AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497000 MtrunA17_Chr3g0091481 98.750 160 2 0 1 160 1 160 3.38e-117 328
Msa0497000 MtrunA17_Chr4g0061171 96.250 160 6 0 1 160 1 160 1.23e-112 316
Msa0497000 MtrunA17_Chr5g0418211 92.453 159 12 0 1 159 1 159 1.51e-108 306
Msa0497000 MtrunA17_Chr4g0074021 92.453 159 12 0 1 159 1 159 3.11e-108 305
Msa0497000 MtrunA17_Chr4g0062241 71.569 102 19 1 1 102 1 92 4.30e-48 150
Msa0497000 MtrunA17_Chr4g0074011 46.875 128 20 2 18 145 42 121 4.09e-26 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497000 AT1G13950.1 92.453 159 11 1 1 159 1 158 6.97e-107 302
Msa0497000 AT1G69410.1 86.792 159 20 1 1 159 1 158 1.99e-100 285
Msa0497000 AT1G26630.1 80.892 157 29 1 1 157 1 156 4.83e-93 267
Msa0497000 AT1G26630.2 83.465 127 20 1 1 127 1 126 2.04e-76 224

Find 54 sgRNAs with CRISPR-Local

Find 545 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATACTATGCCTTATTTA+AGG 0.127873 3_4:-28956688 Msa0497000:five_prime_UTR
ATTATACTAGAGTTAGAATT+AGG 0.278418 3_4:-28948378 Msa0497000:three_prime_UTR
TGTGTTATTGTTCAACCCTT+TGG 0.346979 3_4:-28948627 Msa0497000:three_prime_UTR
GTGAGTCTGCTTACTGAAAA+TGG 0.350641 3_4:-28950339 Msa0497000:CDS
ATTGTTCAACCCTTTGGTTA+TGG 0.370124 3_4:-28948621 Msa0497000:three_prime_UTR
CTCTCGCATCAAATCAGGTT+TGG 0.374808 3_4:-28956557 Msa0497000:five_prime_UTR
TTGATCGATATTTCTGAAGA+TGG 0.379975 3_4:-28950469 Msa0497000:CDS
CTTGGCATGACCATGCTTAC+CGG 0.382469 3_4:+28950686 None:intergenic
ATTAATGCCCTGAAAGATAT+TGG 0.418980 3_4:-28948719 Msa0497000:CDS
ACCATGCTTACCGGTCTTTG+AGG 0.422545 3_4:+28950695 None:intergenic
TCTGTCTCTCGCATCAAATC+AGG 0.432268 3_4:-28956562 Msa0497000:five_prime_UTR
CATGCCAAGTGTCACTTTGT+TGG 0.465747 3_4:-28950672 Msa0497000:CDS
TCTTGTATGGCAGGTTGTTG+AGG 0.496646 3_4:-28950724 Msa0497000:intron
AACCCTTTGGTTATGGACAC+TGG 0.501817 3_4:-28948614 Msa0497000:three_prime_UTR
AATCAGGTTTGGAGACAAAT+CGG 0.503293 3_4:-28956546 Msa0497000:five_prime_UTR
TCAACGTACATCACAATTGT+GGG 0.508011 3_4:+28950602 None:intergenic
CGGATGGTTCCGGCTTGTTG+AGG 0.515178 3_4:+28956435 None:intergenic
ATCAACGTACATCACAATTG+TGG 0.520978 3_4:+28950601 None:intergenic
TGTGTCCGTGATGTCTGCTA+TGG 0.523316 3_4:-28948753 Msa0497000:CDS
AGGATAAGTCTTGGAAGCTC+CGG 0.527718 3_4:+28956455 None:intergenic
TTCTAGAGATATTCTGAGTG+TGG 0.529441 3_4:-28948449 Msa0497000:three_prime_UTR
TACATCACAATTGTGGGAAG+AGG 0.536885 3_4:+28950608 None:intergenic
GGCTTGTTGAGGATAAGTCT+TGG 0.549527 3_4:+28956446 None:intergenic
CGGTCACTGCAGATCAAGGA+AGG 0.550651 3_4:-28948800 Msa0497000:intron
ACTCATCATCATGTCGGACG+AGG 0.557318 3_4:-28956505 Msa0497000:exon
TTTGAGTCAAAAGCCGATGC+CGG 0.561371 3_4:-28956474 Msa0497000:CDS
AGGAAGCTTCAAGTCATCCT+TGG 0.562183 3_4:+28950311 None:intergenic
GTGTCCGTGATGTCTGCTAT+GGG 0.564696 3_4:-28948752 Msa0497000:CDS
AGTCTTGGAAGCTCCGGCAT+CGG 0.567163 3_4:+28956461 None:intergenic
GAGGTTTCAACCTCAAAGAC+CGG 0.568619 3_4:-28950705 Msa0497000:CDS
TTAATGTGCATGTGGGAACT+AGG 0.569231 3_4:-28948401 Msa0497000:three_prime_UTR
ACCTCAAAGACCGGTAAGCA+TGG 0.571121 3_4:-28950696 Msa0497000:CDS
GTCACATTCATAAACACAGT+TGG 0.571220 3_4:+28948577 None:intergenic
CTGAGTAAGCAGATTGTCAT+CGG 0.573674 3_4:+28950287 None:intergenic
CGATGACAATCTGCTTACTC+AGG 0.577063 3_4:-28950286 Msa0497000:intron
GACCAGTGTCCATAACCAAA+GGG 0.590821 3_4:+28948612 None:intergenic
CGTGATGTCTGCTATGGGTG+AGG 0.597852 3_4:-28948747 Msa0497000:CDS
ACATCACAATTGTGGGAAGA+GGG 0.598510 3_4:+28950609 None:intergenic
CAGACATCACGGACACAACA+AGG 0.601971 3_4:+28948759 None:intergenic
TATTTGAATTAATGTGCATG+TGG 0.603130 3_4:-28948409 Msa0497000:three_prime_UTR
TGATTTGATGCGAGAGACAG+AGG 0.608246 3_4:+28956564 None:intergenic
TGACCAGTGTCCATAACCAA+AGG 0.609807 3_4:+28948611 None:intergenic
ATTTGAATTAATGTGCATGT+GGG 0.617655 3_4:-28948408 Msa0497000:three_prime_UTR
AATATCGATCAATTGATAGT+CGG 0.622059 3_4:+28950480 None:intergenic
AAGACTTATCCTCAACAAGC+CGG 0.629507 3_4:-28956444 Msa0497000:CDS
GATAGTCGGTACGATTCACA+TGG 0.640579 3_4:+28950494 None:intergenic
GATTCCAACAAAGTGACACT+TGG 0.646223 3_4:+28950668 None:intergenic
CTCACCCATAGCAGACATCA+CGG 0.658249 3_4:+28948748 None:intergenic
GTAAGCAGATTGTCATCGGT+AGG 0.661464 3_4:+28950291 None:intergenic
ACCGTCACTCATCATCATGT+CGG 0.666310 3_4:-28956511 Msa0497000:exon
TACTGAAAATGGTAACACCA+AGG 0.675504 3_4:-28950328 Msa0497000:CDS
TCCGACATGATGATGAGTGA+CGG 0.676636 3_4:+28956510 None:intergenic
ATAGTCGGTACGATTCACAT+GGG 0.694380 3_4:+28950495 None:intergenic
TAGTCGGTACGATTCACATG+GGG 0.757208 3_4:+28950496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTACGTTTTATTTTATTT+TGG + chr3_4:28950253-28950272 None:intergenic 10.0%
!!! TAAAAATAAAGATTTTCTAT+TGG + chr3_4:28951046-28951065 None:intergenic 10.0%
!!! AATAGAAAATCTTTATTTTT+AGG - chr3_4:28951045-28951064 Msa0497000:intron 10.0%
!!! TTGAATATACTTTTAAATAA+TGG + chr3_4:28951717-28951736 Msa0497010:CDS 10.0%
!!! TTTCTTTTTAATTTAGTTTT+AGG - chr3_4:28953945-28953964 Msa0497000:intron 10.0%
!!! TTCTTTTTAATTTAGTTTTA+GGG - chr3_4:28953946-28953965 Msa0497000:intron 10.0%
!!! TTGTTAAATTATTTTTGTTT+TGG - chr3_4:28956489-28956508 Msa0497000:CDS 10.0%
!!! TATTGTTTTTTCCTTAAATA+AGG + chr3_4:28948305-28948324 None:intergenic 15.0%
!!! TGATCTTTTATTTTGTTTTT+TGG - chr3_4:28948666-28948685 Msa0497000:three_prime_UTR 15.0%
!! AAACCTATTAAAATTAAGTA+AGG + chr3_4:28949526-28949545 None:intergenic 15.0%
!!! AGAAGTAATTTTATTTTGTA+GGG + chr3_4:28949555-28949574 None:intergenic 15.0%
!!! TAGAAGTAATTTTATTTTGT+AGG + chr3_4:28949556-28949575 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr3_4:28949614-28949633 None:intergenic 15.0%
!!! TATTACGTTTTATTTTATGT+TGG + chr3_4:28953743-28953762 Msa0497010:CDS 15.0%
!! ATTCTATTATTTATAACCTT+TGG - chr3_4:28954070-28954089 Msa0497000:intron 15.0%
!! GTCATAAAAATAAAACAAAA+AGG + chr3_4:28954434-28954453 Msa0497010:CDS 15.0%
!!! ATATTGTTTCTTTCAATTTT+TGG - chr3_4:28954547-28954566 Msa0497000:intron 15.0%
!! TTGTAAGTTAAAATTAACTA+TGG + chr3_4:28955269-28955288 None:intergenic 15.0%
!!! TTTTATTTTGTTTTTTGGTC+AGG - chr3_4:28948671-28948690 Msa0497000:three_prime_UTR 20.0%
!!! TTTATTTTGTTTTTTGGTCA+GGG - chr3_4:28948672-28948691 Msa0497000:three_prime_UTR 20.0%
