Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498260 | XP_013459620.1 | 96.785 | 311 | 10 | 0 | 80 | 390 | 1 | 311 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498260 | sp|Q9FNN2|WDR26_ARATH | 44.444 | 297 | 148 | 6 | 80 | 362 | 1 | 294 | 1.56e-68 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498260 | A0A072UW48 | 96.785 | 311 | 10 | 0 | 80 | 390 | 1 | 311 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0450930 | Msa0498260 | 0.911702 | 4.508278e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498260 | MtrunA17_Chr3g0095471 | 96.785 | 311 | 10 | 0 | 80 | 390 | 1 | 311 | 0.0 | 615 |
| Msa0498260 | MtrunA17_Chr3g0095501 | 66.090 | 289 | 89 | 3 | 80 | 360 | 1 | 288 | 3.38e-112 | 340 |
| Msa0498260 | MtrunA17_Chr5g0442391 | 57.785 | 289 | 107 | 5 | 80 | 360 | 1 | 282 | 5.92e-90 | 282 |
| Msa0498260 | MtrunA17_Chr1g0183051 | 32.212 | 208 | 132 | 3 | 125 | 331 | 7 | 206 | 7.50e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498260 | AT5G08560.1 | 44.444 | 297 | 148 | 6 | 80 | 362 | 1 | 294 | 1.59e-69 | 229 |
| Msa0498260 | AT5G08560.2 | 44.444 | 297 | 148 | 6 | 80 | 362 | 1 | 294 | 1.59e-69 | 229 |
| Msa0498260 | AT5G08560.3 | 44.444 | 297 | 148 | 6 | 80 | 362 | 1 | 294 | 1.59e-69 | 229 |
| Msa0498260 | AT5G43920.1 | 33.193 | 238 | 155 | 4 | 125 | 360 | 7 | 242 | 2.08e-26 | 110 |
Find 89 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGCCAAGGTGGTTCTTC+CGG | 0.265995 | 3_4:+34039651 | Msa0498260:CDS |
| CTGGCCAAGGTGGTTCTTCC+GGG | 0.287686 | 3_4:+34039652 | Msa0498260:CDS |
| ATTTGCATCTAGGCCGTCTT+TGG | 0.291389 | 3_4:+34039079 | Msa0498260:intron |
| AACTTGTCCAGAGCTGATTT+TGG | 0.291966 | 3_4:+34039930 | Msa0498260:CDS |
| TATTGTTGGTTATTATTTCA+TGG | 0.307034 | 3_4:+34039110 | Msa0498260:CDS |
| GAGGAGGAGGGGTTCGAAAT+AGG | 0.313413 | 3_4:-34040037 | None:intergenic |
| ACCTAATAGTTCATCTTCTA+TGG | 0.313662 | 3_4:+34039179 | Msa0498260:CDS |
| GAAGTATAAGCTTGATTAGT+AGG | 0.346896 | 3_4:-34039879 | None:intergenic |
| GTCGTCCCCTTCGGCTGATC+GGG | 0.347053 | 3_4:-34039241 | None:intergenic |
| CTGTTTATGCAGCAAGTACT+TGG | 0.358690 | 3_4:+34039408 | Msa0498260:CDS |
| AGCAAGTACTTGGCGGTGAT+TGG | 0.361938 | 3_4:+34039418 | Msa0498260:CDS |
| CTAGCCACATTGAAACAAAT+TGG | 0.364435 | 3_4:+34039450 | Msa0498260:CDS |
| CCAATCGCCTTCTTCTGCTT+TGG | 0.374720 | 3_4:+34037584 | Msa0498260:CDS |
| CCGATGAGTGATCGGTGATA+TGG | 0.388214 | 3_4:-34037656 | None:intergenic |
| TCTTCTATGGAGCACGTTGT+AGG | 0.395510 | 3_4:+34039192 | Msa0498260:CDS |
| CGTCGTCCCCTTCGGCTGAT+CGG | 0.398819 | 3_4:-34039242 | None:intergenic |
| GACGAAGTTGTTGGCACAAA+AGG | 0.398912 | 3_4:+34039261 | Msa0498260:CDS |
| TGAGCTTATTGATGGGGATA+AGG | 0.407133 | 3_4:+34039533 | Msa0498260:CDS |
| ACCGATCACTCATCGGAATC+CGG | 0.415091 | 3_4:+34037663 | Msa0498260:CDS |
| ATTGTTGGTTATTATTTCAT+GGG | 0.422226 | 3_4:+34039111 | Msa0498260:CDS |
| CAGAGAAAGAAAAGAGAAAT+CGG | 0.429177 | 3_4:+34037615 | Msa0498260:CDS |
| GAAAAGAGAAATCGGTTTGA+GGG | 0.431198 | 3_4:+34037623 | Msa0498260:CDS |
| TCCATAGAAGATGAACTATT+AGG | 0.439662 | 3_4:-34039180 | None:intergenic |
| TTTAAAATCTATTGAGGAGG+AGG | 0.444056 | 3_4:-34040050 | None:intergenic |
| TGCATCTAGGCCGTCTTTGG+AGG | 0.447235 | 3_4:+34039082 | Msa0498260:intron |
| TCCTGCTTCATGTCACCCTC+TGG | 0.448042 | 3_4:+34039633 | Msa0498260:CDS |
| AGAAAAGAGAAATCGGTTTG+AGG | 0.450404 | 3_4:+34037622 | Msa0498260:CDS |
