Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496640 | XP_013459353.1 | 96.939 | 392 | 11 | 1 | 1 | 392 | 1 | 391 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496640 | sp|P93841|ISPE_SOLLC | 75.263 | 380 | 92 | 1 | 6 | 383 | 8 | 387 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496640 | A0A072UU85 | 96.939 | 392 | 11 | 1 | 1 | 392 | 1 | 391 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009290 | Msa0496640 | -0.826249 | 3.008839e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496640 | MtrunA17_Chr3g0091341 | 96.939 | 392 | 11 | 1 | 1 | 392 | 1 | 391 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496640 | AT2G26930.1 | 78.979 | 333 | 70 | 0 | 54 | 386 | 42 | 374 | 0.0 | 561 |
Find 122 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATTCATTTGGATAAA+AGG | 0.121284 | 3_4:+28065813 | Msa0496640:intron |
| TTAGTTGAAGATTGTTAATT+AGG | 0.200506 | 3_4:-28063354 | None:intergenic |
| GCCCCTTGATGATAGAAATT+TGG | 0.246366 | 3_4:+28065524 | Msa0496640:CDS |
| TTAAGGCGCTTAATCTTTAC+AGG | 0.263692 | 3_4:+28065645 | Msa0496640:CDS |
| CGGGCACTGAAAAGTTCTTT+TGG | 0.268514 | 3_4:+28065675 | Msa0496640:CDS |
| GCAATGCTGCAACTGCATTA+TGG | 0.274231 | 3_4:+28065870 | Msa0496640:CDS |
| GCCTTGTCCACTAATGTGTC+TGG | 0.281117 | 3_4:+28065498 | Msa0496640:CDS |
| GATGTTTGCATTAATGATTT+AGG | 0.283211 | 3_4:+28067011 | Msa0496640:CDS |
| CTGTAGCTTTGAATGAAAAT+TGG | 0.285901 | 3_4:-28063504 | None:intergenic |
| TTGGCCTGAATTGAGGTAAA+TGG | 0.290713 | 3_4:-28063472 | None:intergenic |
| TGCCTCTCTAGTGAGAAAAT+TGG | 0.299369 | 3_4:-28068191 | None:intergenic |
| GTGATTAACTTACATGAAAC+AGG | 0.300913 | 3_4:-28064892 | None:intergenic |
| CAATCTCACTTGACCATTCC+TGG | 0.306728 | 3_4:-28065937 | None:intergenic |
| TTCTTCCAGAAAACAATTAG+AGG | 0.325356 | 3_4:+28063571 | Msa0496640:CDS |
| CCATCCATTTACCTCAATTC+AGG | 0.339378 | 3_4:+28063468 | Msa0496640:CDS |
| CAATGCTGCAACTGCATTAT+GGG | 0.341992 | 3_4:+28065871 | Msa0496640:CDS |
| AGCTTGTTTATCCTTTCATC+AGG | 0.346891 | 3_4:-28064664 | None:intergenic |
| GAACAAAGTAAGCCTTGAAA+TGG | 0.355469 | 3_4:-28064713 | None:intergenic |
| TAGAGATAAACTTTCATATA+TGG | 0.358191 | 3_4:+28068320 | Msa0496640:three_prime_UTR |
| TGTTGACCCTTCAGTATTGC+TGG | 0.358418 | 3_4:+28066959 | Msa0496640:CDS |
| CCCTCTTGTTGGTTATTCTC+AGG | 0.358444 | 3_4:-28064844 | None:intergenic |
| GGAAGCACAATTGTTGGAAT+TGG | 0.361037 | 3_4:+28067816 | Msa0496640:CDS |
| GGTTCTCATAAAACCTCAAC+AGG | 0.389815 | 3_4:+28066767 | Msa0496640:CDS |
| TGTATGTTCTCAGATTCATT+TGG | 0.395758 | 3_4:+28065805 | Msa0496640:intron |
| TGGAGTTCTTTCTCCGTGGC+AGG | 0.403243 | 3_4:-28065917 | None:intergenic |
| GTTCCAACTGGGGCAGGACT+TGG | 0.404852 | 3_4:+28065836 | Msa0496640:CDS |
| TGAAAATTGGAAGACCCATT+TGG | 0.405091 | 3_4:-28063491 | None:intergenic |
| GGAAGACGGGTATCATGATT+TGG | 0.405148 | 3_4:+28064865 | Msa0496640:CDS |
| CAGGAATGGTCAAGTGAGAT+TGG | 0.412432 | 3_4:+28065938 | Msa0496640:CDS |
| CCAACTGGGGCAGGACTTGG+TGG | 0.412562 | 3_4:+28065839 | Msa0496640:CDS |
| TCAGATTCATTTGGATAAAA+GGG | 0.420419 | 3_4:+28065814 | Msa0496640:intron |
| ATACCCGTCTTCCCTCTTGT+TGG | 0.422369 | 3_4:-28064855 | None:intergenic |
| ACAAGGAGGCTCCCATTTCA+AGG | 0.435850 | 3_4:+28064701 | Msa0496640:CDS |
| TTGGATAAAAGGGTTCCAAC+TGG | 0.440000 | 3_4:+28065824 | Msa0496640:CDS |
| TTACCTCAATTCAGGCCAAA+TGG | 0.449918 | 3_4:+28063476 | Msa0496640:CDS |
| TAAATGAATTGTGGAGGATC+AGG | 0.455794 | 3_4:-28067843 | None:intergenic |
| CTCGCCTCGACCAGTGCAAT+AGG | 0.456777 | 3_4:-28065996 | None:intergenic |
| CCTTGTCCACTAATGTGTCT+GGG | 0.457064 | 3_4:+28065499 | Msa0496640:CDS |
| AAAAGGGTTCCAACTGGGGC+AGG | 0.461526 | 3_4:+28065830 | Msa0496640:CDS |
| AATAATTGGTTTACCTTGCA+CGG | 0.465784 | 3_4:-28064739 | None:intergenic |
| TTACCAAATTTCTATCATCA+AGG | 0.466355 | 3_4:-28065527 | None:intergenic |
| TGCAGCGGAAGCACAATTGT+TGG | 0.467813 | 3_4:+28067810 | Msa0496640:intron |
| TATGATGCTGTCTTTATGTC+AGG | 0.470938 | 3_4:+28067415 | Msa0496640:CDS |
| TACCTCAATTCAGGCCAAAT+GGG | 0.475891 | 3_4:+28063477 | Msa0496640:CDS |
| GTTTCAGTCGTTTGAGAGAA+GGG | 0.480550 | 3_4:-28067363 | None:intergenic |
| ATTAGTGGACAAGGCATCCT+TGG | 0.484452 | 3_4:-28065490 | None:intergenic |
| CGAATTACAGCAGCTGGTCG+TGG | 0.485929 | 3_4:+28067388 | Msa0496640:CDS |
| GACCCATTTGGCCTGAATTG+AGG | 0.485977 | 3_4:-28063479 | None:intergenic |
| AAGGGTCAACATTACTAGTC+TGG | 0.486866 | 3_4:-28066947 | None:intergenic |
| TACCGAGACATATTCTTGTC+AGG | 0.490658 | 3_4:+28067879 | Msa0496640:CDS |
| GAAATAAATGACTCAGATGT+AGG | 0.492730 | 3_4:-28068244 | None:intergenic |
| TGAGAGTAGTTATTTATCCA+TGG | 0.496727 | 3_4:+28063394 | Msa0496640:exon |
| TACTTTGTTCTCTCCGTGCA+AGG | 0.497980 | 3_4:+28064726 | Msa0496640:CDS |
| TGGATAAAAGGGTTCCAACT+GGG | 0.499633 | 3_4:+28065825 | Msa0496640:CDS |
| TTCTAATGATACAGCGTCTA+CGG | 0.499858 | 3_4:+28066919 | Msa0496640:intron |
| TGCCACGGAGAAAGAACTCC+AGG | 0.503166 | 3_4:+28065919 | Msa0496640:CDS |
| AAAATAGTGAAATAATGAAA+AGG | 0.504843 | 3_4:+28068447 | Msa0496640:three_prime_UTR |