!! ATCAAATACAAACAAAATCA+TGG + chr3_4:28948739-28948758 None:intergenic 20.0%
!!! ATGATTTTGTTTGTATTTGA+TGG - chr3_4:28948738-28948757 Msa0497000:CDS 20.0%
!! TATTATATAGTTGTTTGAGA+AGG - chr3_4:28949049-28949068 Msa0497000:intron 20.0%
!!! ATTGTTTTAGTGTTTGTTAA+AGG - chr3_4:28949320-28949339 Msa0497000:intron 20.0%
!!! TAGAAGTTACCAATTTTATA+AGG + chr3_4:28949495-28949514 None:intergenic 20.0%
!!! AGTCCTTACTTAATTTTAAT+AGG - chr3_4:28949520-28949539 Msa0497000:intron 20.0%
!! AGAGCTATTAAAATTAAGTA+AGG - chr3_4:28949919-28949938 Msa0497000:intron 20.0%
!!! TTTTTTGTCCCTATAAAATT+GGG + chr3_4:28949961-28949980 None:intergenic 20.0%
!!! AAACTTGTTATTTTCTATCT+AGG + chr3_4:28950055-28950074 None:intergenic 20.0%
!! AAACATAAAACCAATTGAAT+TGG - chr3_4:28950552-28950571 Msa0497000:intron 20.0%
!! TTGTTAATTGAAAAGATGAT+TGG - chr3_4:28950631-28950650 Msa0497000:CDS 20.0%
!! AGATTTAATACAAGGATAAA+TGG - chr3_4:28951123-28951142 Msa0497000:intron 20.0%
!! CTATCTAAAAGATAATTCTA+AGG + chr3_4:28951271-28951290 None:intergenic 20.0%
!! CAAACTAAAGAATATTTCAT+GGG + chr3_4:28951478-28951497 None:intergenic 20.0%
!! TCAAACTAAAGAATATTTCA+TGG + chr3_4:28951479-28951498 None:intergenic 20.0%
!!! TATACTTTTAAATAATGGTG+TGG + chr3_4:28951712-28951731 Msa0497010:CDS 20.0%
!! TTCAGTTAAATCTATTGAAA+AGG + chr3_4:28953130-28953149 Msa0497010:CDS 20.0%
!! TTCAATAGATTTAACTGAAT+TGG - chr3_4:28953131-28953150 Msa0497000:intron 20.0%
!! TAGAAACAATCAAATTATTG+AGG + chr3_4:28953244-28953263 Msa0497010:CDS 20.0%
!!! AAACTTGTTATTTTCTATCT+AGG + chr3_4:28950055-28950074 None:intergenic 20.0%
!!! AATTTGTTTGATTCAATGAT+CGG - chr3_4:28954571-28954590 Msa0497000:intron 20.0%
!!! ATTGAATGATGTTATTTTGT+AGG - chr3_4:28954618-28954637 Msa0497000:intron 20.0%
!!! TTAGCTTTAGAACATTTTTT+TGG - chr3_4:28954768-28954787 Msa0497000:intron 20.0%
!!! CATAAACTAAAATCCATTTT+AGG + chr3_4:28954943-28954962 None:intergenic 20.0%
!! TTAAAATATCAAGATGTAGA+AGG - chr3_4:28955222-28955241 Msa0497000:intron 20.0%
!! TAAATTAATGCCATAAGAAA+AGG + chr3_4:28955309-28955328 None:intergenic 20.0%
!!! CTCTAATTGAGATTTTTTAT+CGG - chr3_4:28956159-28956178 Msa0497000:intron 20.0%
!!! ATATCTTTTGCTTAAATAGA+AGG + chr3_4:28956324-28956343 None:intergenic 20.0%
!! ATTATACTAGAGTTAGAATT+AGG - chr3_4:28956601-28956620 Msa0497000:five_prime_UTR 20.0%
!!! CTTATCTTTTTTGTTTTTCG+AGG + chr3_4:28948330-28948349 None:intergenic 25.0%
!!! TGTTGTTTTGTTCTGTTTTT+TGG - chr3_4:28948844-28948863 Msa0497000:intron 25.0%
!!! TTTGACAAGGTTTTAAATTG+AGG - chr3_4:28948904-28948923 Msa0497000:intron 25.0%
! TTAAACAGAACAAAACAACA+AGG + chr3_4:28949001-28949020 None:intergenic 25.0%
! TCAACAACATCAATTAATCA+AGG + chr3_4:28949418-28949437 None:intergenic 25.0%
!! CATCAAAAACCTTAATTTTG+TGG - chr3_4:28949447-28949466 Msa0497000:intron 25.0%
!! AAAAACCTTAATTTTGTGGT+TGG - chr3_4:28949451-28949470 Msa0497000:intron 25.0%
!! AAAACCTTAATTTTGTGGTT+GGG - chr3_4:28949452-28949471 Msa0497000:intron 25.0%
!!! GTTTTTGGTCCTTATAAAAT+TGG - chr3_4:28949483-28949502 Msa0497000:intron 25.0%
!! AAACAAACTTTGTTGTAACA+GGG + chr3_4:28949585-28949604 None:intergenic 25.0%
!! TAAACAAACTTTGTTGTAAC+AGG + chr3_4:28949586-28949605 None:intergenic 25.0%
! CGTATTAAGAACATTACTAA+AGG + chr3_4:28949807-28949826 None:intergenic 25.0%
! AAGTAAGGACTAAACTTAAA+AGG - chr3_4:28949934-28949953 Msa0497000:intron 25.0%
!! TTAAAAGGTCCCAATTTTAT+AGG - chr3_4:28949949-28949968 Msa0497000:intron 25.0%
!! TAAAAGGTCCCAATTTTATA+GGG - chr3_4:28949950-28949969 Msa0497000:intron 25.0%
!!! GTTTTTTGTCCCTATAAAAT+TGG + chr3_4:28949962-28949981 None:intergenic 25.0%
! AAAACATATTTAACCCTTTG+TGG - chr3_4:28949977-28949996 Msa0497000:intron 25.0%
! ATCACTATATAAACCACAAA+GGG + chr3_4:28949993-28950012 None:intergenic 25.0%
! AATCACTATATAAACCACAA+AGG + chr3_4:28949994-28950013 None:intergenic 25.0%
!!! TTTTATTTTATTTTGGCCCA+CGG + chr3_4:28950246-28950265 None:intergenic 25.0%
! TTTGTGATACAACATATTGA+AGG - chr3_4:28950662-28950681 Msa0497000:CDS 25.0%
!! TAGTTACTTTATCAACACAA+GGG + chr3_4:28950806-28950825 None:intergenic 25.0%
!!! TTTTCTATTGGCTAAGTTTT+TGG + chr3_4:28951034-28951053 None:intergenic 25.0%
! TATCCTTGTATTAAATCTAC+AGG + chr3_4:28951121-28951140 None:intergenic 25.0%
!!! AAAGATAATTCTAAGGTAGT+TGG + chr3_4:28951264-28951283 None:intergenic 25.0%
!! GATGAATTTTATGATGCTAT+TGG + chr3_4:28951570-28951589 Msa0497010:CDS 25.0%
! TATTACATTGTTACACATGA+TGG - chr3_4:28951740-28951759 Msa0497000:intron 25.0%
! AAAAAGAAGATGAATTTGTG+AGG - chr3_4:28952836-28952855 Msa0497000:intron 25.0%
! AAAAGAAGATGAATTTGTGA+GGG - chr3_4:28952837-28952856 Msa0497000:intron 25.0%
!! ATTTAGAATCATTGTAGCTT+TGG - chr3_4:28953859-28953878 Msa0497000:intron 25.0%
!! GAATAGTAATTTTGGACTTA+TGG - chr3_4:28953911-28953930 Msa0497000:intron 25.0%
!! AATTGTGACATTAGGATTTT+TGG + chr3_4:28954036-28954055 Msa0497010:CDS 25.0%
! CTATTATTTATAACCTTTGG+AGG - chr3_4:28954073-28954092 Msa0497000:intron 25.0%
!! ATGGATTTTCGTAGTTATTT+TGG - chr3_4:28954115-28954134 Msa0497000:intron 25.0%
!! AATATCGATCAATTGATAGT+CGG + chr3_4:28954502-28954521 Msa0497010:CDS 25.0%
!! TTTTACAAAACTTCAATGAG+AGG + chr3_4:28955019-28955038 None:intergenic 25.0%
! ACTTGAAAACTAGAAATAAG+TGG - chr3_4:28955082-28955101 Msa0497000:intron 25.0%
! ATTAACTATGGCAAAAGAAA+AGG + chr3_4:28955257-28955276 None:intergenic 25.0%
!! TGTAGTTTAACCTTTTCTTA+TGG - chr3_4:28955296-28955315 Msa0497000:intron 25.0%
! TAAAATTAACTTTACGCCAT+AGG + chr3_4:28955559-28955578 None:intergenic 25.0%
!!! CTTTATCTGAGATGTTTTAT+CGG - chr3_4:28955778-28955797 Msa0497000:intron 25.0%
!!! TTTATCTGAGATGTTTTATC+GGG - chr3_4:28955779-28955798 Msa0497000:intron 25.0%
! CAATAAAACATCTTAGTTAG+TGG + chr3_4:28955877-28955896 None:intergenic 25.0%
!! CTTTAACTGAGACTTTTTAT+CGG - chr3_4:28956062-28956081 Msa0497000:intron 25.0%
! CGATAAAAAATCTCAATTAG+AGG + chr3_4:28956161-28956180 None:intergenic 25.0%
!!! AATAGTTGAAGCTAGTTTTT+TGG + chr3_4:28956287-28956306 None:intergenic 25.0%
! TATTTGAATTAATGTGCATG+TGG - chr3_4:28956570-28956589 Msa0497000:five_prime_UTR 25.0%
! ATTTGAATTAATGTGCATGT+GGG - chr3_4:28956571-28956590 Msa0497000:five_prime_UTR 25.0%
