Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0496200 | XP_039683138.1 | 91.075 | 493 | 39 | 1 | 1 | 488 | 1 | 493 | 0.0 | 934 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0496200 | sp|Q9C9T2|SARD1_ARATH | 48.750 | 480 | 209 | 12 | 1 | 473 | 1 | 450 | 6.71e-144 | 423 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0496200 | A0A396HLL0 | 91.075 | 493 | 39 | 1 | 1 | 488 | 1 | 493 | 0.0 | 934 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0496200 | Msa0496210 | 0.805011 | 1.639957e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0496200 | MtrunA17_Chr6g0484111 | 91.075 | 493 | 39 | 1 | 1 | 488 | 1 | 493 | 0.0 | 934 |
Msa0496200 | MtrunA17_Chr6g0484131 | 90.669 | 493 | 33 | 2 | 1 | 488 | 1 | 485 | 0.0 | 920 |
Msa0496200 | MtrunA17_Chr6g0484121 | 90.061 | 493 | 36 | 2 | 1 | 488 | 1 | 485 | 0.0 | 912 |
Msa0496200 | MtrunA17_Chr8g0391221 | 63.617 | 481 | 159 | 10 | 1 | 473 | 1 | 473 | 0.0 | 601 |
Msa0496200 | MtrunA17_Chr8g0391211 | 62.702 | 496 | 164 | 15 | 1 | 486 | 72 | 556 | 0.0 | 580 |
Msa0496200 | MtrunA17_Chr4g0072691 | 47.165 | 388 | 192 | 7 | 27 | 409 | 3 | 382 | 8.52e-117 | 356 |
Msa0496200 | MtrunA17_Chr4g0048161 | 42.073 | 492 | 254 | 13 | 2 | 487 | 13 | 479 | 1.24e-116 | 356 |
Msa0496200 | MtrunA17_Chr2g0281171 | 46.565 | 393 | 198 | 7 | 1 | 387 | 12 | 398 | 4.28e-115 | 352 |
Msa0496200 | MtrunA17_Chr2g0304831 | 42.534 | 442 | 230 | 8 | 4 | 437 | 11 | 436 | 2.52e-111 | 341 |
Msa0496200 | MtrunA17_Chr4g0059411 | 47.368 | 304 | 152 | 7 | 14 | 315 | 9 | 306 | 1.22e-80 | 260 |
Msa0496200 | MtrunA17_Chr7g0271691 | 34.857 | 350 | 209 | 9 | 47 | 390 | 44 | 380 | 6.40e-51 | 181 |
Msa0496200 | MtrunA17_Chr7g0271671 | 31.910 | 398 | 243 | 13 | 1 | 378 | 1 | 390 | 2.87e-46 | 169 |
Msa0496200 | MtrunA17_Chr7g0271681 | 35.254 | 295 | 178 | 7 | 89 | 376 | 10 | 298 | 3.73e-43 | 159 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0496200 | AT1G73805.1 | 48.750 | 480 | 209 | 12 | 1 | 473 | 1 | 450 | 6.82e-145 | 423 |
Msa0496200 | AT5G57580.1 | 41.075 | 521 | 248 | 14 | 9 | 482 | 17 | 525 | 2.12e-116 | 357 |
Msa0496200 | AT4G25800.1 | 47.013 | 385 | 189 | 7 | 4 | 382 | 2 | 377 | 1.12e-112 | 345 |
Msa0496200 | AT4G25800.2 | 47.013 | 385 | 189 | 7 | 4 | 382 | 2 | 377 | 1.12e-112 | 345 |
Msa0496200 | AT2G18750.3 | 40.299 | 469 | 258 | 10 | 4 | 457 | 16 | 477 | 1.51e-109 | 338 |
Msa0496200 | AT2G18750.2 | 40.299 | 469 | 258 | 10 | 4 | 457 | 16 | 477 | 1.51e-109 | 338 |
Msa0496200 | AT2G18750.1 | 40.299 | 469 | 258 | 10 | 4 | 457 | 16 | 477 | 1.51e-109 | 338 |
Msa0496200 | AT2G24300.2 | 43.264 | 386 | 211 | 6 | 4 | 384 | 3 | 385 | 2.22e-97 | 306 |
Msa0496200 | AT2G24300.3 | 43.264 | 386 | 211 | 6 | 4 | 384 | 7 | 389 | 2.48e-97 | 306 |
Msa0496200 | AT4G31000.1 | 41.412 | 425 | 227 | 11 | 11 | 422 | 13 | 428 | 3.09e-96 | 302 |
Msa0496200 | AT5G62570.4 | 39.410 | 373 | 202 | 10 | 1 | 363 | 1 | 359 | 2.47e-84 | 265 |
Msa0496200 | AT5G62570.1 | 38.363 | 391 | 217 | 10 | 1 | 381 | 1 | 377 | 3.77e-84 | 269 |
Msa0496200 | AT2G24300.1 | 43.713 | 334 | 181 | 5 | 55 | 384 | 8 | 338 | 7.38e-84 | 269 |
Msa0496200 | AT5G62570.2 | 39.227 | 362 | 199 | 8 | 29 | 381 | 13 | 362 | 4.84e-82 | 263 |
Msa0496200 | AT4G31000.2 | 37.150 | 428 | 220 | 15 | 11 | 422 | 13 | 407 | 1.72e-71 | 236 |
Msa0496200 | AT5G26920.3 | 35.556 | 360 | 212 | 8 | 26 | 381 | 24 | 367 | 1.48e-68 | 226 |
Msa0496200 | AT5G62570.3 | 41.528 | 301 | 157 | 8 | 1 | 295 | 1 | 288 | 2.89e-68 | 221 |
Msa0496200 | AT5G26920.1 | 35.556 | 360 | 212 | 8 | 26 | 381 | 24 | 367 | 1.05e-67 | 227 |
Msa0496200 | AT5G26920.2 | 35.278 | 360 | 205 | 9 | 26 | 381 | 24 | 359 | 2.82e-64 | 218 |
Find 147 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACTTTGACACATTATTTA+TGG | 0.132750 | 3_4:-26583393 | None:intergenic |
TAAAATTTGTAGGAATTTAA+TGG | 0.161623 | 3_4:-26583329 | None:intergenic |
TCAACAAGACTTATGCTTAT+AGG | 0.197679 | 3_4:-26579757 | None:intergenic |
ACTACAATCTCTAGCTTTAT+AGG | 0.214346 | 3_4:-26579823 | None:intergenic |
GGATAAGGAGCAGGAAGTTT+AGG | 0.223342 | 3_4:+26580022 | Msa0496200:CDS |
TTCAACAGCTCAGATTTATT+TGG | 0.233641 | 3_4:+26583214 | Msa0496200:three_prime_UTR |
GAAGACTTGTTGGAACAATT+TGG | 0.268874 | 3_4:-26579795 | None:intergenic |
GGGAAGAGACCATTACTTTC+TGG | 0.273521 | 3_4:+26579928 | Msa0496200:CDS |
AACTTTAGATGTACTAATTT+CGG | 0.278358 | 3_4:+26583132 | Msa0496200:exon |
GCTTTAATTAATTTGCATAT+TGG | 0.279068 | 3_4:-26581948 | None:intergenic |
GACTTTGACACATTATTTAT+GGG | 0.281076 | 3_4:-26583392 | None:intergenic |
AGTATCATACCTGTGAAAAT+TGG | 0.282063 | 3_4:-26579155 | None:intergenic |
ACATCAAAACCTTAACTCTT+TGG | 0.284205 | 3_4:+26577690 | Msa0496200:five_prime_UTR |
TTGCTTACTATAAAATTTGT+AGG | 0.293623 | 3_4:-26583339 | None:intergenic |
TTGGAGAAGCATACACAAAA+TGG | 0.297191 | 3_4:+26582178 | Msa0496200:CDS |
TTATAGTAAGCAAATATAAT+AGG | 0.302924 | 3_4:+26583349 | Msa0496200:three_prime_UTR |
ACTGTTGCTGGATGATTGTT+TGG | 0.310236 | 3_4:-26582876 | None:intergenic |
GCATTGAAGATAAACAAATT+AGG | 0.310253 | 3_4:+26583469 | Msa0496200:three_prime_UTR |
TATGTTGTTGCTACTGTTGC+TGG | 0.313492 | 3_4:-26582888 | None:intergenic |
TGCATTTGGTGTTGTGGTAT+AGG | 0.314012 | 3_4:-26583015 | None:intergenic |
GTAGAGCTATATAGACAAAT+TGG | 0.314437 | 3_4:+26582155 | Msa0496200:intron |
AATGCAAATGGATTTCCTTT+TGG | 0.323071 | 3_4:+26583032 | Msa0496200:CDS |
TATCATCAGAATCAATATTA+TGG | 0.324552 | 3_4:+26582909 | Msa0496200:CDS |
CTAGAGATTGTAGTGCTTGA+TGG | 0.330811 | 3_4:+26579832 | Msa0496200:CDS |
AAAAGAAGTTGCTTTGATCT+TGG | 0.331441 | 3_4:+26583423 | Msa0496200:three_prime_UTR |
TTGTAGGAATTTAATGGAAT+AGG | 0.340830 | 3_4:-26583323 | None:intergenic |