| AAATCTTCCAAAATCAGCTC+TGG | 0.468825 | 3_4:-34039937 | None:intergenic |
| AGGCTCAACAAGTGACTTGA+TGG | 0.473288 | 3_4:+34039212 | Msa0498260:CDS |
| ACCAAGAGAATACATCGCTT+TGG | 0.476220 | 3_4:-34039319 | None:intergenic |
| TTAAAATCTATTGAGGAGGA+GGG | 0.486898 | 3_4:-34040049 | None:intergenic |
| TTCATGTCACCCTCTGGCCA+AGG | 0.491036 | 3_4:+34039639 | Msa0498260:CDS |
| AACAACTTCGTCGTCCCCTT+CGG | 0.491520 | 3_4:-34039250 | None:intergenic |
| ACATAATTTAAAATCTATTG+AGG | 0.496725 | 3_4:-34040056 | None:intergenic |
| GCAAGTACTTGGCGGTGATT+GGG | 0.500806 | 3_4:+34039419 | Msa0498260:CDS |
| AGAAGATGAAAGCATCGTTA+AGG | 0.501049 | 3_4:+34039476 | Msa0498260:CDS |
| ACCAAAGCGATGTATTCTCT+TGG | 0.502163 | 3_4:+34039318 | Msa0498260:CDS |
| GAACACCTAGAGGAGGAGTC+TGG | 0.502621 | 3_4:+34039357 | Msa0498260:CDS |
| TTCCTTGTGTCGCAACGCGT+TGG | 0.514667 | 3_4:+34039809 | Msa0498260:CDS |
| ATTTGTCAGTACTGCTGAAA+GGG | 0.515762 | 3_4:+34039956 | Msa0498260:CDS |
| TGTTTCTGATGATAACGAAT+CGG | 0.517284 | 3_4:+34039905 | Msa0498260:CDS |
| GCCAGAGGGTGACATGAAGC+AGG | 0.519258 | 3_4:-34039634 | None:intergenic |
| CAGTTCCGTGTTGCAGTGAG+TGG | 0.523436 | 3_4:+34038359 | Msa0498260:intron |
| GTTGGTTATTATTTCATGGG+AGG | 0.523880 | 3_4:+34039114 | Msa0498260:CDS |
| ATCCAACGCGTTGCGACACA+AGG | 0.527126 | 3_4:-34039811 | None:intergenic |
| TGCCCTTACAAAATCTCGCC+CGG | 0.534345 | 3_4:-34039670 | None:intergenic |
| TCGTCATGTTCAGATGACTT+TGG | 0.542727 | 3_4:+34039843 | Msa0498260:CDS |
| CCAAAGCAGAAGAAGGCGAT+TGG | 0.543283 | 3_4:-34037584 | None:intergenic |
| GAAGGGGACGACGAAGTTGT+TGG | 0.544222 | 3_4:+34039252 | Msa0498260:CDS |
| ACGAAGTTGTTGGCACAAAA+GGG | 0.550371 | 3_4:+34039262 | Msa0498260:CDS |
| TCAGGTATCATTACAGTCGA+GGG | 0.553135 | 3_4:-34039735 | None:intergenic |
| GTATGCCAGACTCCTCCTCT+AGG | 0.556041 | 3_4:-34039362 | None:intergenic |
| CAAGGAAGCTACTCGTTCCA+TGG | 0.556398 | 3_4:-34039793 | None:intergenic |
| AGCTACTCGTTCCATGGTGA+GGG | 0.556455 | 3_4:-34039787 | None:intergenic |
| TTCAGGTATCATTACAGTCG+AGG | 0.557702 | 3_4:-34039736 | None:intergenic |
| TTTATGCAGCAAGTACTTGG+CGG | 0.558318 | 3_4:+34039411 | Msa0498260:CDS |
| GCTCCGCCCCGATCAGCCGA+AGG | 0.562506 | 3_4:+34039234 | Msa0498260:CDS |
| TAAAATCTATTGAGGAGGAG+GGG | 0.564663 | 3_4:-34040048 | None:intergenic |
| CAATAAAATGCCTCCAAAGA+CGG | 0.564719 | 3_4:-34039092 | None:intergenic |
| CTGCTCCAATATTAAAAGTG+AGG | 0.572912 | 3_4:-34039502 | None:intergenic |
| AGCAGAAGAAGGCGATTGGA+TGG | 0.573629 | 3_4:-34037580 | None:intergenic |
| GAAGAACCACCTTGGCCAGA+GGG | 0.573757 | 3_4:-34039648 | None:intergenic |
| CTCCGCCCCGATCAGCCGAA+GGG | 0.575025 | 3_4:+34039235 | Msa0498260:CDS |
| AAGCTACTCGTTCCATGGTG+AGG | 0.576410 | 3_4:-34039788 | None:intergenic |
| GCCGGATTCCGATGAGTGAT+CGG | 0.577293 | 3_4:-34037664 | None:intergenic |
| GATTTGTCAGTACTGCTGAA+AGG | 0.578338 | 3_4:+34039955 | Msa0498260:CDS |
| GCACTTACCAAAGCAGAAGA+AGG | 0.586991 | 3_4:-34037591 | None:intergenic |
| CCATATCACCGATCACTCAT+CGG | 0.587861 | 3_4:+34037656 | Msa0498260:CDS |
| ATGTCACCCTCTGGCCAAGG+TGG | 0.595449 | 3_4:+34039642 | Msa0498260:CDS |
| TCCGCCCCGATCAGCCGAAG+GGG | 0.596037 | 3_4:+34039236 | Msa0498260:CDS |
| AAAAGCGATCTGAAGTTCGC+CGG | 0.603308 | 3_4:-34037682 | None:intergenic |
| TATACCAATTTGTTTCAATG+TGG | 0.605452 | 3_4:-34039454 | None:intergenic |
