AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448550 MtrunA17_Chr3g0091371 98.876 89 1 0 1 89 1 89 1.84e-60 179
Msa0448550 MtrunA17_Chr7g0235781 96.629 89 3 0 1 89 1 89 1.40e-59 176
Msa0448550 MtrunA17_Chr3g0091381 46.939 98 12 1 32 89 4 101 6.92e-18 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448550 AT1G48140.1 79.775 89 18 0 1 89 1 89 1.31e-51 157
Msa0448550 AT1G48140.2 83.333 72 12 0 1 72 1 72 5.21e-41 129

Find 54 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGATACACAATTCATTT+TGG 0.192836 3_3:+29268134 Msa0448550:three_prime_UTR
TAATTGCCATCACTGCTTTA+TGG 0.201906 3_3:+29266473 Msa0448550:CDS
CGGCCTCCTTCTTCATCAAT+TGG 0.274386 3_3:+29263250 Msa0448550:five_prime_UTR
ATATTACTATTTAGAGTAAA+AGG 0.291554 3_3:-29268036 None:intergenic
CATATCATATTTAGAGTAAC+TGG 0.291800 3_3:-29268165 None:intergenic
GGAAGCTAATCTTAAACTTC+AGG 0.337853 3_3:-29267963 None:intergenic
AATTGCCATCACTGCTTTAT+GGG 0.343013 3_3:+29266474 Msa0448550:CDS
AGCTTCCGGTGATTAATTAC+CGG 0.363607 3_3:+29267979 Msa0448550:three_prime_UTR
CCTTTGCTTCAAATATTCCT+TGG 0.386512 3_3:-29267898 None:intergenic
ATTATTTGCAACTCTTAATC+CGG 0.398304 3_3:-29267998 None:intergenic
TTAGACTCCGGCGGAGGTTA+CGG 0.406370 3_3:-29263219 None:intergenic
GCCATCACTGCTTTATGGGT+TGG 0.406869 3_3:+29266478 Msa0448550:CDS
ACCAACCAAGTATGACTTTG+AGG 0.427005 3_3:-29266523 None:intergenic
AAAGAGAATGAATACGTTAG+TGG 0.431366 3_3:-29268077 None:intergenic
AGGATGTTACGGTCTATTGA+TGG 0.435428 3_3:+29266892 Msa0448550:CDS
GAGGCGCGGTGGTTGATATG+AGG 0.442019 3_3:-29263156 None:intergenic
TCATTCCTCAAAGTCATACT+TGG 0.460967 3_3:+29266518 Msa0448550:CDS
AGAAGCCCTGTTGTTGCAAA+AGG 0.467171 3_3:+29266952 Msa0448550:CDS
CAAGGAATATTTGAAGCAAA+GGG 0.473157 3_3:+29267899 Msa0448550:CDS
GAATGATAGAAGTTTGTAGA+AGG 0.473750 3_3:-29266501 None:intergenic
GTCGTGTCTTTAGGATGTTA+CGG 0.478343 3_3:+29266881 Msa0448550:CDS
GACATACAAAACACATCAGT+TGG 0.484307 3_3:-29267937 None:intergenic
ACAGGATATTGTTGAGGCCA+AGG 0.487407 3_3:+29267881 Msa0448550:intron
GAAGCTAATCTTAAACTTCA+GGG 0.510747 3_3:-29267962 None:intergenic
GGTCTATTGATGGTTGGTGT+TGG 0.511980 3_3:+29266902 Msa0448550:CDS
AAAGACACGACAAAATAGAT+TGG 0.512576 3_3:-29266869 None:intergenic
AGGTTACGGTGGACTCAGAC+TGG 0.525991 3_3:-29263205 None:intergenic
AACAGCTTAGACTCCGGCGG+AGG 0.535309 3_3:-29263225 None:intergenic
CCAAGGAATATTTGAAGCAA+AGG 0.542512 3_3:+29267898 Msa0448550:CDS
TCCTCAAAGTCATACTTGGT+TGG 0.545138 3_3:+29266522 Msa0448550:CDS
GAGGCATGAGATGGCGGCGA+CGG 0.546304 3_3:-29263180 None:intergenic
AGGCGCGGTGGTTGATATGA+GGG 0.548459 3_3:-29263155 None:intergenic
GCCAACCCATAAAGCAGTGA+TGG 0.562669 3_3:-29266479 None:intergenic
TTCTTTACAGGATATTGTTG+AGG 0.565302 3_3:+29267875 Msa0448550:intron
TATTGTAAAGATATTGTCAC+TGG 0.566011 3_3:+29266450 Msa0448550:CDS
GCCGAAAACAGCTTAGACTC+CGG 0.568722 3_3:-29263231 None:intergenic
TGAAGTTTAAGATTAGCTTC+CGG 0.569765 3_3:+29267965 Msa0448550:three_prime_UTR
TACACACCAATTGATGAAGA+AGG 0.573386 3_3:-29263256 None:intergenic
TGCAACAACAGGGCTTCTTG+AGG 0.575185 3_3:-29266947 None:intergenic
CGGTGGACTCAGACTGGCTG+AGG 0.575523 3_3:-29263199 None:intergenic
CTGGCTGAGGCATGAGATGG+CGG 0.580343 3_3:-29263186 None:intergenic
AGGGCTTCTTGAGGACAAGT+AGG 0.584926 3_3:-29266938 None:intergenic
TTAATCCGGTAATTAATCAC+CGG 0.587097 3_3:-29267984 None:intergenic
GAGTCCACCGTAACCTCCGC+CGG 0.594004 3_3:+29263212 Msa0448550:five_prime_UTR
AGACTGGCTGAGGCATGAGA+TGG 0.598962 3_3:-29263189 None:intergenic
GACTCCGGCGGAGGTTACGG+TGG 0.611363 3_3:-29263216 None:intergenic
ATGGCGGCGACGGTGAGGCG+CGG 0.612006 3_3:-29263170 None:intergenic
GCGGCGACGGTGAGGCGCGG+TGG 0.612376 3_3:-29263167 None:intergenic
ATGAGATGGCGGCGACGGTG+AGG 0.620233 3_3:-29263175 None:intergenic