TATATTGTACCTTATTCATT+TGG | 0.342595 | 3_4:-26582013 | None:intergenic |
GATAAGGAGCAGGAAGTTTA+GGG | 0.346752 | 3_4:+26580023 | Msa0496200:CDS |
AAAGAAGTTGCTTTGATCTT+GGG | 0.359234 | 3_4:+26583424 | Msa0496200:three_prime_UTR |
GAATTTAATGGAATAGGATT+AGG | 0.362207 | 3_4:-26583317 | None:intergenic |
GGTCTCATTCGTTTGTCGTT+TGG | 0.363334 | 3_4:-26577787 | None:intergenic |
GTACTTGAGCCAAATGAATA+AGG | 0.364385 | 3_4:+26582004 | Msa0496200:CDS |
AAAGGAAATCCATTTGCATT+TGG | 0.365748 | 3_4:-26583029 | None:intergenic |
GAAGAGGTGGATAGAGCAAT+TGG | 0.372285 | 3_4:+26579026 | Msa0496200:CDS |
GACTGAGGCATTTGTTGTTA+AGG | 0.376185 | 3_4:+26580101 | Msa0496200:CDS |
ATATATACCTCTCTTAGCTT+TGG | 0.385685 | 3_4:-26581289 | None:intergenic |
CTACAATCTCTAGCTTTATA+GGG | 0.387802 | 3_4:-26579822 | None:intergenic |
GCTTTCCACCTTCCATCAAT+AGG | 0.389606 | 3_4:+26579054 | Msa0496200:CDS |
ATAGGGTAAGGAAGACTTGT+TGG | 0.390458 | 3_4:-26579805 | None:intergenic |
CTGTCCCTAGGGACATTAAT+GGG | 0.391628 | 3_4:+26583099 | Msa0496200:CDS |
ATAATGTGTCAAAGTCAAAA+TGG | 0.394518 | 3_4:+26583399 | Msa0496200:three_prime_UTR |
TCTGTCCCTAGGGACATTAA+TGG | 0.395267 | 3_4:+26583098 | Msa0496200:CDS |
GTTTGATCTCAGCAATAGAT+TGG | 0.399968 | 3_4:+26583249 | Msa0496200:three_prime_UTR |
GTTGTTGATCCCTTGGTGCT+TGG | 0.401027 | 3_4:-26579094 | None:intergenic |
GAAGTTTAGGGTTGCAGTTA+TGG | 0.408854 | 3_4:+26580035 | Msa0496200:CDS |
TAATGAAGGTGACCTATTGA+TGG | 0.408912 | 3_4:-26579066 | None:intergenic |
AGAGGTGGAATTGCACCAAT+TGG | 0.409164 | 3_4:+26579970 | Msa0496200:CDS |
CGTCCTGCTGTAATAGATCT+TGG | 0.410560 | 3_4:-26583283 | None:intergenic |
GTGTGGCGCCTAGAGAAGAT+AGG | 0.412903 | 3_4:+26581181 | Msa0496200:CDS |
GCAGTTGCAGCTAGCGATCC+AGG | 0.415139 | 3_4:-26583156 | None:intergenic |
GCCATTTGTGCATTATTGCT+TGG | 0.415331 | 3_4:-26582966 | None:intergenic |
AAGGTTCCAAAGCTCCTAAA+AGG | 0.417229 | 3_4:-26578022 | None:intergenic |
TACATAGTGAAGGAAAGAAC+TGG | 0.419237 | 3_4:+26579907 | Msa0496200:CDS |
ACAAATTAGGTTTAGTGTAA+AGG | 0.426127 | 3_4:+26583482 | Msa0496200:three_prime_UTR |
AAATCAACCTGCCACTTTGT+AGG | 0.430518 | 3_4:+26583526 | Msa0496200:three_prime_UTR |
TATTATGAACCAAAGAGTTA+AGG | 0.431433 | 3_4:-26577699 | None:intergenic |
GTATCATACCTGTGAAAATT+GGG | 0.431802 | 3_4:-26579154 | None:intergenic |
AAGGTTGGTTGTTGATCCCT+TGG | 0.434839 | 3_4:-26579101 | None:intergenic |
TACAACTCATATTCAGCAAA+AGG | 0.439022 | 3_4:+26579123 | Msa0496200:CDS |
GAGGTGGAATTGCACCAATT+GGG | 0.439927 | 3_4:+26579971 | Msa0496200:CDS |
CACATGATGAAAATGAGAAC+TGG | 0.445604 | 3_4:+26579863 | Msa0496200:CDS |
AGGTTTAGTGTAAAGGTGGC+AGG | 0.450388 | 3_4:+26583489 | Msa0496200:three_prime_UTR |
CATCTTTCCCTATCTTCTCT+AGG | 0.450984 | 3_4:-26581189 | None:intergenic |
ACCACAACACCAAATGCAAA+TGG | 0.454821 | 3_4:+26583020 | Msa0496200:CDS |
CAGATAATTCTAGCTGGATA+AGG | 0.456631 | 3_4:+26580007 | Msa0496200:CDS |
ATCTCTAGCTTTATAGGGTA+AGG | 0.456668 | 3_4:-26579817 | None:intergenic |
ACATGGGGAGCAAGATCTAT+AGG | 0.460309 | 3_4:+26581892 | Msa0496200:CDS |
TTTGCTGAATATGAGTTGTA+AGG | 0.462311 | 3_4:-26579120 | None:intergenic |
GTGGGAGTAATCAAAGTGTT+AGG | 0.463827 | 3_4:+26580064 | Msa0496200:CDS |
TTAATTAAAGCTAATATCAA+TGG | 0.468078 | 3_4:+26581960 | Msa0496200:CDS |
ACCAAGCAATAATGCACAAA+TGG | 0.468883 | 3_4:+26582965 | Msa0496200:CDS |
CACAAAATGGGATGAGTTGG+AGG | 0.470432 | 3_4:+26582191 | Msa0496200:CDS |
TCCATTTGCATTTGGTGTTG+TGG | 0.474676 | 3_4:-26583021 | None:intergenic |
TTGGCTCAAGTACTCTCTGT+TGG | 0.478356 | 3_4:-26581994 | None:intergenic |
GCATATTGGATTCAGAAGAA+TGG | 0.478493 | 3_4:-26581934 | None:intergenic |
AATCAACCTGCCACTTTGTA+GGG | 0.485321 | 3_4:+26583527 | Msa0496200:three_prime_UTR |
CAATTCCACCTCTCATAGTA+AGG | 0.486241 | 3_4:-26579960 | None:intergenic |
AACATTGCTTTGTTAACTCA+AGG | 0.487994 | 3_4:+26582237 | Msa0496200:CDS |
CTGAATATGAGTTGTAAGGT+TGG | 0.491971 | 3_4:-26579116 | None:intergenic |
CCACCACAAAATGATGGCTA+AGG | 0.503068 | 3_4:+26581219 | Msa0496200:CDS |
TCTCTTCCCTACAAAGTGGC+AGG | 0.509034 | 3_4:-26583533 | None:intergenic |
TGGAGAAGCATACACAAAAT+GGG | 0.514297 | 3_4:+26582179 | Msa0496200:CDS |
CACACATCATCGCCAAGCAT+TGG | 0.517632 | 3_4:-26581163 | None:intergenic |
GATGAGTTGGAGGAAATTGA+TGG | 0.519901 | 3_4:+26582201 | Msa0496200:CDS |
AAACATCATCCACCAATGCT+TGG | 0.524035 | 3_4:+26581151 | Msa0496200:CDS |
ATTCTAGCTGGATAAGGAGC+AGG | 0.530678 | 3_4:+26580013 | Msa0496200:CDS |
TGGTTAGGTGAGTGAAGAGG+TGG | 0.534317 | 3_4:+26579013 | Msa0496200:intron |
GGTGCTTGGATTCTTAATGA+AGG | 0.535525 | 3_4:-26579080 | None:intergenic |
ACCTTCAAGTTCTGTCCCTA+GGG | 0.537786 | 3_4:+26583088 | Msa0496200:CDS |
TTCTCAGGTTCACAATCAGA+TGG | 0.540031 | 3_4:+26583056 | Msa0496200:CDS |
TGTGAACCTGAGAAGCCAAA+AGG | 0.541801 | 3_4:-26583047 | None:intergenic |
GTGAACTCTATGTCCCCAAT+TGG | 0.542652 | 3_4:-26579985 | None:intergenic |
CACCACAAAATGATGGCTAA+GGG | 0.548210 | 3_4:+26581220 | Msa0496200:CDS |
AGCTATATAGACAAATTGGT+TGG | 0.548813 | 3_4:+26582159 | Msa0496200:CDS |
AGATGTACTAATTTCGGACC+TGG | 0.551434 | 3_4:+26583138 | Msa0496200:exon |
AGTTCACAGATAATTCTAGC+TGG | 0.556731 | 3_4:+26580001 | Msa0496200:CDS |
ACATCATCGCCAAGCATTGG+TGG | 0.557359 | 3_4:-26581160 | None:intergenic |
ATACACAAAATGGGATGAGT+TGG | 0.560256 | 3_4:+26582188 | Msa0496200:CDS |
TCCCTAGGGACAGAACTTGA+AGG | 0.561736 | 3_4:-26583089 | None:intergenic |
CACCTTCAAGTTCTGTCCCT+AGG | 0.570752 | 3_4:+26583087 | Msa0496200:CDS |
GTGAACCCATTAATGTCCCT+AGG | 0.571248 | 3_4:-26583104 | None:intergenic |
CTAGAGAAGATAGGGAAAGA+TGG | 0.572158 | 3_4:+26581190 | Msa0496200:CDS |