!! TAACGATGTAACCATTTTTG+CGG + chr3_4:28948567-28948586 None:intergenic 30.0%
AAAAAGATGAAAACCTTGCA+GGG + chr3_4:28948601-28948620 None:intergenic 30.0%
AAAAAAGATGAAAACCTTGC+AGG + chr3_4:28948602-28948621 None:intergenic 30.0%
AGGGTTTGATTGTTAATTAC+AGG - chr3_4:28948691-28948710 Msa0497000:exon 30.0%
GGGTTTGATTGTTAATTACA+GGG - chr3_4:28948692-28948711 Msa0497000:exon 30.0%
!! TATTGTAGTGTTGTTTGACA+AGG - chr3_4:28948891-28948910 Msa0497000:intron 30.0%
AACATAAGGAACACTCTAAA+GGG + chr3_4:28949256-28949275 None:intergenic 30.0%
AGACAGAACAAAACAACATA+AGG + chr3_4:28949270-28949289 None:intergenic 30.0%
!!! ATGTTGTTTTGTTCTGTCTT+AGG - chr3_4:28949271-28949290 Msa0497000:intron 30.0%
!!! TGTTGTTTTGTTCTGTCTTA+GGG - chr3_4:28949272-28949291 Msa0497000:intron 30.0%
TTAACCCAACCACAAAATTA+AGG + chr3_4:28949459-28949478 None:intergenic 30.0%
! GGTTGGGTTAAATATGTTTT+TGG - chr3_4:28949468-28949487 Msa0497000:intron 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr3_4:28949646-28949665 Msa0497000:intron 30.0%
! TGAGTGCAGAAATTCTTTTA+AGG - chr3_4:28949889-28949908 Msa0497000:intron 30.0%
! GAGTGCAGAAATTCTTTTAA+GGG - chr3_4:28949890-28949909 Msa0497000:intron 30.0%
CGACAAACCTATCAAAATAA+GGG - chr3_4:28950109-28950128 Msa0497000:intron 30.0%
!!! TTTATTTTATTTTGGCCCAC+GGG + chr3_4:28950245-28950264 None:intergenic 30.0%
TCTTTATCAGAATGAGAACT+CGG + chr3_4:28950386-28950405 None:intergenic 30.0%
TTATTGTAATCATCACTCAG+AGG + chr3_4:28950581-28950600 None:intergenic 30.0%
!! ACAAAAGCACTCAATTGAAA+AGG + chr3_4:28950615-28950634 None:intergenic 30.0%
! CTAGTTACTTTATCAACACA+AGG + chr3_4:28950807-28950826 None:intergenic 30.0%
TAAAGTAACTAGCATTTGAG+AGG - chr3_4:28950815-28950834 Msa0497000:intron 30.0%
CTAATTCCAAGTATAGTTGA+GGG + chr3_4:28950976-28950995 None:intergenic 30.0%
ACTAATTCCAAGTATAGTTG+AGG + chr3_4:28950977-28950996 None:intergenic 30.0%
TATAGAACCAAACTGTAGTT+TGG - chr3_4:28951084-28951103 Msa0497000:intron 30.0%
GAACCTGTAGATTTAATACA+AGG - chr3_4:28951115-28951134 Msa0497000:intron 30.0%
! GTGAACGATTTAAGATTAGA+GGG + chr3_4:28951299-28951318 None:intergenic 30.0%
ATTGATGCAAGTGACTTTAA+TGG + chr3_4:28951375-28951394 None:intergenic 30.0%
TCACTTGCATCAATTTCTAT+AGG - chr3_4:28951381-28951400 Msa0497000:intron 30.0%
ATTTCTATAGGACTTACATG+AGG - chr3_4:28951393-28951412 Msa0497000:intron 30.0%
CCAAATCTATGCAAAGAATT+AGG + chr3_4:28951420-28951439 None:intergenic 30.0%
CCTAATTCTTTGCATAGATT+TGG - chr3_4:28951417-28951436 Msa0497000:intron 30.0%
TACTGAAGAAACCAATTTAC+TGG + chr3_4:28951667-28951686 Msa0497010:CDS 30.0%
CTTTCAATGTGGAAACTATT+AGG - chr3_4:28951780-28951799 Msa0497000:intron 30.0%
!! ATGAAGTATTTTGAATCCAC+TGG + chr3_4:28951840-28951859 Msa0497010:CDS 30.0%
CTAGATATCAAGGTCAAATT+AGG + chr3_4:28951948-28951967 Msa0497010:CDS 30.0%
CTTGTAAGAGACATGAATAA+TGG - chr3_4:28952296-28952315 Msa0497000:intron 30.0%
TAAGAGACATGAATAATGGT+TGG - chr3_4:28952300-28952319 Msa0497000:intron 30.0%
! AATTTGTTTATCCAACAGTG+TGG - chr3_4:28952708-28952727 Msa0497000:intron 30.0%
ATTTGTTTATCCAACAGTGT+GGG - chr3_4:28952709-28952728 Msa0497000:intron 30.0%
TTCAATTTCGGAAATCAACA+TGG + chr3_4:28952746-28952765 Msa0497010:intron 30.0%
ACAAAACATCAAAGGATTGA+AGG - chr3_4:28952813-28952832 Msa0497000:intron 30.0%
! AAGCGATGAAATTAGTTCTT+TGG - chr3_4:28952891-28952910 Msa0497000:intron 30.0%
! AGCGATGAAATTAGTTCTTT+GGG - chr3_4:28952892-28952911 Msa0497000:intron 30.0%
TACGATCAGTGATTTACAAA+TGG - chr3_4:28952948-28952967 Msa0497000:intron 30.0%
ACGATCAGTGATTTACAAAT+GGG - chr3_4:28952949-28952968 Msa0497000:intron 30.0%
GAAAAACACAAAGAAGTTCA+AGG + chr3_4:28953000-28953019 Msa0497010:CDS 30.0%
!! TCTTTGTGTTTTTCAACTTG+TGG - chr3_4:28953006-28953025 Msa0497000:intron 30.0%
!! AAAGGATCAGAAAGCATTAA+AGG + chr3_4:28953112-28953131 Msa0497010:CDS 30.0%
!! TGAGGATTCGAATTTTTCAA+TGG + chr3_4:28953226-28953245 Msa0497010:CDS 30.0%
AGAATTTGACGGTTTACATA+TGG + chr3_4:28953409-28953428 Msa0497010:CDS 30.0%
CGACAAACCTATCAAAATAA+GGG - chr3_4:28950109-28950128 Msa0497000:intron 30.0%
!!! TTTTATTTTATGTTGGCCCA+CGG + chr3_4:28953736-28953755 Msa0497010:CDS 30.0%
!! TGGTCTTGGAATAGTAATTT+TGG - chr3_4:28953903-28953922 Msa0497000:intron 30.0%
ACAGTACAAATTGTGACATT+AGG + chr3_4:28954044-28954063 Msa0497010:CDS 30.0%
TAATGTCACAATTTGTACTG+TGG - chr3_4:28954043-28954062 Msa0497000:intron 30.0%
! TTGATCGATATTTCTGAAGA+TGG - chr3_4:28954510-28954529 Msa0497000:intron 30.0%
CCAACGAATAAAACAATCAA+GGG + chr3_4:28954881-28954900 None:intergenic 30.0%
!!! TTTTATTCGTTGGCTCAAAT+TGG - chr3_4:28954888-28954907 Msa0497000:intron 30.0%
!! TGGTTCAACTTTTAGCTAAT+AGG - chr3_4:28954908-28954927 Msa0497000:intron 30.0%
GATGAAGTTCATAACATGTT+TGG - chr3_4:28954977-28954996 Msa0497000:intron 30.0%
CAGAATGTTCTCAAATCATA+CGG - chr3_4:28955180-28955199 Msa0497000:intron 30.0%
TTCAATACTCATTCTCTTAC+TGG - chr3_4:28955390-28955409 Msa0497000:intron 30.0%
TCTAATTGTGGCTTAAATCA+TGG + chr3_4:28955476-28955495 None:intergenic 30.0%
CAATAAAACATCTCAGTTTG+AGG + chr3_4:28955750-28955769 None:intergenic 30.0%
CGATAAAACATCTCAGATAA+AGG + chr3_4:28955780-28955799 None:intergenic 30.0%
CAATAAAACATCTCAGTTAG+AGG + chr3_4:28955907-28955926 None:intergenic 30.0%
AATACAAAGACTCAATGAAC+AGG + chr3_4:28956008-28956027 None:intergenic 30.0%
CAATAAAACATCTCAGTTAG+TGG + chr3_4:28955907-28955926 None:intergenic 30.0%
CGATAAAAAGTCTCAGTTAA+AGG + chr3_4:28956064-28956083 None:intergenic 30.0%
ATTAATGCCCTGAAAGATAT+TGG - chr3_4:28956260-28956279 Msa0497000:intron 30.0%
! TTTTGGACCAATATCTTTCA+GGG + chr3_4:28956270-28956289 None:intergenic 30.0%
! TTTTTGGACCAATATCTTTC+AGG + chr3_4:28956271-28956290 None:intergenic 30.0%
AATCAGGTTTGGAGACAAAT+CGG - chr3_4:28948433-28948452 Msa0497000:three_prime_UTR 35.0%
TTGTGATCCCTTGATATTGT+AGG - chr3_4:28948932-28948951 Msa0497000:intron 35.0%
TGTGATCCCTTGATATTGTA+GGG - chr3_4:28948933-28948952 Msa0497000:intron 35.0%
!! TTAGTAGAACCCTTTTAGAG+TGG - chr3_4:28948974-28948993 Msa0497000:intron 35.0%
TTTGAGAAGGTCTTAAAACG+TGG - chr3_4:28949062-28949081 Msa0497000:intron 35.0%
! ACAAGAGGAACACTCTAAAA+GGG + chr3_4:28949144-28949163 None:intergenic 35.0%
