Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450930 | XP_013459620.1 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450930 | sp|Q9FNN2|WDR26_ARATH | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.18e-70 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450930 | A0A072UW48 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001520 | Msa0450930 | 0.808160 | 3.550748e-50 | -8.615850e-47 |
| Msa0020390 | Msa0450930 | 0.873995 | 9.542398e-68 | -8.615850e-47 |
| Msa0029260 | Msa0450930 | 0.831889 | 1.292288e-55 | -8.615850e-47 |
| Msa0033880 | Msa0450930 | 0.800148 | 1.650940e-48 | -8.615850e-47 |
| Msa0068020 | Msa0450930 | 0.824106 | 9.662731e-54 | -8.615850e-47 |
| Msa0077010 | Msa0450930 | 0.807699 | 4.450179e-50 | -8.615850e-47 |
| Msa0115190 | Msa0450930 | 0.813762 | 2.172561e-51 | -8.615850e-47 |
| Msa0115370 | Msa0450930 | 0.800823 | 1.202747e-48 | -8.615850e-47 |
| Msa0116380 | Msa0450930 | 0.809932 | 1.482079e-50 | -8.615850e-47 |
| Msa0126840 | Msa0450930 | 0.833478 | 5.210714e-56 | -8.615850e-47 |
| Msa0149440 | Msa0450930 | 0.804846 | 1.775687e-49 | -8.615850e-47 |
| Msa0169300 | Msa0450930 | 0.827777 | 1.297224e-54 | -8.615850e-47 |
| Msa0175200 | Msa0450930 | 0.809277 | 2.049137e-50 | -8.615850e-47 |
| Msa0183870 | Msa0450930 | 0.832839 | 7.519370e-56 | -8.615850e-47 |
| Msa0189520 | Msa0450930 | 0.815346 | 9.692202e-52 | -8.615850e-47 |
| Msa0190590 | Msa0450930 | 0.821036 | 4.997594e-53 | -8.615850e-47 |
| Msa0191070 | Msa0450930 | 0.811544 | 6.640419e-51 | -8.615850e-47 |
| Msa0209500 | Msa0450930 | 0.807772 | 4.293941e-50 | -8.615850e-47 |
| Msa0231100 | Msa0450930 | 0.821088 | 4.862590e-53 | -8.615850e-47 |
| Msa0233370 | Msa0450930 | 0.811574 | 6.540724e-51 | -8.615850e-47 |
| Msa0380370 | Msa0450930 | 0.816233 | 6.147016e-52 | -8.615850e-47 |
| Msa0385490 | Msa0450930 | 0.816291 | 5.966367e-52 | -8.615850e-47 |
| Msa0385500 | Msa0450930 | 0.840020 | 1.117990e-57 | -8.615850e-47 |
| Msa0389510 | Msa0450930 | 0.815078 | 1.111618e-51 | -8.615850e-47 |
| Msa0427860 | Msa0450930 | -0.820220 | 7.695317e-53 | -8.615850e-47 |
| Msa0443390 | Msa0450930 | 0.814322 | 1.634291e-51 | -8.615850e-47 |
| Msa0450930 | Msa0458640 | 0.816979 | 4.181325e-52 | -8.615850e-47 |
| Msa0450930 | Msa0474090 | -0.821617 | 3.671235e-53 | -8.615850e-47 |
| Msa0450930 | Msa0498260 | 0.911702 | 4.508278e-83 | -8.615850e-47 |
| Msa0450930 | Msa0534900 | 0.813945 | 1.979077e-51 | -8.615850e-47 |
| Msa0450930 | Msa0542290 | 0.806984 | 6.307232e-50 | -8.615850e-47 |
| Msa0450930 | Msa0542560 | 0.819239 | 1.289245e-52 | -8.615850e-47 |
| Msa0450930 | Msa0580230 | 0.820375 | 7.091139e-53 | -8.615850e-47 |
| Msa0450930 | Msa0581110 | 0.800075 | 1.708380e-48 | -8.615850e-47 |
| Msa0450930 | Msa0581130 | 0.820147 | 7.998496e-53 | -8.615850e-47 |
| Msa0450930 | Msa0581280 | 0.800867 | 1.178158e-48 | -8.615850e-47 |
| Msa0450930 | Msa0588260 | 0.847405 | 1.180458e-59 | -8.615850e-47 |
| Msa0450930 | Msa0603570 | 0.836128 | 1.121765e-56 | -8.615850e-47 |
| Msa0450930 | Msa0604290 | 0.817084 | 3.961225e-52 | -8.615850e-47 |
| Msa0450930 | Msa0607690 | 0.803279 | 3.760414e-49 | -8.615850e-47 |
| Msa0450930 | Msa0610550 | 0.810675 | 1.024634e-50 | -8.615850e-47 |
| Msa0450930 | Msa0615580 | 0.841839 | 3.725625e-58 | -8.615850e-47 |
| Msa0450930 | Msa0631350 | 0.832128 | 1.127946e-55 | -8.615850e-47 |
| Msa0450930 | Msa0634890 | 0.810830 | 9.485509e-51 | -8.615850e-47 |
| Msa0450930 | Msa0669720 | 0.818050 | 2.399446e-52 | -8.615850e-47 |
| Msa0450930 | Msa0669760 | 0.804905 | 1.725862e-49 | -8.615850e-47 |
| Msa0450930 | Msa0672100 | 0.806379 | 8.466306e-50 | -8.615850e-47 |
| Msa0450930 | Msa0689440 | 0.810379 | 1.187143e-50 | -8.615850e-47 |
| Msa0450930 | Msa0693210 | 0.834923 | 2.263342e-56 | -8.615850e-47 |
| Msa0450930 | Msa0722020 | 0.819042 | 1.429341e-52 | -8.615850e-47 |
| Msa0450930 | Msa0746210 | 0.800855 | 1.185074e-48 | -8.615850e-47 |
| Msa0450930 | Msa0748170 | 0.801936 | 7.115237e-49 | -8.615850e-47 |
| Msa0450930 | Msa0751010 | 0.813129 | 2.991929e-51 | -8.615850e-47 |
| Msa0450930 | Msa0769590 | 0.803230 | 3.849500e-49 | -8.615850e-47 |
| Msa0450930 | Msa0792780 | 0.805991 | 1.021577e-49 | -8.615850e-47 |
| Msa0450930 | Msa0800370 | 0.816558 | 5.199338e-52 | -8.615850e-47 |
| Msa0450930 | Msa0805500 | 0.826344 | 2.855611e-54 | -8.615850e-47 |