| CTCGCCCGGAAGAACCACCT+TGG | 0.608997 | 3_4:-34039656 | None:intergenic |
| TCGTCCCCTTCGGCTGATCG+GGG | 0.610635 | 3_4:-34039240 | None:intergenic |
| TAATTTAAAATCTATTGAGG+AGG | 0.624087 | 3_4:-34040053 | None:intergenic |
| TTTACCGCAGACGAATTCAA+AGG | 0.627122 | 3_4:-34039384 | None:intergenic |
| GGAAGAACCACCTTGGCCAG+AGG | 0.628654 | 3_4:-34039649 | None:intergenic |
| TCCCCTTCGGCTGATCGGGG+CGG | 0.629349 | 3_4:-34039237 | None:intergenic |
| TGTCAGTACTGCTGAAAGGG+TGG | 0.632691 | 3_4:+34039959 | Msa0498260:CDS |
| TCGAGGCATTGAATACATTG+AGG | 0.634411 | 3_4:+34039559 | Msa0498260:CDS |
| CAGGTATCATTACAGTCGAG+GGG | 0.643753 | 3_4:-34039734 | None:intergenic |
| GAGTGGGGAACACCTAGAGG+AGG | 0.656225 | 3_4:+34039350 | Msa0498260:CDS |
| CATACCTTTGAATTCGTCTG+CGG | 0.656627 | 3_4:+34039380 | Msa0498260:CDS |
| TTATTATTTCATGGGAGGTG+CGG | 0.663417 | 3_4:+34039119 | Msa0498260:CDS |
| TTGTGCCACTCACTGCAACA+CGG | 0.665742 | 3_4:-34038364 | None:intergenic |
| AAATCGGTTGAAACTGCTGG+AGG | 0.679706 | 3_4:+34039695 | Msa0498260:CDS |
| AAAGAGTGGGGAACACCTAG+AGG | 0.683816 | 3_4:+34039347 | Msa0498260:CDS |
| AGTTGAACAAGCCCTCACCA+TGG | 0.691356 | 3_4:+34039776 | Msa0498260:CDS |
| TGATGGGGATAAGGTCATCG+AGG | 0.725311 | 3_4:+34039542 | Msa0498260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTATTTTTT+TGG | - | chr3_4:34038030-34038049 | None:intergenic | 0.0% |
| !!! | TTCAATTTTTTACTTAATTT+AGG | + | chr3_4:34037853-34037872 | Msa0498260:intron | 10.0% |
| !!! | TCAATTTTTTACTTAATTTA+GGG | + | chr3_4:34037854-34037873 | Msa0498260:intron | 10.0% |
| !! | TAAAATAAAAAAAAAACATG+TGG | + | chr3_4:34038036-34038055 | Msa0498260:intron | 10.0% |
| !!! | ATGTTATTATTTTAGTTTTA+TGG | + | chr3_4:34038965-34038984 | Msa0498260:intron | 10.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr3_4:34038148-34038167 | Msa0498260:intron | 15.0% |
| !! | TATTAAGCCTTAATTATTTA+GGG | + | chr3_4:34038213-34038232 | Msa0498260:intron | 15.0% |
| !!! | AAAAAAAGAAAGTGTTTAAT+TGG | + | chr3_4:34038268-34038287 | Msa0498260:intron | 15.0% |
| !!! | AAAAAAGAAAGTGTTTAATT+GGG | + | chr3_4:34038269-34038288 | Msa0498260:intron | 15.0% |
| !! | AAGAAGAAAAGAATAAGAAT+CGG | - | chr3_4:34037761-34037780 | None:intergenic | 20.0% |
| !!! | TTCTTATTCTTTTCTTCTTT+CGG | + | chr3_4:34037762-34037781 | Msa0498260:intron | 20.0% |
| !!! | AATTTAGGGTTTATGAATAT+AGG | + | chr3_4:34037868-34037887 | Msa0498260:intron | 20.0% |
| !!! | ATTTAGGGTTTATGAATATA+GGG | + | chr3_4:34037869-34037888 | Msa0498260:intron | 20.0% |
| !!! | TTATTTTATTTTTTTGGCCT+GGG | - | chr3_4:34038024-34038043 | None:intergenic | 20.0% |
| !!! | TTTATTTTATTTTTTTGGCC+TGG | - | chr3_4:34038025-34038044 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr3_4:34038147-34038166 | Msa0498260:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr3_4:34038149-34038168 | Msa0498260:intron | 20.0% |
| !! | CTATTAAGCCTTAATTATTT+AGG | + | chr3_4:34038212-34038231 | Msa0498260:intron | 20.0% |
| !!! | AGCATATTTTTAAAAGATCA+TGG | + | chr3_4:34038787-34038806 | Msa0498260:intron | 20.0% |
| !!! | GCATATTTTTAAAAGATCAT+GGG | + | chr3_4:34038788-34038807 | Msa0498260:intron | 20.0% |
| !! | AAAATATAACACTATTAGAC+TGG | - | chr3_4:34038819-34038838 | None:intergenic | 20.0% |
| !!! | TCTAATAGTGTTATATTTTG+AGG | + | chr3_4:34038820-34038839 | Msa0498260:intron | 20.0% |
| !!! | CTAATAGTGTTATATTTTGA+GGG | + | chr3_4:34038821-34038840 | Msa0498260:intron | 20.0% |