TGTTCCTCTTGTGTAAAACA+GGG - chr3_4:28949152-28949171 Msa0497000:intron 35.0%
CAACATAAGGAACACTCTAA+AGG + chr3_4:28949257-28949276 None:intergenic 35.0%
! TTTGCAACAATTTTTCGCTG+TGG - chr3_4:28949779-28949798 Msa0497000:intron 35.0%
! GAGTTTAAGCATTTGAAGTG+AGG - chr3_4:28949854-28949873 Msa0497000:intron 35.0%
! TTTAAGCATTTGAAGTGAGG+AGG - chr3_4:28949857-28949876 Msa0497000:intron 35.0%
! TTAAGCATTTGAAGTGAGGA+GGG - chr3_4:28949858-28949877 Msa0497000:intron 35.0%
TATAGTGATTTGACGCAGTA+CGG - chr3_4:28950004-28950023 Msa0497000:intron 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr3_4:28950078-28950097 Msa0497000:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr3_4:28950079-28950098 Msa0497000:intron 35.0%
GCGACAAACCTATCAAAATA+AGG - chr3_4:28950108-28950127 Msa0497000:intron 35.0%
ACCTATCAAAATAAGGGTTC+CGG - chr3_4:28950115-28950134 Msa0497000:intron 35.0%
!! GATTTTCTCTCAATTTCTGG+TGG + chr3_4:28950144-28950163 None:intergenic 35.0%
! CGAGATTTTCTCTCAATTTC+TGG + chr3_4:28950147-28950166 None:intergenic 35.0%
! AATGAAAAAGTGTGCCTCTT+GGG - chr3_4:28950180-28950199 Msa0497000:intron 35.0%
TGAAAGAAATAACAAACCCG+TGG - chr3_4:28950226-28950245 Msa0497000:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG - chr3_4:28950227-28950246 Msa0497000:intron 35.0%
TTTATCAGAATGAGAACTCG+GGG + chr3_4:28950384-28950403 None:intergenic 35.0%
CTTTATCAGAATGAGAACTC+GGG + chr3_4:28950385-28950404 None:intergenic 35.0%
! AGCTACTACCTTTTTCCAAT+GGG + chr3_4:28950461-28950480 None:intergenic 35.0%
! AAGCTACTACCTTTTTCCAA+TGG + chr3_4:28950462-28950481 None:intergenic 35.0%
TCAGAGGTTTCCAATTCAAT+TGG + chr3_4:28950565-28950584 None:intergenic 35.0%
AGTCTTGAAGTGCATAATCT+AGG - chr3_4:28950706-28950725 Msa0497000:CDS 35.0%
ATTATCTCAAGATGTTCAGC+TGG + chr3_4:28950910-28950929 None:intergenic 35.0%
TATAGTTGAGGGATATTGGA+TGG + chr3_4:28950965-28950984 None:intergenic 35.0%
CAAGTATAGTTGAGGGATAT+TGG + chr3_4:28950969-28950988 None:intergenic 35.0%
CAATATCCCTCAACTATACT+TGG - chr3_4:28950967-28950986 Msa0497000:intron 35.0%
!! CTATTGGCTAAGTTTTTGGA+TGG + chr3_4:28951030-28951049 None:intergenic 35.0%
AGCTAAACCAAACTACAGTT+TGG + chr3_4:28951094-28951113 None:intergenic 35.0%
! AAACTGTAGTTTGGTTTAGC+TGG - chr3_4:28951093-28951112 Msa0497000:intron 35.0%
TTCAGAGCGAAGTTTGTAAA+AGG + chr3_4:28951152-28951171 None:intergenic 35.0%
!! GATAATTCTAAGGTAGTTGG+AGG + chr3_4:28951261-28951280 None:intergenic 35.0%
! GGTGAACGATTTAAGATTAG+AGG + chr3_4:28951300-28951319 None:intergenic 35.0%
ATCTTAAATCGTTCACCACT+AGG - chr3_4:28951303-28951322 Msa0497000:intron 35.0%
ATCAGATGACGAAATTGATG+AGG + chr3_4:28951532-28951551 None:intergenic 35.0%
! ATATGAAAATGCAGAAGTGC+AGG + chr3_4:28951592-28951611 Msa0497010:CDS 35.0%
!! ATTCTTCGGTGTTTGGTTAA+TGG + chr3_4:28951621-28951640 Msa0497010:CDS 35.0%
TTGGATCATGCAACATTCTT+CGG + chr3_4:28951635-28951654 Msa0497010:CDS 35.0%
TGGTGTAAGACTAGATATCA+AGG + chr3_4:28951958-28951977 Msa0497010:CDS 35.0%
TGGATGTTAATGCAATGGAT+AGG + chr3_4:28952091-28952110 Msa0497010:CDS 35.0%
TGAAGTGGATGTTAATGCAA+TGG + chr3_4:28952096-28952115 Msa0497010:CDS 35.0%
GTCACAAGTGTTTCTTTCAA+TGG - chr3_4:28952139-28952158 Msa0497000:intron 35.0%
TTTCTTTCAATGGTGAGTGT+TGG - chr3_4:28952149-28952168 Msa0497000:intron 35.0%
ATCAGGTGATTAGATGAGAA+TGG - chr3_4:28952463-28952482 Msa0497000:intron 35.0%
TATGACGAGAATGCTTTAGT+TGG - chr3_4:28952685-28952704 Msa0497000:intron 35.0%
CATCGATGCAGATTCAATTT+CGG + chr3_4:28952758-28952777 Msa0497010:intron 35.0%
TTGTCGTCACAAAACATCAA+AGG - chr3_4:28952805-28952824 Msa0497000:intron 35.0%
! GATTTAGAACGTGGATTCAA+AGG - chr3_4:28952865-28952884 Msa0497000:intron 35.0%
! GCGATGAAATTAGTTCTTTG+GGG - chr3_4:28952893-28952912 Msa0497000:intron 35.0%
AACATCCATAATCACAAACC+AGG + chr3_4:28952923-28952942 Msa0497010:CDS 35.0%
AAAGAAGTTCAAGGAATTCC+GGG + chr3_4:28952991-28953010 Msa0497010:CDS 35.0%
CAAAGAAGTTCAAGGAATTC+CGG + chr3_4:28952992-28953011 Msa0497010:CDS 35.0%
ATTAAAGGCTATACTTGACG+AGG + chr3_4:28953097-28953116 Msa0497010:CDS 35.0%
AAGAGATAATGTCGAATCAC+TGG + chr3_4:28953185-28953204 Msa0497010:CDS 35.0%
!! GGATTCGAATTTTTCAATGG+TGG + chr3_4:28953223-28953242 Msa0497010:CDS 35.0%
GATCACGTTAGAAAAAGAAC+AGG - chr3_4:28953459-28953478 Msa0497000:intron 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr3_4:28950078-28950097 Msa0497000:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr3_4:28950079-28950098 Msa0497000:intron 35.0%
GCGACAAACCTATCAAAATA+AGG - chr3_4:28950108-28950127 Msa0497000:intron 35.0%
ACCTATCAAAATAAGGGTTC+CGG - chr3_4:28950115-28950134 Msa0497000:intron 35.0%
!! GATTTTCTCTCAATTTCTGG+TGG + chr3_4:28950144-28950163 None:intergenic 35.0%
! CGAGATTTTCTCTCAATTTC+TGG + chr3_4:28950147-28950166 None:intergenic 35.0%
! AATGAAAAAGTGTGCCTCTT+GGG - chr3_4:28950180-28950199 Msa0497000:intron 35.0%
TGAAAGAAATAACAAACCCG+TGG - chr3_4:28950226-28950245 Msa0497000:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG - chr3_4:28950227-28950246 Msa0497000:intron 35.0%
!!! TTTATTTTATGTTGGCCCAC+GGG + chr3_4:28953735-28953754 Msa0497010:CDS 35.0%
AAAACTCTCAATCATGATGC+AGG + chr3_4:28953839-28953858 Msa0497010:CDS 35.0%
!! TAGCTTTGGTAGTGTTTGAA+AGG - chr3_4:28953873-28953892 Msa0497000:intron 35.0%
AGTGTTTGAAAGGATTTGTG+TGG - chr3_4:28953883-28953902 Msa0497000:intron 35.0%
! TGTTGTATTGTGCTGTTGTA+TGG - chr3_4:28953988-28954007 Msa0497000:intron 35.0%
! ATAACCTTTGGAGGTAACTT+TGG - chr3_4:28954082-28954101 Msa0497000:intron 35.0%
TAACTTTGGTTGTGTTGGAA+TGG - chr3_4:28954096-28954115 Msa0497000:intron 35.0%
!!! GTGCTTGTTTTGAACTTTGA+TGG - chr3_4:28954196-28954215 Msa0497000:intron 35.0%
GATTCTGTGATTGATGTGTT+TGG - chr3_4:28954226-28954245 Msa0497000:intron 35.0%
! TGTTTGGATGGATTCTTGTA+TGG - chr3_4:28954242-28954261 Msa0497000:intron 35.0%
! CACAATATCTTCGAGCTTTT+TGG + chr3_4:28954350-28954369 Msa0497010:CDS 35.0%
TCAACGTACATCACAATTGT+GGG + chr3_4:28954380-28954399 Msa0497010:CDS 35.0%
ATCAACGTACATCACAATTG+TGG + chr3_4:28954381-28954400 Msa0497010:CDS 35.0%
ATTGTGATGTACGTTGATGT+TGG - chr3_4:28954383-28954402 Msa0497000:intron 35.0%
!!! TTCTGTGTTTTTTGTCTCCT+AGG - chr3_4:28954458-28954477 Msa0497000:intron 35.0%