| Msa0450930 | Msa0806880 | 0.827463 | 1.542811e-54 | -8.615850e-47 |
| Msa0450930 | Msa0818750 | 0.807488 | 4.933644e-50 | -8.615850e-47 |
| Msa0450930 | Msa0831100 | 0.800646 | 1.307408e-48 | -8.615850e-47 |
| Msa0450930 | Msa0833190 | -0.809200 | 2.128337e-50 | -8.615850e-47 |
| Msa0450930 | Msa0880730 | 0.843030 | 1.799968e-58 | -8.615850e-47 |
| Msa0450930 | Msa0887250 | 0.846894 | 1.630287e-59 | -8.615850e-47 |
| Msa0450930 | Msa0892640 | 0.831733 | 1.412196e-55 | -8.615850e-47 |
| Msa0450930 | Msa0913240 | 0.815677 | 8.177591e-52 | -8.615850e-47 |
| Msa0450930 | Msa0933380 | 0.800680 | 1.286541e-48 | -8.615850e-47 |
| Msa0450930 | Msa0944200 | 0.814113 | 1.817612e-51 | -8.615850e-47 |
| Msa0450930 | Msa1039810 | 0.825219 | 5.281131e-54 | -8.615850e-47 |
| Msa0450930 | Msa1060260 | 0.814731 | 1.327005e-51 | -8.615850e-47 |
| Msa0450930 | Msa1072710 | 0.820821 | 5.601749e-53 | -8.615850e-47 |
| Msa0450930 | Msa1089320 | 0.804954 | 1.685501e-49 | -8.615850e-47 |
| Msa0450930 | Msa1120810 | 0.815447 | 9.203268e-52 | -8.615850e-47 |
| Msa0450930 | Msa1126500 | 0.815927 | 7.193892e-52 | -8.615850e-47 |
| Msa0450930 | Msa1126830 | 0.802483 | 5.491189e-49 | -8.615850e-47 |
| Msa0450930 | Msa1126850 | 0.813450 | 2.544117e-51 | -8.615850e-47 |
| Msa0450930 | Msa1128270 | 0.813477 | 2.509608e-51 | -8.615850e-47 |
| Msa0450930 | Msa1128280 | 0.833643 | 4.739278e-56 | -8.615850e-47 |
| Msa0450930 | Msa1133250 | 0.808439 | 3.095371e-50 | -8.615850e-47 |
| Msa0450930 | Msa1165270 | 0.850424 | 1.713069e-60 | -8.615850e-47 |
| Msa0450930 | Msa1165780 | 0.852688 | 3.918412e-61 | -8.615850e-47 |
| Msa0450930 | Msa1165960 | 0.824090 | 9.746090e-54 | -8.615850e-47 |
| Msa0450930 | Msa1202580 | 0.803691 | 3.089962e-49 | -8.615850e-47 |
| Msa0450930 | Msa1211830 | 0.810110 | 1.356297e-50 | -8.615850e-47 |
| Msa0450930 | Msa1218500 | 0.847359 | 1.215759e-59 | -8.615850e-47 |
| Msa0450930 | Msa1231840 | 0.801371 | 9.292829e-49 | -8.615850e-47 |
| Msa0450930 | Msa1264210 | 0.829016 | 6.515618e-55 | -8.615850e-47 |
| Msa0450930 | Msa1274560 | 0.806535 | 7.847971e-50 | -8.615850e-47 |
| Msa0450930 | Msa1278900 | 0.806940 | 6.443000e-50 | -8.615850e-47 |
| Msa0450930 | Msa1296830 | 0.834572 | 2.774352e-56 | -8.615850e-47 |
| Msa0450930 | Msa1303580 | 0.806526 | 7.881657e-50 | -8.615850e-47 |
| Msa0450930 | Msa1316360 | 0.817110 | 3.907377e-52 | -8.615850e-47 |
| Msa0450930 | Msa1332590 | 0.800945 | 1.135593e-48 | -8.615850e-47 |
| Msa0450930 | Msa1336560 | 0.814890 | 1.223465e-51 | -8.615850e-47 |
| Msa0450930 | Msa1351540 | 0.878880 | 1.963370e-69 | -8.615850e-47 |
| Msa0450930 | Msa1360140 | 0.805364 | 1.383637e-49 | -8.615850e-47 |
| Msa0450930 | Msa1362090 | 0.809370 | 1.956958e-50 | -8.615850e-47 |
| Msa0450930 | Msa1364210 | 0.806225 | 9.121579e-50 | -8.615850e-47 |
| Msa0450930 | Msa1375580 | 0.821705 | 3.502920e-53 | -8.615850e-47 |
| Msa0450930 | Msa1376580 | 0.814665 | 1.372613e-51 | -8.615850e-47 |
| Msa0450930 | Msa1413500 | 0.819953 | 8.858323e-53 | -8.615850e-47 |
| Msa0450930 | Msa1422810 | 0.803258 | 3.797734e-49 | -8.615850e-47 |
| Msa0450930 | Msa1436520 | 0.842769 | 2.111645e-58 | -8.615850e-47 |
| Msa0450930 | Msa1447890 | 0.805311 | 1.419503e-49 | -8.615850e-47 |
| Msa0450930 | Msa1454680 | 0.814257 | 1.689659e-51 | -8.615850e-47 |
| Msa0450930 | Msa1457220 | 0.833681 | 4.636829e-56 | -8.615850e-47 |
| Msa0450930 | Msa1458090 | 0.806565 | 7.733554e-50 | -8.615850e-47 |
| Msa0257490 | Msa0450930 | 0.834273 | 3.296862e-56 | -8.615850e-47 |
| Msa0271360 | Msa0450930 | 0.810574 | 1.077339e-50 | -8.615850e-47 |
| Msa0275360 | Msa0450930 | 0.822642 | 2.124179e-53 | -8.615850e-47 |
| Msa0281530 | Msa0450930 | 0.818424 | 1.974413e-52 | -8.615850e-47 |
| Msa0296790 | Msa0450930 | 0.831453 | 1.654959e-55 | -8.615850e-47 |
| Msa0296920 | Msa0450930 | 0.821080 | 4.882119e-53 | -8.615850e-47 |
| Msa0304660 | Msa0450930 | 0.809435 | 1.894648e-50 | -8.615850e-47 |
| Msa0309880 | Msa0450930 | 0.813394 | 2.617235e-51 | -8.615850e-47 |
| Msa0320590 | Msa0450930 | 0.825243 | 5.213508e-54 | -8.615850e-47 |
| Msa0321690 | Msa0450930 | 0.820333 | 7.248474e-53 | -8.615850e-47 |
| Msa0331700 | Msa0450930 | 0.807399 | 5.152282e-50 | -8.615850e-47 |
| Msa0355680 | Msa0450930 | 0.802299 | 5.992175e-49 | -8.615850e-47 |
| Msa0358770 | Msa0450930 | 0.839879 | 1.216757e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450930 | MtrunA17_Chr3g0095471 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 618 |