TGTTACGGTCTATTGATGGT+TGG 0.623593 3_3:+29266896 Msa0448550:CDS
CGCGGTGGTTGATATGAGGG+CGG 0.658085 3_3:-29263152 None:intergenic
GAAAACAGCTTAGACTCCGG+CGG 0.669709 3_3:-29263228 None:intergenic
ACACCAATTGATGAAGAAGG+AGG 0.684100 3_3:-29263253 None:intergenic
AAGGAATATTTGAAGCAAAG+GGG 0.722853 3_3:+29267900 Msa0448550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGATAAAATATTTAGAAA+CGG + chr3_3:29263954-29263973 Msa0448550:intron 10.0%
!!! ACACTTAATTTTAATTAAAA+AGG - chr3_3:29265860-29265879 None:intergenic 10.0%
!!! AAATATAAAAAAGCATAAAA+AGG - chr3_3:29266790-29266809 None:intergenic 10.0%
!! TATTACTAAGATTAAAATTA+GGG + chr3_3:29267197-29267216 Msa0448550:intron 10.0%
!!! CTTTTTTTTTTATTTTTGAG+AGG - chr3_3:29263929-29263948 None:intergenic 15.0%
!!! TTAACCAATTTTAACTTTTA+TGG + chr3_3:29264043-29264062 Msa0448550:intron 15.0%
!!! CTTATTATTTAAAATAGTGT+TGG - chr3_3:29264839-29264858 None:intergenic 15.0%
!! TCAAATATAAGTAAAAGTAA+CGG - chr3_3:29264951-29264970 None:intergenic 15.0%
!!! ATGTTTGTTTTATTCATTTA+GGG + chr3_3:29265080-29265099 Msa0448550:intron 15.0%
!!! AAATTTTTTATGCAAAATCA+GGG - chr3_3:29265586-29265605 None:intergenic 15.0%
!! TAAAAAGGAAAAAGAAATTA+TGG - chr3_3:29265845-29265864 None:intergenic 15.0%
!! AATGTATCAATTTCATTAAA+TGG - chr3_3:29265923-29265942 None:intergenic 15.0%
!!! ATAAAAATTAGCTATTTTTG+AGG + chr3_3:29267152-29267171 Msa0448550:intron 15.0%
!! CTATTACTAAGATTAAAATT+AGG + chr3_3:29267196-29267215 Msa0448550:intron 15.0%
!!! ATATTACTATTTAGAGTAAA+AGG - chr3_3:29268039-29268058 None:intergenic 15.0%
!! GAAAAATGTGTAAATGAAAA+TGG - chr3_3:29263291-29263310 None:intergenic 20.0%
!! ATTGCCATAAAAGTTAAAAT+TGG - chr3_3:29264050-29264069 None:intergenic 20.0%
!! ACATAATTCAATGTAATCAT+AGG - chr3_3:29264270-29264289 None:intergenic 20.0%
!! GAAAAATAAATAGCTTAAAC+AGG - chr3_3:29264768-29264787 None:intergenic 20.0%
!!! TAGTTTACCTTTTAAGTAAA+TGG + chr3_3:29264805-29264824 Msa0448550:intron 20.0%
!! ATTAGTAATTTGGATCTATT+TGG + chr3_3:29264880-29264899 Msa0448550:intron 20.0%
!!! AATAATCATTTGCTGAAATT+AGG + chr3_3:29265016-29265035 Msa0448550:intron 20.0%
!!! GATGTTTGTTTTATTCATTT+AGG + chr3_3:29265079-29265098 Msa0448550:intron 20.0%
!!! TGTTTGTTTTATTCATTTAG+GGG + chr3_3:29265081-29265100 Msa0448550:intron 20.0%
!! TTTACATCCTTATTATTGAT+GGG + chr3_3:29265406-29265425 Msa0448550:intron 20.0%
!!! CAAATTTTTTATGCAAAATC+AGG - chr3_3:29265587-29265606 None:intergenic 20.0%
!!! TTCTGCTATCTTATTTAATA+AGG + chr3_3:29266060-29266079 Msa0448550:intron 20.0%
!! TTTAAAAGTAAAACATGTGA+TGG - chr3_3:29266559-29266578 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGGTCTA+TGG + chr3_3:29266589-29266608 Msa0448550:intron 20.0%
!!! TAAAAAAGCATAAAAAGGTT+CGG - chr3_3:29266785-29266804 None:intergenic 20.0%
!!! CAATTGTTTGAAATAATTTC+AGG + chr3_3:29267096-29267115 Msa0448550:intron 20.0%
!!! ATAGCTAATTTTTATAGTGT+GGG - chr3_3:29267147-29267166 None:intergenic 20.0%
!!! AATAGCTAATTTTTATAGTG+TGG - chr3_3:29267148-29267167 None:intergenic 20.0%
!!! ATATTTTGATAGAAATAACG+AGG - chr3_3:29267342-29267361 None:intergenic 20.0%
!!! CAAACTTTGATAATCAATAT+GGG - chr3_3:29267448-29267467 None:intergenic 20.0%
!!! TCAAACTTTGATAATCAATA+TGG - chr3_3:29267449-29267468 None:intergenic 20.0%
!! ATGATAAAAATGTTCAATGA+GGG - chr3_3:29267513-29267532 None:intergenic 20.0%
!! TATGATAAAAATGTTCAATG+AGG - chr3_3:29267514-29267533 None:intergenic 20.0%
!!! ACTAATTATTTTACTGCTTA+AGG - chr3_3:29267809-29267828 None:intergenic 20.0%
!! TAAGCAGTAAAATAATTAGT+TGG + chr3_3:29267809-29267828 Msa0448550:intron 20.0%
!!! AGAGTTGCAAATAATTTTAT+TGG + chr3_3:29268006-29268025 Msa0448550:three_prime_UTR 20.0%
!! TGCTTTTCATTTTATGTGAT+CGG + chr3_3:29263335-29263354 Msa0448550:intron 25.0%