GTTGCAGTTATGGTGAGTCG+TGG | 0.573264 | 3_4:+26580045 | Msa0496200:CDS |
TTCAATTCTCCAGAAAGTAA+TGG | 0.573973 | 3_4:-26579937 | None:intergenic |
TCTCAGGTTCACAATCAGAT+GGG | 0.579270 | 3_4:+26583057 | Msa0496200:CDS |
AGGTGGAATTGCACCAATTG+GGG | 0.581694 | 3_4:+26579972 | Msa0496200:CDS |
CAAAGTGTTAGGATTCAAGA+AGG | 0.583699 | 3_4:+26580075 | Msa0496200:CDS |
AATTAGGTTTAGTGTAAAGG+TGG | 0.585387 | 3_4:+26583485 | Msa0496200:three_prime_UTR |
AGTGCGTACGAAGCTAAAGA+AGG | 0.588133 | 3_4:-26577808 | None:intergenic |
CGGCCAAGATCTATTACAGC+AGG | 0.588370 | 3_4:+26583280 | Msa0496200:three_prime_UTR |
TGTGGCGCCTAGAGAAGATA+GGG | 0.589096 | 3_4:+26581182 | Msa0496200:CDS |
AGCTTTCCACCACAAAATGA+TGG | 0.589747 | 3_4:+26581213 | Msa0496200:CDS |
CTCAGCAATAGATTGGAGAT+CGG | 0.590476 | 3_4:+26583256 | Msa0496200:three_prime_UTR |
CAATGCTTGGCGATGATGTG+TGG | 0.590954 | 3_4:+26581164 | Msa0496200:CDS |
ATTCAATAAATACATAGTGA+AGG | 0.602832 | 3_4:+26579897 | Msa0496200:CDS |
TGAACCCATTAATGTCCCTA+GGG | 0.602842 | 3_4:-26583103 | None:intergenic |
GGTTTAGTGTAAAGGTGGCA+GGG | 0.605074 | 3_4:+26583490 | Msa0496200:three_prime_UTR |
TTGCAGTTATGGTGAGTCGT+GGG | 0.605352 | 3_4:+26580046 | Msa0496200:CDS |
GCAATAGATTGGAGATCGGA+CGG | 0.606836 | 3_4:+26583260 | Msa0496200:three_prime_UTR |
GAATTGAACCTTACTATGAG+AGG | 0.607156 | 3_4:+26579952 | Msa0496200:CDS |
TTGAACCTTACTATGAGAGG+TGG | 0.618381 | 3_4:+26579955 | Msa0496200:CDS |
ATTATCTCTTCCCTACAAAG+TGG | 0.620489 | 3_4:-26583537 | None:intergenic |
GGTGGCAGGGACTAATGTTG+TGG | 0.620928 | 3_4:+26583503 | Msa0496200:three_prime_UTR |
TCATACCTGTGAAAATTGGG+AGG | 0.624528 | 3_4:-26579151 | None:intergenic |
GCATGCAATGACTTGTGACA+TGG | 0.626229 | 3_4:+26581875 | Msa0496200:CDS |
AGTAGAATACTCGACGCTGA+AGG | 0.629771 | 3_4:+26579730 | Msa0496200:CDS |
CACAAATGGCTAGCAGTGAG+TGG | 0.632254 | 3_4:+26582979 | Msa0496200:CDS |
ATTTGGTTAGGTGAGTGAAG+AGG | 0.632675 | 3_4:+26579010 | Msa0496200:intron |
ACATAGTGAAGGAAAGAACT+GGG | 0.634050 | 3_4:+26579908 | Msa0496200:CDS |
ATTAAGAATCCAAGCACCAA+GGG | 0.638386 | 3_4:+26579085 | Msa0496200:CDS |
CATACCTGTGAAAATTGGGA+GGG | 0.639003 | 3_4:-26579150 | None:intergenic |
ATAGGTAAGCTACGTAAGAG+TGG | 0.643477 | 3_4:+26583367 | Msa0496200:three_prime_UTR |
CATTAAGAATCCAAGCACCA+AGG | 0.647255 | 3_4:+26579084 | Msa0496200:CDS |
CTCAGGTTCACAATCAGATG+GGG | 0.648069 | 3_4:+26583058 | Msa0496200:CDS |
GGGACATTAATGGGTTCACA+AGG | 0.658302 | 3_4:+26583108 | Msa0496200:CDS |
ACCACAAAATGATGGCTAAG+GGG | 0.658660 | 3_4:+26581221 | Msa0496200:CDS |
AGCAAGATCTATAGGTACCG+TGG | 0.658732 | 3_4:+26581900 | Msa0496200:CDS |
GAATGGTAAACTGAGGTCCA+CGG | 0.664053 | 3_4:-26581917 | None:intergenic |
GGTGACCTATTGATGGAAGG+TGG | 0.664907 | 3_4:-26579059 | None:intergenic |
TGATACTCCAAAGCTAAGAG+AGG | 0.665341 | 3_4:+26581282 | Msa0496200:CDS |
CATGCAATGACTTGTGACAT+GGG | 0.667953 | 3_4:+26581876 | Msa0496200:CDS |
TTCAGAAGAATGGTAAACTG+AGG | 0.674138 | 3_4:-26581924 | None:intergenic |
GAAGGTGACCTATTGATGGA+AGG | 0.674542 | 3_4:-26579062 | None:intergenic |
TGGGGATGTCTGATAGAATG+TGG | 0.679640 | 3_4:+26581838 | Msa0496200:CDS |
TTTGTTGTTAAGGATCATCG+TGG | 0.682651 | 3_4:+26580111 | Msa0496200:CDS |
GATTCAAGAAGGCATGACTG+AGG | 0.696401 | 3_4:+26580086 | Msa0496200:CDS |
ATGCAATGACTTGTGACATG+GGG | 0.729736 | 3_4:+26581877 | Msa0496200:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGATATTATCTTAAAATTTA+AGG | + | chr3_4:26578364-26578383 | Msa0496200:intron | 10.0% |
!!! | TAATATGATTCTTTAAAAAA+TGG | + | chr3_4:26578393-26578412 | Msa0496200:intron | 10.0% |
!!! | TTTTTATTAAAAATGGTAAA+AGG | - | chr3_4:26578431-26578450 | None:intergenic | 10.0% |
!!! | TTTTAAGATACTTAATAAAA+TGG | - | chr3_4:26582753-26582772 | None:intergenic | 10.0% |
!!! | TAATAACACTTTTGAAAAAA+TGG | + | chr3_4:26577717-26577736 | Msa0496200:exon | 15.0% |
!! | ATACAAATATATTGTTTGTT+GGG | - | chr3_4:26578224-26578243 | None:intergenic | 15.0% |
!! | TATACAAATATATTGTTTGT+TGG | - | chr3_4:26578225-26578244 | None:intergenic | 15.0% |
!!! | AATTTTAAGGTTGTTTAATA+TGG | - | chr3_4:26578534-26578553 | None:intergenic | 15.0% |
!! | ACTTTATTATATGATTCATT+TGG | + | chr3_4:26578993-26579012 | Msa0496200:intron | 15.0% |
!!! | TTTTGTTTTTTTAACTCTAA+TGG | - | chr3_4:26579522-26579541 | None:intergenic | 15.0% |
!!! | ATAAATTTGGTAATCAAATT+TGG | - | chr3_4:26579625-26579644 | None:intergenic | 15.0% |
!! | CATCTTATTAATATGTTTAA+GGG | - | chr3_4:26580513-26580532 | None:intergenic | 15.0% |
!! | TTAACATGTATATATCATTA+GGG | - | chr3_4:26580661-26580680 | None:intergenic | 15.0% |
!! | TTATATTTAGTATTTACAGA+AGG | + | chr3_4:26580903-26580922 | Msa0496200:intron | 15.0% |
!! | AGGTATATATCTTTATAATT+AGG | + | chr3_4:26581302-26581321 | Msa0496200:intron | 15.0% |
!! | GGTATATATCTTTATAATTA+GGG | + | chr3_4:26581303-26581322 | Msa0496200:intron | 15.0% |
!! | GTATATATCTTTATAATTAG+GGG | + | chr3_4:26581304-26581323 | Msa0496200:intron | 15.0% |
!! | TTAATTAAAGCTAATATCAA+TGG | + | chr3_4:26581960-26581979 | Msa0496200:CDS | 15.0% |
!!! | GTTAATATGAACTTAATTTT+AGG | + | chr3_4:26582831-26582850 | Msa0496200:intron | 15.0% |
!! | TAAAATTTGTAGGAATTTAA+TGG | - | chr3_4:26583332-26583351 | None:intergenic | 15.0% |
!! | TTATAGTAAGCAAATATAAT+AGG | + | chr3_4:26583349-26583368 | Msa0496200:three_prime_UTR | 15.0% |
!! | ATATATCATGCATAAGAATA+AGG | - | chr3_4:26577946-26577965 | None:intergenic | 20.0% |
!! | ATGATATATTGAATTCTTCT+TGG | + | chr3_4:26577957-26577976 | Msa0496200:intron | 20.0% |
!!! | ATACATATTTGAAGTTAATG+TGG | + | chr3_4:26578142-26578161 | Msa0496200:intron | 20.0% |
!!! | TGTACAAAAATATTGTTGTT+AGG | + | chr3_4:26578319-26578338 | Msa0496200:intron | 20.0% |