| TACCAAATTTCTATCATCAA+GGG | 0.510983 | 3_4:-28065526 | None:intergenic |
| ACCCTTCAGTATTGCTGGAG+AGG | 0.511324 | 3_4:+28066964 | Msa0496640:CDS |
| GTTATCATTTGCAGAACCTC+CGG | 0.511513 | 3_4:+28067327 | Msa0496640:intron |
| TGTTTCAGTCGTTTGAGAGA+AGG | 0.518235 | 3_4:-28067364 | None:intergenic |
| AACAAAGTAAGCCTTGAAAT+GGG | 0.519272 | 3_4:-28064712 | None:intergenic |
| ACTGGGGCAGGACTTGGTGG+TGG | 0.520149 | 3_4:+28065842 | Msa0496640:CDS |
| GTTATCTTCGGATATTCCAA+TGG | 0.521878 | 3_4:+28066746 | Msa0496640:CDS |
| GCAGCCTATTGCACTGGTCG+AGG | 0.528989 | 3_4:+28065992 | Msa0496640:CDS |
| ATGGATGGTTCTTCTGAAAG+TGG | 0.529200 | 3_4:-28063453 | None:intergenic |
| TGGATGGTTCTTCTGAAAGT+GGG | 0.532145 | 3_4:-28063452 | None:intergenic |
| AACGGTGCAGCCTATTGCAC+TGG | 0.532541 | 3_4:+28065986 | Msa0496640:CDS |
| AAACAGCGAATTACAGCAGC+TGG | 0.534386 | 3_4:+28067382 | Msa0496640:CDS |
| GGGCACCCCAGACACATTAG+TGG | 0.535033 | 3_4:-28065505 | None:intergenic |
| GAATATCCGAAGATAACAGC+GGG | 0.536725 | 3_4:-28066740 | None:intergenic |
| AAGGTGACAAAGAGAACTTA+AGG | 0.545135 | 3_4:-28065461 | None:intergenic |
| TTCTGAAAGTGGGGATAGAG+TGG | 0.551464 | 3_4:-28063442 | None:intergenic |
| CCACCAAGTCCTGCCCCAGT+TGG | 0.554625 | 3_4:-28065839 | None:intergenic |
| AACCATAAGGTGATCAGTCT+AGG | 0.558994 | 3_4:+28065432 | Msa0496640:intron |
| TCATCATCGTAAATGAATTG+TGG | 0.563101 | 3_4:-28067852 | None:intergenic |
| TAATCTTTACAGGAAGAAGA+CGG | 0.565856 | 3_4:+28065655 | Msa0496640:CDS |
| ATAACCAACAAGAGGGAAGA+CGG | 0.568717 | 3_4:+28064851 | Msa0496640:CDS |
| TCTTGTATATGATAATAAGA+TGG | 0.571073 | 3_4:+28068289 | Msa0496640:three_prime_UTR |
| TTCAACTGCAGAAGTCTACA+AGG | 0.572084 | 3_4:+28066794 | Msa0496640:CDS |
| GCTTGTTTATCCTTTCATCA+GGG | 0.572094 | 3_4:-28064663 | None:intergenic |
| TCTGGAAGAATCAGAAACCA+TGG | 0.575316 | 3_4:-28063558 | None:intergenic |
| CCCAGACACATTAGTGGACA+AGG | 0.576073 | 3_4:-28065499 | None:intergenic |
| AATGATACAGCGTCTACGGT+TGG | 0.583644 | 3_4:+28066923 | Msa0496640:intron |
| GTTCAGTGGTTGTCCTGCCA+CGG | 0.586464 | 3_4:+28065904 | Msa0496640:CDS |
| TAACCAACAAGAGGGAAGAC+GGG | 0.586466 | 3_4:+28064852 | Msa0496640:CDS |
| ATCCTCTCCAGCAATACTGA+AGG | 0.587330 | 3_4:-28066966 | None:intergenic |
| ACAATTCATTTACGATGATG+AGG | 0.587793 | 3_4:+28067854 | Msa0496640:CDS |
| GTTTGTCAAAGTCAAAGCCA+TGG | 0.589156 | 3_4:+28063541 | Msa0496640:CDS |
| CGGAGAAAGAACTCCAGGAA+TGG | 0.589868 | 3_4:+28065924 | Msa0496640:CDS |
| ACCAAATTTCTATCATCAAG+GGG | 0.591274 | 3_4:-28065525 | None:intergenic |
| TCCTGAGAATAACCAACAAG+AGG | 0.592621 | 3_4:+28064843 | Msa0496640:CDS |
| GGATAAAAGGGTTCCAACTG+GGG | 0.594768 | 3_4:+28065826 | Msa0496640:CDS |
| CCTGAGAATAACCAACAAGA+GGG | 0.595343 | 3_4:+28064844 | Msa0496640:CDS |
| AATCTTTACAGGAAGAAGAC+GGG | 0.596753 | 3_4:+28065656 | Msa0496640:CDS |
| GCTTTGACTTTGACAAACTG+AGG | 0.596833 | 3_4:-28063536 | None:intergenic |
| AAGAAACTGAGAAGAAGCCA+TGG | 0.611350 | 3_4:-28063411 | None:intergenic |
| GCAGTTGAACAAGCCTGTTG+AGG | 0.611379 | 3_4:-28066780 | None:intergenic |
| CTTGTCCACTAATGTGTCTG+GGG | 0.613317 | 3_4:+28065500 | Msa0496640:CDS |
| GACCTGACAAGAATATGTCT+CGG | 0.618619 | 3_4:-28067881 | None:intergenic |
| TCCTCTCCAGCAATACTGAA+GGG | 0.620110 | 3_4:-28066965 | None:intergenic |
| TCAGATGTAGGAGTTGAAGC+AGG | 0.621134 | 3_4:-28068232 | None:intergenic |
| AAGGCATCCTTGGTATTCGA+AGG | 0.624720 | 3_4:-28065480 | None:intergenic |
| TTTGTCACCTTCGAATACCA+AGG | 0.625046 | 3_4:+28065473 | Msa0496640:CDS |
| ATGCTGTCTTTATGTCAGGA+AGG | 0.626781 | 3_4:+28067419 | Msa0496640:CDS |
| GAAGGGAGAACTTCAAACGC+CGG | 0.627869 | 3_4:-28067346 | None:intergenic |
| TGGGCAGCAAATCAGTTCAG+TGG | 0.635251 | 3_4:+28065890 | Msa0496640:CDS |
| TTCCTGGAGTTCTTTCTCCG+TGG | 0.642458 | 3_4:-28065921 | None:intergenic |
| GGATGGTTCTTCTGAAAGTG+GGG | 0.644147 | 3_4:-28063451 | None:intergenic |
| TCATCGTAAATGAATTGTGG+AGG | 0.645589 | 3_4:-28067849 | None:intergenic |
| TTGTGTATGACCCTGATGAA+AGG | 0.653956 | 3_4:+28064653 | Msa0496640:CDS |
| TGATTAACTTACATGAAACA+GGG | 0.656638 | 3_4:-28064891 | None:intergenic |
| CTATTGCACTGGTCGAGGCG+AGG | 0.657650 | 3_4:+28065997 | Msa0496640:CDS |
| CTGGAGAGGATTTCAACGAG+TGG | 0.659780 | 3_4:+28066978 | Msa0496640:CDS |
| AGCTGATCAAATTGACAAGG+AGG | 0.670021 | 3_4:+28064687 | Msa0496640:CDS |
| TCACTAGAGAGGCAAATGAG+TGG | 0.688683 | 3_4:+28068200 | Msa0496640:CDS |
| CCTGAATTGAGGTAAATGGA+TGG | 0.691703 | 3_4:-28063468 | None:intergenic |
| GCTAGCTGATCAAATTGACA+AGG | 0.699538 | 3_4:+28064684 | Msa0496640:CDS |
| GGGAGAACTTCAAACGCCGG+AGG | 0.707690 | 3_4:-28067343 | None:intergenic |
| GGAATATCCGAAGATAACAG+CGG | 0.710787 | 3_4:-28066741 | None:intergenic |
| ATATCCGAAGATAACAGCGG+GGG | 0.717806 | 3_4:-28066738 | None:intergenic |
| AATATCCGAAGATAACAGCG+GGG | 0.771671 | 3_4:-28066739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCCTTAATTTTATTTTTTT+AGG | + | chr3_4:28066448-28066467 | Msa0496640:intron | 10.0% |