| Msa0450930 | MtrunA17_Chr3g0095501 | 66.436 | 289 | 88 | 3 | 1 | 281 | 1 | 288 | 1.05e-114 | 343 |
| Msa0450930 | MtrunA17_Chr5g0442391 | 58.131 | 289 | 106 | 5 | 1 | 281 | 1 | 282 | 4.51e-92 | 284 |
| Msa0450930 | MtrunA17_Chr1g0183051 | 32.212 | 208 | 132 | 3 | 46 | 252 | 7 | 206 | 2.55e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0450930 | AT5G08560.1 | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.21e-71 | 231 |
| Msa0450930 | AT5G08560.2 | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.21e-71 | 231 |
| Msa0450930 | AT5G08560.3 | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.21e-71 | 231 |
| Msa0450930 | AT5G43920.1 | 33.333 | 240 | 152 | 5 | 46 | 281 | 7 | 242 | 3.24e-27 | 111 |
Find 85 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGCCAAGGTGGTTCTTC+CGG | 0.265995 | 3_3:+37448100 | Msa0450930:CDS |
| ATTTGTATCTAGGCAGTCTT+TGG | 0.284144 | 3_3:+37447528 | Msa0450930:intron |
| CTGGCCAAGGTGGTTCTTCC+GGG | 0.287686 | 3_3:+37448101 | Msa0450930:CDS |
| AACTTGTCCAGAGCTGATTT+TGG | 0.291966 | 3_3:+37448379 | Msa0450930:CDS |
| GAGGAGGAGGGGTTCGAAAT+AGG | 0.313413 | 3_3:-37448486 | None:intergenic |
| ACCTAATAGTTCATCTTCTA+TGG | 0.313662 | 3_3:+37447628 | Msa0450930:CDS |
| TGTTGTTGGTTATTATTTCA+TGG | 0.318147 | 3_3:+37447559 | Msa0450930:exon |
| GAAGTATAAGCTTGATTAGT+AGG | 0.346896 | 3_3:-37448328 | None:intergenic |
| GTCGTCCCCTTCGGCTGATC+GGG | 0.347053 | 3_3:-37447690 | None:intergenic |
| CTGTTTATGCAGCAAGTACT+TGG | 0.358690 | 3_3:+37447857 | Msa0450930:CDS |
| AGCAAGTACTTGGCGGTGAT+TGG | 0.361938 | 3_3:+37447867 | Msa0450930:CDS |
| CTAGCCACATTGAAACAAAT+TGG | 0.364435 | 3_3:+37447899 | Msa0450930:CDS |
| CCAATCGCCTTCTTCTGCTT+TGG | 0.374720 | 3_3:+37446027 | Msa0450930:five_prime_UTR |
| CCGATGAGTGATCGGTGATA+TGG | 0.388214 | 3_3:-37446099 | None:intergenic |
| TCTTCTATGGAGCACGTTGT+AGG | 0.395510 | 3_3:+37447641 | Msa0450930:CDS |
| CGTCGTCCCCTTCGGCTGAT+CGG | 0.398819 | 3_3:-37447691 | None:intergenic |
| GACGAAGTTGTTGGCACAAA+AGG | 0.398912 | 3_3:+37447710 | Msa0450930:CDS |
| TGAGCTTATTGATGGGGATA+AGG | 0.407133 | 3_3:+37447982 | Msa0450930:CDS |
| GTTGTTGGTTATTATTTCAT+GGG | 0.409381 | 3_3:+37447560 | Msa0450930:exon |
| ACCGATCACTCATCGGAATC+CGG | 0.415091 | 3_3:+37446106 | Msa0450930:five_prime_UTR |
| CAGAGAAAGAAAAGAGAAAT+CGG | 0.429177 | 3_3:+37446058 | Msa0450930:five_prime_UTR |
| GAAAAGAGAAATCGGTTTGA+GGG | 0.431198 | 3_3:+37446066 | Msa0450930:five_prime_UTR |
| TCCATAGAAGATGAACTATT+AGG | 0.439662 | 3_3:-37447629 | None:intergenic |
| TTTAAAATCTATTGAGGAGG+AGG | 0.444056 | 3_3:-37448499 | None:intergenic |
| TCCTGCTTCATGTCACCCTC+TGG | 0.448042 | 3_3:+37448082 | Msa0450930:CDS |
| AGAAAAGAGAAATCGGTTTG+AGG | 0.450404 | 3_3:+37446065 | Msa0450930:five_prime_UTR |
| AAATCTTCCAAAATCAGCTC+TGG | 0.468825 | 3_3:-37448386 | None:intergenic |
| AGGCTCAACAAGTGACTTGA+TGG | 0.473288 | 3_3:+37447661 | Msa0450930:CDS |
| ACCAAGAGAATACATCGCTT+TGG | 0.476220 | 3_3:-37447768 | None:intergenic |
| TTAAAATCTATTGAGGAGGA+GGG | 0.486898 | 3_3:-37448498 | None:intergenic |
| TGTATCTAGGCAGTCTTTGG+AGG | 0.489612 | 3_3:+37447531 | Msa0450930:intron |
| TTCATGTCACCCTCTGGCCA+AGG | 0.491036 | 3_3:+37448088 | Msa0450930:CDS |
| AACAACTTCGTCGTCCCCTT+CGG | 0.491520 | 3_3:-37447699 | None:intergenic |
| GCAAGTACTTGGCGGTGATT+GGG | 0.500806 | 3_3:+37447868 | Msa0450930:CDS |
| AGAAGATGAAAGCATCGTTA+AGG | 0.501049 | 3_3:+37447925 | Msa0450930:CDS |
| ACCAAAGCGATGTATTCTCT+TGG | 0.502163 | 3_3:+37447767 | Msa0450930:CDS |
| GAACACCTAGAGGAGGAGTC+TGG | 0.502621 | 3_3:+37447806 | Msa0450930:CDS |
| TTCCTTGTGTCGCAACGCGT+TGG | 0.514667 | 3_3:+37448258 | Msa0450930:CDS |
| ATTTGTCAGTACTGCTGAAA+GGG | 0.515762 | 3_3:+37448405 | Msa0450930:CDS |
| TGTTTCTGATGATAACGAAT+CGG | 0.517284 | 3_3:+37448354 | Msa0450930:CDS |
| GCCAGAGGGTGACATGAAGC+AGG | 0.519258 | 3_3:-37448083 | None:intergenic |
| ATCCAACGCGTTGCGACACA+AGG | 0.527126 | 3_3:-37448260 | None:intergenic |
| TGCCCTTACAAAATCTCGCC+CGG | 0.534345 | 3_3:-37448119 | None:intergenic |
| TCGTCATGTTCAGATGACTT+TGG | 0.542727 | 3_3:+37448292 | Msa0450930:CDS |
| CCAAAGCAGAAGAAGGCGAT+TGG | 0.543283 | 3_3:-37446027 | None:intergenic |
| GAAGGGGACGACGAAGTTGT+TGG | 0.544222 | 3_3:+37447701 | Msa0450930:CDS |
| ACGAAGTTGTTGGCACAAAA+GGG | 0.550371 | 3_3:+37447711 | Msa0450930:CDS |