!! | ATTATATGATTCATTTGGTT+AGG | + | chr3_4:26578998-26579017 | Msa0496200:intron | 20.0% |
!!! | TTGATTTGTAAAATTGTTTC+TGG | + | chr3_4:26579278-26579297 | Msa0496200:intron | 20.0% |
!!! | TGATTTGTAAAATTGTTTCT+GGG | + | chr3_4:26579279-26579298 | Msa0496200:intron | 20.0% |
!!! | TTTTTGTCTTGTATGATTTT+TGG | - | chr3_4:26579405-26579424 | None:intergenic | 20.0% |
!!! | AATGACGAAAAGTATAAATT+TGG | - | chr3_4:26579638-26579657 | None:intergenic | 20.0% |
!! | ATTCAATAAATACATAGTGA+AGG | + | chr3_4:26579897-26579916 | Msa0496200:CDS | 20.0% |
!! | TAGCATGATATATTATTGAT+TGG | + | chr3_4:26580213-26580232 | Msa0496200:intron | 20.0% |
!!! | ATTTAGTTGAAATTTTTGCT+CGG | - | chr3_4:26580323-26580342 | None:intergenic | 20.0% |
!! | TTAATATCTTCAACTAACTT+TGG | + | chr3_4:26580466-26580485 | Msa0496200:intron | 20.0% |
!! | CCATCTTATTAATATGTTTA+AGG | - | chr3_4:26580514-26580533 | None:intergenic | 20.0% |
!! | CCTTAAACATATTAATAAGA+TGG | + | chr3_4:26580511-26580530 | Msa0496200:intron | 20.0% |
!! | CTTAACATGTATATATCATT+AGG | - | chr3_4:26580662-26580681 | None:intergenic | 20.0% |
!! | CTAATGATATATACATGTTA+AGG | + | chr3_4:26580660-26580679 | Msa0496200:intron | 20.0% |
!!! | GTTCATTAACATTTGTTTTT+AGG | + | chr3_4:26580772-26580791 | Msa0496200:intron | 20.0% |
!!! | TCTTTATGCTAATTTTGTTT+AGG | + | chr3_4:26581366-26581385 | Msa0496200:intron | 20.0% |
!! | AAGAAATTGATCTTGTATAA+TGG | - | chr3_4:26581485-26581504 | None:intergenic | 20.0% |
!!! | TAAGTTTAAGTTCAAATTTG+AGG | - | chr3_4:26581525-26581544 | None:intergenic | 20.0% |
!! | TAACTCGTTTGTTTATTTAA+AGG | + | chr3_4:26581554-26581573 | Msa0496200:intron | 20.0% |
!!! | ATTTATCTGAAATCAGATTT+TGG | + | chr3_4:26581812-26581831 | Msa0496200:intron | 20.0% |
!!! | TTTATCTGAAATCAGATTTT+GGG | + | chr3_4:26581813-26581832 | Msa0496200:intron | 20.0% |
!!! | GCTTTAATTAATTTGCATAT+TGG | - | chr3_4:26581951-26581970 | None:intergenic | 20.0% |
!! | TATATTGTACCTTATTCATT+TGG | - | chr3_4:26582016-26582035 | None:intergenic | 20.0% |
!! | TTACATTATATGCTAGATAT+TGG | + | chr3_4:26582089-26582108 | Msa0496200:intron | 20.0% |
!! | TATCATCAGAATCAATATTA+TGG | + | chr3_4:26582909-26582928 | Msa0496200:CDS | 20.0% |
!! | AACTTTAGATGTACTAATTT+CGG | + | chr3_4:26583132-26583151 | Msa0496200:exon | 20.0% |
!! | TTGCTTACTATAAAATTTGT+AGG | - | chr3_4:26583342-26583361 | None:intergenic | 20.0% |
! | TATTATGAACCAAAGAGTTA+AGG | - | chr3_4:26577702-26577721 | None:intergenic | 25.0% |
!!! | CTTACAACTCTTTTAAGAAA+AGG | - | chr3_4:26578044-26578063 | None:intergenic | 25.0% |
! | GTCATCTCTTAATTCTTATT+AGG | - | chr3_4:26578202-26578221 | None:intergenic | 25.0% |
! | ATCAAATATTTACAGTCATG+TGG | - | chr3_4:26578348-26578367 | None:intergenic | 25.0% |
!! | CTCAAGACTCATAAATTTTA+AGG | - | chr3_4:26578547-26578566 | None:intergenic | 25.0% |
! | AATTGGAGATTTCATATTGA+CGG | - | chr3_4:26578623-26578642 | None:intergenic | 25.0% |
!! | CAAATCAAACATTTTACAAC+TGG | - | chr3_4:26579266-26579285 | None:intergenic | 25.0% |
! | AATCAAATTTGGCATCTTTA+TGG | - | chr3_4:26579614-26579633 | None:intergenic | 25.0% |
!! | TTTAGTTGAAATTTTTGCTC+GGG | - | chr3_4:26580322-26580341 | None:intergenic | 25.0% |
! | AGTATAATGCCACAATAAAA+GGG | - | chr3_4:26580394-26580413 | None:intergenic | 25.0% |
! | TCTATAGTACAACTAAAAGT+GGG | - | chr3_4:26580539-26580558 | None:intergenic | 25.0% |
! | TGTACTATAGACTATGAAAT+AGG | + | chr3_4:26580548-26580567 | Msa0496200:intron | 25.0% |
! | TACATGTTAAGGAATCTAAA+AGG | + | chr3_4:26580671-26580690 | Msa0496200:intron | 25.0% |
! | AACATTTGTCTTTGTATAAG+AGG | + | chr3_4:26580804-26580823 | Msa0496200:intron | 25.0% |
! | ACATTTGTCTTTGTATAAGA+GGG | + | chr3_4:26580805-26580824 | Msa0496200:intron | 25.0% |
!!! | GTCCTCTAATTCATTTTAAT+TGG | + | chr3_4:26582111-26582130 | Msa0496200:intron | 25.0% |
! | CACCAATTAAAATGAATTAG+AGG | - | chr3_4:26582116-26582135 | None:intergenic | 25.0% |
!! | CTATATAGCTCTACAAATTT+AGG | - | chr3_4:26582149-26582168 | None:intergenic | 25.0% |
! | TCAGACGATCAATTAAAATT+TGG | - | chr3_4:26582540-26582559 | None:intergenic | 25.0% |
! | ATTCAACATATTGGTCATAT+CGG | - | chr3_4:26582580-26582599 | None:intergenic | 25.0% |
! | AATTCACACATTCAACATAT+TGG | - | chr3_4:26582589-26582608 | None:intergenic | 25.0% |
!! | CTAGCAATATTTTCTATAGA+TGG | - | chr3_4:26582939-26582958 | None:intergenic | 25.0% |
! | GAATTTAATGGAATAGGATT+AGG | - | chr3_4:26583320-26583339 | None:intergenic | 25.0% |
! | TTGTAGGAATTTAATGGAAT+AGG | - | chr3_4:26583326-26583345 | None:intergenic | 25.0% |
! | GACTTTGACACATTATTTAT+GGG | - | chr3_4:26583395-26583414 | None:intergenic | 25.0% |
! | TGACTTTGACACATTATTTA+TGG | - | chr3_4:26583396-26583415 | None:intergenic | 25.0% |
! | ATAATGTGTCAAAGTCAAAA+TGG | + | chr3_4:26583399-26583418 | Msa0496200:three_prime_UTR | 25.0% |
! | GCATTGAAGATAAACAAATT+AGG | + | chr3_4:26583469-26583488 | Msa0496200:three_prime_UTR | 25.0% |
! | ACAAATTAGGTTTAGTGTAA+AGG | + | chr3_4:26583482-26583501 | Msa0496200:three_prime_UTR | 25.0% |
ACATCAAAACCTTAACTCTT+TGG | + | chr3_4:26577690-26577709 | Msa0496200:five_prime_UTR | 30.0% | |
TTGAAAAAATGGCTACCAAA+AGG | + | chr3_4:26577728-26577747 | Msa0496200:exon | 30.0% | |
TGAAAAAATGGCTACCAAAA+GGG | + | chr3_4:26577729-26577748 | Msa0496200:exon | 30.0% | |
! | AGAATCATCAAAAACCCTTT+TGG | - | chr3_4:26577746-26577765 | None:intergenic | 30.0% |
!!! | GTAGATAGTAGTTTTTTGCA+TGG | - | chr3_4:26577894-26577913 | None:intergenic | 30.0% |
AACCTAGCTTATGAAAATTG+AGG | + | chr3_4:26578280-26578299 | Msa0496200:intron | 30.0% | |
ACCTAGCTTATGAAAATTGA+GGG | + | chr3_4:26578281-26578300 | Msa0496200:intron | 30.0% | |