| !! | TACCTAAAAAAATAAAATTA+AGG | - | chr3_4:28066453-28066472 | None:intergenic | 10.0% |
| !! | AATGTGAAGTTATTTATATT+TGG | + | chr3_4:28063932-28063951 | Msa0496640:intron | 15.0% |
| !!! | TAATCAATTTTACATATGTT+TGG | + | chr3_4:28064075-28064094 | Msa0496640:intron | 15.0% |
| !!! | AATATACCAAAATTACTTTT+TGG | - | chr3_4:28064381-28064400 | None:intergenic | 15.0% |
| !!! | AAAGTAATTTTGGTATATTT+TGG | + | chr3_4:28064382-28064401 | Msa0496640:intron | 15.0% |
| !!! | AAGTAATTTTGGTATATTTT+GGG | + | chr3_4:28064383-28064402 | Msa0496640:intron | 15.0% |
| !! | GCTTAAATATTTAATTATGA+AGG | + | chr3_4:28066499-28066518 | Msa0496640:intron | 15.0% |
| !! | TAAAAGTGAAAAAATAAAGA+AGG | - | chr3_4:28067067-28067086 | None:intergenic | 15.0% |
| !!! | TTATTTTTTCACTTTTACTT+TGG | + | chr3_4:28067070-28067089 | Msa0496640:intron | 15.0% |
| !! | ACAAGATATTGAAAAATATT+AGG | - | chr3_4:28067464-28067483 | None:intergenic | 15.0% |
| !! | AAATTAACTAAAAAAATGTG+CGG | - | chr3_4:28068357-28068376 | None:intergenic | 15.0% |
| !! | AAAATAGTGAAATAATGAAA+AGG | + | chr3_4:28068447-28068466 | Msa0496640:three_prime_UTR | 15.0% |
| !! | TGAAAAGGAAAAAAAAATTA+AGG | + | chr3_4:28068462-28068481 | Msa0496640:three_prime_UTR | 15.0% |
| !! | TTAGTTGAAGATTGTTAATT+AGG | - | chr3_4:28063357-28063376 | None:intergenic | 20.0% |
| !! | ATTAATTCAAACTATAGCTT+CGG | - | chr3_4:28064025-28064044 | None:intergenic | 20.0% |
| !!! | AGTAATTTTGGTATATTTTG+GGG | + | chr3_4:28064384-28064403 | Msa0496640:intron | 20.0% |
| !! | TAACTTAGAATCAATTCTAT+AGG | - | chr3_4:28064415-28064434 | None:intergenic | 20.0% |
| !!! | TACTTTACATTTTCTTTTTG+AGG | + | chr3_4:28065316-28065335 | Msa0496640:intron | 20.0% |
| !!! | ACTTTACATTTTCTTTTTGA+GGG | + | chr3_4:28065317-28065336 | Msa0496640:intron | 20.0% |
| !! | TTAGTCCAATAAAAAATTTG+TGG | - | chr3_4:28065357-28065376 | None:intergenic | 20.0% |
| !! | ATATTACCTTATTAAATGTC+CGG | - | chr3_4:28065595-28065614 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTACAGATTATTA+AGG | + | chr3_4:28065628-28065647 | Msa0496640:intron | 20.0% |
| !! | AATCATATAGTATTATCCAT+TGG | - | chr3_4:28066145-28066164 | None:intergenic | 20.0% |
| !! | TTGAAGCTTAAAATAAATCA+CGG | - | chr3_4:28066282-28066301 | None:intergenic | 20.0% |
| !! | TTCTTGTACTAGATTATTAA+AGG | - | chr3_4:28066383-28066402 | None:intergenic | 20.0% |
| !!! | ATTTGTGATTTTAAAGAATG+TGG | - | chr3_4:28066859-28066878 | None:intergenic | 20.0% |
| !! | ACATAAGATGATAAACTTTA+GGG | - | chr3_4:28067769-28067788 | None:intergenic | 20.0% |
| !! | TACATAAGATGATAAACTTT+AGG | - | chr3_4:28067770-28067789 | None:intergenic | 20.0% |
| !! | TCTTGTATATGATAATAAGA+TGG | + | chr3_4:28068289-28068308 | Msa0496640:three_prime_UTR | 20.0% |
| !! | TAGAGATAAACTTTCATATA+TGG | + | chr3_4:28068320-28068339 | Msa0496640:three_prime_UTR | 20.0% |
| !! | AAAGGAAAAAAAAATTAAGG+CGG | + | chr3_4:28068465-28068484 | Msa0496640:three_prime_UTR | 20.0% |
| ! | TAGCATTTGTTTAACTGAAT+TGG | + | chr3_4:28063659-28063678 | Msa0496640:intron | 25.0% |
| ! | TTTGTTTAACTGAATTGGTT+AGG | + | chr3_4:28063664-28063683 | Msa0496640:intron | 25.0% |
| !! | CTTAGAATCAAATTTTCTCA+CGG | - | chr3_4:28063870-28063889 | None:intergenic | 25.0% |
| !!! | ACATATGTTTGGTTTTAGAT+AGG | + | chr3_4:28064086-28064105 | Msa0496640:intron | 25.0% |
| ! | TGTAAACAATCAAACATGTT+AGG | - | chr3_4:28064143-28064162 | None:intergenic | 25.0% |
| ! | AACGTAAAATGATTTATGCT+CGG | - | chr3_4:28064500-28064519 | None:intergenic | 25.0% |
| !! | AAACCAATTATTCTTTTGCT+TGG | + | chr3_4:28064750-28064769 | Msa0496640:intron | 25.0% |
| !! | AACCAATTATTCTTTTGCTT+GGG | + | chr3_4:28064751-28064770 | Msa0496640:intron | 25.0% |
| ! | TGATTAACTTACATGAAACA+GGG | - | chr3_4:28064894-28064913 | None:intergenic | 25.0% |
| ! | CATGTAAGTTAATCACAATT+TGG | + | chr3_4:28064899-28064918 | Msa0496640:intron | 25.0% |
| ! | TCACAATTTGGTAAATTCTT+CGG | + | chr3_4:28064911-28064930 | Msa0496640:intron | 25.0% |
| ! | AGTCATCAAAATTACAAATC+AGG | + | chr3_4:28065001-28065020 | Msa0496640:intron | 25.0% |
| ! | AAATGTAAAGTAGTGACTAA+TGG | - | chr3_4:28065308-28065327 | None:intergenic | 25.0% |
| ! | TACCAAATTTCTATCATCAA+GGG | - | chr3_4:28065529-28065548 | None:intergenic | 25.0% |
| ! | TTACCAAATTTCTATCATCA+AGG | - | chr3_4:28065530-28065549 | None:intergenic | 25.0% |
| ! | AAGTGCATCTTTATATTACT+TGG | + | chr3_4:28065751-28065770 | Msa0496640:intron | 25.0% |
| ! | TCAGATTCATTTGGATAAAA+GGG | + | chr3_4:28065814-28065833 | Msa0496640:intron | 25.0% |
| ! | CTATCCATGATAAAAATTCT+GGG | - | chr3_4:28066413-28066432 | None:intergenic | 25.0% |
| !! | AATTTTTATCATGGATAGGA+AGG | + | chr3_4:28066415-28066434 | Msa0496640:intron | 25.0% |
| !! | ATTTTTATCATGGATAGGAA+GGG | + | chr3_4:28066416-28066435 | Msa0496640:intron | 25.0% |
| ! | GATGTTTGCATTAATGATTT+AGG | + | chr3_4:28067011-28067030 | Msa0496640:CDS | 25.0% |
| ! | AAGTTAACAATGTCAATGAT+AGG | - | chr3_4:28067231-28067250 | None:intergenic | 25.0% |
| ! | GAATTAGAACTACGATATAA+AGG | - | chr3_4:28067595-28067614 | None:intergenic | 25.0% |
