Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496210 | XP_039683138.1 | 91.684 | 493 | 36 | 2 | 1 | 488 | 1 | 493 | 0.0 | 935 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496210 | sp|Q9C9T2|SARD1_ARATH | 49.894 | 473 | 202 | 11 | 1 | 467 | 1 | 444 | 5.85e-146 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496210 | A0A396HLL0 | 91.684 | 493 | 36 | 2 | 1 | 488 | 1 | 493 | 0.0 | 935 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085290 | Msa0496210 | 0.811768 | 5.933412e-51 | -8.615850e-47 |
| Msa0100080 | Msa0496210 | 0.814035 | 1.891025e-51 | -8.615850e-47 |
| Msa0141250 | Msa0496210 | 0.808334 | 3.259858e-50 | -8.615850e-47 |
| Msa0142280 | Msa0496210 | 0.808612 | 2.843857e-50 | -8.615850e-47 |
| Msa0236070 | Msa0496210 | 0.803016 | 4.262311e-49 | -8.615850e-47 |
| Msa0244140 | Msa0496210 | 0.809961 | 1.460973e-50 | -8.615850e-47 |
| Msa0244190 | Msa0496210 | 0.827205 | 1.779094e-54 | -8.615850e-47 |
| Msa0319290 | Msa0496210 | 0.801049 | 1.081651e-48 | -8.615850e-47 |
| Msa0496200 | Msa0496210 | 0.805011 | 1.639957e-49 | -8.615850e-47 |
| Msa0496210 | Msa0679550 | 0.812644 | 3.822735e-51 | -8.615850e-47 |
| Msa0496210 | Msa0721340 | 0.811496 | 6.800243e-51 | -8.615850e-47 |
| Msa0496210 | Msa0809140 | 0.802033 | 6.798446e-49 | -8.615850e-47 |
| Msa0496210 | Msa0870060 | 0.809399 | 1.929196e-50 | -8.615850e-47 |
| Msa0496210 | Msa0998460 | 0.894330 | 2.729864e-75 | -8.615850e-47 |
| Msa0496210 | Msa1115280 | 0.818903 | 1.537518e-52 | -8.615850e-47 |
| Msa0496210 | Msa1224200 | 0.815011 | 1.150329e-51 | -8.615850e-47 |
| Msa0496210 | Msa1381960 | 0.807412 | 5.119727e-50 | -8.615850e-47 |
| Msa0496210 | Msa1458510 | 0.801723 | 7.872053e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496210 | MtrunA17_Chr6g0484111 | 91.684 | 493 | 36 | 2 | 1 | 488 | 1 | 493 | 0.0 | 935 |
| Msa0496210 | MtrunA17_Chr6g0484131 | 90.872 | 493 | 32 | 3 | 1 | 488 | 1 | 485 | 0.0 | 922 |
| Msa0496210 | MtrunA17_Chr6g0484121 | 90.264 | 493 | 35 | 3 | 1 | 488 | 1 | 485 | 0.0 | 910 |
| Msa0496210 | MtrunA17_Chr8g0391221 | 63.789 | 475 | 159 | 9 | 1 | 469 | 1 | 468 | 0.0 | 594 |
| Msa0496210 | MtrunA17_Chr8g0391211 | 62.272 | 493 | 171 | 11 | 1 | 486 | 72 | 556 | 0.0 | 578 |
| Msa0496210 | MtrunA17_Chr4g0072691 | 47.423 | 388 | 191 | 7 | 27 | 409 | 3 | 382 | 1.85e-117 | 357 |
| Msa0496210 | MtrunA17_Chr4g0048161 | 47.781 | 383 | 190 | 6 | 11 | 387 | 19 | 397 | 3.48e-116 | 355 |
| Msa0496210 | MtrunA17_Chr2g0281171 | 45.960 | 396 | 196 | 8 | 1 | 387 | 12 | 398 | 4.40e-114 | 350 |
| Msa0496210 | MtrunA17_Chr2g0304831 | 42.534 | 442 | 230 | 8 | 4 | 437 | 11 | 436 | 5.16e-110 | 338 |
| Msa0496210 | MtrunA17_Chr4g0059411 | 47.386 | 306 | 152 | 7 | 11 | 315 | 9 | 306 | 3.10e-81 | 262 |
| Msa0496210 | MtrunA17_Chr7g0271691 | 34.857 | 350 | 209 | 8 | 47 | 390 | 44 | 380 | 1.48e-51 | 183 |
| Msa0496210 | MtrunA17_Chr7g0271671 | 31.931 | 404 | 235 | 13 | 1 | 378 | 1 | 390 | 1.09e-46 | 170 |
| Msa0496210 | MtrunA17_Chr7g0271681 | 36.271 | 295 | 175 | 7 | 89 | 376 | 10 | 298 | 3.15e-45 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496210 | AT1G73805.1 | 49.894 | 473 | 202 | 11 | 1 | 467 | 1 | 444 | 5.95e-147 | 428 |
| Msa0496210 | AT5G57580.1 | 47.757 | 379 | 188 | 5 | 10 | 382 | 14 | 388 | 2.75e-116 | 356 |
| Msa0496210 | AT4G25800.1 | 47.532 | 385 | 185 | 7 | 11 | 387 | 9 | 384 | 2.98e-113 | 347 |
| Msa0496210 | AT4G25800.2 | 47.532 | 385 | 185 | 7 | 11 | 387 | 9 | 384 | 2.98e-113 | 347 |
| Msa0496210 | AT2G18750.3 | 41.556 | 450 | 241 | 10 | 24 | 457 | 34 | 477 | 1.04e-108 | 336 |
| Msa0496210 | AT2G18750.2 | 41.556 | 450 | 241 | 10 | 24 | 457 | 34 | 477 | 1.04e-108 | 336 |
| Msa0496210 | AT2G18750.1 | 41.556 | 450 | 241 | 10 | 24 | 457 | 34 | 477 | 1.04e-108 | 336 |
| Msa0496210 | AT2G24300.2 | 44.385 | 374 | 199 | 6 | 15 | 384 | 17 | 385 | 3.80e-98 | 308 |
| Msa0496210 | AT2G24300.3 | 44.385 | 374 | 199 | 6 | 15 | 384 | 21 | 389 | 5.69e-98 | 307 |
| Msa0496210 | AT4G31000.1 | 42.344 | 418 | 221 | 10 | 15 | 422 | 21 | 428 | 7.96e-98 | 306 |
| Msa0496210 | AT2G24300.1 | 44.311 | 334 | 179 | 5 | 55 | 384 | 8 | 338 | 3.99e-86 | 275 |
| Msa0496210 | AT5G62570.1 | 39.572 | 374 | 200 | 9 | 17 | 381 | 21 | 377 | 6.42e-85 | 271 |
| Msa0496210 | AT5G62570.2 | 39.779 | 362 | 197 | 8 | 29 | 381 | 13 | 362 | 1.01e-84 | 270 |
| Msa0496210 | AT5G62570.4 | 38.978 | 372 | 205 | 9 | 1 | 363 | 1 | 359 | 2.08e-84 | 265 |
| Msa0496210 | AT4G31000.2 | 39.153 | 378 | 196 | 10 | 55 | 422 | 54 | 407 | 3.67e-73 | 241 |
| Msa0496210 | AT5G26920.3 | 35.519 | 366 | 216 | 8 | 20 | 381 | 18 | 367 | 1.89e-69 | 228 |
| Msa0496210 | AT5G62570.3 | 43.310 | 284 | 140 | 7 | 17 | 295 | 21 | 288 | 1.48e-68 | 221 |
| Msa0496210 | AT5G26920.1 | 35.519 | 366 | 216 | 8 | 20 | 381 | 18 | 367 | 2.30e-68 | 229 |
| Msa0496210 | AT5G26920.2 | 35.246 | 366 | 209 | 9 | 20 | 381 | 18 | 359 | 5.37e-65 | 220 |
Find 136 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTTTGACACACTATTT+AGG | 0.149643 | 3_4:-26602133 | None:intergenic |
| TAAAATTTGTAGGAATTTAA+TGG | 0.161623 | 3_4:-26602012 | None:intergenic |
| TCAACAAGACTTATGCTTAT+AGG | 0.197679 | 3_4:-26598357 | None:intergenic |
| GGATAAGGAGCAGGAAGTTT+AGG | 0.223342 | 3_4:+26598622 | Msa0496210:CDS |
| GAAGACTTGTTGGAACAATT+TGG | 0.268874 | 3_4:-26598395 | None:intergenic |
| GGGAAGAGACCATTACTTTC+TGG | 0.273521 | 3_4:+26598528 | Msa0496210:CDS |
| TCAGAGTTATATAGACAAAT+TGG | 0.277663 | 3_4:+26600841 | Msa0496210:intron |
| GCTTTAATTAATTTGCATAT+TGG | 0.279068 | 3_4:-26600633 | None:intergenic |
| ACCACAATCTCTAGCTTTAT+AGG | 0.281295 | 3_4:-26598423 | None:intergenic |
| AGTATCATACCTGTGAAAAT+TGG | 0.282063 | 3_4:-26597211 | None:intergenic |
| TTGCTTACTATAAAATTTGT+AGG | 0.293623 | 3_4:-26602022 | None:intergenic |
| TGACTTTGACACACTATTTA+GGG | 0.294787 | 3_4:-26602132 | None:intergenic |
| TTATAGTAAGCAAATATAAT+AGG | 0.302924 | 3_4:+26602032 | Msa0496210:three_prime_UTR |
| TTCAACAACTCAGATTTATT+TGG | 0.304235 | 3_4:+26601895 | Msa0496210:three_prime_UTR |
| ACTGTTGCTGGATGATTGTT+TGG | 0.310236 | 3_4:-26601556 | None:intergenic |
| TGCATTTGGTGTTGTGGTAT+AGG | 0.318778 | 3_4:-26601695 | None:intergenic |
| AATGCAAATGGATTTCCTTT+TGG | 0.323071 | 3_4:+26601712 | Msa0496210:CDS |
| TATCATCAGAATCAATATTA+TGG | 0.324552 | 3_4:+26601589 | Msa0496210:CDS |
| GAATTTAATGGAATAGGATT+TGG | 0.336583 | 3_4:-26602000 | None:intergenic |
| TTGTAGGAATTTAATGGAAT+AGG | 0.340830 | 3_4:-26602006 | None:intergenic |