AAGGTTGTTTAATATGGATC+CGG | - | chr3_4:26578528-26578547 | None:intergenic | 30.0% | |
ATTGCAGTTAATTACAAGTG+AGG | - | chr3_4:26578586-26578605 | None:intergenic | 30.0% | |
TTAATGCAAGCTTCATAGTT+AGG | - | chr3_4:26578887-26578906 | None:intergenic | 30.0% | |
TTTGCTGAATATGAGTTGTA+AGG | - | chr3_4:26579123-26579142 | None:intergenic | 30.0% | |
TACAACTCATATTCAGCAAA+AGG | + | chr3_4:26579123-26579142 | Msa0496200:CDS | 30.0% | |
GTATCATACCTGTGAAAATT+GGG | - | chr3_4:26579157-26579176 | None:intergenic | 30.0% | |
AGTATCATACCTGTGAAAAT+TGG | - | chr3_4:26579158-26579177 | None:intergenic | 30.0% | |
!! | TTGTCTTGTATGATTTTTGG+TGG | - | chr3_4:26579402-26579421 | None:intergenic | 30.0% |
TTCTACTACCTGTGAAAATT+GGG | - | chr3_4:26579717-26579736 | None:intergenic | 30.0% | |
ATTCTACTACCTGTGAAAAT+TGG | - | chr3_4:26579718-26579737 | None:intergenic | 30.0% | |
TCAACAAGACTTATGCTTAT+AGG | - | chr3_4:26579760-26579779 | None:intergenic | 30.0% | |
!! | CTACAATCTCTAGCTTTATA+GGG | - | chr3_4:26579825-26579844 | None:intergenic | 30.0% |
!! | ACTACAATCTCTAGCTTTAT+AGG | - | chr3_4:26579826-26579845 | None:intergenic | 30.0% |
TTCAATTCTCCAGAAAGTAA+TGG | - | chr3_4:26579940-26579959 | None:intergenic | 30.0% | |
CAGTATAATGCCACAATAAA+AGG | - | chr3_4:26580395-26580414 | None:intergenic | 30.0% | |
TATTGTGGCATTATACTGTT+CGG | + | chr3_4:26580397-26580416 | Msa0496200:intron | 30.0% | |
CTATAGTACAACTAAAAGTG+GGG | - | chr3_4:26580538-26580557 | None:intergenic | 30.0% | |
GTCTATAGTACAACTAAAAG+TGG | - | chr3_4:26580540-26580559 | None:intergenic | 30.0% | |
! | CATTTTATAGCTGCTAGTTA+AGG | + | chr3_4:26580608-26580627 | Msa0496200:intron | 30.0% |
! | AGAGGGTAAATGATTTTTGT+TGG | + | chr3_4:26580822-26580841 | Msa0496200:intron | 30.0% |
TGTTGGTGTAGTTTAGTTAT+TGG | + | chr3_4:26580839-26580858 | Msa0496200:intron | 30.0% | |
GTTGGTGTAGTTTAGTTATT+GGG | + | chr3_4:26580840-26580859 | Msa0496200:intron | 30.0% | |
ATATATACCTCTCTTAGCTT+TGG | - | chr3_4:26581292-26581311 | None:intergenic | 30.0% | |
TTAGCATAAAGATAGACTCT+AGG | - | chr3_4:26581358-26581377 | None:intergenic | 30.0% | |
TGCTCTTATGATACATGTTA+AGG | + | chr3_4:26581590-26581609 | Msa0496200:intron | 30.0% | |
ATGCTAATTGCACATGTTAA+AGG | - | chr3_4:26581722-26581741 | None:intergenic | 30.0% | |
! | TGTAGTCTTACTTTACTTTG+TGG | + | chr3_4:26582065-26582084 | Msa0496200:intron | 30.0% |
! | TAGCTCTACAAATTTAGGAA+TGG | - | chr3_4:26582144-26582163 | None:intergenic | 30.0% |
GTAGAGCTATATAGACAAAT+TGG | + | chr3_4:26582155-26582174 | Msa0496200:intron | 30.0% | |
AGCTATATAGACAAATTGGT+TGG | + | chr3_4:26582159-26582178 | Msa0496200:CDS | 30.0% | |
! | AACATTGCTTTGTTAACTCA+AGG | + | chr3_4:26582237-26582256 | Msa0496200:CDS | 30.0% |
ATAAGATCATATACTGCTAC+TGG | + | chr3_4:26582367-26582386 | Msa0496200:intron | 30.0% | |
!! | GATGACTTAGTTTTTGAACT+AGG | + | chr3_4:26582483-26582502 | Msa0496200:intron | 30.0% |
!! | AATTAGATTTGGATTTGCTG+CGG | - | chr3_4:26582618-26582637 | None:intergenic | 30.0% |
! | TGCACAAGTTGAATTAGATT+TGG | - | chr3_4:26582629-26582648 | None:intergenic | 30.0% |
!! | AATTTTAGGTGATCAAACTG+TGG | + | chr3_4:26582845-26582864 | Msa0496200:intron | 30.0% |
AAAGGAAATCCATTTGCATT+TGG | - | chr3_4:26583032-26583051 | None:intergenic | 30.0% | |
!! | AATGCAAATGGATTTCCTTT+TGG | + | chr3_4:26583032-26583051 | Msa0496200:CDS | 30.0% |
TTCAACAGCTCAGATTTATT+TGG | + | chr3_4:26583214-26583233 | Msa0496200:three_prime_UTR | 30.0% | |
TGAGATCAAACTGTGAAAAA+TGG | - | chr3_4:26583240-26583259 | None:intergenic | 30.0% | |
! | AAAAGAAGTTGCTTTGATCT+TGG | + | chr3_4:26583423-26583442 | Msa0496200:three_prime_UTR | 30.0% |
! | AAAGAAGTTGCTTTGATCTT+GGG | + | chr3_4:26583424-26583443 | Msa0496200:three_prime_UTR | 30.0% |
AATTAGGTTTAGTGTAAAGG+TGG | + | chr3_4:26583485-26583504 | Msa0496200:three_prime_UTR | 30.0% | |
! | CAAAACATGCAGAACCTTTT+AGG | + | chr3_4:26578008-26578027 | Msa0496200:CDS | 35.0% |
!! | TGTGGTTAACTTGTTTCTCA+TGG | + | chr3_4:26578160-26578179 | Msa0496200:intron | 35.0% |
!! | GTGGTTAACTTGTTTCTCAT+GGG | + | chr3_4:26578161-26578180 | Msa0496200:intron | 35.0% |
!! | TAACTTGTTTCTCATGGGTT+AGG | + | chr3_4:26578166-26578185 | Msa0496200:intron | 35.0% |
! | AACTTGTTTCTCATGGGTTA+GGG | + | chr3_4:26578167-26578186 | Msa0496200:intron | 35.0% |
! | ACCCTCAATTTTCATAAGCT+AGG | - | chr3_4:26578285-26578304 | None:intergenic | 35.0% |
AAGATGGTCCAATGTTAAAC+CGG | + | chr3_4:26578506-26578525 | Msa0496200:intron | 35.0% | |
ATATGGATCCGGTTTAACAT+TGG | - | chr3_4:26578517-26578536 | None:intergenic | 35.0% | |
AAAACCAAAATTCTTGGTCC+TGG | - | chr3_4:26578679-26578698 | None:intergenic | 35.0% | |
!!! | AGGACCAAGAATTTTGGTTT+TGG | + | chr3_4:26578678-26578697 | Msa0496200:intron | 35.0% |
GTGACCAAAACCAAAATTCT+TGG | - | chr3_4:26578685-26578704 | None:intergenic | 35.0% | |
AAGAGAGAAGAGAGAGAAAA+TGG | - | chr3_4:26578751-26578770 | None:intergenic | 35.0% | |
TTGTGGTATGAATAGCTATG+CGG | - | chr3_4:26578851-26578870 | None:intergenic | 35.0% | |
!!! | TAGGTGAAGTTGGTTTTTTG+TGG | - | chr3_4:26578868-26578887 | None:intergenic | 35.0% |
TAATGAAGGTGACCTATTGA+TGG | - | chr3_4:26579069-26579088 | None:intergenic | 35.0% | |
ATTAAGAATCCAAGCACCAA+GGG | + | chr3_4:26579085-26579104 | Msa0496200:CDS | 35.0% | |
CTGAATATGAGTTGTAAGGT+TGG | - | chr3_4:26579119-26579138 | None:intergenic | 35.0% | |
CACAGGTATGATACTTACAT+TGG | + | chr3_4:26579163-26579182 | Msa0496200:intron | 35.0% | |
AGATCAGATCTTGTAGAATG+GGG | - | chr3_4:26579213-26579232 | None:intergenic | 35.0% | |
CAGATCAGATCTTGTAGAAT+GGG | - | chr3_4:26579214-26579233 | None:intergenic | 35.0% | |