| ! | TAATATTTACTTTGCTCTCA+TGG | + | chr3_4:28067718-28067737 | Msa0496640:intron | 25.0% |
| ! | CATAAGATGATAAACTTTAG+GGG | - | chr3_4:28067768-28067787 | None:intergenic | 25.0% |
| ! | ACGATTTCCTTCTATAAAAT+TGG | + | chr3_4:28068015-28068034 | Msa0496640:intron | 25.0% |
| ! | CGATTTCCTTCTATAAAATT+GGG | + | chr3_4:28068016-28068035 | Msa0496640:intron | 25.0% |
| !! | TCAATTCCCAATTTTATAGA+AGG | - | chr3_4:28068025-28068044 | None:intergenic | 25.0% |
| ! | TCTGCAATTGGAAATATTAA+AGG | - | chr3_4:28068169-28068188 | None:intergenic | 25.0% |
| ATTAGGTGTGTATGAAAAAG+TGG | - | chr3_4:28063340-28063359 | None:intergenic | 30.0% | |
| TGAGAGTAGTTATTTATCCA+TGG | + | chr3_4:28063394-28063413 | Msa0496640:exon | 30.0% | |
| !! | CTGTAGCTTTGAATGAAAAT+TGG | - | chr3_4:28063507-28063526 | None:intergenic | 30.0% |
| TTCTTCCAGAAAACAATTAG+AGG | + | chr3_4:28063571-28063590 | Msa0496640:CDS | 30.0% | |
| ! | ACAAACCTCTAATTGTTTTC+TGG | - | chr3_4:28063579-28063598 | None:intergenic | 30.0% |
| TTCAAAACATAAGAAACGAC+AGG | - | chr3_4:28063618-28063637 | None:intergenic | 30.0% | |
| ATTCAGTGTAATTGTATGTG+TGG | - | chr3_4:28063751-28063770 | None:intergenic | 30.0% | |
| ATGAAGCATGAATACAAACA+CGG | - | chr3_4:28063827-28063846 | None:intergenic | 30.0% | |
| !!! | TACACCTCTAGAATCAATTT+TGG | - | chr3_4:28064112-28064131 | None:intergenic | 30.0% |
| TGATTGTGAGTGAATTGATT+CGG | - | chr3_4:28064324-28064343 | None:intergenic | 30.0% | |
| TCTCCTTTAAATTCACTTCT+GGG | + | chr3_4:28064351-28064370 | Msa0496640:intron | 30.0% | |
| ! | TTTTCTTCGTAATTGTGTGT+TGG | + | chr3_4:28064620-28064639 | Msa0496640:intron | 30.0% |
| AACAAAGTAAGCCTTGAAAT+GGG | - | chr3_4:28064715-28064734 | None:intergenic | 30.0% | |
| ! | AATAATTGGTTTACCTTGCA+CGG | - | chr3_4:28064742-28064761 | None:intergenic | 30.0% |
| GTGATTAACTTACATGAAAC+AGG | - | chr3_4:28064895-28064914 | None:intergenic | 30.0% | |
| !! | ATCTGTCTACTTTTCTCTAA+GGG | - | chr3_4:28064981-28065000 | None:intergenic | 30.0% |
| !! | TATCTGTCTACTTTTCTCTA+AGG | - | chr3_4:28064982-28065001 | None:intergenic | 30.0% |
| ACCAAAAATTTAAACACCGA+AGG | - | chr3_4:28065054-28065073 | None:intergenic | 30.0% | |
| !!! | CGGTGTTTAAATTTTTGGTA+CGG | + | chr3_4:28065055-28065074 | Msa0496640:intron | 30.0% |
| !!! | GCGTTCCACAAATTTTTTAT+TGG | + | chr3_4:28065349-28065368 | Msa0496640:intron | 30.0% |
| ACCAAATTTCTATCATCAAG+GGG | - | chr3_4:28065528-28065547 | None:intergenic | 30.0% | |
| ! | TTTTCGACATTATCTTCTAC+CGG | + | chr3_4:28065573-28065592 | Msa0496640:intron | 30.0% |
| TAATCTTTACAGGAAGAAGA+CGG | + | chr3_4:28065655-28065674 | Msa0496640:CDS | 30.0% | |
| TGTATGTTCTCAGATTCATT+TGG | + | chr3_4:28065805-28065824 | Msa0496640:intron | 30.0% | |
| CTCAGATTCATTTGGATAAA+AGG | + | chr3_4:28065813-28065832 | Msa0496640:intron | 30.0% | |
| AATCTGATTTCAAGAAAGGA+TGG | - | chr3_4:28066042-28066061 | None:intergenic | 30.0% | |
| GCAGGAATTAGAAATATCAA+AGG | + | chr3_4:28066062-28066081 | Msa0496640:intron | 30.0% | |
| CATATAGTATTATCCATTGG+AGG | - | chr3_4:28066142-28066161 | None:intergenic | 30.0% | |
| GATTATTCTGATCTGTACAA+TGG | + | chr3_4:28066161-28066180 | Msa0496640:intron | 30.0% | |
| ATAAATCTATTCGATCAGAG+TGG | - | chr3_4:28066235-28066254 | None:intergenic | 30.0% | |
| ACTCTGATCGAATAGATTTA+TGG | + | chr3_4:28066234-28066253 | Msa0496640:intron | 30.0% | |
| ! | GTAGATTTTGTGAAAATCAG+TGG | + | chr3_4:28066305-28066324 | Msa0496640:intron | 30.0% |
| CCTATCCATGATAAAAATTC+TGG | - | chr3_4:28066414-28066433 | None:intergenic | 30.0% | |
| ! | CCAGAATTTTTATCATGGAT+AGG | + | chr3_4:28066411-28066430 | Msa0496640:intron | 30.0% |
| ! | TACAAGGTATCTGAATTTCA+AGG | + | chr3_4:28066810-28066829 | Msa0496640:intron | 30.0% |
| ! | ACAAGGTATCTGAATTTCAA+GGG | + | chr3_4:28066811-28066830 | Msa0496640:intron | 30.0% |
| AACTCCAGTATTCAAAGAAT+GGG | - | chr3_4:28067498-28067517 | None:intergenic | 30.0% | |
| TAACTCCAGTATTCAAAGAA+TGG | - | chr3_4:28067499-28067518 | None:intergenic | 30.0% | |
| !! | CGTAGTTCTAATTCTGTTAA+AGG | + | chr3_4:28067601-28067620 | Msa0496640:intron | 30.0% |
| AGTAAATATTAAACGACGCT+CGG | - | chr3_4:28067709-28067728 | None:intergenic | 30.0% | |
| TCATCATCGTAAATGAATTG+TGG | - | chr3_4:28067855-28067874 | None:intergenic | 30.0% | |
| ACAATTCATTTACGATGATG+AGG | + | chr3_4:28067854-28067873 | Msa0496640:CDS | 30.0% | |
| ! | CTGAAGTTAGTTACTTTACA+TGG | + | chr3_4:28068122-28068141 | Msa0496640:intron | 30.0% |
| GAAATAAATGACTCAGATGT+AGG | - | chr3_4:28068247-28068266 | None:intergenic | 30.0% | |
| GTGTATGAAAAAGTGGTATG+AGG | - | chr3_4:28063333-28063352 | None:intergenic | 35.0% | |
| TGAAAATTGGAAGACCCATT+TGG | - | chr3_4:28063494-28063513 | None:intergenic | 35.0% | |
| AACATAAGAAACGACAGGAA+GGG | - | chr3_4:28063613-28063632 | None:intergenic | 35.0% | |
| AAACATAAGAAACGACAGGA+AGG | - | chr3_4:28063614-28063633 | None:intergenic | 35.0% | |
| GTAATTGTATGTGTGGATGT+CGG | - | chr3_4:28063744-28063763 | None:intergenic | 35.0% | |