TACTGAAAATGGTAACACCA+AGG - chr3_4:28954651-28954670 Msa0497000:intron 35.0%
! GGAATCTACTGCTTTGTTAA+TGG - chr3_4:28954722-28954741 Msa0497000:intron 35.0%
! AAAGCTAAGCATACTTTTGC+AGG + chr3_4:28954756-28954775 None:intergenic 35.0%
TCTGATGGAAAACAAGATTC+AGG + chr3_4:28954845-28954864 None:intergenic 35.0%
GGAATCAATGATGATTCTGA+TGG + chr3_4:28954860-28954879 None:intergenic 35.0%
!! CCCTTGATTGTTTTATTCGT+TGG - chr3_4:28954878-28954897 Msa0497000:intron 35.0%
GCCAACGAATAAAACAATCA+AGG + chr3_4:28954882-28954901 None:intergenic 35.0%
TAGGAGTTCTTAGCCTAAAA+TGG - chr3_4:28954927-28954946 Msa0497000:intron 35.0%
!! TTCATAACATGTTTGGTGTG+AGG - chr3_4:28954984-28955003 Msa0497000:intron 35.0%
!! TCATAACATGTTTGGTGTGA+GGG - chr3_4:28954985-28955004 Msa0497000:intron 35.0%
AAATCATACGGCCTTAAAAG+AGG - chr3_4:28955192-28955211 Msa0497000:intron 35.0%
AATCATACGGCCTTAAAAGA+GGG - chr3_4:28955193-28955212 Msa0497000:intron 35.0%
GAAATGAGTTCCACTTAAAG+TGG + chr3_4:28955437-28955456 None:intergenic 35.0%
CAACACTCACTTTCTAATTG+TGG + chr3_4:28955488-28955507 None:intergenic 35.0%
CACAATTAGAAAGTGAGTGT+TGG - chr3_4:28955486-28955505 Msa0497000:intron 35.0%
TAACTTTACGCCATAGGAAA+AGG + chr3_4:28955553-28955572 None:intergenic 35.0%
ATCTCAAACTCAGAACTTAG+AGG + chr3_4:28955813-28955832 None:intergenic 35.0%
!! GAGTTTGAGATGCTCTATTT+TGG - chr3_4:28955822-28955841 Msa0497000:intron 35.0%
CTATAAAACGTCTCAGTTAG+AGG + chr3_4:28955937-28955956 None:intergenic 35.0%
! CTCTAACTGAGACGTTTTAT+AGG - chr3_4:28955935-28955954 Msa0497000:intron 35.0%
!! GAGTTTGAGATGCTCTATTT+TGG - chr3_4:28955822-28955841 Msa0497000:intron 35.0%
ATCGGTGTATTGTTCCTATA+AGG - chr3_4:28956080-28956099 Msa0497000:intron 35.0%
ATCTCAAACTCAGACCTTAT+AGG + chr3_4:28956097-28956116 None:intergenic 35.0%
! TGTGTTATTGTTCAACCCTT+TGG - chr3_4:28956352-28956371 Msa0497000:intron 35.0%
ATTGTTCAACCCTTTGGTTA+TGG - chr3_4:28956358-28956377 Msa0497000:intron 35.0%
GTCACATTCATAAACACAGT+TGG + chr3_4:28956405-28956424 None:intergenic 35.0%
AAAAAAAACTTGGGACAGCA+TGG + chr3_4:28956454-28956473 None:intergenic 35.0%
! TTCTAGAGATATTCTGAGTG+TGG - chr3_4:28956530-28956549 Msa0497000:five_prime_UTR 35.0%
! TTGTAGCTTCAAGTGCTTTT+TGG - chr3_4:28956650-28956669 Msa0497000:five_prime_UTR 35.0%
AAGACTTATCCTCAACAAGC+CGG - chr3_4:28948535-28948554 Msa0497000:three_prime_UTR 40.0%
!! GATGTAACCATTTTTGCGGA+TGG + chr3_4:28948563-28948582 None:intergenic 40.0%
TATCAAAAATCGTCCCTGCA+AGG - chr3_4:28948585-28948604 Msa0497000:three_prime_UTR 40.0%
GTGATCCCTTGATATTGTAG+GGG - chr3_4:28948934-28948953 Msa0497000:intron 40.0%
! CAACAAGGACCACTCTAAAA+GGG + chr3_4:28948986-28949005 None:intergenic 40.0%
ACAACAAGGACCACTCTAAA+AGG + chr3_4:28948987-28949006 None:intergenic 40.0%
AGAAGGTCTTAAAACGTGGT+AGG - chr3_4:28949066-28949085 Msa0497000:intron 40.0%
CACAAGAGGAACACTCTAAA+AGG + chr3_4:28949145-28949164 None:intergenic 40.0%
GTGTTCCTCTTGTGTAAAAC+AGG - chr3_4:28949151-28949170 Msa0497000:intron 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr3_4:28949159-28949178 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr3_4:28949157-28949176 Msa0497000:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_4:28949183-28949202 Msa0497000:intron 40.0%
TCTGTCTTAGGGTTGTGTTT+AGG - chr3_4:28949283-28949302 Msa0497000:intron 40.0%
GTTGCGTCTGTTTGATATTG+TGG - chr3_4:28949359-28949378 Msa0497000:intron 40.0%
GAAAGAGTCTAAGTCGAATG+CGG - chr3_4:28949383-28949402 Msa0497000:intron 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG + chr3_4:28950119-28950138 None:intergenic 40.0%
!! TCTCAATTTCTGGTGGATTC+CGG + chr3_4:28950137-28950156 None:intergenic 40.0%
! GAATGAAAAAGTGTGCCTCT+TGG - chr3_4:28950179-28950198 Msa0497000:intron 40.0%
TTGAAGGAGTCAACATGCAT+GGG + chr3_4:28950413-28950432 None:intergenic 40.0%
ATTGAAGGAGTCAACATGCA+TGG + chr3_4:28950414-28950433 None:intergenic 40.0%
GATGGTCTCTTGTTCATTGA+AGG + chr3_4:28950429-28950448 None:intergenic 40.0%
TCCATCGTTTGCATCTCATT+TGG - chr3_4:28950499-28950518 Msa0497000:CDS 40.0%
TCCAAATGAGATGCAAACGA+TGG + chr3_4:28950503-28950522 None:intergenic 40.0%
GTTTAATGAGCATCACGTAC+AGG + chr3_4:28950536-28950555 None:intergenic 40.0%
! ACTCAGGTTGTTACAACACA+TGG + chr3_4:28950748-28950767 None:intergenic 40.0%
TCAAGCTCGTAGCAATTGAT+TGG + chr3_4:28951227-28951246 None:intergenic 40.0%
TTTAATGGCTCTCTACGCAA+CGG + chr3_4:28951360-28951379 None:intergenic 40.0%
!! ATGCAACATTCTTCGGTGTT+TGG + chr3_4:28951628-28951647 Msa0497010:CDS 40.0%
! CATTGTTACACATGATGGTG+TGG - chr3_4:28951745-28951764 Msa0497000:intron 40.0%
GCAAGAGAGTTCTTTCAATG+TGG - chr3_4:28951769-28951788 Msa0497000:intron 40.0%
CATATTGAGTATAGTGCCAG+TGG - chr3_4:28951821-28951840 Msa0497000:intron 40.0%
TTCATAGCACACCATGTGAT+TGG - chr3_4:28951855-28951874 Msa0497000:intron 40.0%
GAAGAATTTCGTGTAGGTGT+TGG + chr3_4:28951897-28951916 Msa0497010:CDS 40.0%
ACAGGAGAAGAATTTCGTGT+AGG + chr3_4:28951903-28951922 Msa0497010:CDS 40.0%
! CAAATTAGGAGCTTGGTCTT+GGG + chr3_4:28951934-28951953 Msa0497010:CDS 40.0%
TCAAATTAGGAGCTTGGTCT+TGG + chr3_4:28951935-28951954 Msa0497010:CDS 40.0%
TCAAGGTCAAATTAGGAGCT+TGG + chr3_4:28951941-28951960 Msa0497010:CDS 40.0%
GTAGTTAGACTACAGTTGCA+GGG + chr3_4:28951981-28952000 Msa0497010:CDS 40.0%
TGTAGTTAGACTACAGTTGC+AGG + chr3_4:28951982-28952001 Msa0497010:CDS 40.0%
! CAATGCATTATTTGCTGCTG+TGG + chr3_4:28952021-28952040 Msa0497010:CDS 40.0%
CATTGCAATGAACATTAGCG+TGG - chr3_4:28952036-28952055 Msa0497000:intron 40.0%
ATCCAAAGAATCTGATCCGT+AGG - chr3_4:28952249-28952268 Msa0497000:intron 40.0%
ATCCTACGGATCAGATTCTT+TGG + chr3_4:28952254-28952273 Msa0497010:CDS 40.0%
ATCTGATCCGTAGGATTGAA+CGG - chr3_4:28952258-28952277 Msa0497000:intron 40.0%
!! ATAATGGTTGGAAGTGCTGT+CGG - chr3_4:28952312-28952331 Msa0497000:intron 40.0%
GAAATTCGAATCAGCTTCCA+CGG - chr3_4:28952372-28952391 Msa0497000:intron 40.0%
! AAGTGTTGCTGCTGCAAATT+CGG + chr3_4:28952416-28952435 Msa0497010:CDS 40.0%
ACACTTCTATCAGGTGGTTT+CGG - chr3_4:28952430-28952449 Msa0497000:intron 40.0%
CAATCTGCAATGCTTAAGTG+AGG + chr3_4:28952500-28952519 Msa0497010:CDS 40.0%
! CTCACTTAAGCATTGCAGAT+TGG - chr3_4:28952498-28952517 Msa0497000:intron 40.0%