ACAGATCAGATCTTGTAGAA+TGG | - | chr3_4:26579215-26579234 | None:intergenic | 35.0% | |
! | ATTTGCTAAACGGTATGTAC+CGG | - | chr3_4:26579491-26579510 | None:intergenic | 35.0% |
!! | GGTGTGTTTGATTTGCTAAA+CGG | - | chr3_4:26579501-26579520 | None:intergenic | 35.0% |
GTTAGCGACTAAATTAGAGA+TGG | - | chr3_4:26579592-26579611 | None:intergenic | 35.0% | |
!! | GAAGACTTGTTGGAACAATT+TGG | - | chr3_4:26579798-26579817 | None:intergenic | 35.0% |
!! | ATCTCTAGCTTTATAGGGTA+AGG | - | chr3_4:26579820-26579839 | None:intergenic | 35.0% |
CACATGATGAAAATGAGAAC+TGG | + | chr3_4:26579863-26579882 | Msa0496200:CDS | 35.0% | |
TACATAGTGAAGGAAAGAAC+TGG | + | chr3_4:26579907-26579926 | Msa0496200:CDS | 35.0% | |
ACATAGTGAAGGAAAGAACT+GGG | + | chr3_4:26579908-26579927 | Msa0496200:CDS | 35.0% | |
GAATTGAACCTTACTATGAG+AGG | + | chr3_4:26579952-26579971 | Msa0496200:CDS | 35.0% | |
AGTTCACAGATAATTCTAGC+TGG | + | chr3_4:26580001-26580020 | Msa0496200:CDS | 35.0% | |
! | CAGATAATTCTAGCTGGATA+AGG | + | chr3_4:26580007-26580026 | Msa0496200:CDS | 35.0% |
! | CAAAGTGTTAGGATTCAAGA+AGG | + | chr3_4:26580075-26580094 | Msa0496200:CDS | 35.0% |
!! | TTTGTTGTTAAGGATCATCG+TGG | + | chr3_4:26580111-26580130 | Msa0496200:CDS | 35.0% |
!! | ATTTCGGGATTGCTATTTGT+CGG | - | chr3_4:26580296-26580315 | None:intergenic | 35.0% |
! | ATTTTTGCTCGGGATGATTT+CGG | - | chr3_4:26580312-26580331 | None:intergenic | 35.0% |
!! | GGAGGGTATTGTTGTAATTA+AGG | - | chr3_4:26580354-26580373 | None:intergenic | 35.0% |
TAATGCCACAATAAAAGGGA+GGG | - | chr3_4:26580390-26580409 | None:intergenic | 35.0% | |
ATAATGCCACAATAAAAGGG+AGG | - | chr3_4:26580391-26580410 | None:intergenic | 35.0% | |
ATTGTGGCATTATACTGTTC+GGG | + | chr3_4:26580398-26580417 | Msa0496200:intron | 35.0% | |
!! | CATTGCTATTTGTCTCGAAA+TGG | - | chr3_4:26580440-26580459 | None:intergenic | 35.0% |
! | TTGTTGCGACACATTTTTGT+AGG | - | chr3_4:26580940-26580959 | None:intergenic | 35.0% |
! | TATAAGCATTTTTGCCTGTC+AGG | + | chr3_4:26581007-26581026 | Msa0496200:intron | 35.0% |
ACTACACTATAATTCCTGAC+AGG | - | chr3_4:26581024-26581043 | None:intergenic | 35.0% | |
! | AAGATAGACTCTAGGAAATG+TGG | - | chr3_4:26581350-26581369 | None:intergenic | 35.0% |
! | TGAAATCAGATTTTGGGCAT+GGG | + | chr3_4:26581819-26581838 | Msa0496200:intron | 35.0% |
TTCAGAAGAATGGTAAACTG+AGG | - | chr3_4:26581927-26581946 | None:intergenic | 35.0% | |
GCATATTGGATTCAGAAGAA+TGG | - | chr3_4:26581937-26581956 | None:intergenic | 35.0% | |
GTACTTGAGCCAAATGAATA+AGG | + | chr3_4:26582004-26582023 | Msa0496200:CDS | 35.0% | |
! | TTGGAGAAGCATACACAAAA+TGG | + | chr3_4:26582178-26582197 | Msa0496200:CDS | 35.0% |
! | TGGAGAAGCATACACAAAAT+GGG | + | chr3_4:26582179-26582198 | Msa0496200:CDS | 35.0% |
ATACACAAAATGGGATGAGT+TGG | + | chr3_4:26582188-26582207 | Msa0496200:CDS | 35.0% | |
ATGTCAACTATGTGAAGACA+TGG | - | chr3_4:26582438-26582457 | None:intergenic | 35.0% | |
! | CATATTGGTCATATCGGTTA+AGG | - | chr3_4:26582574-26582593 | None:intergenic | 35.0% |
ACCAAGCAATAATGCACAAA+TGG | + | chr3_4:26582965-26582984 | Msa0496200:CDS | 35.0% | |
GTTTGATCTCAGCAATAGAT+TGG | + | chr3_4:26583249-26583268 | Msa0496200:three_prime_UTR | 35.0% | |
AAGGTTCCAAAGCTCCTAAA+AGG | - | chr3_4:26578025-26578044 | None:intergenic | 40.0% | |
TGCATCTGTGTCAAATGTCA+GGG | - | chr3_4:26578082-26578101 | None:intergenic | 40.0% | |
ATGCATCTGTGTCAAATGTC+AGG | - | chr3_4:26578083-26578102 | None:intergenic | 40.0% | |
GTGACCAAATACAACTTGTG+TGG | + | chr3_4:26578797-26578816 | Msa0496200:intron | 40.0% | |
TGGTCCACACAAGTTGTATT+TGG | - | chr3_4:26578804-26578823 | None:intergenic | 40.0% | |
GAGAAAATCTTGTGTGGTCT+TGG | - | chr3_4:26578824-26578843 | None:intergenic | 40.0% | |
GCTTCATAGTTAGGTGAAGT+TGG | - | chr3_4:26578878-26578897 | None:intergenic | 40.0% | |
ATTTGGTTAGGTGAGTGAAG+AGG | + | chr3_4:26579010-26579029 | Msa0496200:intron | 40.0% | |
GGTGCTTGGATTCTTAATGA+AGG | - | chr3_4:26579083-26579102 | None:intergenic | 40.0% | |
CATTAAGAATCCAAGCACCA+AGG | + | chr3_4:26579084-26579103 | Msa0496200:CDS | 40.0% | |
CATACCTGTGAAAATTGGGA+GGG | - | chr3_4:26579153-26579172 | None:intergenic | 40.0% | |
TCATACCTGTGAAAATTGGG+AGG | - | chr3_4:26579154-26579173 | None:intergenic | 40.0% | |
! | AACTTCGTCCCAATTTTCAC+AGG | + | chr3_4:26579706-26579725 | Msa0496200:intron | 40.0% |
ATAGGGTAAGGAAGACTTGT+TGG | - | chr3_4:26579808-26579827 | None:intergenic | 40.0% | |
CTAGAGATTGTAGTGCTTGA+TGG | + | chr3_4:26579832-26579851 | Msa0496200:CDS | 40.0% | |
TTGAACCTTACTATGAGAGG+TGG | + | chr3_4:26579955-26579974 | Msa0496200:CDS | 40.0% | |
CAATTCCACCTCTCATAGTA+AGG | - | chr3_4:26579963-26579982 | None:intergenic | 40.0% | |
GATAAGGAGCAGGAAGTTTA+GGG | + | chr3_4:26580023-26580042 | Msa0496200:CDS | 40.0% | |
! | GAAGTTTAGGGTTGCAGTTA+TGG | + | chr3_4:26580035-26580054 | Msa0496200:CDS | 40.0% |
! | GTGGGAGTAATCAAAGTGTT+AGG | + | chr3_4:26580064-26580083 | Msa0496200:CDS | 40.0% |
!! | GACTGAGGCATTTGTTGTTA+AGG | + | chr3_4:26580101-26580120 | Msa0496200:CDS | 40.0% |
!! | TTTCGGGATTGCTATTTGTC+GGG | - | chr3_4:26580295-26580314 | None:intergenic | 40.0% |
! | TTTTTGCTCGGGATGATTTC+GGG | - | chr3_4:26580311-26580330 | None:intergenic | 40.0% |
AATACCCTCCCATGTATTGT+GGG | + | chr3_4:26580364-26580383 | Msa0496200:intron | 40.0% | |
TATACTGTTCGGGAATGCAT+CGG | + | chr3_4:26580408-26580427 | Msa0496200:intron | 40.0% | |
AAACATCATCCACCAATGCT+TGG | + | chr3_4:26581151-26581170 | Msa0496200:CDS | 40.0% | |
CATCTTTCCCTATCTTCTCT+AGG | - | chr3_4:26581192-26581211 | None:intergenic | 40.0% | |
CTAGAGAAGATAGGGAAAGA+TGG | + | chr3_4:26581190-26581209 | Msa0496200:CDS | 40.0% | |