| TTCATGCTTCATAGTTAGTG+TGG | + | chr3_4:28063835-28063854 | Msa0496640:intron | 35.0% | |
| !! | ATAGCTTCGGATTCTAGAAT+TGG | - | chr3_4:28064012-28064031 | None:intergenic | 35.0% |
| ! | TAGGCCAAAATTGATTCTAG+AGG | + | chr3_4:28064105-28064124 | Msa0496640:intron | 35.0% |
| GTCTCCTTTAAATTCACTTC+TGG | + | chr3_4:28064350-28064369 | Msa0496640:intron | 35.0% | |
| TCTCCCAGAAGTGAATTTAA+AGG | - | chr3_4:28064357-28064376 | None:intergenic | 35.0% | |
| ! | GGAGAGCCAAAAAGTAATTT+TGG | + | chr3_4:28064372-28064391 | Msa0496640:intron | 35.0% |
| GCTTGTTTATCCTTTCATCA+GGG | - | chr3_4:28064666-28064685 | None:intergenic | 35.0% | |
| ! | AGCTTGTTTATCCTTTCATC+AGG | - | chr3_4:28064667-28064686 | None:intergenic | 35.0% |
| GAACAAAGTAAGCCTTGAAA+TGG | - | chr3_4:28064716-28064735 | None:intergenic | 35.0% | |
| CTCCCAAGCAAAAGAATAAT+TGG | - | chr3_4:28064756-28064775 | None:intergenic | 35.0% | |
| !!! | GCCTTCGGTGTTTAAATTTT+TGG | + | chr3_4:28065050-28065069 | Msa0496640:intron | 35.0% |
| !! | TTGTTTCTGCTATGCAATTG+CGG | - | chr3_4:28065137-28065156 | None:intergenic | 35.0% |
| TCTTCTACCGAATAGAAATG+CGG | - | chr3_4:28065260-28065279 | None:intergenic | 35.0% | |
| ! | CTCATCTTTTCTGAACCATA+AGG | + | chr3_4:28065419-28065438 | Msa0496640:intron | 35.0% |
| AAGGTGACAAAGAGAACTTA+AGG | - | chr3_4:28065464-28065483 | None:intergenic | 35.0% | |
| CTTCTACCGGACATTTAATA+AGG | + | chr3_4:28065586-28065605 | Msa0496640:intron | 35.0% | |
| ! | TTAAGGCGCTTAATCTTTAC+AGG | + | chr3_4:28065645-28065664 | Msa0496640:CDS | 35.0% |
| AATCTTTACAGGAAGAAGAC+GGG | + | chr3_4:28065656-28065675 | Msa0496640:CDS | 35.0% | |
| ! | GTTCCCTTCTTTTTCTCTAA+CGG | + | chr3_4:28065968-28065987 | Msa0496640:CDS | 35.0% |
| AAAGGATGGTACCTAGTATT+TGG | - | chr3_4:28066028-28066047 | None:intergenic | 35.0% | |
| CTGCAATCTGATTTCAAGAA+AGG | - | chr3_4:28066046-28066065 | None:intergenic | 35.0% | |
| CTTTCTTGAAATCAGATTGC+AGG | + | chr3_4:28066044-28066063 | Msa0496640:intron | 35.0% | |
| ACTAGACCAAAGATCAATCT+CGG | - | chr3_4:28066358-28066377 | None:intergenic | 35.0% | |
| ! | GACACCCAGAATTTTTATCA+TGG | + | chr3_4:28066406-28066425 | Msa0496640:intron | 35.0% |
| !! | GAAGGTATTCATCTACGAAT+CGG | + | chr3_4:28066517-28066536 | Msa0496640:intron | 35.0% |
| ! | AAGGTATTCATCTACGAATC+GGG | + | chr3_4:28066518-28066537 | Msa0496640:intron | 35.0% |
| GTTATCTTCGGATATTCCAA+TGG | + | chr3_4:28066746-28066765 | Msa0496640:CDS | 35.0% | |
| !! | TGAGGTTTTATGAGAACCAT+TGG | - | chr3_4:28066765-28066784 | None:intergenic | 35.0% |
| CTGAATTTCAAGGGTAGTAA+TGG | + | chr3_4:28066820-28066839 | Msa0496640:intron | 35.0% | |
| TTCTAATGATACAGCGTCTA+CGG | + | chr3_4:28066919-28066938 | Msa0496640:intron | 35.0% | |
| ! | AGTTGATGTTATGATGCATG+TGG | - | chr3_4:28067275-28067294 | None:intergenic | 35.0% |
| ! | GTTCTGCAAATGATAACGAA+GGG | - | chr3_4:28067324-28067343 | None:intergenic | 35.0% |
| TATGATGCTGTCTTTATGTC+AGG | + | chr3_4:28067415-28067434 | Msa0496640:CDS | 35.0% | |
| TTTCCCCATTCTTTGAATAC+TGG | + | chr3_4:28067491-28067510 | Msa0496640:intron | 35.0% | |
| ACTCCAGTATTCAAAGAATG+GGG | - | chr3_4:28067497-28067516 | None:intergenic | 35.0% | |
| ! | ATTTCTAGAAAATCCGCTAC+TGG | - | chr3_4:28067543-28067562 | None:intergenic | 35.0% |
| ACGAAGATTACGTTTACTGA+AGG | + | chr3_4:28067634-28067653 | Msa0496640:intron | 35.0% | |
| TCTTAACATGTATCATGCAG+CGG | + | chr3_4:28067795-28067814 | Msa0496640:intron | 35.0% | |
| TAAATGAATTGTGGAGGATC+AGG | - | chr3_4:28067846-28067865 | None:intergenic | 35.0% | |
| TCATCGTAAATGAATTGTGG+AGG | - | chr3_4:28067852-28067871 | None:intergenic | 35.0% | |
| GTGAGATATGTACTGAGATT+AGG | - | chr3_4:28067954-28067973 | None:intergenic | 35.0% | |
| !!! | CACATTTTAGCTTCTGGATA+AGG | - | chr3_4:28067981-28068000 | None:intergenic | 35.0% |
| !!! | GTGAAACACATTTTAGCTTC+TGG | - | chr3_4:28067987-28068006 | None:intergenic | 35.0% |
| TCTGATAGAGATCACATAGT+TGG | + | chr3_4:28068073-28068092 | Msa0496640:intron | 35.0% | |
| ! | ACTTTACATGGCTTCTAAAG+TGG | + | chr3_4:28068134-28068153 | Msa0496640:intron | 35.0% |
| AGAAAATTGGCATCTGCAAT+TGG | - | chr3_4:28068181-28068200 | None:intergenic | 35.0% | |
| AAAAAATTAAGGCGGAGCTT+TGG | + | chr3_4:28068473-28068492 | Msa0496640:three_prime_UTR | 35.0% | |
| AAGAAACTGAGAAGAAGCCA+TGG | - | chr3_4:28063414-28063433 | None:intergenic | 40.0% | |
| ! | TGGATGGTTCTTCTGAAAGT+GGG | - | chr3_4:28063455-28063474 | None:intergenic | 40.0% |
| ! | ATGGATGGTTCTTCTGAAAG+TGG | - | chr3_4:28063456-28063475 | None:intergenic | 40.0% |
| CCTGAATTGAGGTAAATGGA+TGG | - | chr3_4:28063471-28063490 | None:intergenic | 40.0% | |
| CCATCCATTTACCTCAATTC+AGG | + | chr3_4:28063468-28063487 | Msa0496640:CDS | 40.0% | |
| TTGGCCTGAATTGAGGTAAA+TGG | - | chr3_4:28063475-28063494 | None:intergenic | 40.0% | |
| TTACCTCAATTCAGGCCAAA+TGG | + | chr3_4:28063476-28063495 | Msa0496640:CDS | 40.0% | |
| TACCTCAATTCAGGCCAAAT+GGG | + | chr3_4:28063477-28063496 | Msa0496640:CDS | 40.0% | |