| TCAGGTATCATTACAGTCGA+GGG | 0.553135 | 3_3:-37448184 | None:intergenic |
| GTATGCCAGACTCCTCCTCT+AGG | 0.556041 | 3_3:-37447811 | None:intergenic |
| CAAGGAAGCTACTCGTTCCA+TGG | 0.556398 | 3_3:-37448242 | None:intergenic |
| AGCTACTCGTTCCATGGTGA+GGG | 0.556455 | 3_3:-37448236 | None:intergenic |
| TTCAGGTATCATTACAGTCG+AGG | 0.557702 | 3_3:-37448185 | None:intergenic |
| TTTATGCAGCAAGTACTTGG+CGG | 0.558318 | 3_3:+37447860 | Msa0450930:CDS |
| GCTCCGCCCCGATCAGCCGA+AGG | 0.562506 | 3_3:+37447683 | Msa0450930:CDS |
| GTTGGTTATTATTTCATGGG+AGG | 0.563350 | 3_3:+37447563 | Msa0450930:exon |
| TAAAATCTATTGAGGAGGAG+GGG | 0.564663 | 3_3:-37448497 | None:intergenic |
| TTATTATTTCATGGGAGGTG+TGG | 0.569082 | 3_3:+37447568 | Msa0450930:exon |
| CTGCTCCAATATTAAAAGTG+AGG | 0.572912 | 3_3:-37447951 | None:intergenic |
| AGCAGAAGAAGGCGATTGGA+TGG | 0.573629 | 3_3:-37446023 | None:intergenic |
| GAAGAACCACCTTGGCCAGA+GGG | 0.573757 | 3_3:-37448097 | None:intergenic |
| CTCCGCCCCGATCAGCCGAA+GGG | 0.575025 | 3_3:+37447684 | Msa0450930:CDS |
| AAGCTACTCGTTCCATGGTG+AGG | 0.576410 | 3_3:-37448237 | None:intergenic |
| GCCGGATTCCGATGAGTGAT+CGG | 0.577293 | 3_3:-37446107 | None:intergenic |
| GATTTGTCAGTACTGCTGAA+AGG | 0.578338 | 3_3:+37448404 | Msa0450930:CDS |
| GCACTTACCAAAGCAGAAGA+AGG | 0.586991 | 3_3:-37446034 | None:intergenic |
| CCATATCACCGATCACTCAT+CGG | 0.587861 | 3_3:+37446099 | Msa0450930:five_prime_UTR |
| ATGTCACCCTCTGGCCAAGG+TGG | 0.595449 | 3_3:+37448091 | Msa0450930:CDS |
| TCCGCCCCGATCAGCCGAAG+GGG | 0.596037 | 3_3:+37447685 | Msa0450930:CDS |
| AAAAGCGATCTGAAGTTCGC+CGG | 0.603308 | 3_3:-37446125 | None:intergenic |
| TATACCAATTTGTTTCAATG+TGG | 0.605452 | 3_3:-37447903 | None:intergenic |
| CTCGCCCGGAAGAACCACCT+TGG | 0.608997 | 3_3:-37448105 | None:intergenic |
| TCGTCCCCTTCGGCTGATCG+GGG | 0.610635 | 3_3:-37447689 | None:intergenic |
| TAATTTAAAATCTATTGAGG+AGG | 0.624087 | 3_3:-37448502 | None:intergenic |
| TTTACCGCAGACGAATTCAA+AGG | 0.627122 | 3_3:-37447833 | None:intergenic |
| GGAAGAACCACCTTGGCCAG+AGG | 0.628654 | 3_3:-37448098 | None:intergenic |
| TCCCCTTCGGCTGATCGGGG+CGG | 0.629349 | 3_3:-37447686 | None:intergenic |
| TGTCAGTACTGCTGAAAGGG+TGG | 0.632691 | 3_3:+37448408 | Msa0450930:CDS |
| TCGAGGCATTGAATACATTG+AGG | 0.634411 | 3_3:+37448008 | Msa0450930:CDS |
| CAGGTATCATTACAGTCGAG+GGG | 0.643753 | 3_3:-37448183 | None:intergenic |
| GAGTGGGGAACACCTAGAGG+AGG | 0.656225 | 3_3:+37447799 | Msa0450930:CDS |
| CATACCTTTGAATTCGTCTG+CGG | 0.656627 | 3_3:+37447829 | Msa0450930:CDS |
| AAATCGGTTGAAACTGCTGG+AGG | 0.679706 | 3_3:+37448144 | Msa0450930:CDS |
| AAAGAGTGGGGAACACCTAG+AGG | 0.683816 | 3_3:+37447796 | Msa0450930:CDS |
| AGTTGAACAAGCCCTCACCA+TGG | 0.691356 | 3_3:+37448225 | Msa0450930:CDS |
| TGATGGGGATAAGGTCATCG+AGG | 0.725311 | 3_3:+37447991 | Msa0450930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTTTTTTTT+TGG | - | chr3_3:37446480-37446499 | None:intergenic | 0.0% |
| !!! | TTCAATTTTTTACTTAATTT+AGG | + | chr3_3:37446296-37446315 | Msa0450930:intron | 10.0% |
| !!! | TCAATTTTTTACTTAATTTA+GGG | + | chr3_3:37446297-37446316 | Msa0450930:intron | 10.0% |
| !!! | AAGTTATTATTTTAGTTTTA+TGG | + | chr3_3:37447414-37447433 | Msa0450930:intron | 10.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr3_3:37446597-37446616 | Msa0450930:intron | 15.0% |
| !! | TATTAAGCCTTAATTATTTA+GGG | + | chr3_3:37446662-37446681 | Msa0450930:intron | 15.0% |
| !!! | AAAAAAAGAAAGTGTTTAAT+TGG | + | chr3_3:37446717-37446736 | Msa0450930:intron | 15.0% |
| !!! | AAAAAAGAAAGTGTTTAATT+GGG | + | chr3_3:37446718-37446737 | Msa0450930:intron | 15.0% |
| !! | ATAACTTCACAATAATAATA+AGG | - | chr3_3:37447401-37447420 | None:intergenic | 15.0% |
| !!! | AAGAAGAAAAGTATAAGAAT+CGG | - | chr3_3:37446204-37446223 | None:intergenic | 20.0% |
| !!! | TTCTTATACTTTTCTTCTTT+CGG | + | chr3_3:37446205-37446224 | Msa0450930:intron | 20.0% |
| !!! | AATTTAGGGTTTATGAATAT+AGG | + | chr3_3:37446311-37446330 | Msa0450930:intron | 20.0% |
| !!! | ATTTAGGGTTTATGAATATA+GGG | + | chr3_3:37446312-37446331 | Msa0450930:intron | 20.0% |
| !!! | TTTATTTTTTTTTTTGGCCT+GGG | - | chr3_3:37446474-37446493 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTTTTTTGGCC+TGG | - | chr3_3:37446475-37446494 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr3_3:37446596-37446615 | Msa0450930:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr3_3:37446598-37446617 | Msa0450930:intron | 20.0% |