| !! | TTGATTATTTATTTATGCTG+TGG | + | chr3_4:34039034-34039053 | Msa0498260:intron | 20.0% |
| !!! | TATTGTTGGTTATTATTTCA+TGG | + | chr3_4:34039110-34039129 | Msa0498260:CDS | 20.0% |
| !!! | ATTGTTGGTTATTATTTCAT+GGG | + | chr3_4:34039111-34039130 | Msa0498260:CDS | 20.0% |
| !!! | AAATTTTTTGAGCTTATTGA+TGG | + | chr3_4:34039525-34039544 | Msa0498260:CDS | 20.0% |
| !!! | AATTTTTTGAGCTTATTGAT+GGG | + | chr3_4:34039526-34039545 | Msa0498260:CDS | 20.0% |
| !! | TGGTATAGATATGTGTTTTA+CGG | - | chr3_4:34037563-34037582 | None:intergenic | 25.0% |
| ! | GTTTATGAATATAGGGTTTA+GGG | + | chr3_4:34037876-34037895 | Msa0498260:intron | 25.0% |
| !!! | TATTTTATTTTTTTGGCCTG+GGG | - | chr3_4:34038023-34038042 | None:intergenic | 25.0% |
| ! | GCTTAATCCCTAAATAATTA+AGG | - | chr3_4:34038223-34038242 | None:intergenic | 25.0% |
| !! | AGTTTACATGTGTAATTTGT+TGG | + | chr3_4:34038646-34038665 | Msa0498260:intron | 25.0% |
| ! | TTTGGTCATTAAAAAACTAG+AGG | + | chr3_4:34038883-34038902 | Msa0498260:intron | 25.0% |
| ! | TTGGTCATTAAAAAACTAGA+GGG | + | chr3_4:34038884-34038903 | Msa0498260:intron | 25.0% |
| ! | TCTTTGTAAAGAGAACATAA+GGG | + | chr3_4:34038909-34038928 | Msa0498260:intron | 25.0% |
| !!! | AGCATTTTGAAACACTTATT+TGG | - | chr3_4:34038995-34039014 | None:intergenic | 25.0% |
| !! | TATACCAATTTGTTTCAATG+TGG | - | chr3_4:34039457-34039476 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAGCTTATTGATG+GGG | + | chr3_4:34039527-34039546 | Msa0498260:CDS | 25.0% |
| !! | ATTTTGTAAGGGCAAAAAAT+CGG | + | chr3_4:34039679-34039698 | Msa0498260:CDS | 25.0% |
| ! | GGTATAGATATGTGTTTTAC+GGG | - | chr3_4:34037562-34037581 | None:intergenic | 30.0% |
| CAGAGAAAGAAAAGAGAAAT+CGG | + | chr3_4:34037615-34037634 | Msa0498260:CDS | 30.0% | |
| AAAATGATCAAAGGACTTAC+CGG | - | chr3_4:34037717-34037736 | None:intergenic | 30.0% | |
| TAGGAAGTGAAAATGATCAA+AGG | - | chr3_4:34037726-34037745 | None:intergenic | 30.0% | |
| ! | TTTGATCATTTTCACTTCCT+AGG | + | chr3_4:34037725-34037744 | Msa0498260:intron | 30.0% |
| TTAATGCTAAGTTCTTGCTT+TGG | + | chr3_4:34037812-34037831 | Msa0498260:intron | 30.0% | |
| GGTTTATGAATATAGGGTTT+AGG | + | chr3_4:34037875-34037894 | Msa0498260:intron | 30.0% | |
| ! | AGGGTTTAGGGATTAATTTT+TGG | + | chr3_4:34037888-34037907 | Msa0498260:intron | 30.0% |
| !! | TTTGGCTTAATAGCAGTTTT+CGG | + | chr3_4:34037906-34037925 | Msa0498260:intron | 30.0% |
| TCGGTAATTATAAACTCAGA+TGG | + | chr3_4:34038608-34038627 | Msa0498260:intron | 30.0% | |
| TTACACATGTAAACTCACAT+TGG | - | chr3_4:34038641-34038660 | None:intergenic | 30.0% | |
| !! | ATAGTGTTATATTTTGAGGG+AGG | + | chr3_4:34038824-34038843 | Msa0498260:intron | 30.0% |
| ! | TAGCAATTAAGCAAGGTTTT+TGG | + | chr3_4:34038865-34038884 | Msa0498260:intron | 30.0% |
| TGGTCATTAAAAAACTAGAG+GGG | + | chr3_4:34038885-34038904 | Msa0498260:intron | 30.0% | |
| GTCTTTGTAAAGAGAACATA+AGG | + | chr3_4:34038908-34038927 | Msa0498260:intron | 30.0% | |
| TTGTGTAGAAATTTGCATCT+AGG | + | chr3_4:34039069-34039088 | Msa0498260:intron | 30.0% | |
| ! | AATTTCGTTCTTTTCAAAGC+TGG | - | chr3_4:34039156-34039175 | None:intergenic | 30.0% |
| ACCTAATAGTTCATCTTCTA+TGG | + | chr3_4:34039179-34039198 | Msa0498260:CDS | 30.0% | |
| TCCATAGAAGATGAACTATT+AGG | - | chr3_4:34039183-34039202 | None:intergenic | 30.0% | |
| AAAAGGGAGCTTAAAAAGAA+GGG | + | chr3_4:34039278-34039297 | Msa0498260:CDS | 30.0% | |