| ! | GCTTTGACTTTGACAAACTG+AGG | - | chr3_4:28063539-28063558 | None:intergenic | 40.0% |
| GTTTGTCAAAGTCAAAGCCA+TGG | + | chr3_4:28063541-28063560 | Msa0496640:CDS | 40.0% | |
| TCTGGAAGAATCAGAAACCA+TGG | - | chr3_4:28063561-28063580 | None:intergenic | 40.0% | |
| ACATAAGAAACGACAGGAAG+GGG | - | chr3_4:28063612-28063631 | None:intergenic | 40.0% | |
| TAGGTAGTGTATACGAAGCA+CGG | + | chr3_4:28063683-28063702 | Msa0496640:intron | 40.0% | |
| TGCTTCATAGTTAGTGTGGT+TGG | + | chr3_4:28063839-28063858 | Msa0496640:intron | 40.0% | |
| ! | TCGGACTAAAAGTGAGTTGA+AGG | - | chr3_4:28064305-28064324 | None:intergenic | 40.0% |
| ! | CCACAATGTCAATGGTTCTA+TGG | - | chr3_4:28064571-28064590 | None:intergenic | 40.0% |
| CCATAGAACCATTGACATTG+TGG | + | chr3_4:28064568-28064587 | Msa0496640:intron | 40.0% | |
| TTGTGTATGACCCTGATGAA+AGG | + | chr3_4:28064653-28064672 | Msa0496640:CDS | 40.0% | |
| GCTAGCTGATCAAATTGACA+AGG | + | chr3_4:28064684-28064703 | Msa0496640:CDS | 40.0% | |
| AGCTGATCAAATTGACAAGG+AGG | + | chr3_4:28064687-28064706 | Msa0496640:CDS | 40.0% | |
| TCCTGAGAATAACCAACAAG+AGG | + | chr3_4:28064843-28064862 | Msa0496640:CDS | 40.0% | |
| CCTGAGAATAACCAACAAGA+GGG | + | chr3_4:28064844-28064863 | Msa0496640:CDS | 40.0% | |
| ATAACCAACAAGAGGGAAGA+CGG | + | chr3_4:28064851-28064870 | Msa0496640:CDS | 40.0% | |
| !! | TCCTGAGTTGGTAATTCTGA+TGG | + | chr3_4:28065087-28065106 | Msa0496640:intron | 40.0% |
| TCCATCAGAATTACCAACTC+AGG | - | chr3_4:28065091-28065110 | None:intergenic | 40.0% | |
| CTATTCACTTTCAACAGCTG+TGG | + | chr3_4:28065182-28065201 | Msa0496640:intron | 40.0% | |
| AACCATAAGGTGATCAGTCT+AGG | + | chr3_4:28065432-28065451 | Msa0496640:intron | 40.0% | |
| TTTGTCACCTTCGAATACCA+AGG | + | chr3_4:28065473-28065492 | Msa0496640:CDS | 40.0% | |
| ! | GCCCCTTGATGATAGAAATT+TGG | + | chr3_4:28065524-28065543 | Msa0496640:CDS | 40.0% |
| !!! | GGGCACTGAAAAGTTCTTTT+GGG | + | chr3_4:28065676-28065695 | Msa0496640:CDS | 40.0% |
| TTGGATAAAAGGGTTCCAAC+TGG | + | chr3_4:28065824-28065843 | Msa0496640:CDS | 40.0% | |
| TGGATAAAAGGGTTCCAACT+GGG | + | chr3_4:28065825-28065844 | Msa0496640:CDS | 40.0% | |
| CAATGCTGCAACTGCATTAT+GGG | + | chr3_4:28065871-28065890 | Msa0496640:CDS | 40.0% | |
| GCACCGTTAGAGAAAAAGAA+GGG | - | chr3_4:28065974-28065993 | None:intergenic | 40.0% | |
| TGCACCGTTAGAGAAAAAGA+AGG | - | chr3_4:28065975-28065994 | None:intergenic | 40.0% | |
| ATTGTCAATGTGTCCTCCAA+TGG | + | chr3_4:28066126-28066145 | Msa0496640:intron | 40.0% | |
| ACATCACCGAGATTGATCTT+TGG | + | chr3_4:28066349-28066368 | Msa0496640:intron | 40.0% | |
| !! | TAACTTGCTTAACCCAATGC+AGG | + | chr3_4:28066627-28066646 | Msa0496640:intron | 40.0% |
| AATATCCGAAGATAACAGCG+GGG | - | chr3_4:28066742-28066761 | None:intergenic | 40.0% | |
| GAATATCCGAAGATAACAGC+GGG | - | chr3_4:28066743-28066762 | None:intergenic | 40.0% | |
| GGAATATCCGAAGATAACAG+CGG | - | chr3_4:28066744-28066763 | None:intergenic | 40.0% | |
| GGTTCTCATAAAACCTCAAC+AGG | + | chr3_4:28066767-28066786 | Msa0496640:CDS | 40.0% | |
| TTCAACTGCAGAAGTCTACA+AGG | + | chr3_4:28066794-28066813 | Msa0496640:CDS | 40.0% | |
| AAGGGTCAACATTACTAGTC+TGG | - | chr3_4:28066950-28066969 | None:intergenic | 40.0% | |
| ! | GGTTCTGCAAATGATAACGA+AGG | - | chr3_4:28067325-28067344 | None:intergenic | 40.0% |
| GTTATCATTTGCAGAACCTC+CGG | + | chr3_4:28067327-28067346 | Msa0496640:intron | 40.0% | |
| GTTTCAGTCGTTTGAGAGAA+GGG | - | chr3_4:28067366-28067385 | None:intergenic | 40.0% | |
| TGTTTCAGTCGTTTGAGAGA+AGG | - | chr3_4:28067367-28067386 | None:intergenic | 40.0% | |
| ATGCTGTCTTTATGTCAGGA+AGG | + | chr3_4:28067419-28067438 | Msa0496640:CDS | 40.0% | |
| CGAGATGAAATTACCAGTAG+CGG | + | chr3_4:28067527-28067546 | Msa0496640:intron | 40.0% | |
| !!! | CACTTCTTCGCTGATTTTAG+TGG | - | chr3_4:28067670-28067689 | None:intergenic | 40.0% |
| ! | GGAAGCACAATTGTTGGAAT+TGG | + | chr3_4:28067816-28067835 | Msa0496640:CDS | 40.0% |
| TACCGAGACATATTCTTGTC+AGG | + | chr3_4:28067879-28067898 | Msa0496640:CDS | 40.0% | |
| GACCTGACAAGAATATGTCT+CGG | - | chr3_4:28067884-28067903 | None:intergenic | 40.0% | |
| GCATAAAGCCTAAGTCATTG+AGG | - | chr3_4:28067909-28067928 | None:intergenic | 40.0% | |
| ! | TGCCAATTTTCTCACTAGAG+AGG | + | chr3_4:28068189-28068208 | Msa0496640:CDS | 40.0% |
| TGCCTCTCTAGTGAGAAAAT+TGG | - | chr3_4:28068194-28068213 | None:intergenic | 40.0% | |
| ! | TTCTGAAAGTGGGGATAGAG+TGG | - | chr3_4:28063445-28063464 | None:intergenic | 45.0% |
| ! | GGATGGTTCTTCTGAAAGTG+GGG | - | chr3_4:28063454-28063473 | None:intergenic | 45.0% |
| ATCTGTGTTTGTGTCGTGTC+TGG | + | chr3_4:28063798-28063817 | Msa0496640:intron | 45.0% | |
| CGTGCATACCACAATGTCAA+TGG | - | chr3_4:28064579-28064598 | None:intergenic | 45.0% | |
| TACTTTGTTCTCTCCGTGCA+AGG | + | chr3_4:28064726-28064745 | Msa0496640:CDS | 45.0% | |
| ! | CCCTCTTGTTGGTTATTCTC+AGG | - | chr3_4:28064847-28064866 | None:intergenic | 45.0% |
| TAACCAACAAGAGGGAAGAC+GGG | + | chr3_4:28064852-28064871 | Msa0496640:CDS | 45.0% | |
