACCTTTTCTTAAAAGAGTTGTGAGTGAAGAGGTGGATAGAGCAATTGGAAACTGCTTTCCACCTTCCATCAATAGGTCACCTTCATTAAGAATCCAAGCACCAAGGGATCAACAACCAACCTTACAACTCATATTCAGCAAAAGGCTTTCCCTCCCAATTTTCACAGGTAGTAGAATACTCGACGCTGAAGGTAAGCCTATAAGCATAAGTCTTGTTGACAAAACAAACAACAACCAAATTGTTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTAGTGCTTGATGGAGATTTTACACATGATGAAAATGAGAACTGGACTAGTGAAGAATTCAATAAATACATAGTGAAGGAAAGAACTGGGAAGAGACCATTACTTTCTGGAGAATTGAACCTTACTATGAGAGGTGGAATTGCACCAATTGGGGACATAGAGTTCACAGATAATTCTAGCTGGATAAGGAGCAGGAAGTTTAGGGTTGCAGTTATGGTGAGTCGTGGGAGTAATCAAAGTGTTAGGATTCAAGAAGGCATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATTGTACAAAAAACATCATCCACCAATGCTTGGCGATGATGTGTGGCGCCTAGAGAAGATAGGGAAAGATGGAGCTTTCCACCACAAAATGATGGCTAAGGGGATCAAAACAGTGCAAGACTTTCTTAAATTAGCAGTTATTGATACTCCAAAGCTAAGAGAGATTTTGGGCATGGGGATGTCTGATAGAATGTGGAAAGTCACAATAAAGCATGCAATGACTTGTGACATGGGGAGCAAGATCTATAGGTACCGTGGACCTCAGTTTACCATTCTTCTGAATCCAATATGCAAATTAATTAAAGCTAATATCAATGGACAAGAATTTTCCAACAGAGAGTACTTGAGCCAAATGAATAAGAGCTATATAGACAAATTGGTTGGAGAAGCATACACAAAATGGGATGAGTTGGAGGAAATTGATGGAGTTTTAAATGATAACATTGCTTTGTTAACTCAAGGTGATCAAACTGTGGAGCAATATCCAAACAATCATCCAGCAACAGTAGCAACAACATATCATCAGAATCAATATTATGGTGATCCATCTATAGAAAATATTGCTAGCTATGTACCAAGCAATAATGCACAAATGGCTAGCAGTGAGTGGTTATTGAATCAAGCCTATACCACAACACCAAATGCAAATGGATTTCCTTTTGGCTTCTCAGGTTCACAATCAGATGGGGATATGACACCTTCAAGTTCTGTCCCTAGGGACATTAATGGGTTCACAAGGCAACTTTAG

Protein sequence

>Msa0496200

MATKRVFDDSNDKDQDNPNDKRMRPSLASVLERAVKVQNMQNLLGALEPFLKRVVSEEVDRAIGNCFPPSINRSPSLRIQAPRDQQPTLQLIFSKRLSLPIFTGSRILDAEGKPISISLVDKTNNNQIVPTSLPYPIKLEIVVLDGDFTHDENENWTSEEFNKYIVKERTGKRPLLSGELNLTMRGGIAPIGDIEFTDNSSWIRSRKFRVAVMVSRGSNQSVRIQEGMTEAFVVKDHRGELYKKHHPPMLGDDVWRLEKIGKDGAFHHKMMAKGIKTVQDFLKLAVIDTPKLREILGMGMSDRMWKVTIKHAMTCDMGSKIYRYRGPQFTILLNPICKLIKANINGQEFSNREYLSQMNKSYIDKLVGEAYTKWDELEEIDGVLNDNIALLTQGDQTVEQYPNNHPATVATTYHQNQYYGDPSIENIASYVPSNNAQMASSEWLLNQAYTTTPNANGFPFGFSGSQSDGDMTPSSSVPRDINGFTRQL*