| !! | CTATTAAGCCTTAATTATTT+AGG | + | chr3_3:37446661-37446680 | Msa0450930:intron | 20.0% |
| !!! | AGCATATTTTTAAAAGATCA+TGG | + | chr3_3:37447237-37447256 | Msa0450930:intron | 20.0% |
| !!! | GCATATTTTTAAAAGATCAT+GGG | + | chr3_3:37447238-37447257 | Msa0450930:intron | 20.0% |
| !!! | AAATTTTTTGAGCTTATTGA+TGG | + | chr3_3:37447974-37447993 | Msa0450930:CDS | 20.0% |
| !!! | AATTTTTTGAGCTTATTGAT+GGG | + | chr3_3:37447975-37447994 | Msa0450930:CDS | 20.0% |
| !! | TGGTATAGATATGTGTTTTA+CGG | - | chr3_3:37446006-37446025 | None:intergenic | 25.0% |
| ! | GTTTATGAATATAGGGTTTA+GGG | + | chr3_3:37446319-37446338 | Msa0450930:intron | 25.0% |
| !!! | TTATTTTTTTTTTTGGCCTG+GGG | - | chr3_3:37446473-37446492 | None:intergenic | 25.0% |
| ! | GCTTAATCCCTAAATAATTA+AGG | - | chr3_3:37446672-37446691 | None:intergenic | 25.0% |
| !! | TTGGTAATTATAAACTCAGA+TGG | + | chr3_3:37447058-37447077 | Msa0450930:intron | 25.0% |
| !! | AGTTTACATGTGTAATTTGT+TGG | + | chr3_3:37447096-37447115 | Msa0450930:intron | 25.0% |
| ! | AAAATATAACACTGTTAGAC+TGG | - | chr3_3:37447269-37447288 | None:intergenic | 25.0% |
| !! | TCTAACAGTGTTATATTTTG+AGG | + | chr3_3:37447270-37447289 | Msa0450930:intron | 25.0% |
| !!! | CTAACAGTGTTATATTTTGA+GGG | + | chr3_3:37447271-37447290 | Msa0450930:intron | 25.0% |
| ! | TTTGGTCATTAAAAAACTAG+AGG | + | chr3_3:37447332-37447351 | Msa0450930:intron | 25.0% |
| ! | TTGGTCATTAAAAAACTAGA+GGG | + | chr3_3:37447333-37447352 | Msa0450930:intron | 25.0% |
| ! | GTCTTTGTAAAGAAAACATA+CGG | + | chr3_3:37447357-37447376 | Msa0450930:intron | 25.0% |
| ! | TCTTTGTAAAGAAAACATAC+GGG | + | chr3_3:37447358-37447377 | Msa0450930:intron | 25.0% |
| !!! | AGCATTTTGAAACACATATT+TGG | - | chr3_3:37447444-37447463 | None:intergenic | 25.0% |
| ! | TCATGTAGAAATTTGTATCT+AGG | + | chr3_3:37447518-37447537 | Msa0450930:intron | 25.0% |
| !! | TGTTGTTGGTTATTATTTCA+TGG | + | chr3_3:37447559-37447578 | Msa0450930:exon | 25.0% |
| !! | GTTGTTGGTTATTATTTCAT+GGG | + | chr3_3:37447560-37447579 | Msa0450930:exon | 25.0% |
| !! | TATACCAATTTGTTTCAATG+TGG | - | chr3_3:37447906-37447925 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAGCTTATTGATG+GGG | + | chr3_3:37447976-37447995 | Msa0450930:CDS | 25.0% |
| !! | ATTTTGTAAGGGCAAAAAAT+CGG | + | chr3_3:37448128-37448147 | Msa0450930:CDS | 25.0% |
| ! | GGTATAGATATGTGTTTTAC+GGG | - | chr3_3:37446005-37446024 | None:intergenic | 30.0% |
| CAGAGAAAGAAAAGAGAAAT+CGG | + | chr3_3:37446058-37446077 | Msa0450930:five_prime_UTR | 30.0% | |
| AAAATGATCAAAGGACTTAC+CGG | - | chr3_3:37446160-37446179 | None:intergenic | 30.0% | |
| TAGGAAGTGAAAATGATCAA+AGG | - | chr3_3:37446169-37446188 | None:intergenic | 30.0% | |
| ! | TTTGATCATTTTCACTTCCT+AGG | + | chr3_3:37446168-37446187 | Msa0450930:intron | 30.0% |
| TTAATGCTAAGTTCTTGCTT+TGG | + | chr3_3:37446255-37446274 | Msa0450930:intron | 30.0% | |
| GGTTTATGAATATAGGGTTT+AGG | + | chr3_3:37446318-37446337 | Msa0450930:intron | 30.0% | |
| ! | AGGGTTTAGGGATTAATTTT+TGG | + | chr3_3:37446331-37446350 | Msa0450930:intron | 30.0% |
| !! | TTTGGCTTAATAGCAGTTTT+CGG | + | chr3_3:37446349-37446368 | Msa0450930:intron | 30.0% |
| !!! | TATTTTTTTTTTTGGCCTGG+GGG | - | chr3_3:37446472-37446491 | None:intergenic | 30.0% |
| AATGCTTTCAATTATGCAGA+CGG | - | chr3_3:37446973-37446992 | None:intergenic | 30.0% | |
| TTACACATGTAAACTCACAT+TGG | - | chr3_3:37447091-37447110 | None:intergenic | 30.0% | |
| ! | TAGCAATTAAGCAAGGTTTT+TGG | + | chr3_3:37447314-37447333 | Msa0450930:intron | 30.0% |
| TGGTCATTAAAAAACTAGAG+GGG | + | chr3_3:37447334-37447353 | Msa0450930:intron | 30.0% | |
| ! | AATTTCGTTCTTTTCAAAGC+TGG | - | chr3_3:37447605-37447624 | None:intergenic | 30.0% |
| ACCTAATAGTTCATCTTCTA+TGG | + | chr3_3:37447628-37447647 | Msa0450930:CDS | 30.0% | |
| TCCATAGAAGATGAACTATT+AGG | - | chr3_3:37447632-37447651 | None:intergenic | 30.0% | |
| AAAAGGGAGCTTAAAAAGAA+GGG | + | chr3_3:37447727-37447746 | Msa0450930:CDS | 30.0% | |
| TAAAAAGAAGGGAGTTTGTA+AGG | + | chr3_3:37447738-37447757 | Msa0450930:CDS | 30.0% | |
| ! | AGATGTTCTAATCTCTTTTC+AGG | - | chr3_3:37448205-37448224 | None:intergenic | 30.0% |
| GAAGTATAAGCTTGATTAGT+AGG | - | chr3_3:37448331-37448350 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATGATAACGAAT+CGG | + | chr3_3:37448354-37448373 | Msa0450930:CDS | 30.0% |
| !! | AGAAAAGAGAAATCGGTTTG+AGG | + | chr3_3:37446065-37446084 | Msa0450930:five_prime_UTR | 35.0% |
| !! | GAAAAGAGAAATCGGTTTGA+GGG | + | chr3_3:37446066-37446085 | Msa0450930:five_prime_UTR | 35.0% |
| ! | TTTGGATTGTTGTTGTTCAC+TGG | + | chr3_3:37446273-37446292 | Msa0450930:intron | 35.0% |
| TGCTACAGTTGCAAAACTTA+GGG | - | chr3_3:37446442-37446461 | None:intergenic | 35.0% | |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | + | chr3_3:37446446-37446465 | Msa0450930:intron | 35.0% |
| TAGCACGCTTGTAAAATTGT+TGG | + | chr3_3:37446692-37446711 | Msa0450930:intron | 35.0% | |
| AGCACGCTTGTAAAATTGTT+GGG | + | chr3_3:37446693-37446712 | Msa0450930:intron | 35.0% | |
| AACAAGATTCAATGTTGCGT+TGG | + | chr3_3:37447039-37447058 | Msa0450930:intron | 35.0% | |
| CAAAAGTGAAGCTTAAGTCA+GGG | - | chr3_3:37447195-37447214 | None:intergenic | 35.0% | |
| TCAAAAGTGAAGCTTAAGTC+AGG | - | chr3_3:37447196-37447215 | None:intergenic | 35.0% | |
| !! | TAAGCTTCACTTTTGAACCT+TGG | + | chr3_3:37447200-37447219 | Msa0450930:intron | 35.0% |
| !! | ACAGTGTTATATTTTGAGGG+AGG | + | chr3_3:37447274-37447293 | Msa0450930:intron | 35.0% |
| CTTAGTCTAGCAATTAAGCA+AGG | + | chr3_3:37447307-37447326 | Msa0450930:intron | 35.0% | |
| GGTCATTAAAAAACTAGAGG+GGG | + | chr3_3:37447335-37447354 | Msa0450930:intron | 35.0% | |
| TTGTAAAGAAAACATACGGG+AGG | + | chr3_3:37447361-37447380 | Msa0450930:intron | 35.0% | |
| ATTTGTATCTAGGCAGTCTT+TGG | + | chr3_3:37447528-37447547 | Msa0450930:intron | 35.0% | |
| GTTGGTTATTATTTCATGGG+AGG | + | chr3_3:37447563-37447582 | Msa0450930:exon | 35.0% | |
| TTATTATTTCATGGGAGGTG+TGG | + | chr3_3:37447568-37447587 | Msa0450930:exon | 35.0% | |
| CAAAAGGGAGCTTAAAAAGA+AGG | + | chr3_3:37447726-37447745 | Msa0450930:CDS | 35.0% | |
| TCTCTTGGTTACAAAAAGAG+TGG | + | chr3_3:37447782-37447801 | Msa0450930:CDS | 35.0% | |
| CTCTTGGTTACAAAAAGAGT+GGG | + | chr3_3:37447783-37447802 | Msa0450930:CDS | 35.0% | |
| TCTTGGTTACAAAAAGAGTG+GGG | + | chr3_3:37447784-37447803 | Msa0450930:CDS | 35.0% | |
| CTAGCCACATTGAAACAAAT+TGG | + | chr3_3:37447899-37447918 | Msa0450930:CDS | 35.0% | |
| !! | AGAAGATGAAAGCATCGTTA+AGG | + | chr3_3:37447925-37447944 | Msa0450930:CDS | 35.0% |
| CTGCTCCAATATTAAAAGTG+AGG | - | chr3_3:37447954-37447973 | None:intergenic | 35.0% | |
| AAAAAATCGGTTGAAACTGC+TGG | + | chr3_3:37448141-37448160 | Msa0450930:CDS | 35.0% | |
| AAATCTTCCAAAATCAGCTC+TGG | - | chr3_3:37448389-37448408 | None:intergenic | 35.0% | |
| ATTTGTCAGTACTGCTGAAA+GGG | + | chr3_3:37448405-37448424 | Msa0450930:CDS | 35.0% | |
| GTATAAGAATCGGAAACTGC+AGG | - | chr3_3:37446194-37446213 | None:intergenic | 40.0% | |
| ! | ATCGCAACTTGGTGAAAGTT+AGG | - | chr3_3:37446377-37446396 | None:intergenic | 40.0% |
| ! | CTTTCACCAAGTTGCGATTT+TGG | + | chr3_3:37446379-37446398 | Msa0450930:intron | 40.0% |
| TACAGACCAAAATCGCAACT+TGG | - | chr3_3:37446388-37446407 | None:intergenic | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr3_3:37446441-37446460 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | - | chr3_3:37446443-37446462 | None:intergenic | 40.0% | |
| AAAAATGTGGCACCTCACTT+AGG | + | chr3_3:37446498-37446517 | Msa0450930:intron | 40.0% | |
| AAAATGTGGCACCTCACTTA+GGG | + | chr3_3:37446499-37446518 | Msa0450930:intron | 40.0% | |
| AGACCGAGTCAAAATTGGTT+TGG | + | chr3_3:37446536-37446555 | Msa0450930:intron | 40.0% | |
| ! | GACCGAGTCAAAATTGGTTT+GGG | + | chr3_3:37446537-37446556 | Msa0450930:intron | 40.0% |
| !! | ACCGAGTCAAAATTGGTTTG+GGG | + | chr3_3:37446538-37446557 | Msa0450930:intron | 40.0% |
| !!! | TCCCCAAACCAATTTTGACT+CGG | - | chr3_3:37446542-37446561 | None:intergenic | 40.0% |
| ! | TTTTGCACATGTGGCAGTTT+TGG | - | chr3_3:37446565-37446584 | None:intergenic | 40.0% |
| TGCCACATGTGCAAAACTTA+AGG | + | chr3_3:37446569-37446588 | Msa0450930:intron | 40.0% | |
| GCCACATGTGCAAAACTTAA+GGG | + | chr3_3:37446570-37446589 | Msa0450930:intron | 40.0% | |
| CCACATGTGCAAAACTTAAG+GGG | + | chr3_3:37446571-37446590 | Msa0450930:intron | 40.0% | |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr3_3:37446624-37446643 | None:intergenic | 40.0% |
| ! | ATCGCAACTTTGGGAAAGTT+AGG | + | chr3_3:37446626-37446645 | Msa0450930:intron | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+GGG | + | chr3_3:37446627-37446646 | Msa0450930:intron | 40.0% |
| GCACGCTTGTAAAATTGTTG+GGG | + | chr3_3:37446694-37446713 | Msa0450930:intron | 40.0% | |