AGCTTTCCACCACAAAATGA+TGG | + | chr3_4:26581213-26581232 | Msa0496200:CDS | 40.0% | |
CACCACAAAATGATGGCTAA+GGG | + | chr3_4:26581220-26581239 | Msa0496200:CDS | 40.0% | |
ACCACAAAATGATGGCTAAG+GGG | + | chr3_4:26581221-26581240 | Msa0496200:CDS | 40.0% | |
TGATACTCCAAAGCTAAGAG+AGG | + | chr3_4:26581282-26581301 | Msa0496200:CDS | 40.0% | |
! | CTGAAATCAGATTTTGGGCA+TGG | + | chr3_4:26581818-26581837 | Msa0496200:intron | 40.0% |
! | GAAATCAGATTTTGGGCATG+GGG | + | chr3_4:26581820-26581839 | Msa0496200:intron | 40.0% |
! | CATGCAATGACTTGTGACAT+GGG | + | chr3_4:26581876-26581895 | Msa0496200:CDS | 40.0% |
! | ATGCAATGACTTGTGACATG+GGG | + | chr3_4:26581877-26581896 | Msa0496200:CDS | 40.0% |
TGTGAGTCTTGAGTAGTAGA+TGG | - | chr3_4:26582043-26582062 | None:intergenic | 40.0% | |
! | GATGAGTTGGAGGAAATTGA+TGG | + | chr3_4:26582201-26582220 | Msa0496200:CDS | 40.0% |
GATCATATACTGCTACTGGT+TGG | + | chr3_4:26582371-26582390 | Msa0496200:intron | 40.0% | |
ACTGTTGCTGGATGATTGTT+TGG | - | chr3_4:26582879-26582898 | None:intergenic | 40.0% | |
TATGTTGTTGCTACTGTTGC+TGG | - | chr3_4:26582891-26582910 | None:intergenic | 40.0% | |
GCCATTTGTGCATTATTGCT+TGG | - | chr3_4:26582969-26582988 | None:intergenic | 40.0% | |
!! | TGCATTTGGTGTTGTGGTAT+AGG | - | chr3_4:26583018-26583037 | None:intergenic | 40.0% |
ACCACAACACCAAATGCAAA+TGG | + | chr3_4:26583020-26583039 | Msa0496200:CDS | 40.0% | |
!! | TCCATTTGCATTTGGTGTTG+TGG | - | chr3_4:26583024-26583043 | None:intergenic | 40.0% |
TTCTCAGGTTCACAATCAGA+TGG | + | chr3_4:26583056-26583075 | Msa0496200:CDS | 40.0% | |
TCTCAGGTTCACAATCAGAT+GGG | + | chr3_4:26583057-26583076 | Msa0496200:CDS | 40.0% | |
TGAACCCATTAATGTCCCTA+GGG | - | chr3_4:26583106-26583125 | None:intergenic | 40.0% | |
AGATGTACTAATTTCGGACC+TGG | + | chr3_4:26583138-26583157 | Msa0496200:exon | 40.0% | |
CTCAGCAATAGATTGGAGAT+CGG | + | chr3_4:26583256-26583275 | Msa0496200:three_prime_UTR | 40.0% | |
ATAGGTAAGCTACGTAAGAG+TGG | + | chr3_4:26583367-26583386 | Msa0496200:three_prime_UTR | 40.0% | |
GGTCTCATTCGTTTGTCGTT+TGG | - | chr3_4:26577790-26577809 | None:intergenic | 45.0% | |
AGTGCGTACGAAGCTAAAGA+AGG | - | chr3_4:26577811-26577830 | None:intergenic | 45.0% | |
!! | GCAGAACCTTTTAGGAGCTT+TGG | + | chr3_4:26578016-26578035 | Msa0496200:CDS | 45.0% |
!! | TGTTTCTCATGGGTTAGGGT+TGG | + | chr3_4:26578171-26578190 | Msa0496200:intron | 45.0% |
!! | GTTTCTCATGGGTTAGGGTT+GGG | + | chr3_4:26578172-26578191 | Msa0496200:intron | 45.0% |
!! | TTTCTCATGGGTTAGGGTTG+GGG | + | chr3_4:26578173-26578192 | Msa0496200:intron | 45.0% |
TCCACACAAGTGTTTCTCTG+CGG | - | chr3_4:26578656-26578675 | None:intergenic | 45.0% | |
! | TGGACCAGGACCAAGAATTT+TGG | + | chr3_4:26578672-26578691 | Msa0496200:intron | 45.0% |
GAGAGAAGAGAAGAGAGAGA+AGG | - | chr3_4:26578724-26578743 | None:intergenic | 45.0% | |
GGAGACGAGAAAATCTTGTG+TGG | - | chr3_4:26578830-26578849 | None:intergenic | 45.0% | |
GAAGAGGTGGATAGAGCAAT+TGG | + | chr3_4:26579026-26579045 | Msa0496200:CDS | 45.0% | |
GCTTTCCACCTTCCATCAAT+AGG | + | chr3_4:26579054-26579073 | Msa0496200:CDS | 45.0% | |
GAAGGTGACCTATTGATGGA+AGG | - | chr3_4:26579065-26579084 | None:intergenic | 45.0% | |
! | AAGGTTGGTTGTTGATCCCT+TGG | - | chr3_4:26579104-26579123 | None:intergenic | 45.0% |
! | CTTTCCCTCCCAATTTTCAC+AGG | + | chr3_4:26579146-26579165 | Msa0496200:CDS | 45.0% |
AGTAGAATACTCGACGCTGA+AGG | + | chr3_4:26579730-26579749 | Msa0496200:CDS | 45.0% | |
GGGAAGAGACCATTACTTTC+TGG | + | chr3_4:26579928-26579947 | Msa0496200:CDS | 45.0% | |
AGAGGTGGAATTGCACCAAT+TGG | + | chr3_4:26579970-26579989 | Msa0496200:CDS | 45.0% | |
GAGGTGGAATTGCACCAATT+GGG | + | chr3_4:26579971-26579990 | Msa0496200:CDS | 45.0% | |
AGGTGGAATTGCACCAATTG+GGG | + | chr3_4:26579972-26579991 | Msa0496200:CDS | 45.0% | |
GTGAACTCTATGTCCCCAAT+TGG | - | chr3_4:26579988-26580007 | None:intergenic | 45.0% | |
! | ATTCTAGCTGGATAAGGAGC+AGG | + | chr3_4:26580013-26580032 | Msa0496200:CDS | 45.0% |
GGATAAGGAGCAGGAAGTTT+AGG | + | chr3_4:26580022-26580041 | Msa0496200:CDS | 45.0% | |
TTGCAGTTATGGTGAGTCGT+GGG | + | chr3_4:26580046-26580065 | Msa0496200:CDS | 45.0% | |
! | GATTCAAGAAGGCATGACTG+AGG | + | chr3_4:26580086-26580105 | Msa0496200:CDS | 45.0% |
CAATACCCTCCCATGTATTG+TGG | + | chr3_4:26580363-26580382 | Msa0496200:intron | 45.0% | |
ATACTGTTCGGGAATGCATC+GGG | + | chr3_4:26580409-26580428 | Msa0496200:intron | 45.0% | |
! | CCTTAGCCATCATTTTGTGG+TGG | - | chr3_4:26581222-26581241 | None:intergenic | 45.0% |
CCACCACAAAATGATGGCTA+AGG | + | chr3_4:26581219-26581238 | Msa0496200:CDS | 45.0% | |
! | TCCCCTTAGCCATCATTTTG+TGG | - | chr3_4:26581225-26581244 | None:intergenic | 45.0% |
TGGGGATGTCTGATAGAATG+TGG | + | chr3_4:26581838-26581857 | Msa0496200:CDS | 45.0% | |
! | GCATGCAATGACTTGTGACA+TGG | + | chr3_4:26581875-26581894 | Msa0496200:CDS | 45.0% |
ACATGGGGAGCAAGATCTAT+AGG | + | chr3_4:26581892-26581911 | Msa0496200:CDS | 45.0% | |
! | AGCAAGATCTATAGGTACCG+TGG | + | chr3_4:26581900-26581919 | Msa0496200:CDS | 45.0% |
GAATGGTAAACTGAGGTCCA+CGG | - | chr3_4:26581920-26581939 | None:intergenic | 45.0% | |
TTGGCTCAAGTACTCTCTGT+TGG | - | chr3_4:26581997-26582016 | None:intergenic | 45.0% | |
! | CACAAAATGGGATGAGTTGG+AGG | + | chr3_4:26582191-26582210 | Msa0496200:CDS | 45.0% |
CCACTACAACATGTCTTGTG+TGG | - | chr3_4:26582407-26582426 | None:intergenic | 45.0% | |
CCACACAAGACATGTTGTAG+TGG | + | chr3_4:26582404-26582423 | Msa0496200:intron | 45.0% | |
!!! | GGATTTCCTTTTGGCTTCTC+AGG | + | chr3_4:26583041-26583060 | Msa0496200:CDS | 45.0% |
TGTGAACCTGAGAAGCCAAA+AGG | - | chr3_4:26583050-26583069 | None:intergenic | 45.0% | |