| GGAAGACGGGTATCATGATT+TGG | + | chr3_4:28064865-28064884 | Msa0496640:CDS | 45.0% | |
| CGGACTAATCTATCCTGAGT+TGG | + | chr3_4:28065075-28065094 | Msa0496640:intron | 45.0% | |
| TGCATAGCAGAAACAACCTC+TGG | + | chr3_4:28065141-28065160 | Msa0496640:intron | 45.0% | |
| GTGATTGTAGCCACGAATTG+CGG | + | chr3_4:28065204-28065223 | Msa0496640:intron | 45.0% | |
| TGCAATTGTTCCGCAATTCG+TGG | - | chr3_4:28065217-28065236 | None:intergenic | 45.0% | |
| GCAGCTGAATAGACCTTTCA+CGG | + | chr3_4:28065234-28065253 | Msa0496640:intron | 45.0% | |
| AATAGAAATGCGGCCGTGAA+AGG | - | chr3_4:28065250-28065269 | None:intergenic | 45.0% | |
| TTCACGGCCGCATTTCTATT+CGG | + | chr3_4:28065250-28065269 | Msa0496640:intron | 45.0% | |
| AATGGCAAACTGCAGATCGT+GGG | - | chr3_4:28065290-28065309 | None:intergenic | 45.0% | |
| TAATGGCAAACTGCAGATCG+TGG | - | chr3_4:28065291-28065310 | None:intergenic | 45.0% | |
| CACCTAGACTGATCACCTTA+TGG | - | chr3_4:28065437-28065456 | None:intergenic | 45.0% | |
| ! | AAGGCATCCTTGGTATTCGA+AGG | - | chr3_4:28065483-28065502 | None:intergenic | 45.0% |
| ! | ATTAGTGGACAAGGCATCCT+TGG | - | chr3_4:28065493-28065512 | None:intergenic | 45.0% |
| CCTTGTCCACTAATGTGTCT+GGG | + | chr3_4:28065499-28065518 | Msa0496640:CDS | 45.0% | |
| CTTGTCCACTAATGTGTCTG+GGG | + | chr3_4:28065500-28065519 | Msa0496640:CDS | 45.0% | |
| !!! | CGGGCACTGAAAAGTTCTTT+TGG | + | chr3_4:28065675-28065694 | Msa0496640:CDS | 45.0% |
| GGATAAAAGGGTTCCAACTG+GGG | + | chr3_4:28065826-28065845 | Msa0496640:CDS | 45.0% | |
| GCAATGCTGCAACTGCATTA+TGG | + | chr3_4:28065870-28065889 | Msa0496640:CDS | 45.0% | |
| CAATCTCACTTGACCATTCC+TGG | - | chr3_4:28065940-28065959 | None:intergenic | 45.0% | |
| CAGGAATGGTCAAGTGAGAT+TGG | + | chr3_4:28065938-28065957 | Msa0496640:CDS | 45.0% | |
| GAGTTGACAACCTTGACTAC+AGG | + | chr3_4:28066588-28066607 | Msa0496640:intron | 45.0% | |
| TGTGTGAGTTCCTGTAGTCA+AGG | - | chr3_4:28066601-28066620 | None:intergenic | 45.0% | |
| TTAACCCAATGCAGGAAGCT+AGG | + | chr3_4:28066635-28066654 | Msa0496640:intron | 45.0% | |
| AATGCCTAGCTTCCTGCATT+GGG | - | chr3_4:28066642-28066661 | None:intergenic | 45.0% | |
| TAATGCCTAGCTTCCTGCAT+TGG | - | chr3_4:28066643-28066662 | None:intergenic | 45.0% | |
| TATTCCCCCGCTGTTATCTT+CGG | + | chr3_4:28066734-28066753 | Msa0496640:CDS | 45.0% | |
| ATATCCGAAGATAACAGCGG+GGG | - | chr3_4:28066741-28066760 | None:intergenic | 45.0% | |
| AATGATACAGCGTCTACGGT+TGG | + | chr3_4:28066923-28066942 | Msa0496640:intron | 45.0% | |
| TGTTGACCCTTCAGTATTGC+TGG | + | chr3_4:28066959-28066978 | Msa0496640:CDS | 45.0% | |
| TCCTCTCCAGCAATACTGAA+GGG | - | chr3_4:28066968-28066987 | None:intergenic | 45.0% | |
| ATCCTCTCCAGCAATACTGA+AGG | - | chr3_4:28066969-28066988 | None:intergenic | 45.0% | |
| AAACAGCGAATTACAGCAGC+TGG | + | chr3_4:28067382-28067401 | Msa0496640:CDS | 45.0% | |
| TCACTAGAGAGGCAAATGAG+TGG | + | chr3_4:28068200-28068219 | Msa0496640:CDS | 45.0% | |
| TCAGATGTAGGAGTTGAAGC+AGG | - | chr3_4:28068235-28068254 | None:intergenic | 45.0% | |
| GACCCATTTGGCCTGAATTG+AGG | - | chr3_4:28063482-28063501 | None:intergenic | 50.0% | |
| TAAGAAACGACAGGAAGGGG+AGG | - | chr3_4:28063609-28063628 | None:intergenic | 50.0% | |
| TACGAAGCACGGACACTCTT+CGG | + | chr3_4:28063694-28063713 | Msa0496640:intron | 50.0% | |
| GTATGTGTGGATGTCGGTGT+CGG | - | chr3_4:28063738-28063757 | None:intergenic | 50.0% | |
| ACAAGGAGGCTCCCATTTCA+AGG | + | chr3_4:28064701-28064720 | Msa0496640:CDS | 50.0% | |
| ATACCCGTCTTCCCTCTTGT+TGG | - | chr3_4:28064858-28064877 | None:intergenic | 50.0% | |
| GCCTTGTCCACTAATGTGTC+TGG | + | chr3_4:28065498-28065517 | Msa0496640:CDS | 50.0% | |
| ! | CCCAGACACATTAGTGGACA+AGG | - | chr3_4:28065502-28065521 | None:intergenic | 50.0% |
| TGGGCAGCAAATCAGTTCAG+TGG | + | chr3_4:28065890-28065909 | Msa0496640:CDS | 50.0% | |
| TTCCTGGAGTTCTTTCTCCG+TGG | - | chr3_4:28065924-28065943 | None:intergenic | 50.0% | |
| CGGAGAAAGAACTCCAGGAA+TGG | + | chr3_4:28065924-28065943 | Msa0496640:CDS | 50.0% | |
| GCGAGGTGAGTCCAAATACT+AGG | + | chr3_4:28066014-28066033 | Msa0496640:intron | 50.0% | |
| GCAGTTGAACAAGCCTGTTG+AGG | - | chr3_4:28066783-28066802 | None:intergenic | 50.0% | |
| ACCCTTCAGTATTGCTGGAG+AGG | + | chr3_4:28066964-28066983 | Msa0496640:CDS | 50.0% | |
| CTGGAGAGGATTTCAACGAG+TGG | + | chr3_4:28066978-28066997 | Msa0496640:CDS | 50.0% | |
| GAAGGGAGAACTTCAAACGC+CGG | - | chr3_4:28067349-28067368 | None:intergenic | 50.0% | |
| ! | TGCAGCGGAAGCACAATTGT+TGG | + | chr3_4:28067810-28067829 | Msa0496640:intron | 50.0% |
| CAGGTCAGCCTCAATGACTT+AGG | + | chr3_4:28067898-28067917 | Msa0496640:intron | 50.0% | |
| GGACATGTTAGTCCCTCCAC+CGG | + | chr3_4:28065022-28065041 | Msa0496640:intron | 55.0% | |
| GACATGTTAGTCCCTCCACC+GGG | + | chr3_4:28065023-28065042 | Msa0496640:intron | 55.0% | |
| ACATGTTAGTCCCTCCACCG+GGG | + | chr3_4:28065024-28065043 | Msa0496640:intron | 55.0% | |
| TAAACACCGAAGGCAGTCCC+CGG | - | chr3_4:28065044-28065063 | None:intergenic | 55.0% | |