!!! GTTGTTTTCAAAAACTATCT+TGG - chr3_3:29263422-29263441 None:intergenic 25.0%
! ACAAATTTCAGTGTAATCAT+AGG - chr3_3:29263654-29263673 None:intergenic 25.0%
! TCTCAAATTATTATCCTTGT+CGG + chr3_3:29263679-29263698 Msa0448550:intron 25.0%
! ACTTTGATATGAATTTCATG+TGG + chr3_3:29263821-29263840 Msa0448550:intron 25.0%
! CAAATGCAACTAAAATGATA+AGG - chr3_3:29263985-29264004 None:intergenic 25.0%
! AGTTAAAATTGGTTAACAAC+CGG - chr3_3:29264039-29264058 None:intergenic 25.0%
! TTGTAAATCAATTGTATTGC+TGG - chr3_3:29264407-29264426 None:intergenic 25.0%
!!! ATTATACCACCATTACTTTT+AGG + chr3_3:29264636-29264655 Msa0448550:intron 25.0%
! AAATCTATGATCACAAACAA+TGG + chr3_3:29264737-29264756 Msa0448550:intron 25.0%
! TAATTTGGATCTATTTGGTT+AGG + chr3_3:29264885-29264904 Msa0448550:intron 25.0%
!! TTAGTTTGATTCTGAATTGA+TGG + chr3_3:29265104-29265123 Msa0448550:intron 25.0%
! GTTTACATCCTTATTATTGA+TGG + chr3_3:29265405-29265424 Msa0448550:intron 25.0%
! CAAATAAATACTAGAACAAG+AGG - chr3_3:29265486-29265505 None:intergenic 25.0%
! AGTATTTATTTGCATAACTC+TGG + chr3_3:29265494-29265513 Msa0448550:intron 25.0%
!! AATATCTGAAATGTAGTGTT+TGG - chr3_3:29265640-29265659 None:intergenic 25.0%
! GTGGTGAAATTAAAAATTCA+TGG + chr3_3:29265690-29265709 Msa0448550:intron 25.0%
! TAAAATGCAGTAAAAGTTAC+TGG + chr3_3:29265783-29265802 Msa0448550:intron 25.0%
!!! ATTTTTAGTTCAGCTTCTTA+AGG + chr3_3:29266142-29266161 Msa0448550:intron 25.0%
! ATCACAAAAGTTAAGTATGT+GGG - chr3_3:29266332-29266351 None:intergenic 25.0%
! TATCACAAAAGTTAAGTATG+TGG - chr3_3:29266333-29266352 None:intergenic 25.0%
! TATTGTAAAGATATTGTCAC+TGG + chr3_3:29266450-29266469 Msa0448550:CDS 25.0%
! GTAATAGCTAATTTCTAAAC+TGG - chr3_3:29267183-29267202 None:intergenic 25.0%
! ATGCAACATGATTTGAAAAT+TGG - chr3_3:29267254-29267273 None:intergenic 25.0%
!! ATGAAATGTGTAAGAAGTTT+TGG + chr3_3:29267580-29267599 Msa0448550:intron 25.0%
!!! AGTTTTGGATACAAAAACTT+TGG + chr3_3:29267595-29267614 Msa0448550:intron 25.0%
! TTTGAACCAAGTAAAGATTT+GGG - chr3_3:29267739-29267758 None:intergenic 25.0%
! ATTTGAACCAAGTAAAGATT+TGG - chr3_3:29267740-29267759 None:intergenic 25.0%
! ATTATTTGCAACTCTTAATC+CGG - chr3_3:29268001-29268020 None:intergenic 25.0%
!! ACATGATACACAATTCATTT+TGG + chr3_3:29268134-29268153 Msa0448550:three_prime_UTR 25.0%
GTTATATGCTGCAAATAAGT+TGG + chr3_3:29263532-29263551 Msa0448550:intron 30.0%
!! TCCATAGATTTTAGGAGATA+GGG + chr3_3:29263738-29263757 Msa0448550:intron 30.0%
! TGAAAATTTCAAGTGATGCT+GGG + chr3_3:29263768-29263787 Msa0448550:intron 30.0%
!!! TCATTTTAGTTGCATTTGCA+TGG + chr3_3:29263987-29264006 Msa0448550:intron 30.0%
!!! CATTTTAGTTGCATTTGCAT+GGG + chr3_3:29263988-29264007 Msa0448550:intron 30.0%
AAACACGTTGAATTAGATCA+TGG - chr3_3:29264134-29264153 None:intergenic 30.0%
TATTTAGCACAAATACTCCT+CGG + chr3_3:29264191-29264210 Msa0448550:intron 30.0%
!! GCGAGCTTATACTTTTTATT+AGG + chr3_3:29264497-29264516 Msa0448550:intron 30.0%
TGAAGAGCCATTTACTTAAA+AGG - chr3_3:29264815-29264834 None:intergenic 30.0%
TATGATGTCTGACTTATTGA+TGG + chr3_3:29264983-29265002 Msa0448550:intron 30.0%
! AATCATTTGCTGAAATTAGG+TGG + chr3_3:29265019-29265038 Msa0448550:intron 30.0%
TTAAACTTCCAAGTGATGTT+GGG + chr3_3:29265224-29265243 Msa0448550:intron 30.0%
AATATAACTAAAAGCCCTTG+CGG - chr3_3:29265255-29265274 None:intergenic 30.0%
GAACTGTGAAATGAATTTCA+TGG + chr3_3:29265275-29265294 Msa0448550:intron 30.0%
AACTATTTACAACTTCCATC+AGG - chr3_3:29265309-29265328 None:intergenic 30.0%
CACTACATTTCAGATATTGT+AGG + chr3_3:29265642-29265661 Msa0448550:intron 30.0%
AGGAAAAAGAAATTATGGCA+AGG - chr3_3:29265840-29265859 None:intergenic 30.0%
! TTGTCATTAGTGTTTTGTGA+TGG + chr3_3:29265950-29265969 Msa0448550:intron 30.0%
CGTATTCATGGTAAAATAGA+GGG - chr3_3:29266307-29266326 None:intergenic 30.0%