| ! | ACTCTGTCCGTCTTTTATGA+AGG | + | chr3_3:37447166-37447185 | Msa0450930:intron | 40.0% |
| !! | CTTCACTTTTGAACCTTGGT+AGG | + | chr3_3:37447204-37447223 | Msa0450930:intron | 40.0% |
| TAAAGAAAACATACGGGAGG+TGG | + | chr3_3:37447364-37447383 | Msa0450930:intron | 40.0% | |
| !!! | CTTTGGAGGCATTTTGTTGT+TGG | + | chr3_3:37447545-37447564 | Msa0450930:five_prime_UTR | 40.0% |
| ACGAAGTTGTTGGCACAAAA+GGG | + | chr3_3:37447711-37447730 | Msa0450930:CDS | 40.0% | |
| ACCAAAGCGATGTATTCTCT+TGG | + | chr3_3:37447767-37447786 | Msa0450930:CDS | 40.0% | |
| ACCAAGAGAATACATCGCTT+TGG | - | chr3_3:37447771-37447790 | None:intergenic | 40.0% | |
| CATACCTTTGAATTCGTCTG+CGG | + | chr3_3:37447829-37447848 | Msa0450930:CDS | 40.0% | |
| TTTACCGCAGACGAATTCAA+AGG | - | chr3_3:37447836-37447855 | None:intergenic | 40.0% | |
| CTGTTTATGCAGCAAGTACT+TGG | + | chr3_3:37447857-37447876 | Msa0450930:CDS | 40.0% | |
| TTTATGCAGCAAGTACTTGG+CGG | + | chr3_3:37447860-37447879 | Msa0450930:CDS | 40.0% | |
| !! | GGCTGCCTCACTTTTAATAT+TGG | + | chr3_3:37447946-37447965 | Msa0450930:CDS | 40.0% |
| TGAGCTTATTGATGGGGATA+AGG | + | chr3_3:37447982-37448001 | Msa0450930:CDS | 40.0% | |
| !! | TCGAGGCATTGAATACATTG+AGG | + | chr3_3:37448008-37448027 | Msa0450930:CDS | 40.0% |
| TCAGGTATCATTACAGTCGA+GGG | - | chr3_3:37448187-37448206 | None:intergenic | 40.0% | |
| TTCAGGTATCATTACAGTCG+AGG | - | chr3_3:37448188-37448207 | None:intergenic | 40.0% | |
| TCGTCATGTTCAGATGACTT+TGG | + | chr3_3:37448292-37448311 | Msa0450930:CDS | 40.0% | |
| !! | AACTTGTCCAGAGCTGATTT+TGG | + | chr3_3:37448379-37448398 | Msa0450930:CDS | 40.0% |
| GATTTGTCAGTACTGCTGAA+AGG | + | chr3_3:37448404-37448423 | Msa0450930:CDS | 40.0% | |
| GCACTTACCAAAGCAGAAGA+AGG | - | chr3_3:37446037-37446056 | None:intergenic | 45.0% | |
| CCATATCACCGATCACTCAT+CGG | + | chr3_3:37446099-37446118 | Msa0450930:five_prime_UTR | 45.0% | |
| ! | AAAAGCGATCTGAAGTTCGC+CGG | - | chr3_3:37446128-37446147 | None:intergenic | 45.0% |
| !! | GATCGCTTTTCTTGCTTCTC+CGG | + | chr3_3:37446138-37446157 | Msa0450930:five_prime_UTR | 45.0% |
| ACAGTTGCAAAACTTAGGGG+CGG | - | chr3_3:37446438-37446457 | None:intergenic | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr3_3:37446531-37446550 | Msa0450930:intron | 45.0% | |
| ! | CCCCTTAAGTTTTGCACATG+TGG | - | chr3_3:37446574-37446593 | None:intergenic | 45.0% |
| CATGTGCAAAACTTAAGGGG+TGG | + | chr3_3:37446574-37446593 | Msa0450930:intron | 45.0% | |
| ! | CGCAACTTTGGGAAAGTTAG+GGG | + | chr3_3:37446628-37446647 | Msa0450930:intron | 45.0% |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | + | chr3_3:37446629-37446648 | Msa0450930:intron | 45.0% |
| ! | AGGGCGTCCTTCATAAAAGA+CGG | - | chr3_3:37447176-37447195 | None:intergenic | 45.0% |
| GCTAGCATATCTTCCTACCA+AGG | - | chr3_3:37447220-37447239 | None:intergenic | 45.0% | |
| TGTATCTAGGCAGTCTTTGG+AGG | + | chr3_3:37447531-37447550 | Msa0450930:intron | 45.0% | |
| TCTTCTATGGAGCACGTTGT+AGG | + | chr3_3:37447641-37447660 | Msa0450930:CDS | 45.0% | |
| AGGCTCAACAAGTGACTTGA+TGG | + | chr3_3:37447661-37447680 | Msa0450930:CDS | 45.0% | |
| GACGAAGTTGTTGGCACAAA+AGG | + | chr3_3:37447710-37447729 | Msa0450930:CDS | 45.0% | |
| ! | TTCCGGGCGAGATTTTGTAA+GGG | + | chr3_3:37448117-37448136 | Msa0450930:CDS | 45.0% |
| AAATCGGTTGAAACTGCTGG+AGG | + | chr3_3:37448144-37448163 | Msa0450930:CDS | 45.0% | |
| CAGGTATCATTACAGTCGAG+GGG | - | chr3_3:37448186-37448205 | None:intergenic | 45.0% | |
| !! | AAAAATAAAAAAAAAAAATG+TGG | + | chr3_3:37446485-37446504 | Msa0450930:intron | 5.0% |
| AGCAGAAGAAGGCGATTGGA+TGG | - | chr3_3:37446026-37446045 | None:intergenic | 50.0% | |
| CCAAAGCAGAAGAAGGCGAT+TGG | - | chr3_3:37446030-37446049 | None:intergenic | 50.0% | |
| CCAATCGCCTTCTTCTGCTT+TGG | + | chr3_3:37446027-37446046 | Msa0450930:five_prime_UTR | 50.0% | |
| CCGATGAGTGATCGGTGATA+TGG | - | chr3_3:37446102-37446121 | None:intergenic | 50.0% | |
| ACCGATCACTCATCGGAATC+CGG | + | chr3_3:37446106-37446125 | Msa0450930:five_prime_UTR | 50.0% | |
| AGGGGCCAAAATCGCAACTT+TGG | + | chr3_3:37446616-37446635 | Msa0450930:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+GGG | + | chr3_3:37446617-37446636 | Msa0450930:intron | 50.0% | |
| ! | TTGTGCCACTCACTGCAACA+CGG | - | chr3_3:37446816-37446835 | None:intergenic | 50.0% |
| AACAACTTCGTCGTCCCCTT+CGG | - | chr3_3:37447702-37447721 | None:intergenic | 50.0% | |