| AGCAAAGAGCAACGCACCAG+AGG | - | chr3_4:28065160-28065179 | None:intergenic | 55.0% | |
| TCTGGTGCGTTGCTCTTTGC+TGG | + | chr3_4:28065159-28065178 | Msa0496640:intron | 55.0% | |
| AAAAGGGTTCCAACTGGGGC+AGG | + | chr3_4:28065830-28065849 | Msa0496640:CDS | 55.0% | |
| GTTCAGTGGTTGTCCTGCCA+CGG | + | chr3_4:28065904-28065923 | Msa0496640:CDS | 55.0% | |
| TGGAGTTCTTTCTCCGTGGC+AGG | - | chr3_4:28065920-28065939 | None:intergenic | 55.0% | |
| TGCCACGGAGAAAGAACTCC+AGG | + | chr3_4:28065919-28065938 | Msa0496640:CDS | 55.0% | |
| AACGGTGCAGCCTATTGCAC+TGG | + | chr3_4:28065986-28066005 | Msa0496640:CDS | 55.0% | |
| CCTTCGCGCGAACTAGATCA+TGG | - | chr3_4:28067143-28067162 | None:intergenic | 55.0% | |
| ! | CCATGATCTAGTTCGCGCGA+AGG | + | chr3_4:28067140-28067159 | Msa0496640:intron | 55.0% |
| CGAATTACAGCAGCTGGTCG+TGG | + | chr3_4:28067388-28067407 | Msa0496640:CDS | 55.0% | |
| GCACGGACACTCTTCGGACT+AGG | + | chr3_4:28063700-28063719 | Msa0496640:intron | 60.0% | |
| GGCAAACTGCAGATCGTGGG+CGG | - | chr3_4:28065287-28065306 | None:intergenic | 60.0% | |
| GGGCACCCCAGACACATTAG+TGG | - | chr3_4:28065508-28065527 | None:intergenic | 60.0% | |
| GTTCCAACTGGGGCAGGACT+TGG | + | chr3_4:28065836-28065855 | Msa0496640:CDS | 60.0% | |
| ! | GCAGCCTATTGCACTGGTCG+AGG | + | chr3_4:28065992-28066011 | Msa0496640:CDS | 60.0% |
| CTCGCCTCGACCAGTGCAAT+AGG | - | chr3_4:28065999-28066018 | None:intergenic | 60.0% | |
| ! | CTATTGCACTGGTCGAGGCG+AGG | + | chr3_4:28065997-28066016 | Msa0496640:CDS | 60.0% |
| GGGAGAACTTCAAACGCCGG+AGG | - | chr3_4:28067346-28067365 | None:intergenic | 60.0% | |
| CCACCAAGTCCTGCCCCAGT+TGG | - | chr3_4:28065842-28065861 | None:intergenic | 65.0% | |
| CCAACTGGGGCAGGACTTGG+TGG | + | chr3_4:28065839-28065858 | Msa0496640:CDS | 65.0% | |
| !! | ACTGGGGCAGGACTTGGTGG+TGG | + | chr3_4:28065842-28065861 | Msa0496640:CDS | 65.0% |
| CGAAGGCAGTCCCCGGTGGA+GGG | - | chr3_4:28065037-28065056 | None:intergenic | 70.0% | |
| CCTCCACCGGGGACTGCCTT+CGG | + | chr3_4:28065035-28065054 | Msa0496640:intron | 70.0% | |
| ACACCGAAGGCAGTCCCCGG+TGG | - | chr3_4:28065041-28065060 | None:intergenic | 70.0% | |
| CCGAAGGCAGTCCCCGGTGG+AGG | - | chr3_4:28065038-28065057 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 28063276 | 28068518 | 28063276 | ID=Msa0496640;Name=Msa0496640 |
| chr3_4 | mRNA | 28063276 | 28068518 | 28063276 | ID=Msa0496640-mRNA-1;Parent=Msa0496640;Name=Msa0496640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=137|1|1|1|1|1|11|239|392 |
| chr3_4 | exon | 28063276 | 28063592 | 28063276 | ID=Msa0496640-mRNA-1:exon:6527;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28064652 | 28064747 | 28064652 | ID=Msa0496640-mRNA-1:exon:6528;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28064833 | 28064901 | 28064833 | ID=Msa0496640-mRNA-1:exon:6529;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28065441 | 28065545 | 28065441 | ID=Msa0496640-mRNA-1:exon:6530;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28065641 | 28065697 | 28065641 | ID=Msa0496640-mRNA-1:exon:6531;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28065818 | 28066018 | 28065818 | ID=Msa0496640-mRNA-1:exon:6532;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28066723 | 28066815 | 28066723 | ID=Msa0496640-mRNA-1:exon:6533;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28066933 | 28067032 | 28066933 | ID=Msa0496640-mRNA-1:exon:6534;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28067341 | 28067440 | 28067341 | ID=Msa0496640-mRNA-1:exon:6535;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28067815 | 28067900 | 28067815 | ID=Msa0496640-mRNA-1:exon:6536;Parent=Msa0496640-mRNA-1 |
| chr3_4 | exon | 28068188 | 28068518 | 28068188 | ID=Msa0496640-mRNA-1:exon:6537;Parent=Msa0496640-mRNA-1 |
| chr3_4 | five_prime_UTR | 28063276 | 28063412 | 28063276 | ID=Msa0496640-mRNA-1:five_prime_utr;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28063413 | 28063592 | 28063413 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28064652 | 28064747 | 28064652 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28064833 | 28064901 | 28064833 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28065441 | 28065545 | 28065441 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28065641 | 28065697 | 28065641 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28065818 | 28066018 | 28065818 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28066723 | 28066815 | 28066723 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28066933 | 28067032 | 28066933 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28067341 | 28067440 | 28067341 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28067815 | 28067900 | 28067815 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | CDS | 28068188 | 28068279 | 28068188 | ID=Msa0496640-mRNA-1:cds;Parent=Msa0496640-mRNA-1 |
| chr3_4 | three_prime_UTR | 28068280 | 28068518 | 28068280 | ID=Msa0496640-mRNA-1:three_prime_utr;Parent=Msa0496640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