! ACTTAAGCATTGCAGATTGG+AGG - chr3_4:28952501-28952520 Msa0497000:intron 40.0%
! CTTAAGCATTGCAGATTGGA+GGG - chr3_4:28952502-28952521 Msa0497000:intron 40.0%
TCCCTCTCACATAACACAAT+CGG + chr3_4:28952631-28952650 Msa0497010:CDS 40.0%
TTGTGTTATGTGAGAGGGAT+TGG - chr3_4:28952632-28952651 Msa0497000:intron 40.0%
TCATACAATCTGCAACGCTT+TGG + chr3_4:28952670-28952689 Msa0497010:CDS 40.0%
CGAAATTGAATCTGCATCGA+TGG - chr3_4:28952756-28952775 Msa0497000:intron 40.0%
GAAGATGAATTTGTGAGGGA+AGG - chr3_4:28952841-28952860 Msa0497000:intron 40.0%
! GTTCTCCTGGTTTGTGATTA+TGG - chr3_4:28952915-28952934 Msa0497000:intron 40.0%
AACCAGAAGGTGAAAATCTC+CGG + chr3_4:28953065-28953084 Msa0497010:CDS 40.0%
TTTCTACCACGAACCCTAAT+TGG - chr3_4:28953258-28953277 Msa0497000:intron 40.0%
!! TGTTTTTGTCGTCGTAGTTG+CGG - chr3_4:28953301-28953320 Msa0497000:intron 40.0%
GTGGCATTAACAGCTAAGAT+CGG + chr3_4:28953360-28953379 Msa0497010:CDS 40.0%
CAAAGCTCTGTTAGATCAGA+TGG + chr3_4:28953382-28953401 Msa0497010:CDS 40.0%
CATCTGATCTAACAGAGCTT+TGG - chr3_4:28953380-28953399 Msa0497000:intron 40.0%
TTTCTAACGTGATCAGCCAT+GGG + chr3_4:28953453-28953472 Msa0497010:CDS 40.0%
! TTTTCTAACGTGATCAGCCA+TGG + chr3_4:28953454-28953473 Msa0497010:CDS 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG + chr3_4:28950119-28950138 None:intergenic 40.0%
!! TCTCAATTTCTGGTGGATTC+CGG + chr3_4:28950137-28950156 None:intergenic 40.0%
! GAATGAAAAAGTGTGCCTCT+TGG - chr3_4:28950179-28950198 Msa0497000:intron 40.0%
TGAAAGGATTTGTGTGGTCT+TGG - chr3_4:28953889-28953908 Msa0497000:intron 40.0%
! TATTGTGCTGTTGTATGGCT+AGG - chr3_4:28953993-28954012 Msa0497000:intron 40.0%
ACAACCAAAGTTACCTCCAA+AGG + chr3_4:28954089-28954108 Msa0497010:CDS 40.0%
CTGTGATTGATGTGTTTGGA+TGG - chr3_4:28954230-28954249 Msa0497000:intron 40.0%
GATTCCAACAAAGTGACACT+TGG + chr3_4:28954314-28954333 Msa0497010:CDS 40.0%
ACATCACAATTGTGGGAAGA+GGG + chr3_4:28954373-28954392 Msa0497010:CDS 40.0%
TACATCACAATTGTGGGAAG+AGG + chr3_4:28954374-28954393 Msa0497010:CDS 40.0%
ATAGTCGGTACGATTCACAT+GGG + chr3_4:28954487-28954506 Msa0497010:CDS 40.0%
GTGAGTCTGCTTACTGAAAA+TGG - chr3_4:28954640-28954659 Msa0497000:intron 40.0%
CTGAGTAAGCAGATTGTCAT+CGG + chr3_4:28954695-28954714 None:intergenic 40.0%
ATCTGCTTACTCAGGTTTGT+AGG - chr3_4:28954701-28954720 Msa0497000:intron 40.0%
ATCATACGGCCTTAAAAGAG+GGG - chr3_4:28955194-28955213 Msa0497000:intron 40.0%
! TTAAGACACCCCCTCTTTTA+AGG + chr3_4:28955206-28955225 None:intergenic 40.0%
GTGTCTCTAGCATTTCTCAA+AGG + chr3_4:28955352-28955371 None:intergenic 40.0%
TGAGTTCCACTTAAAGTGGT+GGG + chr3_4:28955433-28955452 None:intergenic 40.0%
ATGAGTTCCACTTAAAGTGG+TGG + chr3_4:28955434-28955453 None:intergenic 40.0%
! CTACCCTTAACCTTTTCCTA+TGG - chr3_4:28955540-28955559 Msa0497000:intron 40.0%
ACGCCATAGGAAAAGGTTAA+GGG + chr3_4:28955546-28955565 None:intergenic 40.0%
TACGCCATAGGAAAAGGTTA+AGG + chr3_4:28955547-28955566 None:intergenic 40.0%
ATCTCAAACTCAGAACTTGG+AGG + chr3_4:28955970-28955989 None:intergenic 40.0%
AGCATCTCAAACTCAGAACT+TGG + chr3_4:28955816-28955835 None:intergenic 40.0%
! ATCAAGGAAGGTTTTGCTGA+GGG - chr3_4:28956191-28956210 Msa0497000:intron 40.0%
TTAATGTGCATGTGGGAACT+AGG - chr3_4:28956578-28956597 Msa0497000:five_prime_UTR 40.0%
!!! AGAGGAGTGTGTTTTGAAGG+CGG + chr3_4:28948400-28948419 None:intergenic 45.0%
!! GACAGAGGAGTGTGTTTTGA+AGG + chr3_4:28948403-28948422 None:intergenic 45.0%
TGATTTGATGCGAGAGACAG+AGG + chr3_4:28948418-28948437 None:intergenic 45.0%
TCTGTCTCTCGCATCAAATC+AGG - chr3_4:28948417-28948436 Msa0497000:three_prime_UTR 45.0%
CTCTCGCATCAAATCAGGTT+TGG - chr3_4:28948422-28948441 Msa0497000:three_prime_UTR 45.0%
ACCGTCACTCATCATCATGT+CGG - chr3_4:28948468-28948487 Msa0497000:three_prime_UTR 45.0%
! TCCGACATGATGATGAGTGA+CGG + chr3_4:28948472-28948491 None:intergenic 45.0%
!!! CATCGGCTTTTGACTCAAAG+TGG + chr3_4:28948504-28948523 None:intergenic 45.0%
TTTGAGTCAAAAGCCGATGC+CGG - chr3_4:28948505-28948524 Msa0497000:three_prime_UTR 45.0%
AGGATAAGTCTTGGAAGCTC+CGG + chr3_4:28948527-28948546 None:intergenic 45.0%
!! GGCTTGTTGAGGATAAGTCT+TGG + chr3_4:28948536-28948555 None:intergenic 45.0%
!! ACCATTTTTGCGGATGGTTC+CGG + chr3_4:28948557-28948576 None:intergenic 45.0%
ACGTGCCCCTACAATATCAA+GGG + chr3_4:28948942-28948961 None:intergenic 45.0%
CCATCACACACTGCGAAATT+AGG + chr3_4:28949105-28949124 None:intergenic 45.0%
CCTAATTTCGCAGTGTGTGA+TGG - chr3_4:28949102-28949121 Msa0497000:intron 45.0%
AATTTCGCAGTGTGTGATGG+CGG - chr3_4:28949105-28949124 Msa0497000:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_4:28949179-28949198 Msa0497000:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr3_4:28949182-28949201 Msa0497000:intron 45.0%
CAGAACTTATGTAGCCCAAG+AGG + chr3_4:28950197-28950216 None:intergenic 45.0%
! TTTTTCCAATGGGATCCAGG+AGG + chr3_4:28950451-28950470 None:intergenic 45.0%
TCCTGGATCCCATTGGAAAA+AGG - chr3_4:28950450-28950469 Msa0497000:intron 45.0%
! ACCTTTTTCCAATGGGATCC+AGG + chr3_4:28950454-28950473 None:intergenic 45.0%
! TGAAGGAAAAAGCACAGCCT+TGG - chr3_4:28950679-28950698 Msa0497000:CDS 45.0%
! CATTTCACTTTAGCTCCTCG+AGG - chr3_4:28950838-28950857 Msa0497000:intron 45.0%
ATACTGCACTGTGATCGCTT+CGG + chr3_4:28950874-28950893 None:intergenic 45.0%
ATCTCAAGATGTTCAGCTGG+TGG + chr3_4:28950907-28950926 None:intergenic 45.0%
TGGATGGTCAAAAGAGCTGT+TGG + chr3_4:28950949-28950968 None:intergenic 45.0%
ATTGCTACGAGCTTGAGAAG+AGG - chr3_4:28951231-28951250 Msa0497000:intron 45.0%
TGCTGTTCGCTTCAAAGGTA+AGG - chr3_4:28951443-28951462 Msa0497000:intron 45.0%
ACTCGAGCATATGGGTCAAA+AGG + chr3_4:28951502-28951521 None:intergenic 45.0%
GACGAAATTGATGAGGACGA+GGG + chr3_4:28951525-28951544 None:intergenic 45.0%
TGACGAAATTGATGAGGACG+AGG + chr3_4:28951526-28951545 None:intergenic 45.0%
! AATTTACTGGCTGCTCGACT+TGG + chr3_4:28951654-28951673 Msa0497010:CDS 45.0%
AAGTCGAGCAGCCAGTAAAT+TGG - chr3_4:28951653-28951672 Msa0497000:intron 45.0%
GCACACCATGTGATTGGATA+AGG - chr3_4:28951861-28951880 Msa0497000:intron 45.0%
! CTGAGCCTTATCCAATCACA+TGG + chr3_4:28951869-28951888 Msa0497010:CDS 45.0%
! TGGTCTTGGGAAACAGATAC+AGG + chr3_4:28951921-28951940 Msa0497010:CDS 45.0%