| AAAGAGTGGGGAACACCTAG+AGG | + | chr3_3:37447796-37447815 | Msa0450930:CDS | 50.0% | |
| AGCAAGTACTTGGCGGTGAT+TGG | + | chr3_3:37447867-37447886 | Msa0450930:CDS | 50.0% | |
| GCAAGTACTTGGCGGTGATT+GGG | + | chr3_3:37447868-37447887 | Msa0450930:CDS | 50.0% | |
| TGATGGGGATAAGGTCATCG+AGG | + | chr3_3:37447991-37448010 | Msa0450930:CDS | 50.0% | |
| ! | CTTCCGGGCGAGATTTTGTA+AGG | + | chr3_3:37448116-37448135 | Msa0450930:CDS | 50.0% |
| TGCCCTTACAAAATCTCGCC+CGG | - | chr3_3:37448122-37448141 | None:intergenic | 50.0% | |
| AGTTGAACAAGCCCTCACCA+TGG | + | chr3_3:37448225-37448244 | Msa0450930:CDS | 50.0% | |
| AGCTACTCGTTCCATGGTGA+GGG | - | chr3_3:37448239-37448258 | None:intergenic | 50.0% | |
| AAGCTACTCGTTCCATGGTG+AGG | - | chr3_3:37448240-37448259 | None:intergenic | 50.0% | |
| CAAGGAAGCTACTCGTTCCA+TGG | - | chr3_3:37448245-37448264 | None:intergenic | 50.0% | |
| TGTCAGTACTGCTGAAAGGG+TGG | + | chr3_3:37448408-37448427 | Msa0450930:CDS | 50.0% | |
| GCCGGATTCCGATGAGTGAT+CGG | - | chr3_3:37446110-37446129 | None:intergenic | 55.0% | |
| GAATCGGAAACTGCAGGCCT+AGG | - | chr3_3:37446188-37446207 | None:intergenic | 55.0% | |
| CTGACGTAGCACCCTAAGTG+AGG | - | chr3_3:37446513-37446532 | None:intergenic | 55.0% | |
| GCAACACGGAACTGCGAAGT+CGG | - | chr3_3:37446802-37446821 | None:intergenic | 55.0% | |
| CAGTTCCGTGTTGCAGTGAG+TGG | + | chr3_3:37446808-37446827 | Msa0450930:intron | 55.0% | |
| GAAGGGGACGACGAAGTTGT+TGG | + | chr3_3:37447701-37447720 | Msa0450930:CDS | 55.0% | |
| GAACACCTAGAGGAGGAGTC+TGG | + | chr3_3:37447806-37447825 | Msa0450930:CDS | 55.0% | |
| GTATGCCAGACTCCTCCTCT+AGG | - | chr3_3:37447814-37447833 | None:intergenic | 55.0% | |
| TCCTGCTTCATGTCACCCTC+TGG | + | chr3_3:37448082-37448101 | Msa0450930:CDS | 55.0% | |
| TTCATGTCACCCTCTGGCCA+AGG | + | chr3_3:37448088-37448107 | Msa0450930:CDS | 55.0% | |
| GAAGAACCACCTTGGCCAGA+GGG | - | chr3_3:37448100-37448119 | None:intergenic | 55.0% | |
| TCTGGCCAAGGTGGTTCTTC+CGG | + | chr3_3:37448100-37448119 | Msa0450930:CDS | 55.0% | |
| TTCCTTGTGTCGCAACGCGT+TGG | + | chr3_3:37448258-37448277 | Msa0450930:CDS | 55.0% | |
| ATCCAACGCGTTGCGACACA+AGG | - | chr3_3:37448263-37448282 | None:intergenic | 55.0% | |
| GAGGAGGAGGGGTTCGAAAT+AGG | - | chr3_3:37448489-37448508 | None:intergenic | 55.0% | |
| !! | CTGTAGCAGTTTTGGCCCCC+AGG | + | chr3_3:37446454-37446473 | Msa0450930:intron | 60.0% |
| GAGTGGGGAACACCTAGAGG+AGG | + | chr3_3:37447799-37447818 | Msa0450930:CDS | 60.0% | |
| GCCAGAGGGTGACATGAAGC+AGG | - | chr3_3:37448086-37448105 | None:intergenic | 60.0% | |
| ATGTCACCCTCTGGCCAAGG+TGG | + | chr3_3:37448091-37448110 | Msa0450930:CDS | 60.0% | |
| GGAAGAACCACCTTGGCCAG+AGG | - | chr3_3:37448101-37448120 | None:intergenic | 60.0% | |
| CTGGCCAAGGTGGTTCTTCC+GGG | + | chr3_3:37448101-37448120 | Msa0450930:CDS | 60.0% | |
| TCGTCCCCTTCGGCTGATCG+GGG | - | chr3_3:37447692-37447711 | None:intergenic | 65.0% | |
| GTCGTCCCCTTCGGCTGATC+GGG | - | chr3_3:37447693-37447712 | None:intergenic | 65.0% | |
| CGTCGTCCCCTTCGGCTGAT+CGG | - | chr3_3:37447694-37447713 | None:intergenic | 65.0% | |
| CTCGCCCGGAAGAACCACCT+TGG | - | chr3_3:37448108-37448127 | None:intergenic | 65.0% | |
| CTCCGCCCCGATCAGCCGAA+GGG | + | chr3_3:37447684-37447703 | Msa0450930:CDS | 70.0% | |
| TCCGCCCCGATCAGCCGAAG+GGG | + | chr3_3:37447685-37447704 | Msa0450930:CDS | 70.0% | |
| TCCCCTTCGGCTGATCGGGG+CGG | - | chr3_3:37447689-37447708 | None:intergenic | 70.0% | |
| GCTCCGCCCCGATCAGCCGA+AGG | + | chr3_3:37447683-37447702 | Msa0450930:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 37445988 | 37448510 | 37445988 | ID=Msa0450930;Name=Msa0450930 |
| chr3_3 | mRNA | 37445988 | 37448510 | 37445988 | ID=Msa0450930-mRNA-1;Parent=Msa0450930;Name=Msa0450930-mRNA-1;_AED=0.08;_eAED=0.11;_QI=210|0|0.5|1|0|0|2|0|311 |
| chr3_3 | exon | 37445988 | 37446159 | 37445988 | ID=Msa0450930-mRNA-1:exon:6797;Parent=Msa0450930-mRNA-1 |
| chr3_3 | exon | 37447540 | 37448510 | 37447540 | ID=Msa0450930-mRNA-1:exon:6798;Parent=Msa0450930-mRNA-1 |
| chr3_3 | five_prime_UTR | 37445988 | 37446159 | 37445988 | ID=Msa0450930-mRNA-1:five_prime_utr;Parent=Msa0450930-mRNA-1 |
| chr3_3 | five_prime_UTR | 37447540 | 37447577 | 37447540 | ID=Msa0450930-mRNA-1:five_prime_utr;Parent=Msa0450930-mRNA-1 |
| chr3_3 | CDS | 37447578 | 37448510 | 37447578 | ID=Msa0450930-mRNA-1:cds;Parent=Msa0450930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