| TAAAAAGAAGGGAGTTTGTA+AGG | + | chr3_4:34039289-34039308 | Msa0498260:CDS | 30.0% | |
| ! | AGATGTTCTAATCTCTTTTC+AGG | - | chr3_4:34039756-34039775 | None:intergenic | 30.0% |
| GAAGTATAAGCTTGATTAGT+AGG | - | chr3_4:34039882-34039901 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATGATAACGAAT+CGG | + | chr3_4:34039905-34039924 | Msa0498260:CDS | 30.0% |
| !! | AGAAAAGAGAAATCGGTTTG+AGG | + | chr3_4:34037622-34037641 | Msa0498260:CDS | 35.0% |
| !! | GAAAAGAGAAATCGGTTTGA+GGG | + | chr3_4:34037623-34037642 | Msa0498260:CDS | 35.0% |
| ! | TTTGGATTGTTGTTGTTCAC+TGG | + | chr3_4:34037830-34037849 | Msa0498260:intron | 35.0% |
| TATTGACCAAAATCGCAACT+TGG | - | chr3_4:34037944-34037963 | None:intergenic | 35.0% | |
| TGCTACAGTTGCAAAACTTA+GGG | - | chr3_4:34037993-34038012 | None:intergenic | 35.0% | |
| ! | TTTTGCAACTGTAGCAGTTT+AGG | + | chr3_4:34037997-34038016 | Msa0498260:intron | 35.0% |
| TAGCACGCTTGTAAAATTGT+TGG | + | chr3_4:34038243-34038262 | Msa0498260:intron | 35.0% | |
| AGCACGCTTGTAAAATTGTT+GGG | + | chr3_4:34038244-34038263 | Msa0498260:intron | 35.0% | |
| AACAAGATTCAATGTTGCGT+CGG | + | chr3_4:34038589-34038608 | Msa0498260:intron | 35.0% | |
| CAAAAGTGAAGCTTAAGTCA+GGG | - | chr3_4:34038745-34038764 | None:intergenic | 35.0% | |
| TCAAAAGTGAAGCTTAAGTC+AGG | - | chr3_4:34038746-34038765 | None:intergenic | 35.0% | |
| !! | TAAGCTTCACTTTTGAACCT+TGG | + | chr3_4:34038750-34038769 | Msa0498260:intron | 35.0% |
| CTTAGTCTAGCAATTAAGCA+AGG | + | chr3_4:34038858-34038877 | Msa0498260:intron | 35.0% | |
| GGTCATTAAAAAACTAGAGG+GGG | + | chr3_4:34038886-34038905 | Msa0498260:intron | 35.0% | |
| TTGTAAAGAGAACATAAGGG+AGG | + | chr3_4:34038912-34038931 | Msa0498260:intron | 35.0% | |
| CAATAAAATGCCTCCAAAGA+CGG | - | chr3_4:34039095-34039114 | None:intergenic | 35.0% | |
| !!! | CTTTGGAGGCATTTTATTGT+TGG | + | chr3_4:34039096-34039115 | Msa0498260:CDS | 35.0% |
| GTTGGTTATTATTTCATGGG+AGG | + | chr3_4:34039114-34039133 | Msa0498260:CDS | 35.0% | |
| TTATTATTTCATGGGAGGTG+CGG | + | chr3_4:34039119-34039138 | Msa0498260:CDS | 35.0% | |
| CAAAAGGGAGCTTAAAAAGA+AGG | + | chr3_4:34039277-34039296 | Msa0498260:CDS | 35.0% | |
| TCTCTTGGTTACAAAAAGAG+TGG | + | chr3_4:34039333-34039352 | Msa0498260:CDS | 35.0% | |
| CTCTTGGTTACAAAAAGAGT+GGG | + | chr3_4:34039334-34039353 | Msa0498260:CDS | 35.0% | |
| TCTTGGTTACAAAAAGAGTG+GGG | + | chr3_4:34039335-34039354 | Msa0498260:CDS | 35.0% | |
| CTAGCCACATTGAAACAAAT+TGG | + | chr3_4:34039450-34039469 | Msa0498260:CDS | 35.0% | |
| !! | AGAAGATGAAAGCATCGTTA+AGG | + | chr3_4:34039476-34039495 | Msa0498260:CDS | 35.0% |
| CTGCTCCAATATTAAAAGTG+AGG | - | chr3_4:34039505-34039524 | None:intergenic | 35.0% | |
| AAAAAATCGGTTGAAACTGC+TGG | + | chr3_4:34039692-34039711 | Msa0498260:CDS | 35.0% | |
| AAATCTTCCAAAATCAGCTC+TGG | - | chr3_4:34039940-34039959 | None:intergenic | 35.0% | |
| ATTTGTCAGTACTGCTGAAA+GGG | + | chr3_4:34039956-34039975 | Msa0498260:CDS | 35.0% | |
| GAATAAGAATCGGAAACTGC+AGG | - | chr3_4:34037751-34037770 | None:intergenic | 40.0% | |
| ! | CTTTCACCAAGTTGCGATTT+TGG | + | chr3_4:34037935-34037954 | Msa0498260:intron | 40.0% |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr3_4:34037992-34038011 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | - | chr3_4:34037994-34038013 | None:intergenic | 40.0% | |