| TATGTTGCTGCTACTGTTGC+TGG | 0.342307 | 3_4:-26601568 | None:intergenic |
| TATATTGTACCTTATTCATT+TGG | 0.345403 | 3_4:-26600698 | None:intergenic |
| GATAAGGAGCAGGAAGTTTA+GGG | 0.346752 | 3_4:+26598623 | Msa0496210:CDS |
| TTGGAGAAGCATACACAAAA+TGG | 0.358634 | 3_4:+26600864 | Msa0496210:CDS |
| GATCTCATTCGTTTGTCGTT+TGG | 0.359193 | 3_4:-26595586 | None:intergenic |
| CTAGAGATTGTGGTACTTGA+TGG | 0.361616 | 3_4:+26598432 | Msa0496210:CDS |
| AAAGGAAATCCATTTGCATT+TGG | 0.365748 | 3_4:-26601709 | None:intergenic |
| GTACTTGAACCAAATGAATA+AGG | 0.370265 | 3_4:+26600689 | Msa0496210:CDS |
| GAAGAGGTGGATAGAGCAAT+TGG | 0.372285 | 3_4:+26597082 | Msa0496210:CDS |
| GACTGAGGCATTTGTTGTTA+AGG | 0.376185 | 3_4:+26598701 | Msa0496210:CDS |
| ATATATACCTCTCTTAGCTT+TGG | 0.376627 | 3_4:-26599878 | None:intergenic |
| CCACAATCTCTAGCTTTATA+GGG | 0.385020 | 3_4:-26598422 | None:intergenic |
| ATAGGGTAAGGAAGACTTGT+TGG | 0.390458 | 3_4:-26598405 | None:intergenic |
| CTGTCCCTAGGGACATTAAT+GGG | 0.391628 | 3_4:+26601779 | Msa0496210:CDS |
| TCTGTCCCTAGGGACATTAA+TGG | 0.395267 | 3_4:+26601778 | Msa0496210:CDS |
| GTTGTTGATCCCTTGGTGCT+TGG | 0.401027 | 3_4:-26597150 | None:intergenic |
| ATAGTGTGTCAAAGTCAAAA+TGG | 0.408567 | 3_4:+26602138 | Msa0496210:three_prime_UTR |
| GAAGTTTAGGGTTGCAGTTA+TGG | 0.408854 | 3_4:+26598635 | Msa0496210:CDS |
| TAATGAAGGTGACCTATTGA+TGG | 0.408912 | 3_4:-26597122 | None:intergenic |
| AGAGGTGGAATTGCACCAAT+TGG | 0.409164 | 3_4:+26598570 | Msa0496210:CDS |
| GTGTGGCGCCTAGAGAAGAT+AGG | 0.412903 | 3_4:+26599770 | Msa0496210:CDS |
| TACATAGTGAAGGAAAGAAC+TGG | 0.419237 | 3_4:+26598507 | Msa0496210:CDS |
| GCTGTCCATCTTCCATCAAT+AGG | 0.430901 | 3_4:+26597110 | Msa0496210:CDS |
| GTATCATACCTGTGAAAATT+GGG | 0.431802 | 3_4:-26597210 | None:intergenic |
| CACATGATGAAAATGAGAAC+TGG | 0.432538 | 3_4:+26598463 | Msa0496210:CDS |
| AAGGTTGGTTGTTGATCCCT+TGG | 0.434839 | 3_4:-26597157 | None:intergenic |
| GAGGTGGAATTGCACCAATT+GGG | 0.439927 | 3_4:+26598571 | Msa0496210:CDS |
| TTGGTTCAAGTACTCTCTGC+TGG | 0.443464 | 3_4:-26600679 | None:intergenic |
| TTGTCCATCCGGTCTTCAAT+CGG | 0.447458 | 3_4:-26601947 | None:intergenic |
| CATCTTTCCCTATCTTCTCT+AGG | 0.450984 | 3_4:-26599778 | None:intergenic |
| ACCACAACACCAAATGCAAA+TGG | 0.454821 | 3_4:+26601700 | Msa0496210:CDS |
| GCCAAGCAATAATGTACAAA+TGG | 0.456056 | 3_4:+26601645 | Msa0496210:CDS |
| CAGATAATTCTAGCTGGATA+AGG | 0.456631 | 3_4:+26598607 | Msa0496210:CDS |
| ATCTCTAGCTTTATAGGGTA+AGG | 0.456668 | 3_4:-26598417 | None:intergenic |
| GCCATTTGTACATTATTGCT+TGG | 0.457120 | 3_4:-26601646 | None:intergenic |
| ACATGGGGAGCAAGATCTAT+AGG | 0.460309 | 3_4:+26600577 | Msa0496210:CDS |
| AGATGTATTAAATGCGGATC+CGG | 0.460970 | 3_4:+26601818 | Msa0496210:exon |
| GTGGGAGTAATCAAAGTGTT+AGG | 0.463827 | 3_4:+26598664 | Msa0496210:CDS |
| TTAATTAAAGCTAATATCAA+TGG | 0.468078 | 3_4:+26600645 | Msa0496210:CDS |
| TACAACTCACATTCAGCAAA+AGG | 0.472093 | 3_4:+26597179 | Msa0496210:CDS |
| TTTGCTGAATGTGAGTTGTA+AGG | 0.473841 | 3_4:-26597176 | None:intergenic |
| TCCATTTGCATTTGGTGTTG+TGG | 0.474676 | 3_4:-26601701 | None:intergenic |
| GCATATTGGATTCAGAAGAA+TGG | 0.478493 | 3_4:-26600619 | None:intergenic |
| AATGAGTTGGAGGAAATTGA+TGG | 0.479528 | 3_4:+26600887 | Msa0496210:CDS |
| CAATTCCACCTCTCATAGTA+AGG | 0.486241 | 3_4:-26598560 | None:intergenic |
| TGTTATGAAGCAAAGAGGTA+AGG | 0.491423 | 3_4:-26595510 | None:intergenic |
| AGCAGTTACAGCAGGCGATC+CGG | 0.493342 | 3_4:-26601837 | None:intergenic |
| CTGAATGTGAGTTGTAAGGT+TGG | 0.494554 | 3_4:-26597172 | None:intergenic |
| CCACCACAAAATGATGGCTA+AGG | 0.503068 | 3_4:+26599808 | Msa0496210:CDS |
| CACAAAATGGAATGAGTTGG+AGG | 0.508685 | 3_4:+26600877 | Msa0496210:CDS |
| CACACATCATCGCCAAGCAT+TGG | 0.517632 | 3_4:-26599752 | None:intergenic |
| AAACATCATCCACCAATGCT+TGG | 0.524035 | 3_4:+26599740 | Msa0496210:CDS |
| CCCTATAAAGCTAGAGATTG+TGG | 0.525360 | 3_4:+26598422 | Msa0496210:CDS |
| AACATTGCTTTGTTAACCCA+AGG | 0.527734 | 3_4:+26600923 | Msa0496210:CDS |
| ATCTTCAAGTTCTGTCCCTA+GGG | 0.529104 | 3_4:+26601768 | Msa0496210:CDS |
| CTCAGCCACCGATTGAAGAC+CGG | 0.529461 | 3_4:+26601939 | Msa0496210:three_prime_UTR |
| ATTCTAGCTGGATAAGGAGC+AGG | 0.530678 | 3_4:+26598613 | Msa0496210:CDS |
| CATCTTCAAGTTCTGTCCCT+AGG | 0.533443 | 3_4:+26601767 | Msa0496210:CDS |
| TGGTTAGGTGAGTGAAGAGG+TGG | 0.534317 | 3_4:+26597069 | Msa0496210:intron |
| GGTGCTTGGATTCTTAATGA+AGG | 0.535525 | 3_4:-26597136 | None:intergenic |
| AGTTATATAGACAAATTGGT+TGG | 0.539117 | 3_4:+26600845 | Msa0496210:CDS |
| GTGAACTCTATGTCCCCAAT+TGG | 0.542652 | 3_4:-26598585 | None:intergenic |
| CACCACAAAATGATGGCTAA+GGG | 0.548210 | 3_4:+26599809 | Msa0496210:CDS |
| GTTGTTGAATCACTTTCCTA+CGG | 0.551108 | 3_4:-26601881 | None:intergenic |
| TTCACAGGGTCACAATCAGA+TGG | 0.555752 | 3_4:+26601736 | Msa0496210:CDS |
| AGTTCACAGATAATTCTAGC+TGG | 0.556731 | 3_4:+26598601 | Msa0496210:CDS |
| ACATCATCGCCAAGCATTGG+TGG | 0.557359 | 3_4:-26599749 | None:intergenic |
| TTCAGAAGAATGGTAAATTG+AGG | 0.561852 | 3_4:-26600609 | None:intergenic |
| TCCATCCGGTCTTCAATCGG+TGG | 0.564111 | 3_4:-26601944 | None:intergenic |
| GGTGACCTATTGATGGAAGA+TGG | 0.565808 | 3_4:-26597115 | None:intergenic |
| ATACACAAAATGGAATGAGT+TGG | 0.570127 | 3_4:+26600874 | Msa0496210:CDS |
| GTGAACCCATTAATGTCCCT+AGG | 0.571248 | 3_4:-26601784 | None:intergenic |
| CTAGAGAAGATAGGGAAAGA+TGG | 0.572158 | 3_4:+26599779 | Msa0496210:CDS |
| GTTGCAGTTATGGTGAGTCG+TGG | 0.573264 | 3_4:+26598645 | Msa0496210:CDS |
| TTCAATTCTCCAGAAAGTAA+TGG | 0.573973 | 3_4:-26598537 | None:intergenic |
| AGTGCATACGAAGCTAATGA+AGG | 0.577484 | 3_4:-26595616 | None:intergenic |
| TGTGACCCTGTGAAGCCAAA+AGG | 0.578109 | 3_4:-26601727 | None:intergenic |
| AGGTGGAATTGCACCAATTG+GGG | 0.581694 | 3_4:+26598572 | Msa0496210:CDS |
| CAAAGTGTTAGGATTCAAGA+AGG | 0.583699 | 3_4:+26598675 | Msa0496210:CDS |
| TCACAGGGTCACAATCAGAT+GGG | 0.588057 | 3_4:+26601737 | Msa0496210:CDS |
| TGTGGCGCCTAGAGAAGATA+GGG | 0.589096 | 3_4:+26599771 | Msa0496210:CDS |
| AGCTTTCCACCACAAAATGA+TGG | 0.589747 | 3_4:+26599802 | Msa0496210:CDS |
| CAATGCTTGGCGATGATGTG+TGG | 0.590954 | 3_4:+26599753 | Msa0496210:CDS |
| CTGCGTGAAGCAGTTACAGC+AGG | 0.591391 | 3_4:-26601845 | None:intergenic |
| GACTTTGACACACTATTTAG+GGG | 0.592829 | 3_4:-26602131 | None:intergenic |
| AACTTTAGATGTATTAAATG+CGG | 0.594500 | 3_4:+26601812 | Msa0496210:exon |