! TGTTGTGTATTTTCGAAAAG+AGG - chr3_3:29266374-29266393 None:intergenic 30.0%
GAATGATAGAAGTTTGTAGA+AGG - chr3_3:29266504-29266523 None:intergenic 30.0%
! TCTATGGTACAATGATGTTT+TGG + chr3_3:29266605-29266624 Msa0448550:intron 30.0%
! CTATGGTACAATGATGTTTT+GGG + chr3_3:29266606-29266625 Msa0448550:intron 30.0%
! TATGGTACAATGATGTTTTG+GGG + chr3_3:29266607-29266626 Msa0448550:intron 30.0%
TGTATTTCATGTCATAGCTT+TGG - chr3_3:29266652-29266671 None:intergenic 30.0%
AAAGACACGACAAAATAGAT+TGG - chr3_3:29266872-29266891 None:intergenic 30.0%
! ATCTATTTTGTCGTGTCTTT+AGG + chr3_3:29266872-29266891 Msa0448550:CDS 30.0%
! TTGTGCTTTTATAGTTCGTA+TGG + chr3_3:29267028-29267047 Msa0448550:intron 30.0%
! GTTTGAAATAATTTCAGGAC+TGG + chr3_3:29267101-29267120 Msa0448550:intron 30.0%
AGGGACATAAAATGTTATTG+TGG + chr3_3:29267216-29267235 Msa0448550:intron 30.0%
TCAAATCATGTTGCATAAAC+AGG + chr3_3:29267258-29267277 Msa0448550:intron 30.0%
CAAATCATGTTGCATAAACA+GGG + chr3_3:29267259-29267278 Msa0448550:intron 30.0%
AAAAATGTTCAATGAGGGAA+GGG - chr3_3:29267508-29267527 None:intergenic 30.0%
TAAAAATGTTCAATGAGGGA+AGG - chr3_3:29267509-29267528 None:intergenic 30.0%
CTTATTTAATCGAACTGAGA+TGG - chr3_3:29267672-29267691 None:intergenic 30.0%
CATCTCAGTTCGATTAAATA+AGG + chr3_3:29267670-29267689 Msa0448550:intron 30.0%
TTGAACCAAGTAAAGATTTG+GGG - chr3_3:29267738-29267757 None:intergenic 30.0%
! ACGAAATGAGCAACAATTTT+TGG - chr3_3:29267852-29267871 None:intergenic 30.0%
!! TCATTTCGTTGTTTCTTTAC+AGG + chr3_3:29267863-29267882 Msa0448550:intron 30.0%
TTCTTTACAGGATATTGTTG+AGG + chr3_3:29267875-29267894 Msa0448550:intron 30.0%
! CAAGGAATATTTGAAGCAAA+GGG + chr3_3:29267899-29267918 Msa0448550:CDS 30.0%
! AAGGAATATTTGAAGCAAAG+GGG + chr3_3:29267900-29267919 Msa0448550:CDS 30.0%
GAAGCTAATCTTAAACTTCA+GGG - chr3_3:29267965-29267984 None:intergenic 30.0%
!! TGAAGTTTAAGATTAGCTTC+CGG + chr3_3:29267965-29267984 Msa0448550:three_prime_UTR 30.0%
TTAATCCGGTAATTAATCAC+CGG - chr3_3:29267987-29268006 None:intergenic 30.0%
AAAGAGAATGAATACGTTAG+TGG - chr3_3:29268080-29268099 None:intergenic 30.0%
TACACACCAATTGATGAAGA+AGG - chr3_3:29263259-29263278 None:intergenic 35.0%
! TCATTTTATGTGATCGGAGA+TGG + chr3_3:29263341-29263360 Msa0448550:intron 35.0%
!! CTCCATAGATTTTAGGAGAT+AGG + chr3_3:29263737-29263756 Msa0448550:intron 35.0%
ACCCTATCTCCTAAAATCTA+TGG - chr3_3:29263742-29263761 None:intergenic 35.0%
! CAGCATCACTTGAAATTTTC+AGG - chr3_3:29263769-29263788 None:intergenic 35.0%
! CTGAAAATTTCAAGTGATGC+TGG + chr3_3:29263767-29263786 Msa0448550:intron 35.0%
GAAGCAAAGCCTAAAAGTAA+TGG - chr3_3:29264648-29264667 None:intergenic 35.0%
! TTTTCAGATACATCTGCCTA+TGG + chr3_3:29264909-29264928 Msa0448550:intron 35.0%
!!! AACAAGGGCTTTTAGCTTAT+TGG + chr3_3:29265192-29265211 Msa0448550:intron 35.0%
!!! ACAAGGGCTTTTAGCTTATT+GGG + chr3_3:29265193-29265212 Msa0448550:intron 35.0%
CAACATCACTTGGAAGTTTA+AGG - chr3_3:29265225-29265244 None:intergenic 35.0%
CTTAAACTTCCAAGTGATGT+TGG + chr3_3:29265223-29265242 Msa0448550:intron 35.0%
ATTTACAACTTCCATCAGGA+GGG - chr3_3:29265305-29265324 None:intergenic 35.0%
TATTTACAACTTCCATCAGG+AGG - chr3_3:29265306-29265325 None:intergenic 35.0%
AGAAGCTCCCATCAATAATA+AGG - chr3_3:29265416-29265435 None:intergenic 35.0%
!!! TTTTAGAACGGGTTAACAAC+TGG - chr3_3:29265447-29265466 None:intergenic 35.0%
!!! ATCATGGCAGTGTTTTAGAA+CGG - chr3_3:29265459-29265478 None:intergenic 35.0%
TAGAACAAGAGGAACAATCA+TGG - chr3_3:29265475-29265494 None:intergenic 35.0%
! ATTTGCATAACTCTGGTTTG+CGG + chr3_3:29265501-29265520 Msa0448550:intron 35.0%
ATATCCACGTATAAGCTTCA+TGG + chr3_3:29265733-29265752 Msa0448550:intron 35.0%
TAAACCATGAAGCTTATACG+TGG - chr3_3:29265740-29265759 None:intergenic 35.0%
AGAAAGCAGACAAGTAATTC+AGG - chr3_3:29266009-29266028 None:intergenic 35.0%
!! TGTTTTAGACGTTTAGCTCA+CGG + chr3_3:29266175-29266194 Msa0448550:intron 35.0%
GCGTATTCATGGTAAAATAG+AGG - chr3_3:29266308-29266327 None:intergenic 35.0%
TAATTGCCATCACTGCTTTA+TGG + chr3_3:29266473-29266492 Msa0448550:CDS 35.0%
AATTGCCATCACTGCTTTAT+GGG + chr3_3:29266474-29266493 Msa0448550:CDS 35.0%
TCATTCCTCAAAGTCATACT+TGG + chr3_3:29266518-29266537 Msa0448550:CDS 35.0%
CACATTATAAGTCCTCAATG+GGG - chr3_3:29266675-29266694 None:intergenic 35.0%
GCACATTATAAGTCCTCAAT+GGG - chr3_3:29266676-29266695 None:intergenic 35.0%
TGCACATTATAAGTCCTCAA+TGG - chr3_3:29266677-29266696 None:intergenic 35.0%
! ATAAAAAGGTTCGGTTAAGC+TGG - chr3_3:29266776-29266795 None:intergenic 35.0%
CTGCATAAAGAACAGAAGTA+TGG - chr3_3:29266846-29266865 None:intergenic 35.0%
! ACATACCTTTTGCAACAACA+GGG - chr3_3:29266960-29266979 None:intergenic 35.0%
! AACATACCTTTTGCAACAAC+AGG - chr3_3:29266961-29266980 None:intergenic 35.0%
ATGCAATTACTAATGCTCAG+AGG - chr3_3:29266987-29267006 None:intergenic 35.0%
AATCAATATGGGATACCCAA+TGG - chr3_3:29267437-29267456 None:intergenic 35.0%
!! AAGGATGTTGATGATAATGG+TGG - chr3_3:29267482-29267501 None:intergenic 35.0%
!! AGGAAGGATGTTGATGATAA+TGG - chr3_3:29267485-29267504 None:intergenic 35.0%
TTTAATCGAACTGAGATGGA+TGG - chr3_3:29267668-29267687 None:intergenic 35.0%
CCTTTGCTTCAAATATTCCT+TGG - chr3_3:29267901-29267920 None:intergenic 35.0%
! CCAAGGAATATTTGAAGCAA+AGG + chr3_3:29267898-29267917 Msa0448550:CDS 35.0%
GACATACAAAACACATCAGT+TGG - chr3_3:29267940-29267959 None:intergenic 35.0%
GGAAGCTAATCTTAAACTTC+AGG - chr3_3:29267966-29267985 None:intergenic 35.0%
ACACCAATTGATGAAGAAGG+AGG - chr3_3:29263256-29263275 None:intergenic 40.0%
! TTTTAGGCCATGAAGCACAA+CGG + chr3_3:29263590-29263609 Msa0448550:intron 40.0%
! GTCTGTGCTCCATAGATTTT+AGG + chr3_3:29263730-29263749 Msa0448550:intron 40.0%
! AACTATTTGCCACTTCCATC+AGG - chr3_3:29263853-29263872 None:intergenic 40.0%
CTTCTGTTGTCATGCATGAT+TGG + chr3_3:29263875-29263894 Msa0448550:intron 40.0%
! TGTAATCATAGGTGTCGTGT+CGG - chr3_3:29264259-29264278 None:intergenic 40.0%
AGGAAGATAGCTATGAAGCA+CGG - chr3_3:29264360-29264379 None:intergenic 40.0%
TTGCTGGACCCAAAAGAAAT+GGG - chr3_3:29264391-29264410 None:intergenic 40.0%
ATTGCTGGACCCAAAAGAAA+TGG - chr3_3:29264392-29264411 None:intergenic 40.0%
TGCTTGTAAAGTCCATCTGA+TGG + chr3_3:29264557-29264576 Msa0448550:intron 40.0%
GCAAAGCCTAAAAGTAATGG+TGG - chr3_3:29264645-29264664 None:intergenic 40.0%
ATACATCTGCCTATGGATGT+GGG + chr3_3:29264916-29264935 Msa0448550:intron 40.0%
!!! TCATGGCAGTGTTTTAGAAC+GGG - chr3_3:29265458-29265477 None:intergenic 40.0%
! TTTGCATAACTCTGGTTTGC+GGG + chr3_3:29265502-29265521 Msa0448550:intron 40.0%
AAATGTAGTGTTTGGATCCC+TGG - chr3_3:29265632-29265651 None:intergenic 40.0%
!!! CACAGCATGTTTTGTTTGTG+TGG + chr3_3:29265671-29265690 Msa0448550:intron 40.0%
!! AACTTCGTATGTGCTGACTA+AGG + chr3_3:29265811-29265830 Msa0448550:intron 40.0%
TGTCCATGTTGTGTCTATGT+TGG + chr3_3:29265890-29265909 Msa0448550:intron 40.0%
CAACCAACATAGACACAACA+TGG - chr3_3:29265896-29265915 None:intergenic 40.0%
GCATGTGTCTGACATGAATA+TGG + chr3_3:29265981-29266000 Msa0448550:intron 40.0%
TCCTCAAAGTCATACTTGGT+TGG + chr3_3:29266522-29266541 Msa0448550:CDS 40.0%
ACCAACCAAGTATGACTTTG+AGG - chr3_3:29266526-29266545 None:intergenic 40.0%
CAAAGTCATACTTGGTTGGT+AGG + chr3_3:29266526-29266545 Msa0448550:intron 40.0%
ACATGAAATACACCCCATTG+AGG + chr3_3:29266660-29266679 Msa0448550:intron 40.0%
AGACTTTGCTTGTAAGGCTT+AGG - chr3_3:29266743-29266762 None:intergenic 40.0%
GATCGAAGACTTTGCTTGTA+AGG - chr3_3:29266749-29266768 None:intergenic 40.0%
!! GTCGTGTCTTTAGGATGTTA+CGG + chr3_3:29266881-29266900 Msa0448550:CDS 40.0%
AGGATGTTACGGTCTATTGA+TGG + chr3_3:29266892-29266911 Msa0448550:CDS 40.0%
! TGTTACGGTCTATTGATGGT+TGG + chr3_3:29266896-29266915 Msa0448550:CDS 40.0%
CAATTACTAATGCTCAGAGG+TGG - chr3_3:29266984-29267003 None:intergenic 40.0%
TGCATAAACAGGGTAATCCT+CGG + chr3_3:29267269-29267288 Msa0448550:intron 40.0%
AAGAAATCAGACTCCAGTTG+TGG + chr3_3:29267403-29267422 Msa0448550:intron 40.0%
GAGTACTCAGAAACTTAGTC+TGG - chr3_3:29267554-29267573 None:intergenic 40.0%
TGCAAAACTGTCTGGTGTAA+TGG + chr3_3:29267641-29267660 Msa0448550:intron 40.0%
TCAAGCCCCAAATCTTTACT+TGG + chr3_3:29267730-29267749 Msa0448550:intron 40.0%
!! TAAGGAGCATTTAAGAGGAC+AGG - chr3_3:29267791-29267810 None:intergenic 40.0%
!! CTGCTTAAGGAGCATTTAAG+AGG - chr3_3:29267796-29267815 None:intergenic 40.0%
AGCTTCCGGTGATTAATTAC+CGG + chr3_3:29267979-29267998 Msa0448550:three_prime_UTR 40.0%
ATCCAAACCAGCCCATATTC+CGG + chr3_3:29263557-29263576 Msa0448550:intron 45.0%
ACCCATGTTTGCCGGAATAT+GGG - chr3_3:29263571-29263590 None:intergenic 45.0%
AACCCATGTTTGCCGGAATA+TGG - chr3_3:29263572-29263591 None:intergenic 45.0%
! TTCCGGCAAACATGGGTTTT+AGG + chr3_3:29263574-29263593 Msa0448550:intron 45.0%
ACCTAATCCGTTGTGCTTCA+TGG - chr3_3:29263600-29263619 None:intergenic 45.0%
!!! GCACAACGGATTAGGTGTTT+TGG + chr3_3:29263604-29263623 Msa0448550:intron 45.0%
! TGTAATCATAGGTGTCGCGT+CGG - chr3_3:29263643-29263662 None:intergenic 45.0%
! ATTTGCCACTTCCATCAGGT+GGG - chr3_3:29263849-29263868 None:intergenic 45.0%
! TATTTGCCACTTCCATCAGG+TGG - chr3_3:29263850-29263869 None:intergenic 45.0%
GCATTTGCATGGGTAGAGAT+TGG + chr3_3:29263998-29264017 Msa0448550:intron 45.0%
GGTTAACAACCGGTACATCA+TGG - chr3_3:29264029-29264048 None:intergenic 45.0%
GCACAAATACTCCTCGGATT+AGG + chr3_3:29264197-29264216 Msa0448550:intron 45.0%
CTTCATAGCTATCTTCCTGC+TGG + chr3_3:29264362-29264381 Msa0448550:intron 45.0%
! AAAAGAAATGGGCTTCCAGC+AGG - chr3_3:29264380-29264399 None:intergenic 45.0%
! TGCTGGAAGCCCATTTCTTT+TGG + chr3_3:29264379-29264398 Msa0448550:intron 45.0%
! GCTGGAAGCCCATTTCTTTT+GGG + chr3_3:29264380-29264399 Msa0448550:intron 45.0%
TTGTAGCTACTGCCATCAGA+TGG - chr3_3:29264572-29264591 None:intergenic 45.0%
GATACATCTGCCTATGGATG+TGG + chr3_3:29264915-29264934 Msa0448550:intron 45.0%
TGTTCATAGCTGCCTAGTTC+TGG + chr3_3:29265168-29265187 Msa0448550:intron 45.0%
ATGTCAGACACATGCTCAAC+AGG - chr3_3:29265976-29265995 None:intergenic 45.0%
AGTATGTGGGTGCGTATTCA+TGG - chr3_3:29266319-29266338 None:intergenic 45.0%
TTGGGGTGAGAAAGCTTATC+TGG + chr3_3:29266624-29266643 Msa0448550:intron 45.0%
TAGACTACCGAAGAGATTGC+TGG + chr3_3:29266703-29266722 Msa0448550:intron 45.0%
CCATCTTCCAGCAATCTCTT+CGG - chr3_3:29266713-29266732 None:intergenic 45.0%
! GGTCTATTGATGGTTGGTGT+TGG + chr3_3:29266902-29266921 Msa0448550:CDS 45.0%
AGAAGCCCTGTTGTTGCAAA+AGG + chr3_3:29266952-29266971 Msa0448550:CDS 45.0%
AATGGAGTGAATGCCACAAC+TGG - chr3_3:29267419-29267438 None:intergenic 45.0%
AGTTGTGGCATTCACTCCAT+TGG + chr3_3:29267418-29267437 Msa0448550:intron 45.0%
GTTGTGGCATTCACTCCATT+GGG + chr3_3:29267419-29267438 Msa0448550:intron 45.0%
AATGTTCAATGAGGGAAGGG+AGG - chr3_3:29267505-29267524 None:intergenic 45.0%
! GTTTTGCAGACAAGGCGAAA+AGG - chr3_3:29267629-29267648 None:intergenic 45.0%
! ACCAGACAGTTTTGCAGACA+AGG - chr3_3:29267637-29267656 None:intergenic 45.0%
ACAGGATATTGTTGAGGCCA+AGG + chr3_3:29267881-29267900 Msa0448550:intron 45.0%
!! TATAAATTAAATTAGTAATT+TGG + chr3_3:29264870-29264889 Msa0448550:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG + chr3_3:29266582-29266601 Msa0448550:intron 5.0%
GAAAACAGCTTAGACTCCGG+CGG - chr3_3:29263231-29263250 None:intergenic 50.0%
!! GCCGGAGTCTAAGCTGTTTT+CGG + chr3_3:29263230-29263249 Msa0448550:five_prime_UTR 50.0%
GCCGAAAACAGCTTAGACTC+CGG - chr3_3:29263234-29263253 None:intergenic 50.0%
CGGCCTCCTTCTTCATCAAT+TGG + chr3_3:29263250-29263269 Msa0448550:five_prime_UTR 50.0%
ATGTTTGCCGGAATATGGGC+TGG - chr3_3:29263567-29263586 None:intergenic 50.0%
AGCCCATATTCCGGCAAACA+TGG + chr3_3:29263566-29263585 Msa0448550:intron 50.0%
GCCCATATTCCGGCAAACAT+GGG + chr3_3:29263567-29263586 Msa0448550:intron 50.0%
GGCCTAAAACCCATGTTTGC+CGG - chr3_3:29263579-29263598 None:intergenic 50.0%
! GCCATGAAGCACAACGGATT+AGG + chr3_3:29263596-29263615 Msa0448550:intron 50.0%
ACCAGAACACGACATGGACA+CGG - chr3_3:29263710-29263729 None:intergenic 50.0%
ACAGACACCAGAACACGACA+TGG - chr3_3:29263716-29263735 None:intergenic 50.0%
TTCATGTGGATCCCACCTGA+TGG + chr3_3:29263835-29263854 Msa0448550:intron 50.0%
TTGGAGCTGCCATGATGTAC+CGG + chr3_3:29264017-29264036 Msa0448550:intron 50.0%
TATTATCCGTGTCCGCGTGT+CGG + chr3_3:29264303-29264322 Msa0448550:intron 50.0%
CTATGAAGCACGGACAGACA+AGG - chr3_3:29264350-29264369 None:intergenic 50.0%
ATCTGCCTATGGATGTGGGA+TGG + chr3_3:29264920-29264939 Msa0448550:intron 50.0%
CTCAACCATCCCACATCCAT+AGG - chr3_3:29264928-29264947 None:intergenic 50.0%
!! CTGCCTAGTTCTGGCAACAA+GGG + chr3_3:29265177-29265196 Msa0448550:intron 50.0%
AAGCCCTTGTTGCCAGAACT+AGG - chr3_3:29265183-29265202 None:intergenic 50.0%
CGGAGTTTCCCAACATCACT+TGG - chr3_3:29265235-29265254 None:intergenic 50.0%
TGATGTTGGGAAACTCCGCA+AGG + chr3_3:29265237-29265256 Msa0448550:intron 50.0%
GATGTTGGGAAACTCCGCAA+GGG + chr3_3:29265238-29265257 Msa0448550:intron 50.0%
TTCATGGTGATCCCTCCTGA+TGG + chr3_3:29265291-29265310 Msa0448550:intron 50.0%
TTCCATTGTGAAGCACGACC+AGG + chr3_3:29265611-29265630 Msa0448550:intron 50.0%
TCCATTGTGAAGCACGACCA+GGG + chr3_3:29265612-29265631 Msa0448550:intron 50.0%
GCCATCACTGCTTTATGGGT+TGG + chr3_3:29266478-29266497 Msa0448550:CDS 50.0%
GCCAACCCATAAAGCAGTGA+TGG - chr3_3:29266482-29266501 None:intergenic 50.0%
CCGAAGAGATTGCTGGAAGA+TGG + chr3_3:29266710-29266729 Msa0448550:intron 50.0%
AGGGCTTCTTGAGGACAAGT+AGG - chr3_3:29266941-29266960 None:intergenic 50.0%
TGCAACAACAGGGCTTCTTG+AGG - chr3_3:29266950-29266969 None:intergenic 50.0%
AACTCCTTGATGTCCACCAC+TGG + chr3_3:29267300-29267319 Msa0448550:intron 50.0%
TTGATGTCCACCACTGGACT+GGG + chr3_3:29267306-29267325 Msa0448550:intron 50.0%
TAATGAACCCAGTCCAGTGG+TGG - chr3_3:29267316-29267335 None:intergenic 50.0%
CCTTAATGAACCCAGTCCAG+TGG - chr3_3:29267319-29267338 None:intergenic 50.0%
! CCACTGGACTGGGTTCATTA+AGG + chr3_3:29267316-29267335 Msa0448550:intron 50.0%
TTCAATGAGGGAAGGGAGGA+AGG - chr3_3:29267501-29267520 None:intergenic 50.0%
GCCTTGTCTGCAAAACTGTC+TGG + chr3_3:29267633-29267652 Msa0448550:intron 50.0%
! AGGCGCGGTGGTTGATATGA+GGG - chr3_3:29263158-29263177 None:intergenic 55.0%
! AGACTGGCTGAGGCATGAGA+TGG - chr3_3:29263192-29263211 None:intergenic 55.0%
! AGGTTACGGTGGACTCAGAC+TGG - chr3_3:29263208-29263227 None:intergenic 55.0%
TTAGACTCCGGCGGAGGTTA+CGG - chr3_3:29263222-29263241 None:intergenic 55.0%
!! TGCCGGAATATGGGCTGGTT+TGG - chr3_3:29263562-29263581 None:intergenic 55.0%
TCCGTGTCCATGTCGTGTTC+TGG + chr3_3:29263706-29263725 Msa0448550:intron 55.0%
TGATGCTGGGCAATTGCGCA+AGG + chr3_3:29263781-29263800 Msa0448550:intron 55.0%
GATGCTGGGCAATTGCGCAA+GGG + chr3_3:29263782-29263801 Msa0448550:intron 55.0%
TGGATCCCACCTGATGGAAG+TGG + chr3_3:29263841-29263860 Msa0448550:intron 55.0%
AAGGACACCGGACACAACAC+GGG - chr3_3:29264331-29264350 None:intergenic 55.0%
CAAGGACACCGGACACAACA+CGG - chr3_3:29264332-29264351 None:intergenic 55.0%
!! GCTGCCTAGTTCTGGCAACA+AGG + chr3_3:29265176-29265195 Msa0448550:intron 55.0%
TCCCTGGTCGTGCTTCACAA+TGG - chr3_3:29265616-29265635 None:intergenic 55.0%
ACAGGGTAATCCTCGGTAGC+AGG + chr3_3:29267276-29267295 Msa0448550:intron 55.0%
