AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497880 MtrunA17_Chr3g0087541 58.333 564 141 7 1 474 582 1141 0.0 540
Msa0497880 MtrunA17_Chr3g0087731 56.481 540 121 9 1 473 373 865 2.77e-173 511
Msa0497880 MtrunA17_Chr3g0085801 59.874 476 108 7 1 402 549 1015 3.48e-167 500
Msa0497880 MtrunA17_Chr3g0086161 52.715 571 158 10 1 474 567 1122 8.14e-164 494
Msa0497880 MtrunA17_Chr3g0086221 52.465 568 166 9 1 474 566 1123 1.53e-157 478
Msa0497880 MtrunA17_Chr3g0085451 54.963 544 141 10 2 452 557 1089 4.68e-153 465
Msa0497880 MtrunA17_Chr3g0087701 50.000 566 176 11 1 473 571 1122 7.28e-142 436
Msa0497880 MtrunA17_Chr3g0084031 47.780 563 196 12 1 474 585 1138 1.87e-135 420
Msa0497880 MtrunA17_Chr3g0085131 48.474 557 195 11 2 473 570 1119 1.18e-134 417
Msa0497880 MtrunA17_Chr3g0084051 46.847 555 205 11 1 473 583 1129 4.10e-130 405
Msa0497880 MtrunA17_Chr3g0085521 45.599 568 205 11 1 473 564 1122 1.36e-126 396
Msa0497880 MtrunA17_Chr3g0085161 46.479 568 200 13 1 473 433 991 4.97e-126 392
Msa0497880 MtrunA17_Chr3g0086091 47.611 565 199 16 1 474 377 935 1.07e-125 390
Msa0497880 MtrunA17_Chr3g0085751 46.372 565 205 11 1 473 567 1125 2.27e-124 390
Msa0497880 MtrunA17_Chr3g0085091 46.667 570 196 14 1 473 575 1133 3.26e-124 390
Msa0497880 MtrunA17_Chr3g0086621 66.561 314 82 3 182 474 810 1121 2.05e-123 388
Msa0497880 MtrunA17_Chr3g0085111 45.326 567 204 13 2 473 571 1126 2.56e-120 380
Msa0497880 MtrunA17_Chr3g0085331 68.667 300 71 3 196 474 938 1235 1.01e-117 375
Msa0497880 MtrunA17_Chr3g0085331 41.695 590 185 23 1 476 593 1137 1.34e-88 295
Msa0497880 MtrunA17_Chr3g0084061 46.820 566 197 15 1 473 580 1134 1.07e-117 373
Msa0497880 MtrunA17_Chr3g0085171 43.881 572 210 11 1 473 559 1118 1.08e-116 370
Msa0497880 MtrunA17_Chr3g0085471 70.922 282 60 3 215 474 982 1263 1.65e-115 369
Msa0497880 MtrunA17_Chr3g0085471 45.816 478 185 19 1 467 583 997 4.91e-78 266
Msa0497880 MtrunA17_Chr3g0087581 64.548 299 83 3 194 471 825 1121 8.82e-113 360
Msa0497880 MtrunA17_Chr3g0087581 35.375 506 226 19 1 464 568 1014 1.70e-53 194
Msa0497880 MtrunA17_Chr3g0085791 68.539 267 63 2 229 474 4 270 1.10e-111 332
Msa0497880 MtrunA17_Chr3g0084081 42.883 555 231 15 1 473 583 1133 2.78e-107 345
Msa0497880 MtrunA17_Chr3g0085651 67.138 283 64 4 201 456 1055 1335 1.36e-104 340
Msa0497880 MtrunA17_Chr3g0085651 35.609 542 225 19 1 468 577 1068 1.15e-62 222
Msa0497880 MtrunA17_Chr3g0085651 31.805 349 154 22 185 488 953 1262 2.03e-13 73.2
Msa0497880 MtrunA17_Chr3g0082791 46.882 433 153 7 1 367 584 1005 3.02e-97 316
Msa0497880 MtrunA17_Chr3g0085711 41.741 563 234 15 1 473 139 697 8.53e-96 305
Msa0497880 MtrunA17_Chr3g0085701 42.945 489 179 11 80 473 451 934 8.10e-93 303
Msa0497880 MtrunA17_Chr3g0085561 55.937 320 69 4 1 252 562 877 4.17e-89 293
Msa0497880 MtrunA17_Chr3g0085561 64.516 62 20 1 196 257 916 975 1.14e-13 73.9
Msa0497880 MtrunA17_Chr3g0086071 67.593 216 67 2 182 396 430 643 7.46e-88 283
Msa0497880 MtrunA17_Chr3g0085501 65.546 238 61 2 215 431 952 1189 7.45e-86 287
Msa0497880 MtrunA17_Chr3g0085501 41.216 592 182 25 1 476 593 1134 8.99e-82 276
Msa0497880 MtrunA17_Chr3g0091011 45.324 417 146 9 1 343 551 959 4.59e-83 277
Msa0497880 MtrunA17_Chr3g0085481 45.187 374 84 7 90 349 1 367 3.05e-78 250
Msa0497880 MtrunA17_Chr3g0086741 52.964 253 105 7 1 252 596 835 2.23e-63 221
Msa0497880 MtrunA17_Chr3g0086181 45.820 323 103 8 1 257 566 882 4.89e-63 221
Msa0497880 MtrunA17_Chr3g0085551 50.588 255 110 6 1 253 459 699 7.11e-61 213
Msa0497880 MtrunA17_Chr3g0085431 44.048 336 88 7 1 285 217 503 2.24e-60 206
Msa0497880 MtrunA17_Chr7g0221481 49.421 259 103 7 1 252 578 815 6.09e-56 200
Msa0497880 MtrunA17_Chr3g0086151 41.916 334 101 9 1 257 566 883 6.32e-54 195
Msa0497880 MtrunA17_Chr3g0085621 62.130 169 41 2 329 474 83 251 1.12e-52 179
Msa0497880 MtrunA17_Chr3g0085621 61.864 118 24 2 368 464 1 118 6.97e-30 118
Msa0497880 MtrunA17_Chr3g0082131 30.378 609 273 20 6 474 594 1191 3.03e-48 179
Msa0497880 MtrunA17_Chr8g0352831 30.546 586 263 21 6 467 603 1168 9.02e-48 178
Msa0497880 MtrunA17_Chr8g0352831 37.333 150 74 4 342 472 1074 1222 8.10e-17 84.0
Msa0497880 MtrunA17_Chr8g0352861 29.042 637 275 23 1 469 591 1218 8.45e-46 172
Msa0497880 MtrunA17_Chr3g0084971 29.027 565 284 15 1 463 571 1120 6.65e-45 169
Msa0497880 MtrunA17_Chr3g0084971 36.691 139 70 2 348 469 1085 1222 5.08e-13 72.0
Msa0497880 MtrunA17_Chr2g0282991 29.597 571 269 19 1 463 576 1121 7.88e-44 166
Msa0497880 MtrunA17_Chr2g0282991 34.752 141 72 3 348 469 1086 1225 6.90e-12 68.6
Msa0497880 MtrunA17_Chr3g0089211 31.855 496 277 19 5 470 632 1096 1.33e-42 162
Msa0497880 MtrunA17_Chr3g0089541 31.299 508 269 19 6 473 589 1056 1.78e-42 162
Msa0497880 MtrunA17_Chr1g0164581 33.133 498 277 15 6 467 570 1047 2.40e-42 162
Msa0497880 MtrunA17_Chr3g0090141 28.287 654 278 21 5 474 585 1231 7.62e-42 160
Msa0497880 MtrunA17_Chr3g0113791 30.556 540 272 17 12 472 576 1091 8.13e-42 160
Msa0497880 MtrunA17_Chr3g0089441 32.298 483 246 18 6 446 92 535 1.21e-41 159
Msa0497880 MtrunA17_Chr3g0089441 26.498 434 253 17 5 388 138 555 4.70e-12 68.6
Msa0497880 MtrunA17_Chr3g0089251 32.008 478 255 17 5 446 614 1057 1.58e-41 159
Msa0497880 MtrunA17_Chr3g0089251 24.590 610 276 25 9 463 665 1245 3.17e-15 79.0
Msa0497880 MtrunA17_Chr3g0090431 34.180 433 215 15 5 386 457 870 4.89e-41 158
Msa0497880 MtrunA17_Chr3g0089421 31.429 490 272 19 6 463 588 1045 7.46e-41 157
Msa0497880 MtrunA17_Chr3g0089781 40.824 267 129 8 5 260 585 833 1.38e-40 156
Msa0497880 MtrunA17_Chr2g0309721 31.621 506 270 21 6 473 583 1050 7.59e-40 154
Msa0497880 MtrunA17_Chr3g0083751 30.849 483 222 14 6 386 589 1061 1.10e-39 154