| TGGACAAAATCTATTACAGC+AGG | 0.594610 | 3_4:+26601963 | Msa0496210:three_prime_UTR |
| ATTCAATAAATACATAGTGA+AGG | 0.602832 | 3_4:+26598497 | Msa0496210:CDS |
| TGAACCCATTAATGTCCCTA+GGG | 0.602842 | 3_4:-26601783 | None:intergenic |
| TTGCAGTTATGGTGAGTCGT+GGG | 0.605352 | 3_4:+26598646 | Msa0496210:CDS |
| GAATTGAACCTTACTATGAG+AGG | 0.607156 | 3_4:+26598552 | Msa0496210:CDS |
| GAATGGTAAATTGAGGTCCA+CGG | 0.610553 | 3_4:-26600602 | None:intergenic |
| AAAAGTGTTATGAAGCAAAG+AGG | 0.615154 | 3_4:-26595515 | None:intergenic |
| TTGAACCTTACTATGAGAGG+TGG | 0.618381 | 3_4:+26598555 | Msa0496210:CDS |
| TCATACCTGTGAAAATTGGG+AGG | 0.624528 | 3_4:-26597207 | None:intergenic |
| GCATGCAATGACTTGTGACA+TGG | 0.626229 | 3_4:+26600560 | Msa0496210:CDS |
| AGTAGAATACTCGACGCTGA+AGG | 0.629771 | 3_4:+26598330 | Msa0496210:CDS |
| ATTTGGTTAGGTGAGTGAAG+AGG | 0.632675 | 3_4:+26597066 | Msa0496210:intron |
| ACATAGTGAAGGAAAGAACT+GGG | 0.634050 | 3_4:+26598508 | Msa0496210:CDS |
| ATTAAGAATCCAAGCACCAA+GGG | 0.638386 | 3_4:+26597141 | Msa0496210:CDS |
| CATACCTGTGAAAATTGGGA+GGG | 0.639003 | 3_4:-26597206 | None:intergenic |
| GCCACCGATTGAAGACCGGA+TGG | 0.641777 | 3_4:+26601943 | Msa0496210:three_prime_UTR |
| CATTAAGAATCCAAGCACCA+AGG | 0.647255 | 3_4:+26597140 | Msa0496210:CDS |
| TACAAATGGCTAGCAGTGAG+TGG | 0.650899 | 3_4:+26601659 | Msa0496210:CDS |
| CAGTAGTCGATCTTAGCCGT+AGG | 0.652196 | 3_4:+26601865 | Msa0496210:three_prime_UTR |
| GGGACATTAATGGGTTCACA+AGG | 0.658302 | 3_4:+26601788 | Msa0496210:CDS |
| ACCACAAAATGATGGCTAAG+GGG | 0.658660 | 3_4:+26599810 | Msa0496210:CDS |
| AGCAAGATCTATAGGTACCG+TGG | 0.658732 | 3_4:+26600585 | Msa0496210:CDS |
| TGATACTCCAAAGCTAAGAG+AGG | 0.665341 | 3_4:+26599871 | Msa0496210:CDS |
| CATGCAATGACTTGTGACAT+GGG | 0.667953 | 3_4:+26600561 | Msa0496210:CDS |
| CACAGGGTCACAATCAGATG+GGG | 0.676341 | 3_4:+26601738 | Msa0496210:CDS |
| TGGGGATGTCTGATAGAATG+TGG | 0.679640 | 3_4:+26600523 | Msa0496210:CDS |
| TTTGTTGTTAAGGATCATCG+TGG | 0.682651 | 3_4:+26598711 | Msa0496210:CDS |
| GATTCAAGAAGGCATGACTG+AGG | 0.696401 | 3_4:+26598686 | Msa0496210:CDS |
| AATTATAGGTGATCAAACTG+TGG | 0.703154 | 3_4:+26601525 | Msa0496210:intron |
| ATGCAATGACTTGTGACATG+GGG | 0.729736 | 3_4:+26600562 | Msa0496210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTAACAAAAA+GGG | + | chr3_4:26596175-26596194 | Msa0496210:intron | 10.0% |
| !!! | TTTTTTTTTTTAACAAAAAG+GGG | + | chr3_4:26596176-26596195 | Msa0496210:intron | 10.0% |
| !!! | AAATTCATTTTTACTAAAAA+TGG | - | chr3_4:26596682-26596701 | None:intergenic | 10.0% |
| !!! | AGGTATATATTTTTATAATT+AGG | + | chr3_4:26599891-26599910 | Msa0496210:intron | 10.0% |
| !!! | GGTATATATTTTTATAATTA+GGG | + | chr3_4:26599892-26599911 | Msa0496210:intron | 10.0% |
| !!! | GTATATATTTTTATAATTAG+GGG | + | chr3_4:26599893-26599912 | Msa0496210:intron | 10.0% |
| !! | AAAAAAAATAGCATAATAAT+AGG | - | chr3_4:26599954-26599973 | None:intergenic | 10.0% |
| !! | TTTAATATGAACTTAATTAT+AGG | + | chr3_4:26601511-26601530 | Msa0496210:intron | 10.0% |
| !!! | TAAGTTCTTTTTTATAATTA+TGG | + | chr3_4:26602076-26602095 | Msa0496210:intron | 10.0% |
| !! | CAATATTATCCTAAAATTTA+AGG | + | chr3_4:26596131-26596150 | Msa0496210:intron | 15.0% |
| !!! | GGTTTTTTTTTTTAACAAAA+AGG | + | chr3_4:26596174-26596193 | Msa0496210:intron | 15.0% |
| !!! | TTTTTTTTTTAACAAAAAGG+GGG | + | chr3_4:26596177-26596196 | Msa0496210:intron | 15.0% |
| !!! | CTGATTTTTTTAACTAAAAA+TGG | - | chr3_4:26596330-26596349 | None:intergenic | 15.0% |
| !! | TTACCTTTATTAAAATAAGA+TGG | + | chr3_4:26596737-26596756 | Msa0496210:intron | 15.0% |
| !! | ACTTTATTATATGATTCATT+TGG | + | chr3_4:26597049-26597068 | Msa0496210:intron | 15.0% |
| !!! | TTTTGTTTTTTTAACTCTAA+TGG | - | chr3_4:26597571-26597590 | None:intergenic | 15.0% |
| !!! | ATAAATTTGGTAATCAAATT+TGG | - | chr3_4:26597674-26597693 | None:intergenic | 15.0% |
| !!! | TTTTCGTCATTATTAAATTT+TGG | + | chr3_4:26597696-26597715 | Msa0496210:intron | 15.0% |
| !!! | TTTCGTCATTATTAAATTTT+GGG | + | chr3_4:26597697-26597716 | Msa0496210:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr3_4:26598185-26598204 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3_4:26598093-26598112 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3_4:26597993-26598012 | Msa0496210:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr3_4:26598185-26598204 | Msa0496210:intron | 15.0% |
| !! | CATCTTATTAATATGTTTAA+GGG | - | chr3_4:26599113-26599132 | None:intergenic | 15.0% |
| !! | TTAACATGTATATATCATTA+GGG | - | chr3_4:26599261-26599280 | None:intergenic | 15.0% |
| !! | TTATATTTAGTATTTACAGA+AGG | + | chr3_4:26599497-26599516 | Msa0496210:intron | 15.0% |
| !!! | TTTAAGATCTATTTTTAGTT+CGG | + | chr3_4:26599974-26599993 | Msa0496210:intron | 15.0% |
| !!! | TAATTTTAAGTTCAAATTTG+AGG | - | chr3_4:26600186-26600205 | None:intergenic | 15.0% |
| !! | AATCTAATATGTTTAACTAA+AGG | - | chr3_4:26600433-26600452 | None:intergenic | 15.0% |
| !! | TTAATTAAAGCTAATATCAA+TGG | + | chr3_4:26600645-26600664 | Msa0496210:CDS | 15.0% |
| !!! | TTTTGAGATACTTAATAAAA+TGG | - | chr3_4:26601436-26601455 | None:intergenic | 15.0% |
| !! | TAAAATTTGTAGGAATTTAA+TGG | - | chr3_4:26602015-26602034 | None:intergenic | 15.0% |
| !! | TTATAGTAAGCAAATATAAT+AGG | + | chr3_4:26602032-26602051 | Msa0496210:three_prime_UTR | 15.0% |
| !! | ATGCAAAAATATTGTTTGTT+GGG | - | chr3_4:26595969-26595988 | None:intergenic | 20.0% |
| !! | TATGCAAAAATATTGTTTGT+TGG | - | chr3_4:26595970-26595989 | None:intergenic | 20.0% |
| !! | TTAAATTTCCATATTTGTGA+TGG | + | chr3_4:26596521-26596540 | Msa0496210:intron | 20.0% |
| !!! | TGACCATCTTATTTTAATAA+AGG | - | chr3_4:26596743-26596762 | None:intergenic | 20.0% |
| !!! | ATTTTAAGGGTTGTTTAATA+TGG | - | chr3_4:26596781-26596800 | None:intergenic | 20.0% |
| !!! | GACTCTCAAATAAATTTTAA+GGG | - | chr3_4:26596794-26596813 | None:intergenic | 20.0% |
| !!! | AGACTCTCAAATAAATTTTA+AGG | - | chr3_4:26596795-26596814 | None:intergenic | 20.0% |
| !! | TTAATGCAATATTCATAGTT+AGG | - | chr3_4:26596948-26596967 | None:intergenic | 20.0% |
| !! | ATTATATGATTCATTTGGTT+AGG | + | chr3_4:26597054-26597073 | Msa0496210:intron | 20.0% |
| !!! | TTGATTTGTAAAATTGTTTC+TGG | + | chr3_4:26597328-26597347 | Msa0496210:intron | 20.0% |
| !!! | TGATTTGTAAAATTGTTTCT+GGG | + | chr3_4:26597329-26597348 | Msa0496210:intron | 20.0% |