| AGACCGAGTCAAAATTGGTT+TGG | + | chr3_4:34038087-34038106 | Msa0498260:intron | 40.0% | |
| ! | GACCGAGTCAAAATTGGTTT+GGG | + | chr3_4:34038088-34038107 | Msa0498260:intron | 40.0% |
| !! | ACCGAGTCAAAATTGGTTTG+GGG | + | chr3_4:34038089-34038108 | Msa0498260:intron | 40.0% |
| !!! | TCCCCAAACCAATTTTGACT+CGG | - | chr3_4:34038093-34038112 | None:intergenic | 40.0% |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr3_4:34038175-34038194 | None:intergenic | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | + | chr3_4:34038177-34038196 | Msa0498260:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | + | chr3_4:34038178-34038197 | Msa0498260:intron | 40.0% |
| GCACGCTTGTAAAATTGTTG+GGG | + | chr3_4:34038245-34038264 | Msa0498260:intron | 40.0% | |
| ! | ACTCTGTCCGTCTTTTATGA+AGG | + | chr3_4:34038716-34038735 | Msa0498260:intron | 40.0% |
| !! | CTTCACTTTTGAACCTTGGT+AGG | + | chr3_4:34038754-34038773 | Msa0498260:intron | 40.0% |
| TAAAGAGAACATAAGGGAGG+TGG | + | chr3_4:34038915-34038934 | Msa0498260:intron | 40.0% | |
| ACGAAGTTGTTGGCACAAAA+GGG | + | chr3_4:34039262-34039281 | Msa0498260:CDS | 40.0% | |
| ACCAAAGCGATGTATTCTCT+TGG | + | chr3_4:34039318-34039337 | Msa0498260:CDS | 40.0% | |
| ACCAAGAGAATACATCGCTT+TGG | - | chr3_4:34039322-34039341 | None:intergenic | 40.0% | |
| CATACCTTTGAATTCGTCTG+CGG | + | chr3_4:34039380-34039399 | Msa0498260:CDS | 40.0% | |
| TTTACCGCAGACGAATTCAA+AGG | - | chr3_4:34039387-34039406 | None:intergenic | 40.0% | |
| CTGTTTATGCAGCAAGTACT+TGG | + | chr3_4:34039408-34039427 | Msa0498260:CDS | 40.0% | |
| TTTATGCAGCAAGTACTTGG+CGG | + | chr3_4:34039411-34039430 | Msa0498260:CDS | 40.0% | |
| !! | GGCTGCCTCACTTTTAATAT+TGG | + | chr3_4:34039497-34039516 | Msa0498260:CDS | 40.0% |
| TGAGCTTATTGATGGGGATA+AGG | + | chr3_4:34039533-34039552 | Msa0498260:CDS | 40.0% | |
| !! | TCGAGGCATTGAATACATTG+AGG | + | chr3_4:34039559-34039578 | Msa0498260:CDS | 40.0% |
| TCAGGTATCATTACAGTCGA+GGG | - | chr3_4:34039738-34039757 | None:intergenic | 40.0% | |
| TTCAGGTATCATTACAGTCG+AGG | - | chr3_4:34039739-34039758 | None:intergenic | 40.0% | |
| TCGTCATGTTCAGATGACTT+TGG | + | chr3_4:34039843-34039862 | Msa0498260:CDS | 40.0% | |
| !! | AACTTGTCCAGAGCTGATTT+TGG | + | chr3_4:34039930-34039949 | Msa0498260:CDS | 40.0% |
| GATTTGTCAGTACTGCTGAA+AGG | + | chr3_4:34039955-34039974 | Msa0498260:CDS | 40.0% | |
| GCACTTACCAAAGCAGAAGA+AGG | - | chr3_4:34037594-34037613 | None:intergenic | 45.0% | |
| CCATATCACCGATCACTCAT+CGG | + | chr3_4:34037656-34037675 | Msa0498260:CDS | 45.0% | |
| ! | AAAAGCGATCTGAAGTTCGC+CGG | - | chr3_4:34037685-34037704 | None:intergenic | 45.0% |
| !! | GATCGCTTTTCTTGCTTCTC+CGG | + | chr3_4:34037695-34037714 | Msa0498260:CDS | 45.0% |
| ACAGTTGCAAAACTTAGGGG+CGG | - | chr3_4:34037989-34038008 | None:intergenic | 45.0% | |
| AAACATGTGGCACCTCACTT+AGG | + | chr3_4:34038049-34038068 | Msa0498260:intron | 45.0% | |
| AACATGTGGCACCTCACTTA+GGG | + | chr3_4:34038050-34038069 | Msa0498260:intron | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr3_4:34038082-34038101 | Msa0498260:intron | 45.0% | |
| ! | TTTTGCACCTGTGGCAGTTT+TGG | - | chr3_4:34038116-34038135 | None:intergenic | 45.0% |
| TGCCACAGGTGCAAAACTTA+AGG | + | chr3_4:34038120-34038139 | Msa0498260:intron | 45.0% | |
| GCCACAGGTGCAAAACTTAA+GGG | + | chr3_4:34038121-34038140 | Msa0498260:intron | 45.0% | |