! GCTTGATCAAGAGCATGAAG+TGG + chr3_4:28952111-28952130 Msa0497010:CDS 45.0%
CTTCATGCTCTTGATCAAGC+TGG - chr3_4:28952111-28952130 Msa0497000:intron 45.0%
CCAACTTCCGTTCAATCCTA+CGG + chr3_4:28952268-28952287 Msa0497010:CDS 45.0%
TAGGATTGAACGGAAGTTGG+TGG - chr3_4:28952268-28952287 Msa0497000:intron 45.0%
GTTGAAGCTTGTATGCTCTG+AGG + chr3_4:28952344-28952363 Msa0497010:CDS 45.0%
AGTCAATTTCAATTCCGCCG+TGG + chr3_4:28952392-28952411 Msa0497010:CDS 45.0%
AGTCTCCGATGTTATGATCC+CGG + chr3_4:28952574-28952593 Msa0497010:CDS 45.0%
!! GCTTAAAAGCACTGATTGCG+CGG - chr3_4:28952600-28952619 Msa0497000:intron 45.0%
CTCTCACATAACACAATCGG+CGG + chr3_4:28952628-28952647 Msa0497010:CDS 45.0%
GCCGATTGTGTTATGTGAGA+GGG - chr3_4:28952627-28952646 Msa0497000:intron 45.0%
GATAGTGAAACCCACACTGT+TGG + chr3_4:28952722-28952741 Msa0497010:CDS 45.0%
! AGGGAAGGTGATTTAGAACG+TGG - chr3_4:28952856-28952875 Msa0497000:intron 45.0%
!! TTAGTTCTTTGGGGTTCTCC+TGG - chr3_4:28952902-28952921 Msa0497000:intron 45.0%
GAGGATGAAGTCAAACCAGA+AGG + chr3_4:28953078-28953097 Msa0497010:CDS 45.0%
AGCTCTGTTAGATCAGATGG+TGG + chr3_4:28953379-28953398 Msa0497010:CDS 45.0%
! CTGATCTAACAGAGCTTTGG+CGG - chr3_4:28953383-28953402 Msa0497000:intron 45.0%
GTGACGAGAGCAGAATTTGA+CGG + chr3_4:28953420-28953439 Msa0497010:CDS 45.0%
TCAAATTCTGCTCTCGTCAC+CGG - chr3_4:28953420-28953439 Msa0497000:intron 45.0%
TGATACCAACTGACGCAGTA+CGG - chr3_4:28953494-28953513 Msa0497000:intron 45.0%
CAGAACTTATGTAGCCCAAG+AGG + chr3_4:28950197-28950216 None:intergenic 45.0%
CTCTCAATCATGATGCAGGA+GGG + chr3_4:28953835-28953854 Msa0497010:CDS 45.0%
ACTCTCAATCATGATGCAGG+AGG + chr3_4:28953836-28953855 Msa0497010:CDS 45.0%
GGAGGTAACTTTGGTTGTGT+TGG - chr3_4:28954091-28954110 Msa0497000:intron 45.0%
! TGGATGGATTCTTGTATGGC+AGG - chr3_4:28954246-28954265 Msa0497000:intron 45.0%
TCTTGTATGGCAGGTTGTTG+AGG - chr3_4:28954255-28954274 Msa0497000:intron 45.0%
GAGGTTTCAACCTCAAAGAC+CGG - chr3_4:28954274-28954293 Msa0497000:intron 45.0%
!! CATGCCAAGTGTCACTTTGT+TGG - chr3_4:28954307-28954326 Msa0497000:intron 45.0%
TAGTCGGTACGATTCACATG+GGG + chr3_4:28954486-28954505 Msa0497010:CDS 45.0%
GATAGTCGGTACGATTCACA+TGG + chr3_4:28954488-28954507 Msa0497010:CDS 45.0%
AGGAAGCTTCAAGTCATCCT+TGG + chr3_4:28954671-28954690 None:intergenic 45.0%
GTAAGCAGATTGTCATCGGT+AGG + chr3_4:28954691-28954710 None:intergenic 45.0%
CGATGACAATCTGCTTACTC+AGG - chr3_4:28954693-28954712 Msa0497000:intron 45.0%
TCATACGGCCTTAAAAGAGG+GGG - chr3_4:28955195-28955214 Msa0497000:intron 45.0%
!! TAAAGTGGTGGGTCATGCAT+TGG + chr3_4:28955422-28955441 None:intergenic 45.0%
TCATGGTGTGTCTCACACTT+TGG + chr3_4:28955459-28955478 None:intergenic 45.0%
TTATCGGTCACTGCAGATCA+AGG - chr3_4:28956175-28956194 Msa0497000:intron 45.0%
! GATCAAGGAAGGTTTTGCTG+AGG - chr3_4:28956190-28956209 Msa0497000:intron 45.0%
AACCCTTTGGTTATGGACAC+TGG - chr3_4:28956365-28956384 Msa0497000:intron 45.0%
GACCAGTGTCCATAACCAAA+GGG + chr3_4:28956370-28956389 None:intergenic 45.0%
TGACCAGTGTCCATAACCAA+AGG + chr3_4:28956371-28956390 None:intergenic 45.0%
!!! TAAATATGAATTTTTTAAAA+CGG - chr3_4:28949710-28949729 Msa0497000:intron 5.0%
!!! ATTTTTTATAAAAAAAACTT+GGG + chr3_4:28956463-28956482 None:intergenic 5.0%
!!! TATTTTTTATAAAAAAAACT+TGG + chr3_4:28956464-28956483 None:intergenic 5.0%
ACTCATCATCATGTCGGACG+AGG - chr3_4:28948474-28948493 Msa0497000:three_prime_UTR 50.0%
CACGTGCCCCTACAATATCA+AGG + chr3_4:28948943-28948962 None:intergenic 50.0%
! GATATTGTAGGGGCACGTGA+TGG - chr3_4:28948944-28948963 Msa0497000:intron 50.0%
! GAACACTCTAAAGGGCAACC+CGG + chr3_4:28949248-28949267 None:intergenic 50.0%
TGGAGGAGATTGATGCAGCA+GGG + chr3_4:28950345-28950364 None:intergenic 50.0%
TGAACAAGAGACCATCCTCC+TGG - chr3_4:28950433-28950452 Msa0497000:intron 50.0%
GCACTTCAAGACTCAGTCCA+AGG + chr3_4:28950699-28950718 None:intergenic 50.0%
CGTTGAACAGCTCTTCACTC+AGG + chr3_4:28950764-28950783 None:intergenic 50.0%
! TTCGGAGCTCTTTTACCTCG+AGG + chr3_4:28950856-28950875 None:intergenic 50.0%
AGGATGACCTCACAGACTGT+TGG + chr3_4:28951335-28951354 None:intergenic 50.0%
GTTAGACTACAGTTGCAGGG+TGG + chr3_4:28951978-28951997 Msa0497010:CDS 50.0%
! TATTTGCTGCTGTGGTCAGC+AGG + chr3_4:28952013-28952032 Msa0497010:CDS 50.0%
! GTTGGTGAGTTGAGTTGCCT+CGG - chr3_4:28952167-28952186 Msa0497000:intron 50.0%
! TTGGTGAGTTGAGTTGCCTC+GGG - chr3_4:28952168-28952187 Msa0497000:intron 50.0%
! TAAACCGAGTGTTGCAGCCA+TGG - chr3_4:28952191-28952210 Msa0497000:intron 50.0%
CCGTAGGATTGAACGGAAGT+TGG - chr3_4:28952265-28952284 Msa0497000:intron 50.0%
!! GATTGAACGGAAGTTGGTGG+TGG - chr3_4:28952271-28952290 Msa0497000:intron 50.0%
ATTCGAATCAGCTTCCACGG+CGG - chr3_4:28952375-28952394 Msa0497000:intron 50.0%
GCAGCAGCAACACTTCTATC+AGG - chr3_4:28952421-28952440 Msa0497000:intron 50.0%
GCAGCAACACTTCTATCAGG+TGG - chr3_4:28952424-28952443 Msa0497000:intron 50.0%
GTTTCGGTAGCAGTGCAATC+AGG - chr3_4:28952446-28952465 Msa0497000:intron 50.0%
CAACGCAACTAGAAACCCAC+CGG - chr3_4:28952552-28952571 Msa0497000:intron 50.0%
AACGCAACTAGAAACCCACC+GGG - chr3_4:28952553-28952572 Msa0497000:intron 50.0%
ACCCACCGGGATCATAACAT+CGG - chr3_4:28952566-28952585 Msa0497000:intron 50.0%
TCCGATGTTATGATCCCGGT+GGG + chr3_4:28952570-28952589 Msa0497010:CDS 50.0%
! CGCCGATTGTGTTATGTGAG+AGG - chr3_4:28952626-28952645 Msa0497000:intron 50.0%
CAATCTGCAACGCTTTGGTG+AGG + chr3_4:28952665-28952684 Msa0497010:CDS 50.0%
!! GGAGATTGACTTGACTCTCC+CGG - chr3_4:28952970-28952989 Msa0497000:intron 50.0%
CTGAAAGACCTTCGTGTTGC+CGG - chr3_4:28953043-28953062 Msa0497000:intron 50.0%
GAAAATCTCCGGCAACACGA+AGG + chr3_4:28953054-28953073 Msa0497010:CDS 50.0%
! TGCCGGAGATTTTCACCTTC+TGG - chr3_4:28953060-28953079 Msa0497000:intron 50.0%
TGTGGACCAATTAGGGTTCG+TGG + chr3_4:28953267-28953286 Msa0497010:CDS 50.0%
ATCAGCCATGGGAGATCAAC+CGG + chr3_4:28953442-28953461 Msa0497010:CDS 50.0%
ACCTCAAAGACCGGTAAGCA+TGG - chr3_4:28954283-28954302 Msa0497000:intron 50.0%
ACCATGCTTACCGGTCTTTG+AGG + chr3_4:28954287-28954306 Msa0497010:CDS 50.0%
CTTGGCATGACCATGCTTAC+CGG + chr3_4:28954296-28954315 Msa0497010:CDS 50.0%
ACGATTCACATGGGGAACCT+AGG + chr3_4:28954478-28954497 Msa0497010:CDS 50.0%