| !!! | AATGACGAAAAGTATAAATT+TGG | - | chr3_4:26597687-26597706 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr3_4:26598028-26598047 | Msa0496210:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3_4:26598122-26598141 | Msa0496210:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3_4:26598123-26598142 | Msa0496210:intron | 20.0% |
| !! | TCACTACAACAAAAATTTAA+GGG | - | chr3_4:26598259-26598278 | None:intergenic | 20.0% |
| !! | ATCACTACAACAAAAATTTA+AGG | - | chr3_4:26598260-26598279 | None:intergenic | 20.0% |
| !! | ATTCAATAAATACATAGTGA+AGG | + | chr3_4:26598497-26598516 | Msa0496210:CDS | 20.0% |
| !! | TAGCATGATATATTATTGAT+TGG | + | chr3_4:26598813-26598832 | Msa0496210:intron | 20.0% |
| !!! | ATTTAGTTGAAATTTTTGCT+CGG | - | chr3_4:26598923-26598942 | None:intergenic | 20.0% |
| !! | TTAATATCTTCAACTAACTT+TGG | + | chr3_4:26599066-26599085 | Msa0496210:intron | 20.0% |
| !! | CCATCTTATTAATATGTTTA+AGG | - | chr3_4:26599114-26599133 | None:intergenic | 20.0% |
| !! | CCTTAAACATATTAATAAGA+TGG | + | chr3_4:26599111-26599130 | Msa0496210:intron | 20.0% |
| !! | CTTAACATGTATATATCATT+AGG | - | chr3_4:26599262-26599281 | None:intergenic | 20.0% |
| !! | CTAATGATATATACATGTTA+AGG | + | chr3_4:26599260-26599279 | Msa0496210:intron | 20.0% |
| !!! | GTTCATTAACATTTGTTTTT+AGG | + | chr3_4:26599372-26599391 | Msa0496210:intron | 20.0% |
| !!! | AAAAGTCTTTTAGTTCTATT+AGG | + | chr3_4:26599999-26600018 | Msa0496210:intron | 20.0% |
| !! | CTCGTTTGTTTATTTATTTA+AGG | + | chr3_4:26600218-26600237 | Msa0496210:intron | 20.0% |
| !!! | ATTTTTCTGAAATCAGATTT+TGG | + | chr3_4:26600497-26600516 | Msa0496210:intron | 20.0% |
| !!! | TTTTTCTGAAATCAGATTTT+GGG | + | chr3_4:26600498-26600517 | Msa0496210:intron | 20.0% |
| !!! | GCTTTAATTAATTTGCATAT+TGG | - | chr3_4:26600636-26600655 | None:intergenic | 20.0% |
| !! | TATATTGTACCTTATTCATT+TGG | - | chr3_4:26600701-26600720 | None:intergenic | 20.0% |
| !!! | TGTAGTATTATTTTACTTTG+TGG | + | chr3_4:26600750-26600769 | Msa0496210:intron | 20.0% |
| !! | TTATTCTATATGCTAGATAT+TGG | + | chr3_4:26600774-26600793 | Msa0496210:intron | 20.0% |
| !!! | TCCTCTAATTTCATTTTAAT+TGG | + | chr3_4:26600797-26600816 | Msa0496210:intron | 20.0% |
| !! | ACCAATTAAAATGAAATTAG+AGG | - | chr3_4:26600801-26600820 | None:intergenic | 20.0% |
| !!! | TAACTCTGAAAATTTAGAAA+TGG | - | chr3_4:26600830-26600849 | None:intergenic | 20.0% |
| !! | TGATTAATTGAAAATACCTT+GGG | - | chr3_4:26600942-26600961 | None:intergenic | 20.0% |
| !! | ATGATTAATTGAAAATACCT+TGG | - | chr3_4:26600943-26600962 | None:intergenic | 20.0% |
| !! | ATTTAACATATTGGTCATAT+CGG | - | chr3_4:26601264-26601283 | None:intergenic | 20.0% |
| !! | AATGCACAAATTTAACATAT+TGG | - | chr3_4:26601273-26601292 | None:intergenic | 20.0% |
| !! | TATCATCAGAATCAATATTA+TGG | + | chr3_4:26601589-26601608 | Msa0496210:CDS | 20.0% |
| !! | AACTTTAGATGTATTAAATG+CGG | + | chr3_4:26601812-26601831 | Msa0496210:exon | 20.0% |
| !! | TTGCTTACTATAAAATTTGT+AGG | - | chr3_4:26602025-26602044 | None:intergenic | 20.0% |
| !! | TCATAACACTTTTGCAAAAA+TGG | + | chr3_4:26595525-26595544 | Msa0496210:exon | 25.0% |
| ! | TTTAATACTTTGATCCATGT+AGG | + | chr3_4:26595678-26595697 | Msa0496210:intron | 25.0% |
| ! | GAAACTACTATCTACATTTA+TGG | + | chr3_4:26595700-26595719 | Msa0496210:intron | 25.0% |
| ! | TTAACTAAAAATGGTGATCT+TGG | - | chr3_4:26596321-26596340 | None:intergenic | 25.0% |
| !!! | TCATGACTTCTTTTTTTTTG+TGG | - | chr3_4:26596501-26596520 | None:intergenic | 25.0% |
| ! | ATATTCAAATCCTTTAGATG+AGG | + | chr3_4:26596546-26596565 | Msa0496210:intron | 25.0% |
| ! | AAGATGGTCAACTATTAAAT+CGG | + | chr3_4:26596753-26596772 | Msa0496210:intron | 25.0% |
| ! | AATTGGAGATTTCATATTGA+CGG | - | chr3_4:26596879-26596898 | None:intergenic | 25.0% |
| !! | TTGTCTTATACGATATTTTG+TGG | - | chr3_4:26597451-26597470 | None:intergenic | 25.0% |
| ! | AATCAAATTTGGCATCTTTA+TGG | - | chr3_4:26597663-26597682 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3_4:26597833-26597852 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3_4:26597834-26597853 | None:intergenic | 25.0% |
| ! | CAAGATTATAACACTATGAA+AGG | + | chr3_4:26597896-26597915 | Msa0496210:intron | 25.0% |
| ! | AGGGCAAAAAAACAAAATTA+GGG | + | chr3_4:26598156-26598175 | Msa0496210:intron | 25.0% |
| !! | TTTAGTTGAAATTTTTGCTC+GGG | - | chr3_4:26598922-26598941 | None:intergenic | 25.0% |
| ! | AGTATAATGCCACAATAAAA+GGG | - | chr3_4:26598994-26599013 | None:intergenic | 25.0% |
| ! | TCTATAGTACAACTAAAAGT+GGG | - | chr3_4:26599139-26599158 | None:intergenic | 25.0% |
| ! | TGTACTATAGACTATGAAAT+AGG | + | chr3_4:26599148-26599167 | Msa0496210:intron | 25.0% |
| ! | TACATGTTAAGGAATCTAAA+AGG | + | chr3_4:26599271-26599290 | Msa0496210:intron | 25.0% |
| ! | AACATTTGTCTTTGTATAAG+AGG | + | chr3_4:26599404-26599423 | Msa0496210:intron | 25.0% |
| ! | ACATTTGTCTTTGTATAAGA+GGG | + | chr3_4:26599405-26599424 | Msa0496210:intron | 25.0% |
| ! | TGAGACAAAATAACTATACA+TGG | + | chr3_4:26600379-26600398 | Msa0496210:intron | 25.0% |
| ! | CTGAAAATTTAGAAATGGTA+TGG | - | chr3_4:26600825-26600844 | None:intergenic | 25.0% |
| ! | TCAGAGTTATATAGACAAAT+TGG | + | chr3_4:26600841-26600860 | Msa0496210:intron | 25.0% |
| ! | AGTTATATAGACAAATTGGT+TGG | + | chr3_4:26600845-26600864 | Msa0496210:CDS | 25.0% |
| !! | CTAGCAATATTTTCTATAGA+TGG | - | chr3_4:26601619-26601638 | None:intergenic | 25.0% |
| ! | TTCAACAACTCAGATTTATT+TGG | + | chr3_4:26601895-26601914 | Msa0496210:three_prime_UTR | 25.0% |
| ! | GAATTTAATGGAATAGGATT+TGG | - | chr3_4:26602003-26602022 | None:intergenic | 25.0% |
| ! | TTGTAGGAATTTAATGGAAT+AGG | - | chr3_4:26602009-26602028 | None:intergenic | 25.0% |
| !! | AAAAGTGTTATGAAGCAAAG+AGG | - | chr3_4:26595518-26595537 | None:intergenic | 30.0% |
| TTGCAAAAATGGCTACTAAA+AGG | + | chr3_4:26595536-26595555 | Msa0496210:exon | 30.0% | |
| ! | CAAAACATGCAGAACTTTTT+AGG | + | chr3_4:26595806-26595825 | Msa0496210:CDS | 30.0% |
| !! | CTTACCACTCTTTTAAGAAA+AGG | - | chr3_4:26595842-26595861 | None:intergenic | 30.0% |
| TTGACACATGCATACATATT+TGG | + | chr3_4:26595881-26595900 | Msa0496210:intron | 30.0% | |
| TGACACATGCATACATATTT+GGG | + | chr3_4:26595882-26595901 | Msa0496210:intron | 30.0% | |
| ! | ATACATATTTGGGTTTAACG+AGG | + | chr3_4:26595892-26595911 | Msa0496210:intron | 30.0% |
| !! | AGGTTAATTTGTTTCTCTCA+TGG | + | chr3_4:26595912-26595931 | Msa0496210:intron | 30.0% |
| !! | GGTTAATTTGTTTCTCTCAT+GGG | + | chr3_4:26595913-26595932 | Msa0496210:intron | 30.0% |
| GGATAATATTGACAAACATC+TGG | - | chr3_4:26596122-26596141 | None:intergenic | 30.0% | |
| ! | GAATACACGCCTTAAATTTT+AGG | - | chr3_4:26596143-26596162 | None:intergenic | 30.0% |
| ! | GCGTGTATTCTCTAAAAAAT+GGG | + | chr3_4:26596153-26596172 | Msa0496210:intron | 30.0% |
| AGTTTATTCAACCCTAGTAT+GGG | - | chr3_4:26596221-26596240 | None:intergenic | 30.0% | |
| ! | TTACGACATATTTTGTGTGA+GGG | - | chr3_4:26596364-26596383 | None:intergenic | 30.0% |
| ! | TTTACGACATATTTTGTGTG+AGG | - | chr3_4:26596365-26596384 | None:intergenic | 30.0% |
| ATCGCATAAATATATGCACA+AGG | + | chr3_4:26596453-26596472 | Msa0496210:intron | 30.0% | |
| ATAAATATATGCACAAGGTC+CGG | + | chr3_4:26596458-26596477 | Msa0496210:intron | 30.0% | |
| !!! | TTCTTTTTTTTTGTGGTGGT+CGG | - | chr3_4:26596494-26596513 | None:intergenic | 30.0% |
| !!! | TGACTTCTTTTTTTTTGTGG+TGG | - | chr3_4:26596498-26596517 | None:intergenic | 30.0% |
| GAATATGTCCATCACAAATA+TGG | - | chr3_4:26596532-26596551 | None:intergenic | 30.0% | |
| TTGTAGTATGAATAGCTATG+CGG | - | chr3_4:26596912-26596931 | None:intergenic | 30.0% | |
| ATGCAATATTCATAGTTAGG+TGG | - | chr3_4:26596945-26596964 | None:intergenic | 30.0% | |
| GTATCATACCTGTGAAAATT+GGG | - | chr3_4:26597213-26597232 | None:intergenic | 30.0% | |
| AGTATCATACCTGTGAAAAT+TGG | - | chr3_4:26597214-26597233 | None:intergenic | 30.0% | |
| CAAATCAAACACTTTACAAC+TGG | - | chr3_4:26597316-26597335 | None:intergenic | 30.0% | |
| GTTAGAGACTAAATTAGAGA+TGG | - | chr3_4:26597641-26597660 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_4:26598216-26598235 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_4:26598215-26598234 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr3_4:26598200-26598219 | None:intergenic | 30.0% | |
| CAGGGCAAAAAAACAAAATT+AGG | + | chr3_4:26598155-26598174 | Msa0496210:intron | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | chr3_4:26598200-26598219 | Msa0496210:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_4:26598215-26598234 | Msa0496210:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_4:26598216-26598235 | Msa0496210:intron | 30.0% |
| TTCTACTACCTGTGAAAATT+GGG | - | chr3_4:26598317-26598336 | None:intergenic | 30.0% | |
| ATTCTACTACCTGTGAAAAT+TGG | - | chr3_4:26598318-26598337 | None:intergenic | 30.0% | |
| TCAACAAGACTTATGCTTAT+AGG | - | chr3_4:26598360-26598379 | None:intergenic | 30.0% | |
| TTCAATTCTCCAGAAAGTAA+TGG | - | chr3_4:26598540-26598559 | None:intergenic | 30.0% | |
| CAGTATAATGCCACAATAAA+AGG | - | chr3_4:26598995-26599014 | None:intergenic | 30.0% | |
| TATTGTGGCATTATACTGTT+CGG | + | chr3_4:26598997-26599016 | Msa0496210:intron | 30.0% | |
| CTATAGTACAACTAAAAGTG+GGG | - | chr3_4:26599138-26599157 | None:intergenic | 30.0% | |
| GTCTATAGTACAACTAAAAG+TGG | - | chr3_4:26599140-26599159 | None:intergenic | 30.0% | |
| ! | CATTTTATAGCTGCTAGTTA+AGG | + | chr3_4:26599208-26599227 | Msa0496210:intron | 30.0% |
| ! | AGAGGGTAAATGATTTTTGT+TGG | + | chr3_4:26599422-26599441 | Msa0496210:intron | 30.0% |
| TAATCTATGATTCCATTGAG+AGG | - | chr3_4:26599620-26599639 | None:intergenic | 30.0% | |
| ATATATACCTCTCTTAGCTT+TGG | - | chr3_4:26599881-26599900 | None:intergenic | 30.0% | |
| ATAGCATAATAATAGGCTCT+AGG | - | chr3_4:26599947-26599966 | None:intergenic | 30.0% | |
| ! | TGAGGTCTAACTTAATCTTT+TGG | - | chr3_4:26600168-26600187 | None:intergenic | 30.0% |
| TAACTAAAGGAAAATGCTAG+TGG | - | chr3_4:26600420-26600439 | None:intergenic | 30.0% | |
| TTCAGAAGAATGGTAAATTG+AGG | - | chr3_4:26600612-26600631 | None:intergenic | 30.0% | |
| GTACTTGAACCAAATGAATA+AGG | + | chr3_4:26600689-26600708 | Msa0496210:CDS | 30.0% | |
| ATACACAAAATGGAATGAGT+TGG | + | chr3_4:26600874-26600893 | Msa0496210:CDS | 30.0% | |
| ATAAGATCATATACTCGTAC+TGG | + | chr3_4:26601050-26601069 | Msa0496210:intron | 30.0% | |
| !! | GATGACTTAGTTTTTGAACT+CGG | + | chr3_4:26601166-26601185 | Msa0496210:intron | 30.0% |
| TGCACATGTTGAATTAGATT+TGG | - | chr3_4:26601313-26601332 | None:intergenic | 30.0% | |
| AAACAAATTCATGTCAAGAG+TGG | + | chr3_4:26601335-26601354 | Msa0496210:intron | 30.0% | |
| AATTATAGGTGATCAAACTG+TGG | + | chr3_4:26601525-26601544 | Msa0496210:intron | 30.0% | |
| AAAGGAAATCCATTTGCATT+TGG | - | chr3_4:26601712-26601731 | None:intergenic | 30.0% | |
| !! | AATGCAAATGGATTTCCTTT+TGG | + | chr3_4:26601712-26601731 | Msa0496210:CDS | 30.0% |
| ! | TGTAATAGATTTTGTCCATC+CGG | - | chr3_4:26601961-26601980 | None:intergenic | 30.0% |
| TATATACATTTCCTTGCAAG+TGG | + | chr3_4:26602104-26602123 | Msa0496210:intron | 30.0% | |
| TGACTTTGACACACTATTTA+GGG | - | chr3_4:26602135-26602154 | None:intergenic | 30.0% | |
| TTGACTTTGACACACTATTT+AGG | - | chr3_4:26602136-26602155 | None:intergenic | 30.0% | |
| ATAGTGTGTCAAAGTCAAAA+TGG | + | chr3_4:26602138-26602157 | Msa0496210:three_prime_UTR | 30.0% | |
| TGTTATGAAGCAAAGAGGTA+AGG | - | chr3_4:26595513-26595532 | None:intergenic | 35.0% | |
| GTAGATAGTAGTTTCCTACA+TGG | - | chr3_4:26595695-26595714 | None:intergenic | 35.0% | |
| ! | GGAACCTTTTCTTAAAAGAG+TGG | + | chr3_4:26595835-26595854 | Msa0496210:CDS | 35.0% |
| ! | ATTTGTTTCTCTCATGGGTA+AGG | + | chr3_4:26595918-26595937 | Msa0496210:intron | 35.0% |
| ! | TTTGTTTCTCTCATGGGTAA+GGG | + | chr3_4:26595919-26595938 | Msa0496210:intron | 35.0% |
| ! | GGCGTGTATTCTCTAAAAAA+TGG | + | chr3_4:26596152-26596171 | Msa0496210:intron | 35.0% |
| AGCTAAAAAAGACCCATACT+AGG | + | chr3_4:26596206-26596225 | Msa0496210:intron | 35.0% | |
| GCTAAAAAAGACCCATACTA+GGG | + | chr3_4:26596207-26596226 | Msa0496210:intron | 35.0% | |
| GAGTTTATTCAACCCTAGTA+TGG | - | chr3_4:26596222-26596241 | None:intergenic | 35.0% | |
| AGAACAGAGACCATATCAAA+AGG | + | chr3_4:26596264-26596283 | Msa0496210:intron | 35.0% | |
| GAACAGAGACCATATCAAAA+GGG | + | chr3_4:26596265-26596284 | Msa0496210:intron | 35.0% | |
| AACAGAGACCATATCAAAAG+GGG | + | chr3_4:26596266-26596285 | Msa0496210:intron | 35.0% | |
| GGGCTTCATTCAAAATAACA+AGG | + | chr3_4:26596286-26596305 | Msa0496210:intron | 35.0% | |
| TAAATATATGCACAAGGTCC+GGG | + | chr3_4:26596459-26596478 | Msa0496210:intron | 35.0% | |
| !!! | TCTTTTTTTTTGTGGTGGTC+GGG | - | chr3_4:26596493-26596512 | None:intergenic | 35.0% |
| CTATTGTTGACCTCATCTAA+AGG | - | chr3_4:26596559-26596578 | None:intergenic | 35.0% | |
| TTAGATGAGGTCAACAATAG+TGG | + | chr3_4:26596559-26596578 | Msa0496210:intron | 35.0% | |
| ! | CCTTGCATTCTTGAGATTTT+GGG | - | chr3_4:26596653-26596672 | None:intergenic | 35.0% |