CTCAGGTTCACAATCAGATG+GGG | + | chr3_4:26583058-26583077 | Msa0496200:CDS | 45.0% | |
! | ACCTTCAAGTTCTGTCCCTA+GGG | + | chr3_4:26583088-26583107 | Msa0496200:CDS | 45.0% |
TCTGTCCCTAGGGACATTAA+TGG | + | chr3_4:26583098-26583117 | Msa0496200:CDS | 45.0% | |
CTGTCCCTAGGGACATTAAT+GGG | + | chr3_4:26583099-26583118 | Msa0496200:CDS | 45.0% | |
GTGAACCCATTAATGTCCCT+AGG | - | chr3_4:26583107-26583126 | None:intergenic | 45.0% | |
!! | GGGACATTAATGGGTTCACA+AGG | + | chr3_4:26583108-26583127 | Msa0496200:CDS | 45.0% |
GCAATAGATTGGAGATCGGA+CGG | + | chr3_4:26583260-26583279 | Msa0496200:three_prime_UTR | 45.0% | |
CGTCCTGCTGTAATAGATCT+TGG | - | chr3_4:26583286-26583305 | None:intergenic | 45.0% | |
AGGTTTAGTGTAAAGGTGGC+AGG | + | chr3_4:26583489-26583508 | Msa0496200:three_prime_UTR | 45.0% | |
GGTTTAGTGTAAAGGTGGCA+GGG | + | chr3_4:26583490-26583509 | Msa0496200:three_prime_UTR | 45.0% | |
!!! | ATTCATTTTTTTATTAAAAA+TGG | - | chr3_4:26578438-26578457 | None:intergenic | 5.0% |
!!! | ATATTTTATTAAAAATAAGA+TGG | + | chr3_4:26578490-26578509 | Msa0496200:intron | 5.0% |
!! | AATCTAATATATTTAATTAA+AGG | - | chr3_4:26581748-26581767 | None:intergenic | 5.0% |
TCTGCGGAGACTACTGCAAT+TGG | - | chr3_4:26578640-26578659 | None:intergenic | 50.0% | |
TCCGCAGAGAAACACTTGTG+TGG | + | chr3_4:26578652-26578671 | Msa0496200:intron | 50.0% | |
GAGAAACACTTGTGTGGACC+AGG | + | chr3_4:26578658-26578677 | Msa0496200:intron | 50.0% | |
TGGTTAGGTGAGTGAAGAGG+TGG | + | chr3_4:26579013-26579032 | Msa0496200:intron | 50.0% | |
GGTGACCTATTGATGGAAGG+TGG | - | chr3_4:26579062-26579081 | None:intergenic | 50.0% | |
!! | GTTGTTGATCCCTTGGTGCT+TGG | - | chr3_4:26579097-26579116 | None:intergenic | 50.0% |
!! | CTGTCATGTGCTGCTTTGTC+CGG | + | chr3_4:26579469-26579488 | Msa0496200:intron | 50.0% |
GTTGCAGTTATGGTGAGTCG+TGG | + | chr3_4:26580045-26580064 | Msa0496200:CDS | 50.0% | |
!! | ACATCATCGCCAAGCATTGG+TGG | - | chr3_4:26581163-26581182 | None:intergenic | 50.0% |
CACACATCATCGCCAAGCAT+TGG | - | chr3_4:26581166-26581185 | None:intergenic | 50.0% | |
CAATGCTTGGCGATGATGTG+TGG | + | chr3_4:26581164-26581183 | Msa0496200:CDS | 50.0% | |
TGTGGCGCCTAGAGAAGATA+GGG | + | chr3_4:26581182-26581201 | Msa0496200:CDS | 50.0% | |
CACAAATGGCTAGCAGTGAG+TGG | + | chr3_4:26582979-26582998 | Msa0496200:CDS | 50.0% | |
! | CACCTTCAAGTTCTGTCCCT+AGG | + | chr3_4:26583087-26583106 | Msa0496200:CDS | 50.0% |
TCCCTAGGGACAGAACTTGA+AGG | - | chr3_4:26583092-26583111 | None:intergenic | 50.0% | |
CGGCCAAGATCTATTACAGC+AGG | + | chr3_4:26583280-26583299 | Msa0496200:three_prime_UTR | 50.0% | |
AGGGCCCACAATACATGGGA+GGG | - | chr3_4:26580371-26580390 | None:intergenic | 55.0% | |
AGGGAGGGCCCACAATACAT+GGG | - | chr3_4:26580375-26580394 | None:intergenic | 55.0% | |
AAGGGAGGGCCCACAATACA+TGG | - | chr3_4:26580376-26580395 | None:intergenic | 55.0% | |
! | GTGGGCCCTCCCTTTTATTG+TGG | + | chr3_4:26580382-26580401 | Msa0496200:intron | 55.0% |
GTGTGGCGCCTAGAGAAGAT+AGG | + | chr3_4:26581181-26581200 | Msa0496200:CDS | 55.0% | |
GGTGGCAGGGACTAATGTTG+TGG | + | chr3_4:26583503-26583522 | Msa0496200:three_prime_UTR | 55.0% | |
!! | CTCATGGGTTAGGGTTGGGG+TGG | + | chr3_4:26578176-26578195 | Msa0496200:intron | 60.0% |
GAGGGCCCACAATACATGGG+AGG | - | chr3_4:26580372-26580391 | None:intergenic | 60.0% | |
GCAGTTGCAGCTAGCGATCC+AGG | - | chr3_4:26583159-26583178 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 26577664 | 26583546 | 26577664 | ID=Msa0496200;Name=Msa0496200 |
chr3_4 | mRNA | 26577664 | 26583546 | 26577664 | ID=Msa0496200-mRNA-1;Parent=Msa0496200;Name=Msa0496200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|1|1|1|1|1|8|407|488 |
chr3_4 | exon | 26577664 | 26577821 | 26577664 | ID=Msa0496200-mRNA-1:exon:6312;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26577983 | 26578058 | 26577983 | ID=Msa0496200-mRNA-1:exon:6313;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26579020 | 26579167 | 26579020 | ID=Msa0496200-mRNA-1:exon:6314;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26579728 | 26580138 | 26579728 | ID=Msa0496200-mRNA-1:exon:6315;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26581143 | 26581303 | 26581143 | ID=Msa0496200-mRNA-1:exon:6316;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26581828 | 26582025 | 26581828 | ID=Msa0496200-mRNA-1:exon:6317;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26582159 | 26582258 | 26582159 | ID=Msa0496200-mRNA-1:exon:6318;Parent=Msa0496200-mRNA-1 |
chr3_4 | exon | 26582853 | 26583546 | 26582853 | ID=Msa0496200-mRNA-1:exon:6319;Parent=Msa0496200-mRNA-1 |
chr3_4 | five_prime_UTR | 26577664 | 26577735 | 26577664 | ID=Msa0496200-mRNA-1:five_prime_utr;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26577736 | 26577821 | 26577736 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26577983 | 26578058 | 26577983 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26579020 | 26579167 | 26579020 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26579728 | 26580138 | 26579728 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26581143 | 26581303 | 26581143 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26581828 | 26582025 | 26581828 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26582159 | 26582258 | 26582159 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | CDS | 26582853 | 26583139 | 26582853 | ID=Msa0496200-mRNA-1:cds;Parent=Msa0496200-mRNA-1 |
chr3_4 | three_prime_UTR | 26583140 | 26583546 | 26583140 | ID=Msa0496200-mRNA-1:three_prime_utr;Parent=Msa0496200-mRNA-1 |
Gene Sequence |
Protein sequence |