!! CAGTCCAGTGGTGGACATCA+AGG - chr3_3:29267307-29267326 None:intergenic 55.0%
CTTGATGTCCACCACTGGAC+TGG + chr3_3:29267305-29267324 Msa0448550:intron 55.0%
! CGCGGTGGTTGATATGAGGG+CGG - chr3_3:29263155-29263174 None:intergenic 60.0%
! GAGGCGCGGTGGTTGATATG+AGG - chr3_3:29263159-29263178 None:intergenic 60.0%
CTGGCTGAGGCATGAGATGG+CGG - chr3_3:29263189-29263208 None:intergenic 60.0%
AACAGCTTAGACTCCGGCGG+AGG - chr3_3:29263228-29263247 None:intergenic 60.0%
! CATAGGTGTCGCGTCGGAGT+GGG - chr3_3:29263637-29263656 None:intergenic 60.0%
! TCATAGGTGTCGCGTCGGAG+TGG - chr3_3:29263638-29263657 None:intergenic 60.0%
TGGACACGGACATGCCGACA+AGG - chr3_3:29263696-29263715 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr3_3:29264207-29264226 Msa0448550:intron 60.0%
GCACGGACAGACAAGGACAC+CGG - chr3_3:29264343-29264362 None:intergenic 60.0%
CAAGGAGTTGCCTGCTACCG+AGG - chr3_3:29267289-29267308 None:intergenic 60.0%
! ATGAGATGGCGGCGACGGTG+AGG - chr3_3:29263178-29263197 None:intergenic 65.0%
! GAGGCATGAGATGGCGGCGA+CGG - chr3_3:29263183-29263202 None:intergenic 65.0%
! CGGTGGACTCAGACTGGCTG+AGG - chr3_3:29263202-29263221 None:intergenic 65.0%
GAGTCCACCGTAACCTCCGC+CGG + chr3_3:29263212-29263231 Msa0448550:five_prime_UTR 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr3_3:29264211-29264230 None:intergenic 65.0%
! TCCCGGTGTCAGACACGCGT+CGG + chr3_3:29264224-29264243 Msa0448550:intron 65.0%
TCCGACGCGTGTCTGACACC+GGG - chr3_3:29264228-29264247 None:intergenic 65.0%
CTCCGACGCGTGTCTGACAC+CGG - chr3_3:29264229-29264248 None:intergenic 65.0%
!! ACAACACGGGCACCGACACG+CGG - chr3_3:29264318-29264337 None:intergenic 65.0%
! GTCGGTGCCCGTGTTGTGTC+CGG + chr3_3:29264321-29264340 Msa0448550:intron 65.0%
GACTCCGGCGGAGGTTACGG+TGG - chr3_3:29263219-29263238 None:intergenic 70.0%
ATGGCGGCGACGGTGAGGCG+CGG - chr3_3:29263173-29263192 None:intergenic 75.0%
!! CGGGCACCGACACGCGGACA+CGG - chr3_3:29264312-29264331 None:intergenic 75.0%
! GCGGCGACGGTGAGGCGCGG+TGG - chr3_3:29263170-29263189 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 29263124 29268179 29263124 ID=Msa0448550;Name=Msa0448550
chr3_3 mRNA 29263124 29268179 29263124 ID=Msa0448550-mRNA-1;Parent=Msa0448550;Name=Msa0448550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=156|1|1|1|0.66|0.5|4|235|89
chr3_3 exon 29263124 29263271 29263124 ID=Msa0448550-mRNA-1:exon:5517;Parent=Msa0448550-mRNA-1
chr3_3 exon 29266434 29266543 29266434 ID=Msa0448550-mRNA-1:exon:5518;Parent=Msa0448550-mRNA-1
chr3_3 exon 29266866 29266973 29266866 ID=Msa0448550-mRNA-1:exon:5519;Parent=Msa0448550-mRNA-1
chr3_3 exon 29267885 29268179 29267885 ID=Msa0448550-mRNA-1:exon:5520;Parent=Msa0448550-mRNA-1
chr3_3 five_prime_UTR 29263124 29263271 29263124 ID=Msa0448550-mRNA-1:five_prime_utr;Parent=Msa0448550-mRNA-1
chr3_3 five_prime_UTR 29266434 29266441 29266434 ID=Msa0448550-mRNA-1:five_prime_utr;Parent=Msa0448550-mRNA-1
chr3_3 CDS 29266442 29266543 29266442 ID=Msa0448550-mRNA-1:cds;Parent=Msa0448550-mRNA-1
chr3_3 CDS 29266866 29266973 29266866 ID=Msa0448550-mRNA-1:cds;Parent=Msa0448550-mRNA-1
chr3_3 CDS 29267885 29267944 29267885 ID=Msa0448550-mRNA-1:cds;Parent=Msa0448550-mRNA-1
chr3_3 three_prime_UTR 29267945 29268179 29267945 ID=Msa0448550-mRNA-1:three_prime_utr;Parent=Msa0448550-mRNA-1
Gene Sequence

>Msa0448550

ATGAAGCATATTGTAAAGATATTGTCACTGGTAATTGCCATCACTGCTTTATGGGTTGGCCTTCTACAAACTTCTATCATTCCTCAAAGTCATACTTGGTTGCTACCAATCTATTTTGTCGTGTCTTTAGGATGTTACGGTCTATTGATGGTTGGTGTTGGTCTGATGAATTTTCCTACTTGTCCTCAAGAAGCCCTGTTGTTGCAAAAGGATATTGTTGAGGCCAAGGAATATTTGAAGCAAAGGGGAGTTGATGTTAGTACCAACTGA

Protein sequence

>Msa0448550

MKHIVKILSLVIAITALWVGLLQTSIIPQSHTWLLPIYFVVSLGCYGLLMVGVGLMNFPTCPQEALLLQKDIVEAKEYLKQRGVDVSTN*