| ! | ACCTTGCATTCTTGAGATTT+TGG | - | chr3_4:26596654-26596673 | None:intergenic | 35.0% |
| TATTCATAGTTAGGTGGAGT+TGG | - | chr3_4:26596939-26596958 | None:intergenic | 35.0% | |
| TAATGAAGGTGACCTATTGA+TGG | - | chr3_4:26597125-26597144 | None:intergenic | 35.0% | |
| ATTAAGAATCCAAGCACCAA+GGG | + | chr3_4:26597141-26597160 | Msa0496210:CDS | 35.0% | |
| TTTGCTGAATGTGAGTTGTA+AGG | - | chr3_4:26597179-26597198 | None:intergenic | 35.0% | |
| TACAACTCACATTCAGCAAA+AGG | + | chr3_4:26597179-26597198 | Msa0496210:CDS | 35.0% | |
| CACAGGTATGATACTTACAT+TGG | + | chr3_4:26597219-26597238 | Msa0496210:intron | 35.0% | |
| AGATCAGATCTTGTAGAATG+GGG | - | chr3_4:26597269-26597288 | None:intergenic | 35.0% | |
| CAGATCAGATCTTGTAGAAT+GGG | - | chr3_4:26597270-26597289 | None:intergenic | 35.0% | |
| ACAGATCAGATCTTGTAGAA+TGG | - | chr3_4:26597271-26597290 | None:intergenic | 35.0% | |
| ! | ATTTGCTAAACGGTATGTAC+CGG | - | chr3_4:26597540-26597559 | None:intergenic | 35.0% |
| !! | GGTGTGTTTGATTTGCTAAA+CGG | - | chr3_4:26597550-26597569 | None:intergenic | 35.0% |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | + | chr3_4:26598031-26598050 | Msa0496210:intron | 35.0% |
| !! | GAAGACTTGTTGGAACAATT+TGG | - | chr3_4:26598398-26598417 | None:intergenic | 35.0% |
| !! | ATCTCTAGCTTTATAGGGTA+AGG | - | chr3_4:26598420-26598439 | None:intergenic | 35.0% |
| !! | CCACAATCTCTAGCTTTATA+GGG | - | chr3_4:26598425-26598444 | None:intergenic | 35.0% |
| !! | ACCACAATCTCTAGCTTTAT+AGG | - | chr3_4:26598426-26598445 | None:intergenic | 35.0% |
| ! | CAGTTCTCATTTTCATCATG+TGG | - | chr3_4:26598465-26598484 | None:intergenic | 35.0% |
| CACATGATGAAAATGAGAAC+TGG | + | chr3_4:26598463-26598482 | Msa0496210:CDS | 35.0% | |
| TACATAGTGAAGGAAAGAAC+TGG | + | chr3_4:26598507-26598526 | Msa0496210:CDS | 35.0% | |
| ACATAGTGAAGGAAAGAACT+GGG | + | chr3_4:26598508-26598527 | Msa0496210:CDS | 35.0% | |
| GAATTGAACCTTACTATGAG+AGG | + | chr3_4:26598552-26598571 | Msa0496210:CDS | 35.0% | |
| AGTTCACAGATAATTCTAGC+TGG | + | chr3_4:26598601-26598620 | Msa0496210:CDS | 35.0% | |
| ! | CAGATAATTCTAGCTGGATA+AGG | + | chr3_4:26598607-26598626 | Msa0496210:CDS | 35.0% |
| ! | CAAAGTGTTAGGATTCAAGA+AGG | + | chr3_4:26598675-26598694 | Msa0496210:CDS | 35.0% |
| !! | TTTGTTGTTAAGGATCATCG+TGG | + | chr3_4:26598711-26598730 | Msa0496210:CDS | 35.0% |
| !! | ATTTCGGGATTGCTATTTGT+CGG | - | chr3_4:26598896-26598915 | None:intergenic | 35.0% |
| ! | ATTTTTGCTCGGGATGATTT+CGG | - | chr3_4:26598912-26598931 | None:intergenic | 35.0% |
| !! | GGAGGGTATTGTTGTAATTA+AGG | - | chr3_4:26598954-26598973 | None:intergenic | 35.0% |
| TAATGCCACAATAAAAGGGA+GGG | - | chr3_4:26598990-26599009 | None:intergenic | 35.0% | |
| ATAATGCCACAATAAAAGGG+AGG | - | chr3_4:26598991-26599010 | None:intergenic | 35.0% | |
| ATTGTGGCATTATACTGTTC+GGG | + | chr3_4:26598998-26599017 | Msa0496210:intron | 35.0% | |
| !! | CATTGCTATTTGTCTCGAAA+TGG | - | chr3_4:26599040-26599059 | None:intergenic | 35.0% |
| ! | TTGTTGCGACACATTTTTGT+AGG | - | chr3_4:26599534-26599553 | None:intergenic | 35.0% |
| ! | TAAGCATTTTTGCCTCTCAA+TGG | + | chr3_4:26599605-26599624 | Msa0496210:intron | 35.0% |
| !! | ATAATAGGCTCTAGGAAATG+TGG | - | chr3_4:26599939-26599958 | None:intergenic | 35.0% |
| ! | TGAAATCAGATTTTGGGCAT+GGG | + | chr3_4:26600504-26600523 | Msa0496210:intron | 35.0% |
| GCATATTGGATTCAGAAGAA+TGG | - | chr3_4:26600622-26600641 | None:intergenic | 35.0% | |
| ! | TTGGAGAAGCATACACAAAA+TGG | + | chr3_4:26600864-26600883 | Msa0496210:CDS | 35.0% |
| ! | AATGAGTTGGAGGAAATTGA+TGG | + | chr3_4:26600887-26600906 | Msa0496210:CDS | 35.0% |
| ! | AACATTGCTTTGTTAACCCA+AGG | + | chr3_4:26600923-26600942 | Msa0496210:CDS | 35.0% |
| AATCCATGTATTCACGTAGT+TGG | + | chr3_4:26601115-26601134 | Msa0496210:intron | 35.0% | |
| ! | CATATTGGTCATATCGGTTA+AGG | - | chr3_4:26601258-26601277 | None:intergenic | 35.0% |
| !! | AGATTTGGATTTGTTGCAGT+CGG | - | chr3_4:26601298-26601317 | None:intergenic | 35.0% |
| GCCAAGCAATAATGTACAAA+TGG | + | chr3_4:26601645-26601664 | Msa0496210:CDS | 35.0% | |
| GCCATTTGTACATTATTGCT+TGG | - | chr3_4:26601649-26601668 | None:intergenic | 35.0% | |
| AGATGTATTAAATGCGGATC+CGG | + | chr3_4:26601818-26601837 | Msa0496210:exon | 35.0% | |
| GTTGTTGAATCACTTTCCTA+CGG | - | chr3_4:26601884-26601903 | None:intergenic | 35.0% | |
| TGGACAAAATCTATTACAGC+AGG | + | chr3_4:26601963-26601982 | Msa0496210:three_prime_UTR | 35.0% | |
| GACTTTGACACACTATTTAG+GGG | - | chr3_4:26602134-26602153 | None:intergenic | 35.0% | |
| GATCTCATTCGTTTGTCGTT+TGG | - | chr3_4:26595589-26595608 | None:intergenic | 40.0% | |
| AGTGCATACGAAGCTAATGA+AGG | - | chr3_4:26595619-26595638 | None:intergenic | 40.0% | |
| !! | GCAGAACTTTTTAGGAGCTT+TGG | + | chr3_4:26595814-26595833 | Msa0496210:CDS | 40.0% |
| GTTCTCTTAGCAGATGTCAT+GGG | - | chr3_4:26596249-26596268 | None:intergenic | 40.0% | |
| TGTTCTCTTAGCAGATGTCA+TGG | - | chr3_4:26596250-26596269 | None:intergenic | 40.0% | |
| ! | GAATGAAGCCCCTTTTGATA+TGG | - | chr3_4:26596277-26596296 | None:intergenic | 40.0% |
| ACACCTTCTTCGTAGAGATT+TGG | - | chr3_4:26596395-26596414 | None:intergenic | 40.0% | |
| ! | TGAGCTTATCTCAGTTGGTA+TGG | + | chr3_4:26596428-26596447 | Msa0496210:intron | 40.0% |
| AAATATATGCACAAGGTCCG+GGG | + | chr3_4:26596460-26596479 | Msa0496210:intron | 40.0% | |
| !!! | CTTTTTTTTTGTGGTGGTCG+GGG | - | chr3_4:26596492-26596511 | None:intergenic | 40.0% |
| GGATACTGGATTTAAGCATG+TGG | - | chr3_4:26596603-26596622 | None:intergenic | 40.0% | |
| TTGAAGTTGTGTTGGGATAC+TGG | - | chr3_4:26596617-26596636 | None:intergenic | 40.0% | |
| ! | TCGTGGTTTGAAGTTGTGTT+GGG | - | chr3_4:26596624-26596643 | None:intergenic | 40.0% |
| ! | ATCGTGGTTTGAAGTTGTGT+TGG | - | chr3_4:26596625-26596644 | None:intergenic | 40.0% |
| !!! | GAGATTTTGGGTTTACATCG+TGG | - | chr3_4:26596641-26596660 | None:intergenic | 40.0% |
| CCCAAAATCTCAAGAATGCA+AGG | + | chr3_4:26596650-26596669 | Msa0496210:intron | 40.0% | |
| CATTGCAGCTAGCTAACTAA+AGG | - | chr3_4:26596843-26596862 | None:intergenic | 40.0% | |
| ATTTGGTTAGGTGAGTGAAG+AGG | + | chr3_4:26597066-26597085 | Msa0496210:intron | 40.0% | |
| GGTGCTTGGATTCTTAATGA+AGG | - | chr3_4:26597139-26597158 | None:intergenic | 40.0% | |
| CATTAAGAATCCAAGCACCA+AGG | + | chr3_4:26597140-26597159 | Msa0496210:CDS | 40.0% | |
| CTGAATGTGAGTTGTAAGGT+TGG | - | chr3_4:26597175-26597194 | None:intergenic | 40.0% | |
| CATACCTGTGAAAATTGGGA+GGG | - | chr3_4:26597209-26597228 | None:intergenic | 40.0% | |
| TCATACCTGTGAAAATTGGG+AGG | - | chr3_4:26597210-26597229 | None:intergenic | 40.0% | |
| TTGAGTAGGGACTAATACTC+AGG | + | chr3_4:26598136-26598155 | Msa0496210:intron | 40.0% | |
| TGAGTAGGGACTAATACTCA+GGG | + | chr3_4:26598137-26598156 | Msa0496210:intron | 40.0% | |
| ! | AACTTCGTCCCAATTTTCAC+AGG | + | chr3_4:26598306-26598325 | Msa0496210:intron | 40.0% |
| ATAGGGTAAGGAAGACTTGT+TGG | - | chr3_4:26598408-26598427 | None:intergenic | 40.0% | |
| CCCTATAAAGCTAGAGATTG+TGG | + | chr3_4:26598422-26598441 | Msa0496210:CDS | 40.0% | |
| CTAGAGATTGTGGTACTTGA+TGG | + | chr3_4:26598432-26598451 | Msa0496210:CDS | 40.0% | |
| TTGAACCTTACTATGAGAGG+TGG | + | chr3_4:26598555-26598574 | Msa0496210:CDS | 40.0% | |
| CAATTCCACCTCTCATAGTA+AGG | - | chr3_4:26598563-26598582 | None:intergenic | 40.0% | |
| GATAAGGAGCAGGAAGTTTA+GGG | + | chr3_4:26598623-26598642 | Msa0496210:CDS | 40.0% | |
| ! | GAAGTTTAGGGTTGCAGTTA+TGG | + | chr3_4:26598635-26598654 | Msa0496210:CDS | 40.0% |
| ! | GTGGGAGTAATCAAAGTGTT+AGG | + | chr3_4:26598664-26598683 | Msa0496210:CDS | 40.0% |
| !! | GACTGAGGCATTTGTTGTTA+AGG | + | chr3_4:26598701-26598720 | Msa0496210:CDS | 40.0% |
| !! | TTTCGGGATTGCTATTTGTC+GGG | - | chr3_4:26598895-26598914 | None:intergenic | 40.0% |
| ! | TTTTTGCTCGGGATGATTTC+GGG | - | chr3_4:26598911-26598930 | None:intergenic | 40.0% |
| AATACCCTCCCATGTATTGT+GGG | + | chr3_4:26598964-26598983 | Msa0496210:intron | 40.0% | |
| TATACTGTTCGGGAATGCAT+CGG | + | chr3_4:26599008-26599027 | Msa0496210:intron | 40.0% | |
| AAACATCATCCACCAATGCT+TGG | + | chr3_4:26599740-26599759 | Msa0496210:CDS | 40.0% | |
| CATCTTTCCCTATCTTCTCT+AGG | - | chr3_4:26599781-26599800 | None:intergenic | 40.0% | |
| CTAGAGAAGATAGGGAAAGA+TGG | + | chr3_4:26599779-26599798 | Msa0496210:CDS | 40.0% | |
| AGCTTTCCACCACAAAATGA+TGG | + | chr3_4:26599802-26599821 | Msa0496210:CDS | 40.0% | |
| CACCACAAAATGATGGCTAA+GGG | + | chr3_4:26599809-26599828 | Msa0496210:CDS | 40.0% | |
| ACCACAAAATGATGGCTAAG+GGG | + | chr3_4:26599810-26599829 | Msa0496210:CDS | 40.0% | |
| TGATACTCCAAAGCTAAGAG+AGG | + | chr3_4:26599871-26599890 | Msa0496210:CDS | 40.0% | |
| ATGCTAGTGGCACATGTTAA+AGG | - | chr3_4:26600407-26600426 | None:intergenic | 40.0% | |
| ! | CTGAAATCAGATTTTGGGCA+TGG | + | chr3_4:26600503-26600522 | Msa0496210:intron | 40.0% |
| ! | GAAATCAGATTTTGGGCATG+GGG | + | chr3_4:26600505-26600524 | Msa0496210:intron | 40.0% |
| ! | CATGCAATGACTTGTGACAT+GGG | + | chr3_4:26600561-26600580 | Msa0496210:CDS | 40.0% |
| ! | ATGCAATGACTTGTGACATG+GGG | + | chr3_4:26600562-26600581 | Msa0496210:CDS | 40.0% |
| GAATGGTAAATTGAGGTCCA+CGG | - | chr3_4:26600605-26600624 | None:intergenic | 40.0% | |
| TGTGAGTCTTGAGTAGTAGA+TGG | - | chr3_4:26600728-26600747 | None:intergenic | 40.0% | |
| ! | CACAAAATGGAATGAGTTGG+AGG | + | chr3_4:26600877-26600896 | Msa0496210:CDS | 40.0% |
| ! | GATCATATACTCGTACTGGT+TGG | + | chr3_4:26601054-26601073 | Msa0496210:intron | 40.0% |
| CCAATACAACATGTCTTGTG+TGG | - | chr3_4:26601090-26601109 | None:intergenic | 40.0% | |
| CCACACAAGACATGTTGTAT+TGG | + | chr3_4:26601087-26601106 | Msa0496210:intron | 40.0% | |
| ATGCCAACTACGTGAATACA+TGG | - | chr3_4:26601121-26601140 | None:intergenic | 40.0% | |
| TATTCACGTAGTTGGCATGT+TGG | + | chr3_4:26601123-26601142 | Msa0496210:intron | 40.0% | |
| ACTGTTGCTGGATGATTGTT+TGG | - | chr3_4:26601559-26601578 | None:intergenic | 40.0% | |
| !! | TGCATTTGGTGTTGTGGTAT+AGG | - | chr3_4:26601698-26601717 | None:intergenic | 40.0% |
| ACCACAACACCAAATGCAAA+TGG | + | chr3_4:26601700-26601719 | Msa0496210:CDS | 40.0% | |
| !! | TCCATTTGCATTTGGTGTTG+TGG | - | chr3_4:26601704-26601723 | None:intergenic | 40.0% |
| !!! | GATTTCCTTTTGGCTTCACA+GGG | + | chr3_4:26601722-26601741 | Msa0496210:CDS | 40.0% |
| ! | ATCTTCAAGTTCTGTCCCTA+GGG | + | chr3_4:26601768-26601787 | Msa0496210:CDS | 40.0% |
| TGAACCCATTAATGTCCCTA+GGG | - | chr3_4:26601786-26601805 | None:intergenic | 40.0% | |
| CCTTCTTCGTAGAGATTTGG+TGG | - | chr3_4:26596392-26596411 | None:intergenic | 45.0% | |
| CCACCAAATCTCTACGAAGA+AGG | + | chr3_4:26596389-26596408 | Msa0496210:intron | 45.0% | |
| CATCGTGAGCTTATCTCAGT+TGG | + | chr3_4:26596423-26596442 | Msa0496210:intron | 45.0% | |
| CAGCTAGCTAACTAAAGGTG+GGG | - | chr3_4:26596838-26596857 | None:intergenic | 45.0% | |
| GCAGCTAGCTAACTAAAGGT+GGG | - | chr3_4:26596839-26596858 | None:intergenic | 45.0% | |
| TGCAGCTAGCTAACTAAAGG+TGG | - | chr3_4:26596840-26596859 | None:intergenic | 45.0% | |
| TATGCGGAGACTACTGCAAT+TGG | - | chr3_4:26596896-26596915 | None:intergenic | 45.0% | |
| GAAGAGGTGGATAGAGCAAT+TGG | + | chr3_4:26597082-26597101 | Msa0496210:CDS | 45.0% | |
| GCTGTCCATCTTCCATCAAT+AGG | + | chr3_4:26597110-26597129 | Msa0496210:CDS | 45.0% | |
| GGTGACCTATTGATGGAAGA+TGG | - | chr3_4:26597118-26597137 | None:intergenic | 45.0% | |
| ! | AAGGTTGGTTGTTGATCCCT+TGG | - | chr3_4:26597160-26597179 | None:intergenic | 45.0% |
| ! | CTTTCCCTCCCAATTTTCAC+AGG | + | chr3_4:26597202-26597221 | Msa0496210:CDS | 45.0% |
| AGTAGAATACTCGACGCTGA+AGG | + | chr3_4:26598330-26598349 | Msa0496210:CDS | 45.0% | |
| GGGAAGAGACCATTACTTTC+TGG | + | chr3_4:26598528-26598547 | Msa0496210:CDS | 45.0% | |
| AGAGGTGGAATTGCACCAAT+TGG | + | chr3_4:26598570-26598589 | Msa0496210:CDS | 45.0% | |
| GAGGTGGAATTGCACCAATT+GGG | + | chr3_4:26598571-26598590 | Msa0496210:CDS | 45.0% | |
| AGGTGGAATTGCACCAATTG+GGG | + | chr3_4:26598572-26598591 | Msa0496210:CDS | 45.0% | |
| GTGAACTCTATGTCCCCAAT+TGG | - | chr3_4:26598588-26598607 | None:intergenic | 45.0% | |
| ! | ATTCTAGCTGGATAAGGAGC+AGG | + | chr3_4:26598613-26598632 | Msa0496210:CDS | 45.0% |
| GGATAAGGAGCAGGAAGTTT+AGG | + | chr3_4:26598622-26598641 | Msa0496210:CDS | 45.0% | |
| TTGCAGTTATGGTGAGTCGT+GGG | + | chr3_4:26598646-26598665 | Msa0496210:CDS | 45.0% | |
| ! | GATTCAAGAAGGCATGACTG+AGG | + | chr3_4:26598686-26598705 | Msa0496210:CDS | 45.0% |
| CAATACCCTCCCATGTATTG+TGG | + | chr3_4:26598963-26598982 | Msa0496210:intron | 45.0% | |
| ATACTGTTCGGGAATGCATC+GGG | + | chr3_4:26599009-26599028 | Msa0496210:intron | 45.0% | |
| ! | CCTTAGCCATCATTTTGTGG+TGG | - | chr3_4:26599811-26599830 | None:intergenic | 45.0% |
| CCACCACAAAATGATGGCTA+AGG | + | chr3_4:26599808-26599827 | Msa0496210:CDS | 45.0% | |
| ! | TCCCCTTAGCCATCATTTTG+TGG | - | chr3_4:26599814-26599833 | None:intergenic | 45.0% |
| TGGGGATGTCTGATAGAATG+TGG | + | chr3_4:26600523-26600542 | Msa0496210:CDS | 45.0% | |
| ! | GCATGCAATGACTTGTGACA+TGG | + | chr3_4:26600560-26600579 | Msa0496210:CDS | 45.0% |
| ACATGGGGAGCAAGATCTAT+AGG | + | chr3_4:26600577-26600596 | Msa0496210:CDS | 45.0% | |
| ! | AGCAAGATCTATAGGTACCG+TGG | + | chr3_4:26600585-26600604 | Msa0496210:CDS | 45.0% |
| TTGGTTCAAGTACTCTCTGC+TGG | - | chr3_4:26600682-26600701 | None:intergenic | 45.0% | |
| TATGTTGCTGCTACTGTTGC+TGG | - | chr3_4:26601571-26601590 | None:intergenic | 45.0% | |
| TACAAATGGCTAGCAGTGAG+TGG | + | chr3_4:26601659-26601678 | Msa0496210:CDS | 45.0% | |
| !!! | GGATTTCCTTTTGGCTTCAC+AGG | + | chr3_4:26601721-26601740 | Msa0496210:CDS | 45.0% |
| TTCACAGGGTCACAATCAGA+TGG | + | chr3_4:26601736-26601755 | Msa0496210:CDS | 45.0% | |
| TCACAGGGTCACAATCAGAT+GGG | + | chr3_4:26601737-26601756 | Msa0496210:CDS | 45.0% | |
| ! | CATCTTCAAGTTCTGTCCCT+AGG | + | chr3_4:26601767-26601786 | Msa0496210:CDS | 45.0% |
| TCTGTCCCTAGGGACATTAA+TGG | + | chr3_4:26601778-26601797 | Msa0496210:CDS | 45.0% | |
| CTGTCCCTAGGGACATTAAT+GGG | + | chr3_4:26601779-26601798 | Msa0496210:CDS | 45.0% | |
| GTGAACCCATTAATGTCCCT+AGG | - | chr3_4:26601787-26601806 | None:intergenic | 45.0% | |
| !! | GGGACATTAATGGGTTCACA+AGG | + | chr3_4:26601788-26601807 | Msa0496210:CDS | 45.0% |
| TTGTCCATCCGGTCTTCAAT+CGG | - | chr3_4:26601950-26601969 | None:intergenic | 45.0% | |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3_4:26597800-26597819 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3_4:26597801-26597820 | None:intergenic | 5.0% |
| TCTCTCATGGGTAAGGGTTG+TGG | + | chr3_4:26595925-26595944 | Msa0496210:intron | 50.0% | |
| TGGTTAGGTGAGTGAAGAGG+TGG | + | chr3_4:26597069-26597088 | Msa0496210:intron | 50.0% | |
| !! | GTTGTTGATCCCTTGGTGCT+TGG | - | chr3_4:26597153-26597172 | None:intergenic | 50.0% |
| !! | CTGTCATGTGCTGCTTTGTC+CGG | + | chr3_4:26597518-26597537 | Msa0496210:intron | 50.0% |
| GTTGCAGTTATGGTGAGTCG+TGG | + | chr3_4:26598645-26598664 | Msa0496210:CDS | 50.0% | |
| !! | ACATCATCGCCAAGCATTGG+TGG | - | chr3_4:26599752-26599771 | None:intergenic | 50.0% |
| CACACATCATCGCCAAGCAT+TGG | - | chr3_4:26599755-26599774 | None:intergenic | 50.0% | |
| CAATGCTTGGCGATGATGTG+TGG | + | chr3_4:26599753-26599772 | Msa0496210:CDS | 50.0% | |
| TGTGGCGCCTAGAGAAGATA+GGG | + | chr3_4:26599771-26599790 | Msa0496210:CDS | 50.0% | |
| TGTGACCCTGTGAAGCCAAA+AGG | - | chr3_4:26601730-26601749 | None:intergenic | 50.0% | |
| CACAGGGTCACAATCAGATG+GGG | + | chr3_4:26601738-26601757 | Msa0496210:CDS | 50.0% | |
| CAGTAGTCGATCTTAGCCGT+AGG | + | chr3_4:26601865-26601884 | Msa0496210:three_prime_UTR | 50.0% | |
| ! | TTAGGGGTACACCACTTGCA+AGG | - | chr3_4:26602118-26602137 | None:intergenic | 50.0% |
| CTCATGGGTAAGGGTTGTGG+TGG | + | chr3_4:26595928-26595947 | Msa0496210:intron | 55.0% | |
| AGGGCCCACAATACATGGGA+GGG | - | chr3_4:26598971-26598990 | None:intergenic | 55.0% | |
| AGGGAGGGCCCACAATACAT+GGG | - | chr3_4:26598975-26598994 | None:intergenic | 55.0% | |
| AAGGGAGGGCCCACAATACA+TGG | - | chr3_4:26598976-26598995 | None:intergenic | 55.0% | |
| ! | GTGGGCCCTCCCTTTTATTG+TGG | + | chr3_4:26598982-26599001 | Msa0496210:intron | 55.0% |
| GTGTGGCGCCTAGAGAAGAT+AGG | + | chr3_4:26599770-26599789 | Msa0496210:CDS | 55.0% | |
| AGCAGTTACAGCAGGCGATC+CGG | - | chr3_4:26601840-26601859 | None:intergenic | 55.0% | |
| CTGCGTGAAGCAGTTACAGC+AGG | - | chr3_4:26601848-26601867 | None:intergenic | 55.0% | |
| ! | CTCAGCCACCGATTGAAGAC+CGG | + | chr3_4:26601939-26601958 | Msa0496210:three_prime_UTR | 55.0% |
| TCCATCCGGTCTTCAATCGG+TGG | - | chr3_4:26601947-26601966 | None:intergenic | 55.0% | |
| GAGGGCCCACAATACATGGG+AGG | - | chr3_4:26598972-26598991 | None:intergenic | 60.0% | |
| ! | GCCACCGATTGAAGACCGGA+TGG | + | chr3_4:26601943-26601962 | Msa0496210:three_prime_UTR | 60.0% |
| GGTGGTCGGGGTGTGAACCC+CGG | - | chr3_4:26596480-26596499 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 26595476 | 26602181 | 26595476 | ID=Msa0496210;Name=Msa0496210 |
| chr3_4 | mRNA | 26595476 | 26602181 | 26595476 | ID=Msa0496210-mRNA-1;Parent=Msa0496210;Name=Msa0496210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=68|1|1|1|0.87|0.77|9|308|488 |
| chr3_4 | exon | 26595476 | 26595629 | 26595476 | ID=Msa0496210-mRNA-1:exon:6361;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26595781 | 26595856 | 26595781 | ID=Msa0496210-mRNA-1:exon:6362;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26597076 | 26597223 | 26597076 | ID=Msa0496210-mRNA-1:exon:6363;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26598328 | 26598738 | 26598328 | ID=Msa0496210-mRNA-1:exon:6364;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26599732 | 26599892 | 26599732 | ID=Msa0496210-mRNA-1:exon:6365;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26600513 | 26600710 | 26600513 | ID=Msa0496210-mRNA-1:exon:6366;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26600845 | 26600944 | 26600845 | ID=Msa0496210-mRNA-1:exon:6367;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26601533 | 26602068 | 26601533 | ID=Msa0496210-mRNA-1:exon:6368;Parent=Msa0496210-mRNA-1 |
| chr3_4 | exon | 26602123 | 26602181 | 26602123 | ID=Msa0496210-mRNA-1:exon:6369;Parent=Msa0496210-mRNA-1 |
| chr3_4 | five_prime_UTR | 26595476 | 26595543 | 26595476 | ID=Msa0496210-mRNA-1:five_prime_utr;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26595544 | 26595629 | 26595544 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26595781 | 26595856 | 26595781 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26597076 | 26597223 | 26597076 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26598328 | 26598738 | 26598328 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26599732 | 26599892 | 26599732 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26600513 | 26600710 | 26600513 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26600845 | 26600944 | 26600845 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | CDS | 26601533 | 26601819 | 26601533 | ID=Msa0496210-mRNA-1:cds;Parent=Msa0496210-mRNA-1 |
| chr3_4 | three_prime_UTR | 26601820 | 26602068 | 26601820 | ID=Msa0496210-mRNA-1:three_prime_utr;Parent=Msa0496210-mRNA-1 |
| chr3_4 | three_prime_UTR | 26602123 | 26602181 | 26602123 | ID=Msa0496210-mRNA-1:three_prime_utr;Parent=Msa0496210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