Msa0497880 MtrunA17_Chr8g0356251 30.862 499 221 14 1 386 604 1091 1.62e-39 153
Msa0497880 MtrunA17_Chr3g0091061 30.059 509 280 16 6 463 587 1070 1.80e-39 153
Msa0497880 MtrunA17_Chr3g0089471 30.452 509 271 16 9 463 637 1116 3.95e-39 152
Msa0497880 MtrunA17_Chr3g0092261 31.102 508 266 19 5 470 629 1094 5.40e-39 152
Msa0497880 MtrunA17_Chr3g0089651 33.472 481 248 18 5 461 589 1021 1.76e-38 150
Msa0497880 MtrunA17_Chr3g0089651 25.918 490 250 21 2 445 632 1054 3.51e-11 66.2
Msa0497880 MtrunA17_Chr3g0083641 30.843 522 271 22 6 464 560 1054 1.84e-38 150
Msa0497880 MtrunA17_Chr3g0091081 32.158 482 240 21 5 464 584 1000 2.52e-38 150
Msa0497880 MtrunA17_Chr3g0083681 30.476 525 267 18 6 464 561 1053 2.74e-38 149
Msa0497880 MtrunA17_Chr3g0083621 29.423 520 280 15 6 464 595 1088 2.75e-38 149
Msa0497880 MtrunA17_Chr3g0089591 30.255 509 272 16 9 463 640 1119 2.84e-38 149
Msa0497880 MtrunA17_Chr3g0089871 31.501 473 281 18 5 463 588 1031 4.48e-38 149
Msa0497880 MtrunA17_Chr3g0089761 31.400 500 272 19 6 470 586 1049 8.77e-38 148
Msa0497880 MtrunA17_Chr3g0083591 31.985 519 262 17 6 464 549 1036 1.02e-37 148
Msa0497880 MtrunA17_Chr1g0164391 33.333 468 240 16 6 442 589 1015 1.29e-37 147
Msa0497880 MtrunA17_Chr3g0082391 44.286 210 102 4 6 214 589 784 1.43e-37 147
Msa0497880 MtrunA17_Chr3g0082311 32.540 504 248 19 6 464 588 1044 1.93e-37 147
Msa0497880 MtrunA17_Chr3g0092241 30.739 501 277 19 5 470 585 1050 1.99e-37 147
Msa0497880 MtrunA17_Chr3g0090691 31.021 519 269 19 6 467 587 1073 2.03e-37 147
Msa0497880 MtrunA17_Chr3g0089811 30.600 500 252 16 6 445 586 1050 2.66e-37 147
Msa0497880 MtrunA17_Chr3g0089961 41.200 250 128 6 6 253 589 821 8.05e-37 145
Msa0497880 MtrunA17_Chr3g0089601 41.200 250 128 6 6 253 584 816 2.12e-36 144
Msa0497880 MtrunA17_Chr3g0089501 41.200 250 128 6 6 253 584 816 2.63e-36 143
Msa0497880 MtrunA17_Chr3g0087841 40.873 252 128 8 5 253 585 818 4.35e-36 143
Msa0497880 MtrunA17_Chr3g0089991 40.239 251 131 6 5 253 589 822 7.64e-36 142
Msa0497880 MtrunA17_Chr4g0025391 43.814 194 99 4 6 198 584 768 7.83e-36 142
Msa0497880 MtrunA17_Chr8g0392511 44.000 200 99 4 6 204 147 334 2.09e-35 135
Msa0497880 MtrunA17_Chr3g0082321 41.593 226 114 5 6 229 534 743 3.33e-35 140
Msa0497880 MtrunA17_Chr3g0113781 31.829 421 212 13 12 397 371 751 5.46e-35 139
Msa0497880 MtrunA17_Chr3g0113781 28.912 294 163 12 7 269 413 691 5.12e-13 71.6
Msa0497880 MtrunA17_Chr3g0080871 30.616 503 268 16 6 463 572 1038 1.06e-34 139
Msa0497880 MtrunA17_Chr1g0169901 31.944 504 249 20 12 467 584 1041 1.26e-34 139
Msa0497880 MtrunA17_Chr8g0348931 31.590 497 262 18 5 463 591 1047 1.68e-34 138
Msa0497880 MtrunA17_Chr1g0147141 31.791 497 228 21 6 411 588 1064 9.78e-34 136
Msa0497880 MtrunA17_Chr6g0484551 40.650 246 127 6 6 249 560 788 9.92e-34 135
Msa0497880 MtrunA17_Chr4g0008461 30.986 497 274 15 6 463 568 1034 2.45e-33 135
Msa0497880 MtrunA17_Chr3g0113481 42.439 205 101 4 5 204 564 756 5.30e-33 133
Msa0497880 MtrunA17_Chr3g0090651 30.238 420 224 12 6 375 587 987 9.52e-33 133
Msa0497880 MtrunA17_Chr3g0082351 29.562 548 292 20 4 501 584 1087 1.07e-32 133
Msa0497880 MtrunA17_Chr5g0415551 36.948 249 139 6 6 253 444 675 2.02e-32 131
Msa0497880 MtrunA17_Chr2g0299151 29.811 530 269 22 6 464 577 1074 5.71e-32 130
Msa0497880 MtrunA17_Chr2g0299151 26.385 379 175 13 194 472 829 1203 6.91e-18 87.4
Msa0497880 MtrunA17_Chr3g0082101 43.564 202 98 5 6 204 546 734 8.87e-32 130
Msa0497880 MtrunA17_Chr5g0430621 32.120 467 261 14 16 472 574 994 9.13e-32 130
Msa0497880 MtrunA17_Chr3g0090401 39.442 251 113 7 5 253 796 1009 9.70e-32 130
Msa0497880 MtrunA17_Chr7g0248531 38.492 252 134 7 5 253 572 805 1.29e-31 129
Msa0497880 MtrunA17_Chr1g0164611 30.648 509 259 17 6 460 598 1066 1.45e-31 129
Msa0497880 MtrunA17_Chr5g0430511 31.878 458 261 15 22 474 582 993 5.36e-31 127
Msa0497880 MtrunA17_Chr3g0083721 31.486 397 229 11 6 386 527 896 1.98e-30 125
Msa0497880 MtrunA17_Chr5g0430641 32.759 464 260 17 22 478 581 999 3.09e-30 125
Msa0497880 MtrunA17_Chr2g0299091 32.828 396 217 16 8 393 569 925 3.43e-30 125
Msa0497880 MtrunA17_Chr2g0299101 42.473 186 97 3 8 193 595 770 5.43e-30 124
Msa0497880 MtrunA17_Chr7g0244231 32.104 461 262 18 22 474 573 990 5.61e-30 124
Msa0497880 MtrunA17_Chr2g0299121 32.576 396 218 16 8 393 595 951 2.29e-29 122
Msa0497880 MtrunA17_Chr2g0316291 29.528 508 287 15 9 469 584 1067 4.84e-29 122
Msa0497880 MtrunA17_Chr3g0082371 37.917 240 129 7 8 245 194 415 4.96e-28 117
Msa0497880 MtrunA17_Chr5g0430141 31.140 456 270 14 22 472 583 999 5.89e-28 118
Msa0497880 MtrunA17_Chr4g0020501 30.529 416 235 13 27 417 479 865 1.10e-27 117
Msa0497880 MtrunA17_Chr1g0168901 37.238 239 127 7 6 243 557 773 1.21e-27 117
Msa0497880 MtrunA17_Chr1g0164631 31.971 416 204 12 6 386 594 965 1.30e-27 117
Msa0497880 MtrunA17_Chr3g0084811 30.166 421 204 10 6 386 735 1105 1.73e-27 117
Msa0497880 MtrunA17_Chr5g0410261 30.769 494 274 18 3 447 578 1052 3.74e-27 116
Msa0497880 MtrunA17_Chr7g0221491 69.620 79 23 1 396 474 4 81 4.29e-27 105
Msa0497880 MtrunA17_Chr5g0429961 30.217 460 245 13 22 474 578 968 1.88e-26 114
Msa0497880 MtrunA17_Chr1g0155991 30.444 450 272 11 22 468 578 989 2.68e-26 113
Msa0497880 MtrunA17_Chr6g0468101 28.707 526 268 18 7 467 524 1007 2.85e-26 113
Msa0497880 MtrunA17_Chr5g0414301 30.753 478 264 20 9 473 130 553 3.51e-26 112
Msa0497880 MtrunA17_Chr5g0430291 30.508 472 274 16 13 474 572 999 3.72e-26 113
Msa0497880 MtrunA17_Chr5g0415471 30.737 475 269 22 9 471 581 1007 3.90e-26 113
Msa0497880 MtrunA17_Chr6g0470011 29.150 494 266 18 3 451 561 1015 1.22e-25 111
Msa0497880 MtrunA17_Chr1g0155321 29.139 453 285 11 22 474 576 992 1.42e-25 111
Msa0497880 MtrunA17_Chr6g0470081 29.600 500 290 21 10 467 566 1045 1.64e-25 111
Msa0497880 MtrunA17_Chr5g0430441 28.986 483 259 13 3 474 562 971 1.74e-25 110
Msa0497880 MtrunA17_Chr5g0414311 29.680 438 260 17 9 439 583 979 2.42e-25 110
Msa0497880 MtrunA17_Chr3g0090371 24.697 660 294 21 5 474 584 1230 2.54e-25 110
Msa0497880 MtrunA17_Chr6g0468021 30.162 494 284 19 7 464 557 1025 3.00e-25 110
Msa0497880 MtrunA17_Chr3g0084041 42.593 162 63 4 86 226 1 153 3.07e-25 103
Msa0497880 MtrunA17_Chr1g0189521 53.398 103 44 2 102 204 5 103 4.24e-25 100
Msa0497880 MtrunA17_Chr5g0430581 29.532 491 246 15 3 474 555 964 4.26e-25 109
Msa0497880 MtrunA17_Chr5g0430721 28.330 473 263 13 22 473 620 1037 5.03e-25 109
Msa0497880 MtrunA17_Chr6g0468121 29.652 489 276 19 16 464 569 1029 1.04e-24 108
Msa0497880 MtrunA17_Chr5g0410351 29.390 541 283 21 3 466 545 1063 1.42e-24 108
Msa0497880 MtrunA17_Chr7g0255751 44.079 152 79 4 1 149 39 187 1.60e-24 101
Msa0497880 MtrunA17_Chr4g0071011 30.043 466 271 17 13 469 63 482 1.89e-24 106
Msa0497880 MtrunA17_Chr5g0446611 38.942 208 103 6 1 198 579 772 2.78e-24 107
Msa0497880 MtrunA17_Chr5g0410301 30.140 428 235 16 3 386 547 954 3.19e-24 107
Msa0497880 MtrunA17_Chr4g0027251 30.372 484 270 16 13 467 575 1020 3.35e-24 107
Msa0497880 MtrunA17_Chr6g0470001 30.769 442 236 18 14 417 174 583 5.87e-24 105
Msa0497880 MtrunA17_Chr5g0410481 29.771 524 269 22 16 466 553 1050 6.27e-24 106
Msa0497880 MtrunA17_Chr6g0468151 27.006 511 284 17 10 466 568 1043 7.75e-24 105
Msa0497880 MtrunA17_Chr5g0430341 30.090 442 232 14 22 443 125 509 8.55e-24 104
Msa0497880 MtrunA17_Chr6g0468201 28.489 523 292 21 13 478 170 667 9.19e-24 105
Msa0497880 MtrunA17_Chr5g0431051 30.383 418 227 15 22 387 583 988 1.11e-23 105
Msa0497880 MtrunA17_Chr8g0351811 29.322 457 268 14 16 464 92 501 2.43e-23 103
Msa0497880 MtrunA17_Chr6g0468451 29.803 406 233 16 16 386 568 956 2.54e-23 104
Msa0497880 MtrunA17_Chr6g0468271 27.547 530 305 16 10 472 559 1076 2.93e-23 104
Msa0497880 MtrunA17_Chr3g0091971 26.204 519 286 15 14 477 529 1005 2.98e-23 104
Msa0497880 MtrunA17_Chr3g0091971 26.370 584 307 22 9 473 564 1143 2.91e-13 72.8
Msa0497880 MtrunA17_Chr5g0429951 30.921 456 265 15 22 470 582 994 3.76e-23 103
Msa0497880 MtrunA17_Chr5g0415481 35.000 260 137 12 9 253 147 389 4.85e-23 102
Msa0497880 MtrunA17_Chr6g0468361 32.414 290 163 10 2 288 167 426 4.94e-23 101
Msa0497880 MtrunA17_Chr6g0467961 39.247 186 98 5 16 198 566 739 5.80e-23 103
Msa0497880 MtrunA17_Chr3g0113741 32.313 294 162 11 212 473 108 396 1.93e-22 99.8
Msa0497880 MtrunA17_Chr1g0189511 70.667 75 18 1 11 85 194 264 2.15e-22 96.7
Msa0497880 MtrunA17_Chr5g0414161 33.871 248 136 8 3 231 55 293 2.16e-22 99.4
Msa0497880 MtrunA17_Chr3g0113801 32.313 294 162 11 212 473 144 432 2.31e-22 99.8
Msa0497880 MtrunA17_Chr3g0085931 27.412 456 278 16 16 464 570 979 5.21e-22 100
Msa0497880 MtrunA17_Chr3g0123111 30.258 466 253 20 2 442 557 975 7.35e-22 99.8
Msa0497880 MtrunA17_Chr2g0282891 45.378 119 60 2 1 118 248 362 1.30e-21 96.3
Msa0497880 MtrunA17_Chr3g0113511 31.507 292 163 10 214 473 110 396 1.67e-21 97.1
Msa0497880 MtrunA17_Chr6g0470021 29.646 452 255 19 7 425 453 874 4.81e-21 97.1
Msa0497880 MtrunA17_Chr3g0113491 32.155 283 165 10 201 472 1 267 1.00e-20 92.4
Msa0497880 MtrunA17_Chr3g0091961 47.748 111 54 3 6 115 264 371 1.75e-20 93.6
Msa0497880 MtrunA17_Chr2g0299141 48.624 109 52 1 8 116 310 414 3.90e-20 92.8
Msa0497880 MtrunA17_Chr5g0414181 27.891 441 268 17 11 442 573 972 6.08e-20 93.6
Msa0497880 MtrunA17_Chr6g0467911 37.500 184 107 5 16 198 572 748 9.08e-20 93.2
Msa0497880 MtrunA17_Chr4g0010251 26.680 491 264 20 16 469 586 1017 9.26e-20 93.2
Msa0497880 MtrunA17_Chr6g0456121 30.162 431 236 15 2 387 550 960 1.21e-19 92.8
Msa0497880 MtrunA17_Chr5g0414201 32.129 249 140 9 3 231 564 803 1.23e-19 92.8
Msa0497880 MtrunA17_Chr5g0413811 33.735 249 140 10 9 253 348 575 1.28e-19 92.4
Msa0497880 MtrunA17_Chr5g0410401 31.271 291 147 10 1 252 424 700 1.80e-19 92.0
Msa0497880 MtrunA17_Chr4g0010261 32.927 246 145 8 1 240 576 807 3.23e-19 91.7
Msa0497880 MtrunA17_Chr5g0417251 33.730 252 141 11 4 249 337 568 3.31e-19 90.9
Msa0497880 MtrunA17_Chr4g0009781 26.200 500 273 18 1 464 576 1015 3.86e-19 91.3
Msa0497880 MtrunA17_Chr6g0456131 30.351 313 171 12 2 278 572 873 6.69e-19 90.5
Msa0497880 MtrunA17_Chr4g0010221 26.337 505 278 20 1 469 574 1020 1.04e-18 90.1
Msa0497880 MtrunA17_Chr5g0410161 32.932 249 142 8 16 252 710 945 1.07e-18 90.1
Msa0497880 MtrunA17_Chr3g0087301 32.759 290 168 14 11 294 562 830 1.51e-18 89.4
Msa0497880 MtrunA17_Chr4g0010201 27.364 497 253 22 16 469 590 1021 1.97e-18 89.0
Msa0497880 MtrunA17_Chr3g0086611 78.182 55 12 0 420 474 1 55 2.88e-18 79.3
Msa0497880 MtrunA17_Chr5g0430951 32.700 263 137 6 3 252 560 795 3.06e-18 88.2
Msa0497880 MtrunA17_Chr3g0089911 51.087 92 41 1 5 96 584 671 4.49e-18 87.4
Msa0497880 MtrunA17_Chr3g0082811 34.896 192 108 8 8 193 571 751 6.66e-18 87.0
Msa0497880 MtrunA17_Chr3g0092291 52.874 87 37 1 5 91 136 218 1.27e-17 84.7
Msa0497880 MtrunA17_Chr3g0082401 25.193 389 181 11 194 473 109 496 4.58e-17 84.0
Msa0497880 MtrunA17_Chr3g0089921 24.065 428 180 12 178 473 86 500 1.68e-15 79.0
Msa0497880 MtrunA17_Chr3g0082881 30.496 282 153 12 8 264 571 834 1.81e-15 79.7
Msa0497880 MtrunA17_Chr3g0082891 30.743 296 161 10 14 285 576 851 5.11e-15 78.2
Msa0497880 MtrunA17_Chr5g0430901 30.748 361 194 15 109 458 546 861 1.51e-14 76.6
Msa0497880 MtrunA17_Chr3g0082871 37.121 132 76 4 8 138 571 696 3.44e-12 68.9
Msa0497880 MtrunA17_Chr3g0089511 32.441 299 154 15 212 473 91 378 1.51e-11 66.2
Msa0497880 MtrunA17_Chr3g0078351 28.472 288 143 11 178 430 113 372 3.05e-11 65.5
Msa0497880 MtrunA17_Chr3g0090661 36.782 87 54 1 387 473 1 86 4.19e-11 60.1
Msa0497880 MtrunA17_Chr8g0392501 29.187 209 123 8 196 383 33 237 5.33e-11 63.2
Msa0497880 MtrunA17_Chr2g0280621 75.000 36 9 0 86 121 1 36 5.60e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497880 AT3G14470.1 30.180 444 243 14 14 418 596 1011 1.10e-36 145
Msa0497880 AT3G14470.2 30.180 444 243 14 14 418 596 1011 1.10e-36 145
Msa0497880 AT3G14460.1 36.255 251 141 8 1 245 577 814 5.76e-27 116
Msa0497880 AT3G14460.1 31.757 296 156 12 213 470 1113 1400 1.11e-16 84.3
Msa0497880 AT1G69550.1 29.352 494 263 25 4 469 819 1254 5.30e-12 69.3

Find 108 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACTTCTCCTTAATTAT+TGG 0.135296 3_4:-32625717 None:intergenic
CTGCGTAAACTGTCCCATTT+TGG 0.168882 3_4:+32625272 Msa0497880:CDS
CAAAGGAAACCCTTCCAATT+TGG 0.174983 3_4:-32624956 None:intergenic
ACAGAGATGTTATAGAATTT+TGG 0.175641 3_4:+32625125 Msa0497880:CDS
CTTCGGAGACTTTCAATAAA+AGG 0.189239 3_4:+32625315 Msa0497880:CDS
CTCTACCCAACTCTCTTTCT+TGG 0.229738 3_4:+32625676 Msa0497880:CDS
TGAAGATTGTCCAATAATTA+AGG 0.258443 3_4:+32625707 Msa0497880:CDS
TCTCTCGAACCAATCAGTTT+TGG 0.274775 3_4:-32625477 None:intergenic
GAGCTTCCATCGTGATAAAT+TGG 0.283977 3_4:+32627037 Msa0497880:CDS
ATAGCAATGTAAATCCAAAA+TGG 0.292309 3_4:-32625286 None:intergenic
AGGCAGAGCCCATTTCAATT+TGG 0.295982 3_4:-32625007 None:intergenic
ATGACGTAAATTGATGAGTT+TGG 0.300845 3_4:-32624316 None:intergenic
AAAGGAAACCCTTCCAATTT+GGG 0.327931 3_4:-32624955 None:intergenic
TGATAAATTGGTTTGGAACT+TGG 0.330566 3_4:+32627049 Msa0497880:CDS
TTTGTTGTTAAAGGGAATTT+TGG 0.335390 3_4:+32627007 Msa0497880:intron
GGCAGAGCCCATTTCAATTT+GGG 0.340486 3_4:-32625006 None:intergenic
GAATTACATTTGATGTTTGA+TGG 0.352013 3_4:+32624579 Msa0497880:CDS
GAAATTGTCCCAAATTGAAA+TGG 0.354048 3_4:+32624998 Msa0497880:CDS
CACATAGCAGTGAACATGTT+TGG 0.368728 3_4:-32627074 None:intergenic
CGAATGCAATGTGTCTGTTT+TGG 0.372103 3_4:+32624632 Msa0497880:CDS
GGAATGGTTGTGTCCCAAAT+TGG 0.382236 3_4:+32624942 Msa0497880:CDS
AAAGAAGATGCCAAAGCATA+TGG 0.384120 3_4:+32624374 Msa0497880:CDS
TTTATTGTGGAAGAGCATAA+TGG 0.385596 3_4:+32624429 Msa0497880:CDS
AACAATTAATATTGAAGGGT+TGG 0.392754 3_4:+32624494 Msa0497880:CDS
TACATTGCTATAATTCTCTT+CGG 0.393835 3_4:+32625298 Msa0497880:CDS
AACTCTTGACACTCTTCATC+TGG 0.399597 3_4:+32625539 Msa0497880:CDS
TACAACATACAAATGGTATC+AGG 0.404716 3_4:-32624231 None:intergenic
TCCAATTGCCCAAAACTGAT+TGG 0.406014 3_4:+32625468 Msa0497880:CDS
TCCATCGTGATAAATTGGTT+TGG 0.410546 3_4:+32627042 Msa0497880:CDS
CAGTCTTCACCAGCTGCATT+TGG 0.410900 3_4:+32625377 Msa0497880:CDS
ACAATTAATATTGAAGGGTT+GGG 0.415906 3_4:+32624495 Msa0497880:CDS
CTTACAATCTCACAATATAA+AGG 0.416767 3_4:+32624687 Msa0497880:CDS
AGTCTCTTCAAGTTGCTGTT+TGG 0.416769 3_4:-32624666 None:intergenic
TATTAATTGTTCCATGAAGA+TGG 0.418272 3_4:-32624482 None:intergenic
CATGGAACAATTAATATTGA+AGG 0.433097 3_4:+32624489 Msa0497880:CDS
TGAGTTGGAGTCGTTTCCTA+TGG 0.433658 3_4:+32625410 Msa0497880:CDS
AATTTGAGCAGATGAACAAT+TGG 0.435562 3_4:+32624917 Msa0497880:CDS
GCGAAACTAAACCATCTTCA+TGG 0.437663 3_4:+32624471 Msa0497880:CDS
CTCTATGATATTATCACCCT+TGG 0.443427 3_4:-32625094 None:intergenic
TTGGGTAGAGCCTCCTTCTC+AGG 0.454625 3_4:-32625663 None:intergenic
TGATGGTACAAGAGAAGAAA+TGG 0.462080 3_4:+32624596 Msa0497880:CDS
TCTTAGTCTTATAGTTAAGA+TGG 0.465754 3_4:-32627122 None:intergenic
GTTTGCCTTCCAACTTGTGT+TGG 0.466411 3_4:+32625436 Msa0497880:CDS
CATTCTTGAAGAGTTGAAGT+TGG 0.466423 3_4:+32625239 Msa0497880:CDS
TAGCAATGTAAATCCAAAAT+GGG 0.467613 3_4:-32625285 None:intergenic
CAAATTATACAACATACAAA+TGG 0.467783 3_4:-32624238 None:intergenic
CTTCCACAATAAAATATGAC+AGG 0.480397 3_4:-32624419 None:intergenic
CAACTTCAACTCTTCAAGAA+TGG 0.485821 3_4:-32625238 None:intergenic
TGGATATGATCTTAAAGAGT+TGG 0.489438 3_4:+32624449 Msa0497880:CDS
AATTAAGGAGAAGTATGAAA+AGG 0.494931 3_4:+32625722 Msa0497880:CDS
ATTTGAGCAGATGAACAATT+GGG 0.495422 3_4:+32624918 Msa0497880:CDS
CTAGTGCCTCTATAATCACT+TGG 0.499629 3_4:-32624348 None:intergenic
GCTGGTGAAGACTGGTGAAC+AGG 0.499652 3_4:-32625368 None:intergenic
GATTAGAGGTTGCAGCAAGT+TGG 0.500588 3_4:+32625059 Msa0497880:CDS
ATAGACATATGAGAGATTTG+AGG 0.504192 3_4:-32625608 None:intergenic
AAATTGTCCCAAATTGAAAT+GGG 0.504299 3_4:+32624999 Msa0497880:CDS
CTTAACTATAAGACTAAGAC+TGG 0.504783 3_4:+32627126 Msa0497880:exon
TCTTGAGTGTTTGCCTGAGA+AGG 0.506585 3_4:+32625650 Msa0497880:CDS
GACAACCAAGAAAGAGAGTT+GGG 0.507219 3_4:-32625681 None:intergenic
ATGGAACAATTAATATTGAA+GGG 0.514252 3_4:+32624490 Msa0497880:CDS
GATTGGTTCGAGAGAGGAGT+GGG 0.515875 3_4:+32625485 Msa0497880:CDS
TAAGGAGAAGTATGAAAAGG+AGG 0.517650 3_4:+32625725 Msa0497880:CDS
GGAGACTTTCAATAAAAGGA+TGG 0.517831 3_4:+32625319 Msa0497880:CDS
GTGTAATTTCAAAGGCAAGC+AGG 0.518165 3_4:-32625346 None:intergenic
GGGTGATAATATCATAGAGC+TGG 0.520862 3_4:+32625098 Msa0497880:CDS
TTTGGACGATTGTGCTGAGT+TGG 0.520996 3_4:+32625395 Msa0497880:CDS
ATAGAAAGCTCTTTAAGCAA+AGG 0.523752 3_4:-32624973 None:intergenic
CACAATCGTCCAAATGCAGC+TGG 0.528328 3_4:-32625386 None:intergenic
TCAGGCAAACACTCAAGACT+AGG 0.530508 3_4:-32625645 None:intergenic
AAGAAGATGCCAAAGCATAT+GGG 0.531018 3_4:+32624375 Msa0497880:CDS
TGAGTGTTTGCCTGAGAAGG+AGG 0.531464 3_4:+32625653 Msa0497880:CDS
AGATGAACAATTGGGAGGAA+TGG 0.533629 3_4:+32624926 Msa0497880:CDS
GAGTTGGAGTCGTTTCCTAT+GGG 0.534604 3_4:+32625411 Msa0497880:CDS
TATTGTAAGCCAACACAAGT+TGG 0.537517 3_4:-32625445 None:intergenic
TTCTAATCTCAGTGTATGAA+AGG 0.540446 3_4:-32624203 None:intergenic
CAAATGCAGCTGGTGAAGAC+TGG 0.545792 3_4:-32625376 None:intergenic
GTTGGAAGCATCAATTTCCA+AGG 0.551385 3_4:+32625077 Msa0497880:CDS
GAGACTTTCAATAAAAGGAT+GGG 0.551587 3_4:+32625320 Msa0497880:CDS
AACAGTTCTTCATTGCATCA+AGG 0.556413 3_4:+32627098 Msa0497880:CDS
TTGCAAACACTCTTGTTGCA+AGG 0.557686 3_4:+32624258 Msa0497880:CDS
TGGTTGTGTCCCAAATTGGA+AGG 0.558111 3_4:+32624946 Msa0497880:CDS
GACATATGAGAGATTTGAGG+TGG 0.561334 3_4:-32625605 None:intergenic
TTGGAGTCGTTTCCTATGGG+AGG 0.564624 3_4:+32625414 Msa0497880:CDS
CGACAACCAAGAAAGAGAGT+TGG 0.567766 3_4:-32625682 None:intergenic
ATATTGTGATCTCTCAGAGC+TGG 0.571746 3_4:+32624140 Msa0497880:CDS
GAACTCCCAAGTGATTATAG+AGG 0.573559 3_4:+32624342 Msa0497880:CDS
TGAAGAGTGTCAAGAGTTGG+TGG 0.574587 3_4:-32625534 None:intergenic
TGTAAGGAAGGAACATGTTG+AGG 0.576248 3_4:-32625027 None:intergenic
GTGAACAGGTGTAATTTCAA+AGG 0.580603 3_4:-32625354 None:intergenic
AGATGAAGAGTGTCAAGAGT+TGG 0.590318 3_4:-32625537 None:intergenic
TCCAAACCAATTTATCACGA+TGG 0.593694 3_4:-32627043 None:intergenic
CAGGCAAACACTCAAGACTA+GGG 0.600222 3_4:-32625644 None:intergenic
GGTTGTGTCCCAAATTGGAA+GGG 0.601178 3_4:+32624947 Msa0497880:CDS
TAGTGCCTCTATAATCACTT+GGG 0.620309 3_4:-32624347 None:intergenic
GTAAGCCAACACAAGTTGGA+AGG 0.621818 3_4:-32625441 None:intergenic
AAAACTGATTGGTTCGAGAG+AGG 0.627248 3_4:+32625479 Msa0497880:CDS
TTGGAAGGCAAACCTCCCAT+AGG 0.630860 3_4:-32625426 None:intergenic
TTGGAAGCATCAATTTCCAA+GGG 0.637452 3_4:+32625078 Msa0497880:CDS
TGAGCAGATGAACAATTGGG+AGG 0.637507 3_4:+32624921 Msa0497880:CDS
TCAGTACACAGAGTTCTCCA+TGG 0.637635 3_4:+32625194 Msa0497880:CDS
GGTACAAGAGAAGAAATGGA+TGG 0.646040 3_4:+32624600 Msa0497880:CDS
GCTAAGAATAATGAACAACA+AGG 0.660424 3_4:+32625575 Msa0497880:CDS
TTCCACAATAAAATATGACA+GGG 0.667719 3_4:-32624418 None:intergenic
TGATTGGTTCGAGAGAGGAG+TGG 0.670977 3_4:+32625484 Msa0497880:CDS
TAATTTCAAAGGCAAGCAGG+AGG 0.677851 3_4:-32625343 None:intergenic
CTAAGAATAATGAACAACAA+GGG 0.693507 3_4:+32625576 Msa0497880:CDS
ATTGGTTCGAGAGAGGAGTG+GGG 0.698443 3_4:+32625486 Msa0497880:CDS
GGAGTGGGGTTTGTTCCCAG+AGG 0.713619 3_4:+32625500 Msa0497880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAATAAGAATATAAAAA+CGG - chr3_4:32625962-32625981 None:intergenic 10.0%
!! TTAAAAAGAATAAAAAAGAT+GGG - chr3_4:32626806-32626825 None:intergenic 10.0%
!! TATAAATAAAATGAAAATCA+CGG - chr3_4:32626946-32626965 None:intergenic 10.0%
!!! TTTGAAAAAGTTATTTCTTT+GGG + chr3_4:32625167-32625186 Msa0497880:CDS 15.0%
!! AAATTAAGAAGAATAACAAA+GGG - chr3_4:32625933-32625952 None:intergenic 15.0%
!! AAAATTAAGAAGAATAACAA+AGG - chr3_4:32625934-32625953 None:intergenic 15.0%
!! GATAATAAGAATATAAAAAC+GGG - chr3_4:32625961-32625980 None:intergenic 15.0%
!! TATTCTAATAATCAAAAGAT+GGG - chr3_4:32626399-32626418 None:intergenic 15.0%
!! ATATTCTAATAATCAAAAGA+TGG - chr3_4:32626400-32626419 None:intergenic 15.0%
!! TTTGATTATTAGAATATCTA+TGG + chr3_4:32626403-32626422 Msa0497880:intron 15.0%
!! GTTAAAAAGAATAAAAAAGA+TGG - chr3_4:32626807-32626826 None:intergenic 15.0%
!! CAAATTATACAACATACAAA+TGG - chr3_4:32624241-32624260 None:intergenic 20.0%
!! ATGGAACAATTAATATTGAA+GGG + chr3_4:32624490-32624509 Msa0497880:CDS 20.0%
!!! AAGAAATAACTTTTTCAAAC+TGG - chr3_4:32625166-32625185 None:intergenic 20.0%
!!! GTTTGAAAAAGTTATTTCTT+TGG + chr3_4:32625166-32625185 Msa0497880:CDS 20.0%
!! CCATAATTCTATCAAATTTA+CGG - chr3_4:32626274-32626293 None:intergenic 20.0%
!!! AAAAGCACATACAAAAATAA+GGG - chr3_4:32626372-32626391 None:intergenic 20.0%
!!! AAAAAGCACATACAAAAATA+AGG - chr3_4:32626373-32626392 None:intergenic 20.0%
!! CAATGGTTTCTAATTAAAAA+TGG - chr3_4:32626456-32626475 None:intergenic 20.0%
!! ATTCTTAATTAGAATACCTA+TGG + chr3_4:32626487-32626506 Msa0497880:intron 20.0%
! TGAGTTTGGAAAAATTTGAA+GGG - chr3_4:32624305-32624324 None:intergenic 25.0%
! ATGAGTTTGGAAAAATTTGA+AGG - chr3_4:32624306-32624325 None:intergenic 25.0%
! TTCCACAATAAAATATGACA+GGG - chr3_4:32624421-32624440 None:intergenic 25.0%
! TATTAATTGTTCCATGAAGA+TGG - chr3_4:32624485-32624504 None:intergenic 25.0%
! CATGGAACAATTAATATTGA+AGG + chr3_4:32624489-32624508 Msa0497880:CDS 25.0%
! AACAATTAATATTGAAGGGT+TGG + chr3_4:32624494-32624513 Msa0497880:CDS 25.0%
! ACAATTAATATTGAAGGGTT+GGG + chr3_4:32624495-32624514 Msa0497880:CDS 25.0%
! GAATTACATTTGATGTTTGA+TGG + chr3_4:32624579-32624598 Msa0497880:CDS 25.0%
! CTTACAATCTCACAATATAA+AGG + chr3_4:32624687-32624706 Msa0497880:CDS 25.0%
! GATAAATGACTTATCCAATT+TGG - chr3_4:32624723-32624742 None:intergenic 25.0%
! CTCAAATTTCAAAACTTCAA+GGG - chr3_4:32624905-32624924 None:intergenic 25.0%
! AAATTGTCCCAAATTGAAAT+GGG + chr3_4:32624999-32625018 Msa0497880:CDS 25.0%
!! ACAGAGATGTTATAGAATTT+TGG + chr3_4:32625125-32625144 Msa0497880:CDS 25.0%
! TAGCAATGTAAATCCAAAAT+GGG - chr3_4:32625288-32625307 None:intergenic 25.0%
! ATAGCAATGTAAATCCAAAA+TGG - chr3_4:32625289-32625308 None:intergenic 25.0%
! TACATTGCTATAATTCTCTT+CGG + chr3_4:32625298-32625317 Msa0497880:CDS 25.0%
! CTAAGAATAATGAACAACAA+GGG + chr3_4:32625576-32625595 Msa0497880:CDS 25.0%
! TGAAGATTGTCCAATAATTA+AGG + chr3_4:32625707-32625726 Msa0497880:CDS 25.0%
! TCATACTTCTCCTTAATTAT+TGG - chr3_4:32625720-32625739 None:intergenic 25.0%
!! AATTAAGGAGAAGTATGAAA+AGG + chr3_4:32625722-32625741 Msa0497880:CDS 25.0%
! TTCAATAAATATACACCTCA+GGG - chr3_4:32625782-32625801 None:intergenic 25.0%
! TATTTGTCTTTGTATGTTGT+TGG + chr3_4:32626041-32626060 Msa0497880:intron 25.0%
! CCGTAAATTTGATAGAATTA+TGG + chr3_4:32626271-32626290 Msa0497880:intron 25.0%
! GGTATTCTAATTAAGAATCT+GGG - chr3_4:32626485-32626504 None:intergenic 25.0%
! AGGTATTCTAATTAAGAATC+TGG - chr3_4:32626486-32626505 None:intergenic 25.0%
! AATTAGAATACCTATGGTTT+AGG + chr3_4:32626493-32626512 Msa0497880:intron 25.0%
! TGTTGATGTAAGTAATTCAT+CGG - chr3_4:32626890-32626909 None:intergenic 25.0%
! ACTTACATCAACAAATTACA+TGG + chr3_4:32626897-32626916 Msa0497880:intron 25.0%
! AAAATGAAAATCACGGTAAA+AGG - chr3_4:32626939-32626958 None:intergenic 25.0%
!!! TTTGTTGTTAAAGGGAATTT+TGG + chr3_4:32627007-32627026 Msa0497880:intron 25.0%
!!! TCTTAGTCTTATAGTTAAGA+TGG - chr3_4:32627125-32627144 None:intergenic 25.0%
TTCTAATCTCAGTGTATGAA+AGG - chr3_4:32624206-32624225 None:intergenic 30.0%
TACAACATACAAATGGTATC+AGG - chr3_4:32624234-32624253 None:intergenic 30.0%
ATGACGTAAATTGATGAGTT+TGG - chr3_4:32624319-32624338 None:intergenic 30.0%
! AACCCTGTCATATTTTATTG+TGG + chr3_4:32624416-32624435 Msa0497880:CDS 30.0%
CTTCCACAATAAAATATGAC+AGG - chr3_4:32624422-32624441 None:intergenic 30.0%
! TTTATTGTGGAAGAGCATAA+TGG + chr3_4:32624429-32624448 Msa0497880:CDS 30.0%
TGGATATGATCTTAAAGAGT+TGG + chr3_4:32624449-32624468 Msa0497880:CDS 30.0%
AAGGTAATAGCTTTCCAAAT+TGG + chr3_4:32624706-32624725 Msa0497880:intron 30.0%
CTTCACCAATGATCTTTATT+CGG - chr3_4:32624843-32624862 None:intergenic 30.0%
AAAACTTCAAGGGACAAAAA+CGG - chr3_4:32624895-32624914 None:intergenic 30.0%
GCTCAAATTTCAAAACTTCA+AGG - chr3_4:32624906-32624925 None:intergenic 30.0%
AATTTGAGCAGATGAACAAT+TGG + chr3_4:32624917-32624936 Msa0497880:CDS 30.0%
ATTTGAGCAGATGAACAATT+GGG + chr3_4:32624918-32624937 Msa0497880:CDS 30.0%
ATAGAAAGCTCTTTAAGCAA+AGG - chr3_4:32624976-32624995 None:intergenic 30.0%
GAAATTGTCCCAAATTGAAA+TGG + chr3_4:32624998-32625017 Msa0497880:CDS 30.0%
! TCTAATCTCCAGTTTTTGTA+AGG - chr3_4:32625046-32625065 None:intergenic 30.0%
TTACAAAAACTGGAGATTAG+AGG + chr3_4:32625045-32625064 Msa0497880:CDS 30.0%
!!! AATAACTTTTTCAAACTGGC+AGG - chr3_4:32625162-32625181 None:intergenic 30.0%
GAGACTTTCAATAAAAGGAT+GGG + chr3_4:32625320-32625339 Msa0497880:CDS 30.0%
GCTAAGAATAATGAACAACA+AGG + chr3_4:32625575-32625594 Msa0497880:CDS 30.0%
ATAGACATATGAGAGATTTG+AGG - chr3_4:32625611-32625630 None:intergenic 30.0%
GTTCAATAAATATACACCTC+AGG - chr3_4:32625783-32625802 None:intergenic 30.0%
! TCTTACATCAAATTTTTCCC+AGG + chr3_4:32625979-32625998 Msa0497880:intron 30.0%
! AAATTTTTCCCAGGTTAAGA+GGG + chr3_4:32625988-32626007 Msa0497880:intron 30.0%
TGCTAAAGAACAAGCTAAAT+TGG + chr3_4:32626115-32626134 Msa0497880:intron 30.0%
TTAATCCAAACATGCACATA+GGG - chr3_4:32626224-32626243 None:intergenic 30.0%
! CTGATTTTGTTGAAGTTCAA+AGG - chr3_4:32626317-32626336 None:intergenic 30.0%
CTTTGAACTTCAACAAAATC+AGG + chr3_4:32626315-32626334 Msa0497880:intron 30.0%
GATTTAGATCCAACATAGTA+CGG + chr3_4:32626610-32626629 Msa0497880:intron 30.0%
ATTTAGATCCAACATAGTAC+GGG + chr3_4:32626611-32626630 Msa0497880:intron 30.0%
AATACAAACCATGAACAAGT+TGG - chr3_4:32626675-32626694 None:intergenic 30.0%
ATACACCATATTCTGACTTT+AGG + chr3_4:32626779-32626798 Msa0497880:intron 30.0%
AATTCCCTTTAACAACAAAG+CGG - chr3_4:32627006-32627025 None:intergenic 30.0%
!! TGATAAATTGGTTTGGAACT+TGG + chr3_4:32627049-32627068 Msa0497880:CDS 30.0%
CTTAACTATAAGACTAAGAC+TGG + chr3_4:32627126-32627145 Msa0497880:exon 30.0%
TAGTGCCTCTATAATCACTT+GGG - chr3_4:32624350-32624369 None:intergenic 35.0%
AAAGAAGATGCCAAAGCATA+TGG + chr3_4:32624374-32624393 Msa0497880:CDS 35.0%
AAGAAGATGCCAAAGCATAT+GGG + chr3_4:32624375-32624394 Msa0497880:CDS 35.0%
! TTTTGCTTTCCCATATGCTT+TGG - chr3_4:32624387-32624406 None:intergenic 35.0%
TGATGGTACAAGAGAAGAAA+TGG + chr3_4:32624596-32624615 Msa0497880:CDS 35.0%
CAGTTCAAGAGATACTAAGT+TGG - chr3_4:32624745-32624764 None:intergenic 35.0%
ATAGAAAGCTTCTTGAGAGA+GGG - chr3_4:32624808-32624827 None:intergenic 35.0%
AATAGAAAGCTTCTTGAGAG+AGG - chr3_4:32624809-32624828 None:intergenic 35.0%
TGTGACCGAATAAAGATCAT+TGG + chr3_4:32624835-32624854 Msa0497880:intron 35.0%
AAAGGAAACCCTTCCAATTT+GGG - chr3_4:32624958-32624977 None:intergenic 35.0%
TGTTCCTTCCTTACAAAAAC+TGG + chr3_4:32625035-32625054 Msa0497880:CDS 35.0%
! ATCTCCAGTTTTTGTAAGGA+AGG - chr3_4:32625042-32625061 None:intergenic 35.0%
!! TTGGAAGCATCAATTTCCAA+GGG + chr3_4:32625078-32625097 Msa0497880:CDS 35.0%
CTCTATGATATTATCACCCT+TGG - chr3_4:32625097-32625116 None:intergenic 35.0%
! GTTGACTAAATTTTGCTCCA+TGG - chr3_4:32625214-32625233 None:intergenic 35.0%
CAACTTCAACTCTTCAAGAA+TGG - chr3_4:32625241-32625260 None:intergenic 35.0%
CATTCTTGAAGAGTTGAAGT+TGG + chr3_4:32625239-32625258 Msa0497880:CDS 35.0%
! GAGTTGAAGTTGGATTTTAC+AGG + chr3_4:32625249-32625268 Msa0497880:CDS 35.0%
CTTCGGAGACTTTCAATAAA+AGG + chr3_4:32625315-32625334 Msa0497880:CDS 35.0%
GGAGACTTTCAATAAAAGGA+TGG + chr3_4:32625319-32625338 Msa0497880:CDS 35.0%
GTGAACAGGTGTAATTTCAA+AGG - chr3_4:32625357-32625376 None:intergenic 35.0%
TATTGTAAGCCAACACAAGT+TGG - chr3_4:32625448-32625467 None:intergenic 35.0%
! TAAGGAGAAGTATGAAAAGG+AGG + chr3_4:32625725-32625744 Msa0497880:CDS 35.0%
AAGAGATTTCATGCAAACGT+AGG - chr3_4:32625853-32625872 None:intergenic 35.0%
TTTGTAACTGTTCGTTGAGA+AGG + chr3_4:32625871-32625890 Msa0497880:intron 35.0%
! CAAATTTTTCCCAGGTTAAG+AGG + chr3_4:32625987-32626006 Msa0497880:intron 35.0%
TGCTCATATATTTACCTCGA+TGG + chr3_4:32626157-32626176 Msa0497880:intron 35.0%
GGAGTAAAATTTACCTGAAG+AGG - chr3_4:32626203-32626222 None:intergenic 35.0%
GTTAATCCAAACATGCACAT+AGG - chr3_4:32626225-32626244 None:intergenic 35.0%
TCCAAACACAGACAATAACT+CGG - chr3_4:32626247-32626266 None:intergenic 35.0%
! AAGAATCTGGGATCAAACAA+TGG - chr3_4:32626473-32626492 None:intergenic 35.0%
ACCTATGGTTTAGGTAGATA+AGG + chr3_4:32626502-32626521 Msa0497880:intron 35.0%
CATTCGCAGCAAAGAAATTT+CGG + chr3_4:32626564-32626583 Msa0497880:intron 35.0%
! AAACCATGAACAAGTTGGAA+TGG - chr3_4:32626670-32626689 None:intergenic 35.0%
CATCAACAAATTACATGGTG+AGG + chr3_4:32626902-32626921 Msa0497880:intron 35.0%
! GTTGTTAAAGGGAATTTTGG+TGG + chr3_4:32627010-32627029 Msa0497880:intron 35.0%
!! TTAAAGGGAATTTTGGTGGA+TGG + chr3_4:32627014-32627033 Msa0497880:intron 35.0%
!! TAAAGGGAATTTTGGTGGAT+GGG + chr3_4:32627015-32627034 Msa0497880:intron 35.0%
TCCATCGTGATAAATTGGTT+TGG + chr3_4:32627042-32627061 Msa0497880:CDS 35.0%
TCCAAACCAATTTATCACGA+TGG - chr3_4:32627046-32627065 None:intergenic 35.0%
AACAGTTCTTCATTGCATCA+AGG + chr3_4:32627098-32627117 Msa0497880:CDS 35.0%
ATATTGTGATCTCTCAGAGC+TGG + chr3_4:32624140-32624159 Msa0497880:CDS 40.0%
TTGCAAACACTCTTGTTGCA+AGG + chr3_4:32624258-32624277 Msa0497880:CDS 40.0%
GAACTCCCAAGTGATTATAG+AGG + chr3_4:32624342-32624361 Msa0497880:CDS 40.0%
CTAGTGCCTCTATAATCACT+TGG - chr3_4:32624351-32624370 None:intergenic 40.0%
GCGAAACTAAACCATCTTCA+TGG + chr3_4:32624471-32624490 Msa0497880:CDS 40.0%
GGTACAAGAGAAGAAATGGA+TGG + chr3_4:32624600-32624619 Msa0497880:CDS 40.0%
! CGAATGCAATGTGTCTGTTT+TGG + chr3_4:32624632-32624651 Msa0497880:CDS 40.0%
!! ATGCAATGTGTCTGTTTTGG+AGG + chr3_4:32624635-32624654 Msa0497880:CDS 40.0%
!! AGTCTCTTCAAGTTGCTGTT+TGG - chr3_4:32624669-32624688 None:intergenic 40.0%
! ATTATGTTCCGATTTGCCAG+AGG + chr3_4:32624776-32624795 Msa0497880:intron 40.0%
TAGAAAGCTTCTTGAGAGAG+GGG - chr3_4:32624807-32624826 None:intergenic 40.0%
! ATCATTGGTGAAGCGTTTCA+TGG + chr3_4:32624850-32624869 Msa0497880:intron 40.0%
AGATGAACAATTGGGAGGAA+TGG + chr3_4:32624926-32624945 Msa0497880:CDS 40.0%
CAAAGGAAACCCTTCCAATT+TGG - chr3_4:32624959-32624978 None:intergenic 40.0%
TGTAAGGAAGGAACATGTTG+AGG - chr3_4:32625030-32625049 None:intergenic 40.0%
!! GTTGGAAGCATCAATTTCCA+AGG + chr3_4:32625077-32625096 Msa0497880:CDS 40.0%
GGGTGATAATATCATAGAGC+TGG + chr3_4:32625098-32625117 Msa0497880:CDS 40.0%
TAATTTCAAAGGCAAGCAGG+AGG - chr3_4:32625346-32625365 None:intergenic 40.0%
GTGTAATTTCAAAGGCAAGC+AGG - chr3_4:32625349-32625368 None:intergenic 40.0%
TCCAATTGCCCAAAACTGAT+TGG + chr3_4:32625468-32625487 Msa0497880:CDS 40.0%
!!! ACCAATCAGTTTTGGGCAAT+TGG - chr3_4:32625472-32625491 None:intergenic 40.0%
! CTCTCGAACCAATCAGTTTT+GGG - chr3_4:32625479-32625498 None:intergenic 40.0%
! TCTCTCGAACCAATCAGTTT+TGG - chr3_4:32625480-32625499 None:intergenic 40.0%
!! AAAACTGATTGGTTCGAGAG+AGG + chr3_4:32625479-32625498 Msa0497880:CDS 40.0%
!! AGATGAAGAGTGTCAAGAGT+TGG - chr3_4:32625540-32625559 None:intergenic 40.0%
AACTCTTGACACTCTTCATC+TGG + chr3_4:32625539-32625558 Msa0497880:CDS 40.0%
GACATATGAGAGATTTGAGG+TGG - chr3_4:32625608-32625627 None:intergenic 40.0%
GACAACCAAGAAAGAGAGTT+GGG - chr3_4:32625684-32625703 None:intergenic 40.0%
! GAGAAGTATGAAAAGGAGGT+AGG + chr3_4:32625729-32625748 Msa0497880:intron 40.0%
TACAATTAGTCACATCCCTG+AGG + chr3_4:32625764-32625783 Msa0497880:intron 40.0%
TTGTTGGACAGTTTGAGTGA+GGG + chr3_4:32626057-32626076 Msa0497880:intron 40.0%
AGTTTGAGTGAGGGTAGTTT+AGG + chr3_4:32626066-32626085 Msa0497880:intron 40.0%
GAACAAGCTAAATTGGAGTG+TGG + chr3_4:32626122-32626141 Msa0497880:intron 40.0%
TTACTCCCTATGTGCATGTT+TGG + chr3_4:32626216-32626235 Msa0497880:intron 40.0%
ACCGAGTTATTGTCTGTGTT+TGG + chr3_4:32626243-32626262 Msa0497880:intron 40.0%
GCCTTATCTACCTAAACCAT+AGG - chr3_4:32626506-32626525 None:intergenic 40.0%
TGCTGCAAAAAAGAAGTAGC+AGG + chr3_4:32626534-32626553 Msa0497880:intron 40.0%
! CATGAACAAGTTGGAATGGA+TGG - chr3_4:32626666-32626685 None:intergenic 40.0%
! CATCCATTCCAACTTGTTCA+TGG + chr3_4:32626664-32626683 Msa0497880:intron 40.0%
TGGGACCTAAAGTCAGAATA+TGG - chr3_4:32626787-32626806 None:intergenic 40.0%
! TTTTCTTCTTGTGTCTTCCC+AGG + chr3_4:32626840-32626859 Msa0497880:intron 40.0%
TCTCAAGTCTCATGTTTCCT+GGG - chr3_4:32626860-32626879 None:intergenic 40.0%
TTCTCAAGTCTCATGTTTCC+TGG - chr3_4:32626861-32626880 None:intergenic 40.0%
!! ACATGCCGCTTTGTTGTTAA+AGG + chr3_4:32626998-32627017 Msa0497880:intron 40.0%
!! CATGCCGCTTTGTTGTTAAA+GGG + chr3_4:32626999-32627018 Msa0497880:intron 40.0%
GAGCTTCCATCGTGATAAAT+TGG + chr3_4:32627037-32627056 Msa0497880:CDS 40.0%
CACATAGCAGTGAACATGTT+TGG - chr3_4:32627077-32627096 None:intergenic 40.0%
TCTCTTGAACTGCAAGACTG+TGG + chr3_4:32624753-32624772 Msa0497880:intron 45.0%
TGAGCAGATGAACAATTGGG+AGG + chr3_4:32624921-32624940 Msa0497880:CDS 45.0%
GGAATGGTTGTGTCCCAAAT+TGG + chr3_4:32624942-32624961 Msa0497880:CDS 45.0%
TGGTTGTGTCCCAAATTGGA+AGG + chr3_4:32624946-32624965 Msa0497880:CDS 45.0%
GGTTGTGTCCCAAATTGGAA+GGG + chr3_4:32624947-32624966 Msa0497880:CDS 45.0%
GGCAGAGCCCATTTCAATTT+GGG - chr3_4:32625009-32625028 None:intergenic 45.0%
AGGCAGAGCCCATTTCAATT+TGG - chr3_4:32625010-32625029 None:intergenic 45.0%
GATTAGAGGTTGCAGCAAGT+TGG + chr3_4:32625059-32625078 Msa0497880:CDS 45.0%
TCAGTACACAGAGTTCTCCA+TGG + chr3_4:32625194-32625213 Msa0497880:CDS 45.0%
! CTGCGTAAACTGTCCCATTT+TGG + chr3_4:32625272-32625291 Msa0497880:CDS 45.0%
TTTGGACGATTGTGCTGAGT+TGG + chr3_4:32625395-32625414 Msa0497880:CDS 45.0%
! TGAGTTGGAGTCGTTTCCTA+TGG + chr3_4:32625410-32625429 Msa0497880:CDS 45.0%
GAGTTGGAGTCGTTTCCTAT+GGG + chr3_4:32625411-32625430 Msa0497880:CDS 45.0%
GTTTGCCTTCCAACTTGTGT+TGG + chr3_4:32625436-32625455 Msa0497880:CDS 45.0%
! GTAAGCCAACACAAGTTGGA+AGG - chr3_4:32625444-32625463 None:intergenic 45.0%
!! TGAAGAGTGTCAAGAGTTGG+TGG - chr3_4:32625537-32625556 None:intergenic 45.0%
CAGGCAAACACTCAAGACTA+GGG - chr3_4:32625647-32625666 None:intergenic 45.0%
TCAGGCAAACACTCAAGACT+AGG - chr3_4:32625648-32625667 None:intergenic 45.0%
TCTTGAGTGTTTGCCTGAGA+AGG + chr3_4:32625650-32625669 Msa0497880:CDS 45.0%
CTCTACCCAACTCTCTTTCT+TGG + chr3_4:32625676-32625695 Msa0497880:CDS 45.0%
CGACAACCAAGAAAGAGAGT+TGG - chr3_4:32625685-32625704 None:intergenic 45.0%
ATTGGACTGTGCTTGTGTGT+GGG - chr3_4:32625823-32625842 None:intergenic 45.0%
AATTGGACTGTGCTTGTGTG+TGG - chr3_4:32625824-32625843 None:intergenic 45.0%
ACACAAGCACAGTCCAATTG+TGG + chr3_4:32625825-32625844 Msa0497880:intron 45.0%
CACAAGCACAGTCCAATTGT+GGG + chr3_4:32625826-32625845 Msa0497880:intron 45.0%
GTTGTTGGACAGTTTGAGTG+AGG + chr3_4:32626056-32626075 Msa0497880:intron 45.0%
GAAGAGGAAGAAGATGTGCT+GGG - chr3_4:32626187-32626206 None:intergenic 45.0%
TGAAGAGGAAGAAGATGTGC+TGG - chr3_4:32626188-32626207 None:intergenic 45.0%
AGCACATCTTCTTCCTCTTC+AGG + chr3_4:32626187-32626206 Msa0497880:intron 45.0%
ATCCAACATAGTACGGGCAA+GGG + chr3_4:32626617-32626636 Msa0497880:intron 45.0%
TACATGGTGAGGATGTCATG+TGG + chr3_4:32626913-32626932 Msa0497880:intron 45.0%
CAAATGCAGCTGGTGAAGAC+TGG - chr3_4:32625379-32625398 None:intergenic 50.0%
CAGTCTTCACCAGCTGCATT+TGG + chr3_4:32625377-32625396 Msa0497880:CDS 50.0%
CACAATCGTCCAAATGCAGC+TGG - chr3_4:32625389-32625408 None:intergenic 50.0%
TTGGAGTCGTTTCCTATGGG+AGG + chr3_4:32625414-32625433 Msa0497880:CDS 50.0%
TTGGAAGGCAAACCTCCCAT+AGG - chr3_4:32625429-32625448 None:intergenic 50.0%
!! TGATTGGTTCGAGAGAGGAG+TGG + chr3_4:32625484-32625503 Msa0497880:CDS 50.0%
!! GATTGGTTCGAGAGAGGAGT+GGG + chr3_4:32625485-32625504 Msa0497880:CDS 50.0%
!! ATTGGTTCGAGAGAGGAGTG+GGG + chr3_4:32625486-32625505 Msa0497880:CDS 50.0%
! GTGGCAGCAGATTTTCCTCT+GGG - chr3_4:32625518-32625537 None:intergenic 50.0%
TGAGTGTTTGCCTGAGAAGG+AGG + chr3_4:32625653-32625672 Msa0497880:CDS 50.0%
! AAAAGGAGGTAGGAGAGCGT+TGG + chr3_4:32625739-32625758 Msa0497880:intron 50.0%
GCAAACGTAGGACCCACAAT+TGG - chr3_4:32625841-32625860 None:intergenic 50.0%
CGCAGAATCCCTCTTAACCT+GGG - chr3_4:32625999-32626018 None:intergenic 50.0%
ACGCAGAATCCCTCTTAACC+TGG - chr3_4:32626000-32626019 None:intergenic 50.0%
GATCCAACATAGTACGGGCA+AGG + chr3_4:32626616-32626635 Msa0497880:intron 50.0%
TTCCCTTGCCCGTACTATGT+TGG - chr3_4:32626622-32626641 None:intergenic 50.0%
GCTGGTGAAGACTGGTGAAC+AGG - chr3_4:32625371-32625390 None:intergenic 55.0%
! GGTGGCAGCAGATTTTCCTC+TGG - chr3_4:32625519-32625538 None:intergenic 55.0%
TTGGGTAGAGCCTCCTTCTC+AGG - chr3_4:32625666-32625685 None:intergenic 55.0%
ATGTGCTGGGAACTCCATCG+AGG - chr3_4:32626174-32626193 None:intergenic 55.0%
GGGAGCTGCCTCTGGCAAAT+CGG - chr3_4:32624787-32624806 None:intergenic 60.0%
! GGAGTGGGGTTTGTTCCCAG+AGG + chr3_4:32625500-32625519 Msa0497880:CDS 60.0%
TGAGAGAGGGGAGCTGCCTC+TGG - chr3_4:32624795-32624814 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 32624126 32627153 32624126 ID=Msa0497880;Name=Msa0497880
chr3_4 mRNA 32624126 32627153 32624126 ID=Msa0497880-mRNA-1;Parent=Msa0497880;Name=Msa0497880-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0.33|1|0|0.33|3|23|509
chr3_4 exon 32624126 32624708 32624126 ID=Msa0497880-mRNA-1:exon:7060;Parent=Msa0497880-mRNA-1
chr3_4 exon 32624911 32625746 32624911 ID=Msa0497880-mRNA-1:exon:7061;Parent=Msa0497880-mRNA-1
chr3_4 exon 32627020 32627153 32627020 ID=Msa0497880-mRNA-1:exon:7062;Parent=Msa0497880-mRNA-1
chr3_4 CDS 32624126 32624708 32624126 ID=Msa0497880-mRNA-1:cds;Parent=Msa0497880-mRNA-1
chr3_4 CDS 32624911 32625746 32624911 ID=Msa0497880-mRNA-1:cds;Parent=Msa0497880-mRNA-1
chr3_4 CDS 32627020 32627130 32627020 ID=Msa0497880-mRNA-1:cds;Parent=Msa0497880-mRNA-1
chr3_4 three_prime_UTR 32627131 32627153 32627131 ID=Msa0497880-mRNA-1:three_prime_utr;Parent=Msa0497880-mRNA-1
Gene Sequence

>Msa0497880

ATGTTATCATTTAGATATTGTGATCTCTCAGAGCTGGTCGATGAGATAAGCAATTTAAAACTTTTGCGTTATCTAGACCTTTCATACACTGAGATTAGAAGCTTACCTGATACCATTTGTATGTTGTATAATTTGCAAACACTCTTGTTGCAAGGCTGTGCTGAATTGATAGAGCTCCCTTCAAATTTTTCCAAACTCATCAATTTACGTCATCTTGAACTCCCAAGTGATTATAGAGGCACTAGAATAAAGAAGATGCCAAAGCATATGGGAAAGCAAAACAATCTTCAAACCCTGTCATATTTTATTGTGGAAGAGCATAATGGATATGATCTTAAAGAGTTGGCGAAACTAAACCATCTTCATGGAACAATTAATATTGAAGGGTTGGGTAATGTTCTTAATATTGCAGATGCTGCTACAATATATTTGAAAGATAAGAAGTATTTAGAAGAATTACATTTGATGTTTGATGGTACAAGAGAAGAAATGGATGGCTCAATAGTCGAATGCAATGTGTCTGTTTTGGAGGCTCTTCAACCAAACAGCAACTTGAAGAGACTTACAATCTCACAATATAAAGTTTTGAAATTTGAGCAGATGAACAATTGGGAGGAATGGTTGTGTCCCAAATTGGAAGGGTTTCCTTTGCTTAAAGAGCTTTCTATAAGAAATTGTCCCAAATTGAAATGGGCTCTGCCTCAACATGTTCCTTCCTTACAAAAACTGGAGATTAGAGGTTGCAGCAAGTTGGAAGCATCAATTTCCAAGGGTGATAATATCATAGAGCTGGAGATACAGAGATGTTATAGAATTTTGGTAAATGAATTGCCTGCCAGTTTGAAAAAGTTATTTCTTTGGGAAAATCAGTACACAGAGTTCTCCATGGAGCAAAATTTAGTCAACAATACCATTCTTGAAGAGTTGAAGTTGGATTTTACAGGCTGCGTAAACTGTCCCATTTTGGATTTACATTGCTATAATTCTCTTCGGAGACTTTCAATAAAAGGATGGGCCTCCTGCTTGCCTTTGAAATTACACCTGTTCACCAGTCTTCACCAGCTGCATTTGGACGATTGTGCTGAGTTGGAGTCGTTTCCTATGGGAGGTTTGCCTTCCAACTTGTGTTGGCTTACAATATCCAATTGCCCAAAACTGATTGGTTCGAGAGAGGAGTGGGGTTTGTTCCCAGAGGAAAATCTGCTGCCACCAACTCTTGACACTCTTCATCTGGAAAAATGTTCAAAGCTAAGAATAATGAACAACAAGGGTTTTCTCCACCTCAAATCTCTCATATGTCTATCTATTTACAACTGCCCTAGTCTTGAGTGTTTGCCTGAGAAGGAGGCTCTACCCAACTCTCTTTCTTGGTTGTCGATTGAAGATTGTCCAATAATTAAGGAGAAGTATGAAAAGGAGGGAATTTTGGTGGATGGGAGCTTCCATCGTGATAAATTGGTTTGGAACTTGGATCCAAACATGTTCACTGCTATGTGCAACAGTTCTTCATTGCATCAAGGACCATCTTAA
Protein sequence

>Msa0497880

MLSFRYCDLSELVDEISNLKLLRYLDLSYTEIRSLPDTICMLYNLQTLLLQGCAELIELPSNFSKLINLRHLELPSDYRGTRIKKMPKHMGKQNNLQTLSYFIVEEHNGYDLKELAKLNHLHGTINIEGLGNVLNIADAATIYLKDKKYLEELHLMFDGTREEMDGSIVECNVSVLEALQPNSNLKRLTISQYKVLKFEQMNNWEEWLCPKLEGFPLLKELSIRNCPKLKWALPQHVPSLQKLEIRGCSKLEASISKGDNIIELEIQRCYRILVNELPASLKKLFLWENQYTEFSMEQNLVNNTILEELKLDFTGCVNCPILDLHCYNSLRRLSIKGWASCLPLKLHLFTSLHQLHLDDCAELESFPMGGLPSNLCWLTISNCPKLIGSREEWGLFPEENLLPPTLDTLHLEKCSKLRIMNNKGFLHLKSLICLSIYNCPSLECLPEKEALPNSLSWLSIEDCPIIKEKYEKEGILVDGSFHRDKLVWNLDPNMFTAMCNSSSLHQGPS*