| CCACAGGTGCAAAACTTAAG+GGG | + | chr3_4:34038122-34038141 | Msa0498260:intron | 45.0% | |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | + | chr3_4:34038179-34038198 | Msa0498260:intron | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | + | chr3_4:34038180-34038199 | Msa0498260:intron | 45.0% |
| ! | AGGGCGTCCTTCATAAAAGA+CGG | - | chr3_4:34038726-34038745 | None:intergenic | 45.0% |
| GCTAGCATATCTTCCTACCA+AGG | - | chr3_4:34038770-34038789 | None:intergenic | 45.0% | |
| ATTTGCATCTAGGCCGTCTT+TGG | + | chr3_4:34039079-34039098 | Msa0498260:intron | 45.0% | |
| TCTTCTATGGAGCACGTTGT+AGG | + | chr3_4:34039192-34039211 | Msa0498260:CDS | 45.0% | |
| AGGCTCAACAAGTGACTTGA+TGG | + | chr3_4:34039212-34039231 | Msa0498260:CDS | 45.0% | |
| GACGAAGTTGTTGGCACAAA+AGG | + | chr3_4:34039261-34039280 | Msa0498260:CDS | 45.0% | |
| ! | TTCCGGGCGAGATTTTGTAA+GGG | + | chr3_4:34039668-34039687 | Msa0498260:CDS | 45.0% |
| AAATCGGTTGAAACTGCTGG+AGG | + | chr3_4:34039695-34039714 | Msa0498260:CDS | 45.0% | |
| CAGGTATCATTACAGTCGAG+GGG | - | chr3_4:34039737-34039756 | None:intergenic | 45.0% | |
| AGCAGAAGAAGGCGATTGGA+TGG | - | chr3_4:34037583-34037602 | None:intergenic | 50.0% | |
| CCAAAGCAGAAGAAGGCGAT+TGG | - | chr3_4:34037587-34037606 | None:intergenic | 50.0% | |
| CCAATCGCCTTCTTCTGCTT+TGG | + | chr3_4:34037584-34037603 | Msa0498260:CDS | 50.0% | |
| CCGATGAGTGATCGGTGATA+TGG | - | chr3_4:34037659-34037678 | None:intergenic | 50.0% | |
| ACCGATCACTCATCGGAATC+CGG | + | chr3_4:34037663-34037682 | Msa0498260:CDS | 50.0% | |
| ! | CCCCTTAAGTTTTGCACCTG+TGG | - | chr3_4:34038125-34038144 | None:intergenic | 50.0% |
| CAGGTGCAAAACTTAAGGGG+TGG | + | chr3_4:34038125-34038144 | Msa0498260:intron | 50.0% | |
| AGGGGCCAAAATCGCAACTT+TGG | + | chr3_4:34038167-34038186 | Msa0498260:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | + | chr3_4:34038168-34038187 | Msa0498260:intron | 50.0% | |
| ! | TTGTGCCACTCACTGCAACA+CGG | - | chr3_4:34038367-34038386 | None:intergenic | 50.0% |
| AACAACTTCGTCGTCCCCTT+CGG | - | chr3_4:34039253-34039272 | None:intergenic | 50.0% | |
| AAAGAGTGGGGAACACCTAG+AGG | + | chr3_4:34039347-34039366 | Msa0498260:CDS | 50.0% | |
| AGCAAGTACTTGGCGGTGAT+TGG | + | chr3_4:34039418-34039437 | Msa0498260:CDS | 50.0% | |
| GCAAGTACTTGGCGGTGATT+GGG | + | chr3_4:34039419-34039438 | Msa0498260:CDS | 50.0% | |
| TGATGGGGATAAGGTCATCG+AGG | + | chr3_4:34039542-34039561 | Msa0498260:CDS | 50.0% | |
| ! | CTTCCGGGCGAGATTTTGTA+AGG | + | chr3_4:34039667-34039686 | Msa0498260:CDS | 50.0% |
| TGCCCTTACAAAATCTCGCC+CGG | - | chr3_4:34039673-34039692 | None:intergenic | 50.0% | |
| AGTTGAACAAGCCCTCACCA+TGG | + | chr3_4:34039776-34039795 | Msa0498260:CDS | 50.0% | |
| AGCTACTCGTTCCATGGTGA+GGG | - | chr3_4:34039790-34039809 | None:intergenic | 50.0% | |
| AAGCTACTCGTTCCATGGTG+AGG | - | chr3_4:34039791-34039810 | None:intergenic | 50.0% | |
| CAAGGAAGCTACTCGTTCCA+TGG | - | chr3_4:34039796-34039815 | None:intergenic | 50.0% | |
| TGTCAGTACTGCTGAAAGGG+TGG | + | chr3_4:34039959-34039978 | Msa0498260:CDS | 50.0% | |
| GCCGGATTCCGATGAGTGAT+CGG | - | chr3_4:34037667-34037686 | None:intergenic | 55.0% | |
| GAATCGGAAACTGCAGGCCT+AGG | - | chr3_4:34037745-34037764 | None:intergenic | 55.0% | |
| ACTGTAGCAGTTTAGGCCCC+AGG | + | chr3_4:34038004-34038023 | Msa0498260:intron | 55.0% | |
| CTGACGTAGCACCCTAAGTG+AGG | - | chr3_4:34038064-34038083 | None:intergenic | 55.0% | |
| TTGGGGACCAAAACTGCCAC+AGG | + | chr3_4:34038106-34038125 | Msa0498260:intron | 55.0% | |
| GCAACACGGAACTGCGAAGT+CGG | - | chr3_4:34038353-34038372 | None:intergenic | 55.0% | |
| CAGTTCCGTGTTGCAGTGAG+TGG | + | chr3_4:34038359-34038378 | Msa0498260:intron | 55.0% | |
| TGCATCTAGGCCGTCTTTGG+AGG | + | chr3_4:34039082-34039101 | Msa0498260:intron | 55.0% | |
| GAAGGGGACGACGAAGTTGT+TGG | + | chr3_4:34039252-34039271 | Msa0498260:CDS | 55.0% | |
| GAACACCTAGAGGAGGAGTC+TGG | + | chr3_4:34039357-34039376 | Msa0498260:CDS | 55.0% | |
| GTATGCCAGACTCCTCCTCT+AGG | - | chr3_4:34039365-34039384 | None:intergenic | 55.0% | |
| TCCTGCTTCATGTCACCCTC+TGG | + | chr3_4:34039633-34039652 | Msa0498260:CDS | 55.0% | |
| TTCATGTCACCCTCTGGCCA+AGG | + | chr3_4:34039639-34039658 | Msa0498260:CDS | 55.0% | |
| GAAGAACCACCTTGGCCAGA+GGG | - | chr3_4:34039651-34039670 | None:intergenic | 55.0% | |
| TCTGGCCAAGGTGGTTCTTC+CGG | + | chr3_4:34039651-34039670 | Msa0498260:CDS | 55.0% | |
| TTCCTTGTGTCGCAACGCGT+TGG | + | chr3_4:34039809-34039828 | Msa0498260:CDS | 55.0% | |
| ATCCAACGCGTTGCGACACA+AGG | - | chr3_4:34039814-34039833 | None:intergenic | 55.0% | |
| GAGGAGGAGGGGTTCGAAAT+AGG | - | chr3_4:34040040-34040059 | None:intergenic | 55.0% | |
| GAGTGGGGAACACCTAGAGG+AGG | + | chr3_4:34039350-34039369 | Msa0498260:CDS | 60.0% | |
| GCCAGAGGGTGACATGAAGC+AGG | - | chr3_4:34039637-34039656 | None:intergenic | 60.0% | |
| ATGTCACCCTCTGGCCAAGG+TGG | + | chr3_4:34039642-34039661 | Msa0498260:CDS | 60.0% | |
| GGAAGAACCACCTTGGCCAG+AGG | - | chr3_4:34039652-34039671 | None:intergenic | 60.0% | |
| CTGGCCAAGGTGGTTCTTCC+GGG | + | chr3_4:34039652-34039671 | Msa0498260:CDS | 60.0% | |
| TCGTCCCCTTCGGCTGATCG+GGG | - | chr3_4:34039243-34039262 | None:intergenic | 65.0% | |
| GTCGTCCCCTTCGGCTGATC+GGG | - | chr3_4:34039244-34039263 | None:intergenic | 65.0% | |
| CGTCGTCCCCTTCGGCTGAT+CGG | - | chr3_4:34039245-34039264 | None:intergenic | 65.0% | |
| CTCGCCCGGAAGAACCACCT+TGG | - | chr3_4:34039659-34039678 | None:intergenic | 65.0% | |
| CTCCGCCCCGATCAGCCGAA+GGG | + | chr3_4:34039235-34039254 | Msa0498260:CDS | 70.0% | |
| TCCGCCCCGATCAGCCGAAG+GGG | + | chr3_4:34039236-34039255 | Msa0498260:CDS | 70.0% | |
| TCCCCTTCGGCTGATCGGGG+CGG | - | chr3_4:34039240-34039259 | None:intergenic | 70.0% | |
| GCTCCGCCCCGATCAGCCGA+AGG | + | chr3_4:34039234-34039253 | Msa0498260:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 34037546 | 34040064 | 34037546 | ID=Msa0498260;Name=Msa0498260 |
| chr3_4 | mRNA | 34037546 | 34040064 | 34037546 | ID=Msa0498260-mRNA-1;Parent=Msa0498260;Name=Msa0498260-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|0|0.33|0.66|1|1|3|0|390 |
| chr3_4 | exon | 34037546 | 34037716 | 34037546 | ID=Msa0498260-mRNA-1:exon:7254;Parent=Msa0498260-mRNA-1 |
| chr3_4 | exon | 34038362 | 34038389 | 34038362 | ID=Msa0498260-mRNA-1:exon:7255;Parent=Msa0498260-mRNA-1 |
| chr3_4 | exon | 34039091 | 34040064 | 34039091 | ID=Msa0498260-mRNA-1:exon:7256;Parent=Msa0498260-mRNA-1 |
| chr3_4 | CDS | 34037546 | 34037716 | 34037546 | ID=Msa0498260-mRNA-1:cds;Parent=Msa0498260-mRNA-1 |
| chr3_4 | CDS | 34038362 | 34038389 | 34038362 | ID=Msa0498260-mRNA-1:cds;Parent=Msa0498260-mRNA-1 |
| chr3_4 | CDS | 34039091 | 34040064 | 34039091 | ID=Msa0498260-mRNA-1:cds;Parent=Msa0498260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