GCATGACCCACCACTTTAAG+TGG - chr3_4:28955424-28955443 Msa0497000:intron 50.0%
! GGAAGGTTTTGCTGAGGGTA+AGG - chr3_4:28956196-28956215 Msa0497000:intron 50.0%
CAGACATCACGGACACAACA+AGG + chr3_4:28956223-28956242 None:intergenic 50.0%
TGTGTCCGTGATGTCTGCTA+TGG - chr3_4:28956226-28956245 Msa0497000:intron 50.0%
GTGTCCGTGATGTCTGCTAT+GGG - chr3_4:28956227-28956246 Msa0497000:intron 50.0%
CTCACCCATAGCAGACATCA+CGG + chr3_4:28956234-28956253 None:intergenic 50.0%
AGTCTTGGAAGCTCCGGCAT+CGG + chr3_4:28948521-28948540 None:intergenic 55.0%
GCCGGAACCATCCGCAAAAA+TGG - chr3_4:28948553-28948572 Msa0497000:three_prime_UTR 55.0%
! CCAAATGGTGGGACCTTTCC+CGG - chr3_4:28949194-28949213 Msa0497000:intron 55.0%
TTTCCCGGACCCTGCATATG+CGG - chr3_4:28949209-28949228 Msa0497000:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr3_4:28949221-28949240 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr3_4:28949222-28949241 None:intergenic 55.0%
! TTGACGCAGTACGGAAGCGT+AGG - chr3_4:28950013-28950032 Msa0497000:intron 55.0%
! TGACGCAGTACGGAAGCGTA+GGG - chr3_4:28950014-28950033 Msa0497000:intron 55.0%
GTGGAGGAGATTGATGCAGC+AGG + chr3_4:28950346-28950365 None:intergenic 55.0%
GTCGAGTTCTTCAGAGGTGG+AGG + chr3_4:28950362-28950381 None:intergenic 55.0%
ACCATCCTCCTGGATCCCAT+TGG - chr3_4:28950443-28950462 Msa0497000:intron 55.0%
TCCAATGGGATCCAGGAGGA+TGG + chr3_4:28950447-28950466 None:intergenic 55.0%
GACTGTTGGACGTCTCCTAG+TGG + chr3_4:28951321-28951340 None:intergenic 55.0%
GAGACGTCCAACAGTCTGTG+AGG - chr3_4:28951325-28951344 Msa0497000:intron 55.0%
TGGCTCTCTACGCAACGGAA+AGG + chr3_4:28951355-28951374 None:intergenic 55.0%
GGAGCTGCTGTTCGCTTCAA+AGG - chr3_4:28951438-28951457 Msa0497000:intron 55.0%
GACGAGGGACTCGAGCATAT+GGG + chr3_4:28951510-28951529 None:intergenic 55.0%
TGCAACACTCGGTTTACCCG+AGG + chr3_4:28952187-28952206 Msa0497010:CDS 55.0%
ACCACCATGGCTGCAACACT+CGG + chr3_4:28952198-28952217 Msa0497010:CDS 55.0%
!! ATGGTTGGAAGTGCTGTCGG+AGG - chr3_4:28952315-28952334 Msa0497000:intron 55.0%
!! TGGTTGGAAGTGCTGTCGGA+GGG - chr3_4:28952316-28952335 Msa0497000:intron 55.0%
GCATTGCAGATTGGAGGGAG+AGG - chr3_4:28952507-28952526 Msa0497000:intron 55.0%
CTCCGATGTTATGATCCCGG+TGG + chr3_4:28952571-28952590 Msa0497010:CDS 55.0%
CGTCGTAGTTGCGGTTGTTG+CGG - chr3_4:28953310-28953329 Msa0497000:intron 55.0%
! GCGTCAGTTGGTATCAGAGC+AGG + chr3_4:28953490-28953509 Msa0497010:CDS 55.0%
! TGACGCAGTACGGAAGCGTA+GGG - chr3_4:28950014-28950033 Msa0497000:intron 55.0%
CGGTCACTGCAGATCAAGGA+AGG - chr3_4:28956179-28956198 Msa0497000:intron 55.0%
CGTGATGTCTGCTATGGGTG+AGG - chr3_4:28956232-28956251 Msa0497000:intron 55.0%
!! CGGATGGTTCCGGCTTGTTG+AGG + chr3_4:28948547-28948566 None:intergenic 60.0%
CCGGGAAAGGTCCCACCATT+TGG + chr3_4:28949197-28949216 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+AGG + chr3_4:28949210-28949229 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr3_4:28949210-28949229 Msa0497000:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr3_4:28949226-28949245 Msa0497000:intron 60.0%
GGGGTCGAGTTCTTCAGAGG+TGG + chr3_4:28950365-28950384 None:intergenic 60.0%
CTCGGGGTCGAGTTCTTCAG+AGG + chr3_4:28950368-28950387 None:intergenic 60.0%
GGACGAGGGACTCGAGCATA+TGG + chr3_4:28951511-28951530 None:intergenic 60.0%
! ACCGAGTGTTGCAGCCATGG+TGG - chr3_4:28952194-28952213 Msa0497000:intron 60.0%
! CGTCACCGGTTGATCTCCCA+TGG - chr3_4:28953434-28953453 Msa0497000:intron 60.0%
CGCTTCCGTACTGCGTCAGT+TGG + chr3_4:28953502-28953521 Msa0497010:CDS 60.0%
! CTGACGCAGTACGGAAGCGT+AGG - chr3_4:28953503-28953522 Msa0497000:intron 60.0%
CTCCCGCATATGCAGGGTCC+GGG + chr3_4:28949215-28949234 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr3_4:28949216-28949235 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr3_4:28949227-28949246 Msa0497000:intron 65.0%
! TGCAGCCATGGTGGTGCGAG+CGG - chr3_4:28952203-28952222 Msa0497000:intron 65.0%
! AGCCATGGTGGTGCGAGCGG+CGG - chr3_4:28952206-28952225 Msa0497000:intron 70.0%
! CGCCGCCGCTCGCACCACCA+TGG + chr3_4:28952211-28952230 Msa0497010:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 28948293 28956708 28948293 ID=Msa0497000;Name=Msa0497000
chr3_4 mRNA 28948293 28956708 28948293 ID=Msa0497000-mRNA-1;Parent=Msa0497000;Name=Msa0497000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=191|1|1|1|0.75|0.8|5|413|160
chr3_4 exon 28948293 28948810 28948293 ID=Msa0497000-mRNA-1:exon:6678;Parent=Msa0497000-mRNA-1
chr3_4 exon 28950287 28950361 28950287 ID=Msa0497000-mRNA-1:exon:6677;Parent=Msa0497000-mRNA-1
chr3_4 exon 28950465 28950521 28950465 ID=Msa0497000-mRNA-1:exon:6676;Parent=Msa0497000-mRNA-1
chr3_4 exon 28950611 28950733 28950611 ID=Msa0497000-mRNA-1:exon:6675;Parent=Msa0497000-mRNA-1
chr3_4 exon 28956395 28956708 28956395 ID=Msa0497000-mRNA-1:exon:6674;Parent=Msa0497000-mRNA-1
chr3_4 five_prime_UTR 28956518 28956708 28956518 ID=Msa0497000-mRNA-1:five_prime_utr;Parent=Msa0497000-mRNA-1
chr3_4 CDS 28956395 28956517 28956395 ID=Msa0497000-mRNA-1:cds;Parent=Msa0497000-mRNA-1
chr3_4 CDS 28950611 28950733 28950611 ID=Msa0497000-mRNA-1:cds;Parent=Msa0497000-mRNA-1
chr3_4 CDS 28950465 28950521 28950465 ID=Msa0497000-mRNA-1:cds;Parent=Msa0497000-mRNA-1
chr3_4 CDS 28950287 28950361 28950287 ID=Msa0497000-mRNA-1:cds;Parent=Msa0497000-mRNA-1
chr3_4 CDS 28948706 28948810 28948706 ID=Msa0497000-mRNA-1:cds;Parent=Msa0497000-mRNA-1
chr3_4 three_prime_UTR 28948293 28948705 28948293 ID=Msa0497000-mRNA-1:three_prime_utr;Parent=Msa0497000-mRNA-1
Gene Sequence

>Msa0497000

ATGTCGGACGAGGAACACCACTTTGAGTCAAAAGCCGATGCCGGAGCTTCCAAGACTTATCCTCAACAAGCCGGAACCATCCGCAAAAATGGTTACATCGTTATCAAAAATCGTCCCTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACCGGTAAGCATGGTCATGCCAAGTGTCACTTTGTTGGAATCGATATTTTCACTTCCAAAAAGCTCGAAGATATTGTGCCCTCTTCCCACAATTGTGATGTTCCCCATGTGAATCGTACCGACTATCAATTGATCGATATTTCTGAAGATGGATTTGTGAGTCTGCTTACTGAAAATGGTAACACCAAGGATGACTTGAAGCTTCCTACCGATGACAATCTGCTTACTCAGATCAAGGAAGGTTTTGCTGAGGGTAAGGACCTTGTTGTGTCCGTGATGTCTGCTATGGGTGAGGAGCAGATTAATGCCCTGAAAGATATTGGTCCAAAAAACTAG
Protein sequence

>Msa0497000

MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDNLLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPKN*