AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0499420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499420 MtrunA17_Chr3g0097101 99.590 244 1 0 1 244 1 244 0.0 500
Msa0499420 MtrunA17_Chr8g0380021 62.449 245 90 2 1 244 1 244 6.20e-106 306
Msa0499420 MtrunA17_Chr2g0284911 59.023 266 81 4 1 244 1 260 7.86e-104 301
Msa0499420 MtrunA17_Chr3g0077501 59.565 230 83 3 16 243 1 222 1.78e-92 271
Msa0499420 MtrunA17_Chr8g0351051 50.877 171 84 0 16 186 1 171 3.90e-53 172
Msa0499420 MtrunA17_Chr8g0351031 44.340 212 110 3 16 221 1 210 1.13e-52 170
Msa0499420 MtrunA17_Chr5g0420091 47.701 174 90 1 16 188 1 174 6.80e-47 155
Msa0499420 MtrunA17_Chr7g0246431 40.670 209 124 0 16 224 1 209 1.22e-46 154
Msa0499420 MtrunA17_Chr7g0220111 42.793 222 116 5 16 229 1 219 6.64e-46 153
Msa0499420 MtrunA17_Chr8g0351041 53.793 145 62 2 16 157 1 143 1.08e-45 150
Msa0499420 MtrunA17_Chr2g0279821 49.359 156 77 2 16 170 1 155 3.43e-45 151
Msa0499420 MtrunA17_Chr8g0366231 47.312 186 91 2 16 197 1 183 4.05e-45 151
Msa0499420 MtrunA17_Chr4g0061691 44.048 168 93 1 16 182 1 168 5.56e-45 150
Msa0499420 MtrunA17_Chr6g0455511 41.071 224 118 5 16 229 1 220 5.50e-44 148
Msa0499420 MtrunA17_Chr3g0122251 43.519 216 110 6 16 223 1 212 2.06e-43 147
Msa0499420 MtrunA17_Chr5g0420081 40.952 210 108 4 16 212 1 207 2.91e-43 146
Msa0499420 MtrunA17_Chr4g0057151 41.361 191 110 1 16 204 1 191 3.07e-43 145
Msa0499420 MtrunA17_Chr5g0411691 45.087 173 89 2 16 186 1 169 6.83e-43 145
Msa0499420 MtrunA17_Chr4g0061671 45.349 172 91 2 16 186 1 170 1.82e-42 142
Msa0499420 MtrunA17_Chr4g0049541 46.980 149 77 2 16 164 1 147 2.71e-41 140
Msa0499420 MtrunA17_Chr4g0018421 39.698 199 110 5 16 211 1 192 7.83e-40 136
Msa0499420 MtrunA17_Chr7g0220121 43.575 179 95 4 16 192 1 175 1.13e-38 135
Msa0499420 MtrunA17_Chr1g0204111 40.230 174 103 1 16 188 17 190 6.24e-37 130
Msa0499420 MtrunA17_Chr6g0474371 41.618 173 99 2 16 186 1 173 1.51e-36 127
Msa0499420 MtrunA17_Chr4g0020221 42.632 190 103 3 16 201 1 188 2.59e-36 129
Msa0499420 MtrunA17_Chr5g0412461 42.857 175 94 2 16 187 1 172 7.16e-36 127
Msa0499420 MtrunA17_Chr5g0412271 41.899 179 90 2 16 187 1 172 5.85e-35 124
Msa0499420 MtrunA17_Chr5g0427401 40.116 172 101 1 16 187 1 170 1.03e-34 124
Msa0499420 MtrunA17_Chr3g0125241 44.218 147 75 2 16 160 26 167 4.11e-34 122
Msa0499420 MtrunA17_Chr4g0049901 38.043 184 110 2 16 196 27 209 2.98e-33 120
Msa0499420 MtrunA17_Chr1g0164791 38.824 170 97 3 16 179 1 169 2.40e-32 118
Msa0499420 MtrunA17_Chr1g0159661 42.177 147 78 2 16 160 1 142 1.59e-31 114
Msa0499420 MtrunA17_Chr3g0142191 38.857 175 91 4 16 183 1 166 1.75e-31 115
Msa0499420 MtrunA17_Chr5g0404951 38.265 196 103 5 16 203 1 186 7.39e-30 111
Msa0499420 MtrunA17_Chr7g0246381 73.770 61 16 0 16 76 1 61 7.60e-29 103
Msa0499420 MtrunA17_Chr8g0377561 79.310 58 12 0 16 73 1 58 3.23e-28 103
Msa0499420 MtrunA17_Chr2g0308251 63.768 69 25 0 16 84 1 69 4.54e-27 99.8
Msa0499420 MtrunA17_Chr1g0173161 73.333 60 16 0 16 75 1 60 6.54e-26 97.1
Msa0499420 MtrunA17_Chr5g0427921 65.000 60 21 0 16 75 1 60 1.23e-24 92.8
Msa0499420 MtrunA17_Chr5g0425191 70.690 58 17 0 16 73 1 58 4.54e-23 90.1
Msa0499420 MtrunA17_Chr3g0134451 62.857 70 25 1 16 84 1 70 4.90e-23 95.5
Msa0499420 MtrunA17_Chr4g0044071 67.241 58 19 0 16 73 1 58 2.64e-22 88.6
Msa0499420 MtrunA17_Chr2g0292791 44.340 106 49 1 11 106 3 108 2.03e-20 86.7
Msa0499420 MtrunA17_Chr3g0099411 37.662 154 72 4 11 146 3 150 1.45e-19 84.0
Msa0499420 MtrunA17_Chr2g0325971 50.000 74 37 0 11 84 3 76 2.54e-19 83.6
Msa0499420 MtrunA17_Chr3g0099421 52.703 74 35 0 11 84 28 101 2.56e-19 84.3
Msa0499420 MtrunA17_Chr2g0333981 36.667 120 64 3 13 122 8 125 2.83e-19 82.4
Msa0499420 MtrunA17_Chr1g0208561 45.238 84 46 0 11 94 3 86 3.80e-19 83.2
Msa0499420 MtrunA17_Chr3g0089141 45.238 84 46 0 11 94 3 86 4.34e-19 82.8
Msa0499420 MtrunA17_Chr1g0206721 42.453 106 51 1 11 106 3 108 4.51e-19 83.2
Msa0499420 MtrunA17_Chr1g0208581 50.000 74 37 0 11 84 3 76 1.43e-18 81.6
Msa0499420 MtrunA17_Chr5g0419601 39.450 109 60 2 11 119 3 105 1.76e-18 81.6
Msa0499420 MtrunA17_Chr8g0376821 53.623 69 32 0 16 84 1 69 2.26e-18 80.1
Msa0499420 MtrunA17_Chr1g0206991 41.509 106 52 1 11 106 3 108 2.26e-18 80.1
Msa0499420 MtrunA17_Chr1g0206701 51.351 74 36 0 11 84 3 76 2.35e-18 81.3
Msa0499420 MtrunA17_Chr8g0355091 41.509 106 52 1 11 106 3 108 2.63e-18 80.9
Msa0499420 MtrunA17_Chr1g0169761 42.268 97 56 0 16 112 1 97 2.92e-18 79.7
Msa0499420 MtrunA17_Chr8g0379021 37.097 124 62 4 13 124 8 127 4.51e-18 79.0
Msa0499420 MtrunA17_Chr1g0187361 48.649 74 38 0 11 84 3 76 6.14e-18 80.1
Msa0499420 MtrunA17_Chr1g0188671 37.391 115 71 1 11 124 41 155 6.17e-18 80.9
Msa0499420 MtrunA17_Chr1g0166611 43.617 94 44 1 28 121 17 101 7.21e-18 77.4
Msa0499420 MtrunA17_Chr1g0175601 41.509 106 59 1 16 118 1 106 2.32e-17 77.4
Msa0499420 MtrunA17_Chr1g0149391 47.297 74 39 0 11 84 3 76 3.69e-17 77.8
Msa0499420 MtrunA17_Chr4g0074101 49.275 69 35 0 16 84 1 69 5.71e-17 76.6
Msa0499420 MtrunA17_Chr1g0175611 50.704 71 35 0 16 86 1 71 6.54e-17 75.9
Msa0499420 MtrunA17_Chr2g0317481 45.946 74 40 0 11 84 3 76 7.52e-17 77.0
Msa0499420 MtrunA17_Chr2g0317451 45.946 74 40 0 11 84 3 76 7.59e-17 77.0
Msa0499420 MtrunA17_Chr8g0357771 49.275 69 35 0 16 84 1 69 2.22e-16 74.7
Msa0499420 MtrunA17_Chr5g0422421 45.946 74 40 0 11 84 3 76 2.95e-16 75.5
Msa0499420 MtrunA17_Chr5g0422941 45.946 74 40 0 11 84 3 76 3.17e-16 75.5
Msa0499420 MtrunA17_Chr4g0018951 36.090 133 80 2 13 140 8 140 3.21e-16 73.9
Msa0499420 MtrunA17_Chr1g0180591 49.275 69 35 0 16 84 1 69 4.03e-16 73.9
Msa0499420 MtrunA17_Chr4g0052081 33.333 138 86 2 16 147 1 138 7.25e-16 73.2
Msa0499420 MtrunA17_Chr5g0417661 54.386 57 26 0 12 68 52 108 9.23e-16 71.6
Msa0499420 MtrunA17_Chr3g0119901 46.377 69 37 0 16 84 8 76 1.67e-15 72.8
Msa0499420 MtrunA17_Chr3g0085241 43.243 74 42 0 11 84 35 108 2.58e-15 73.2
Msa0499420 MtrunA17_Chr4g0052061 28.481 158 106 1 16 166 1 158 2.68e-15 71.2
Msa0499420 MtrunA17_Chr8g0356071 46.377 69 37 0 16 84 1 69 3.98e-15 70.9
Msa0499420 MtrunA17_Chr2g0300441 43.750 80 43 1 17 94 7 86 5.65e-15 72.0
Msa0499420 MtrunA17_Chr3g0089151 45.946 74 40 0 11 84 3 76 6.20e-15 69.3
Msa0499420 MtrunA17_Chr2g0300421 45.946 74 40 0 11 84 3 76 6.45e-15 70.5
Msa0499420 MtrunA17_Chr4g0060841 54.717 53 24 0 16 68 1 53 1.35e-14 72.4
Msa0499420 MtrunA17_Chr2g0308271 32.540 126 83 1 75 198 32 157 5.12e-13 65.9
Msa0499420 MtrunA17_Chr1g0206691 43.478 69 39 0 26 94 1 69 1.02e-12 65.5
Msa0499420 MtrunA17_Chr5g0427961 40.000 90 52 2 75 164 4 91 9.80e-12 61.6
Msa0499420 MtrunA17_Chr4g0071601 35.246 122 67 3 13 124 8 127 9.80e-12 62.0
Msa0499420 MtrunA17_Chr1g0187351 45.763 59 32 0 26 84 1 59 1.88e-11 58.5
Msa0499420 MtrunA17_Chr3g0111841 44.068 59 33 0 23 81 2 60 3.57e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499420 AT3G58780.1 70.850 247 63 4 6 244 3 248 8.86e-120 342
Msa0499420 AT3G58780.5 70.850 247 63 4 6 244 9 254 1.37e-119 341
Msa0499420 AT2G42830.1 69.919 246 66 3 6 244 2 246 2.13e-118 338
Msa0499420 AT2G42830.2 69.355 248 66 4 6 244 2 248 1.08e-116 334
Msa0499420 AT3G58780.3 64.338 272 63 5 6 244 3 273 8.08e-114 327
Msa0499420 AT3G58780.4 62.500 280 63 5 6 244 3 281 1.16e-112 325
Msa0499420 AT3G58780.2 68.421 247 62 5 6 244 3 241 1.79e-112 323
Msa0499420 AT4G18960.1 63.008 246 82 4 7 244 8 252 5.31e-105 304
Msa0499420 AT4G09960.1 63.551 214 72 2 16 228 1 209 3.88e-94 276
Msa0499420 AT4G09960.6 63.551 214 72 2 16 228 2 210 4.28e-94 276
Msa0499420 AT4G09960.5 63.551 214 72 2 16 228 11 219 8.31e-94 275
Msa0499420 AT4G09960.3 63.256 215 73 2 15 228 26 235 1.60e-93 275
Msa0499420 AT4G09960.4 62.100 219 73 3 15 228 95 308 6.06e-91 271
Msa0499420 AT4G09960.2 60.280 214 65 3 16 228 1 195 9.24e-85 251
Msa0499420 AT4G18960.3 53.757 173 71 4 80 244 67 238 3.65e-53 172
Msa0499420 AT4G18960.2 53.757 173 71 4 80 244 67 238 3.65e-53 172
Msa0499420 AT2G45650.1 44.286 210 107 3 16 223 1 202 1.26e-51 168
Msa0499420 AT5G60910.1 45.355 183 99 1 16 197 1 183 1.55e-49 163
Msa0499420 AT2G45660.1 44.000 175 98 0 16 190 1 175 1.71e-47 157
Msa0499420 AT3G57230.1 47.742 155 80 1 16 170 1 154 2.75e-47 157
Msa0499420 AT3G57230.4 47.742 155 80 1 16 170 1 154 2.75e-47 157
Msa0499420 AT4G22950.2 47.368 171 89 1 16 186 1 170 9.26e-47 153
Msa0499420 AT3G57230.2 51.408 142 68 1 16 157 1 141 3.66e-46 151
Msa0499420 AT4G22950.3 47.647 170 88 1 16 185 1 169 5.21e-46 153
Msa0499420 AT4G22950.1 47.647 170 88 1 16 185 1 169 5.21e-46 153
Msa0499420 AT3G61120.1 41.981 212 121 1 16 227 1 210 1.95e-45 152
Msa0499420 AT1G26310.1 39.918 243 120 7 16 241 1 234 2.47e-45 152
Msa0499420 AT1G24260.1 45.641 195 100 3 16 207 1 192 4.21e-45 152
Msa0499420 AT1G69120.2 45.506 178 94 3 16 191 1 177 6.33e-45 150
Msa0499420 AT2G45660.2 46.358 151 81 0 16 166 1 151 9.43e-45 148
Msa0499420 AT1G24260.2 45.408 196 100 4 16 207 1 193 1.09e-44 150
Msa0499420 AT1G69120.1 45.506 178 94 3 16 191 1 177 3.43e-44 149
Msa0499420 AT5G62165.3 44.706 170 94 0 16 185 1 170 1.59e-43 146
Msa0499420 AT5G62165.1 44.706 170 94 0 16 185 1 170 1.59e-43 146
Msa0499420 AT5G62165.2 44.706 170 94 0 16 185 1 170 1.59e-43 146
Msa0499420 AT5G62165.10 47.170 159 83 1 16 173 1 159 3.72e-43 145
Msa0499420 AT5G62165.4 47.170 159 83 1 16 173 1 159 3.72e-43 145
Msa0499420 AT5G62165.17 49.296 142 72 0 16 157 1 142 4.81e-43 143
Msa0499420 AT5G62165.12 49.296 142 72 0 16 157 1 142 4.81e-43 143
Msa0499420 AT5G62165.11 49.296 142 72 0 16 157 1 142 4.81e-43 143
Msa0499420 AT5G62165.6 49.296 142 72 0 16 157 1 142 8.07e-43 142
Msa0499420 AT5G62165.9 49.296 142 72 0 16 157 1 142 8.07e-43 142
Msa0499420 AT5G62165.7 49.296 142 72 0 16 157 1 142 8.07e-43 142
Msa0499420 AT5G62165.8 49.296 142 72 0 16 157 1 142 8.07e-43 142
Msa0499420 AT5G62165.13 49.296 142 72 0 16 157 1 142 8.07e-43 142
Msa0499420 AT2G03710.3 44.253 174 94 2 16 187 1 173 1.14e-42 143
Msa0499420 AT2G03710.2 42.857 182 101 2 16 195 1 181 3.89e-42 144
Msa0499420 AT2G03710.1 42.857 182 101 2 16 195 1 181 4.30e-42 144
Msa0499420 AT5G15800.1 45.977 174 93 1 16 188 1 174 1.07e-41 143
Msa0499420 AT1G24260.3 48.750 160 78 3 16 171 1 160 1.10e-41 142
Msa0499420 AT5G15800.2 45.977 174 93 1 16 188 1 174 1.69e-41 142
Msa0499420 AT3G02310.1 45.977 174 93 1 16 188 1 174 1.90e-41 142
Msa0499420 AT4G18960.4 53.719 121 56 0 69 189 56 176 6.48e-41 139
Msa0499420 AT3G02310.2 46.784 171 90 1 16 185 1 171 7.63e-41 139
Msa0499420 AT4G37940.1 43.396 159 88 2 16 173 1 158 2.75e-40 139
Msa0499420 AT4G11880.2 45.860 157 83 2 16 171 1 156 5.72e-40 136
Msa0499420 AT4G11880.3 45.860 157 83 2 16 171 1 156 5.72e-40 136
Msa0499420 AT4G11880.4 48.299 147 74 2 16 161 1 146 1.01e-39 137
Msa0499420 AT4G11880.1 48.299 147 74 2 16 161 1 146 1.01e-39 137
Msa0499420 AT5G51860.2 43.678 174 97 1 16 188 1 174 6.96e-39 134
Msa0499420 AT4G37940.3 43.836 146 81 1 16 161 1 145 8.14e-39 133
Msa0499420 AT4G37940.4 45.070 142 77 1 16 157 1 141 1.46e-38 134
Msa0499420 AT2G22630.1 43.114 167 89 4 16 180 1 163 1.08e-37 132
Msa0499420 AT2G22630.2 43.114 167 89 4 16 180 1 163 1.08e-37 132
Msa0499420 AT5G51860.1 44.785 163 89 1 16 177 1 163 1.28e-37 131
Msa0499420 AT5G51870.4 42.347 196 105 5 16 208 1 191 1.93e-37 131
Msa0499420 AT5G51870.1 45.455 176 93 3 16 189 1 175 2.49e-37 130
Msa0499420 AT5G51870.3 42.347 196 105 5 16 208 11 201 3.02e-37 130
Msa0499420 AT5G51870.2 48.980 147 74 1 16 161 1 147 1.07e-36 127
Msa0499420 AT4G24540.1 41.436 181 100 2 16 193 1 178 1.29e-36 129
Msa0499420 AT5G51870.5 48.000 150 77 1 13 161 21 170 1.90e-36 127
Msa0499420 AT3G30260.1 44.231 156 76 3 16 165 1 151 4.96e-36 128
Msa0499420 AT5G13790.1 43.429 175 88 2 16 188 1 166 5.91e-36 129
Msa0499420 AT5G13790.2 43.182 176 90 2 16 188 1 169 1.02e-35 128
Msa0499420 AT2G22540.3 40.351 171 96 2 16 183 1 168 1.57e-35 127
Msa0499420 AT2G22540.1 40.351 171 96 2 16 183 1 168 1.57e-35 127
Msa0499420 AT2G14210.1 41.808 177 92 4 16 183 1 175 1.57e-34 124
Msa0499420 AT2G14210.2 41.808 177 92 4 16 183 1 175 2.03e-34 124
Msa0499420 AT5G20240.1 42.000 150 80 2 16 163 1 145 2.03e-32 117
Msa0499420 AT1G71692.1 39.560 182 102 2 16 189 1 182 2.06e-32 117
Msa0499420 AT5G62165.14 58.511 94 35 1 16 109 1 90 4.37e-32 114
Msa0499420 AT5G23260.4 39.086 197 107 4 9 197 6 197 1.93e-31 117
Msa0499420 AT2G22540.2 39.181 171 93 3 16 183 1 163 2.01e-31 116
Msa0499420 AT5G20240.2 42.958 142 74 2 16 155 1 137 3.89e-31 112
Msa0499420 AT5G23260.2 39.785 186 103 3 16 197 1 181 7.46e-31 115
Msa0499420 AT3G54340.1 40.994 161 82 4 16 171 1 153 1.52e-30 113
Msa0499420 AT3G57390.3 35.196 179 107 2 16 186 1 178 1.10e-29 111
Msa0499420 AT3G57390.1 35.196 179 107 2 16 186 1 178 2.14e-29 111
Msa0499420 AT5G23260.1 38.579 197 103 5 9 197 6 192 3.20e-29 110
Msa0499420 AT5G23260.3 39.247 186 90 4 16 197 1 167 1.09e-27 106
Msa0499420 AT5G65070.1 36.310 168 98 2 16 182 1 160 1.18e-25 100
Msa0499420 AT5G65050.2 35.632 174 101 3 16 187 1 165 1.60e-25 99.0
Msa0499420 AT5G10140.4 37.580 157 89 2 16 171 1 149 1.66e-25 99.4
Msa0499420 AT5G10140.1 38.816 152 84 2 16 166 1 144 2.72e-25 99.0
Msa0499420 AT5G65050.3 35.632 174 101 3 16 187 1 165 4.06e-25 98.6
Msa0499420 AT5G10140.2 38.816 152 84 2 16 166 1 144 4.46e-25 97.8
Msa0499420 AT5G65050.5 35.260 173 92 3 16 187 1 154 6.05e-25 97.8
Msa0499420 AT5G10140.3 38.816 152 84 2 16 166 1 144 7.11e-25 97.8
Msa0499420 AT5G65070.2 36.126 191 98 5 16 182 1 191 2.31e-24 97.4
Msa0499420 AT5G65080.3 39.623 159 83 5 16 171 8 156 4.63e-24 95.5
Msa0499420 AT5G65060.1 33.908 174 104 3 16 187 1 165 6.71e-24 95.5
Msa0499420 AT5G65060.3 33.908 174 104 3 16 187 1 165 6.84e-24 95.1
Msa0499420 AT5G65050.1 36.943 157 88 3 16 170 1 148 1.21e-23 94.4
Msa0499420 AT1G31140.1 39.073 151 83 3 16 161 1 147 2.31e-23 94.4
Msa0499420 AT5G65070.4 37.162 148 84 2 16 162 1 140 5.07e-23 91.7
Msa0499420 AT5G65070.5 36.111 180 91 5 16 171 1 180 5.55e-23 93.2
Msa0499420 AT5G65060.2 33.526 173 95 3 16 187 1 154 5.65e-23 92.8
Msa0499420 AT1G31140.2 38.710 155 80 4 16 161 1 149 8.39e-23 92.8
Msa0499420 AT1G77980.1 61.429 70 26 1 16 84 1 70 2.31e-22 94.0
Msa0499420 AT1G22130.1 75.926 54 13 0 16 69 1 54 2.76e-22 94.0
Msa0499420 AT5G65080.2 38.065 155 86 3 16 169 8 153 7.63e-22 90.1
Msa0499420 AT5G65070.3 62.712 59 22 0 16 74 1 59 2.79e-21 89.4
Msa0499420 AT1G77080.5 37.356 174 100 3 16 188 1 166 2.27e-20 85.5
Msa0499420 AT1G77080.11 36.994 173 100 3 16 187 1 165 8.61e-20 84.0
Msa0499420 AT1G77080.4 36.571 175 102 3 16 189 1 167 1.10e-19 84.3
Msa0499420 AT1G77950.3 52.857 70 32 1 16 84 1 70 1.62e-18 82.4
Msa0499420 AT1G77950.2 52.857 70 32 1 16 84 1 70 1.62e-18 82.4
Msa0499420 AT1G77950.1 52.857 70 32 1 16 84 1 70 1.62e-18 82.4
Msa0499420 AT1G77950.4 52.857 70 32 1 16 84 1 70 1.62e-18 82.4
Msa0499420 AT1G77080.2 35.028 177 98 3 16 189 1 163 2.47e-18 80.5
Msa0499420 AT1G77080.8 31.604 212 114 5 16 201 1 207 7.44e-18 79.7
Msa0499420 AT4G36590.1 41.880 117 60 3 17 133 7 115 1.90e-17 79.3
Msa0499420 AT1G65360.1 33.333 105 69 1 13 117 3 106 2.82e-17 78.6
Msa0499420 AT1G77080.12 36.478 159 84 3 16 171 1 145 8.43e-17 75.1
Msa0499420 AT1G18750.4 62.264 53 20 0 16 68 1 53 1.30e-16 78.6
Msa0499420 AT1G18750.1 62.264 53 20 0 16 68 1 53 1.56e-16 78.6
Msa0499420 AT1G18750.3 62.264 53 20 0 16 68 1 53 1.88e-16 78.2
Msa0499420 AT5G60440.1 37.069 116 59 2 13 126 3 106 2.09e-16 77.0
Msa0499420 AT1G01530.1 46.479 71 38 0 12 82 2 72 2.20e-16 76.3
Msa0499420 AT4G37435.1 57.895 57 24 0 16 72 1 57 2.79e-16 74.7
Msa0499420 AT2G34440.1 35.088 114 68 1 16 129 1 108 2.82e-16 74.3
Msa0499420 AT2G03060.2 30.476 210 109 8 16 206 1 192 5.88e-16 76.6
Msa0499420 AT2G03060.3 30.476 210 109 8 16 206 1 192 6.09e-16 76.6
Msa0499420 AT2G03060.7 30.476 210 109 8 16 206 1 192 6.09e-16 76.6
Msa0499420 AT2G03060.1 30.476 210 109 8 16 206 1 192 6.09e-16 76.6
Msa0499420 AT3G66656.1 47.143 70 37 0 16 85 1 70 7.98e-16 73.6
Msa0499420 AT1G72350.1 54.412 68 29 1 17 84 43 108 1.33e-15 73.9
Msa0499420 AT5G60910.2 33.333 117 78 0 81 197 5 121 5.77e-15 71.2
Msa0499420 AT2G24840.1 44.928 69 38 0 16 84 62 130 7.94e-15 72.4
Msa0499420 AT1G47760.1 44.737 76 42 0 16 91 1 76 2.35e-14 69.7
Msa0499420 AT3G04100.1 38.961 77 47 0 9 85 6 82 2.79e-14 69.7
Msa0499420 AT1G69540.1 30.723 166 86 5 16 181 1 137 6.49e-14 70.5
Msa0499420 AT1G69540.2 30.723 166 86 5 16 181 1 137 1.00e-13 70.1
Msa0499420 AT1G29962.1 43.836 73 41 0 12 84 3 75 2.28e-13 67.0
Msa0499420 AT1G28460.1 43.243 74 42 0 11 84 2 75 2.41e-13 66.6
Msa0499420 AT3G57230.5 33.962 106 65 2 69 170 16 120 2.48e-12 64.3
Msa0499420 AT3G57230.3 33.962 106 65 2 69 170 16 120 2.48e-12 64.3
Msa0499420 AT1G28450.1 39.189 74 45 0 11 84 2 75 1.16e-11 62.4

Find 46 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGCTTTGCAAAATA+TGG 0.168262 3_4:+37978043 Msa0499420:intron
TCGAATCTGCCTTCTCAATT+TGG 0.180584 3_4:-37983112 None:intergenic
AGGATCTTCTCAAAAGAAAA+TGG 0.218426 3_4:+37978088 Msa0499420:CDS
ATCTGATCCAAGCAGATTTA+CGG 0.335141 3_4:-37985057 None:intergenic
AGATACAGATTCTGCGTTAG+TGG 0.372608 3_4:-37982880 None:intergenic
GATTTACGGGAAAGAAATTT+CGG 0.378533 3_4:-37985043 None:intergenic
TCAATTTGGATGATTCTTGC+TGG 0.395773 3_4:-37983098 None:intergenic
CGGTCATATGCTTGTGATGA+AGG 0.400301 3_4:-37985023 None:intergenic
GATCCTTCTCCACCTTCATT+TGG 0.416333 3_4:-37978071 None:intergenic
GAGATATTCAGAATCTAAAT+AGG 0.416939 3_4:+37983133 Msa0499420:CDS
TCTGATCCAAGCAGATTTAC+GGG 0.422390 3_4:-37985056 None:intergenic
TTCTTTCCCGTAAATCTGCT+TGG 0.437872 3_4:+37985050 Msa0499420:CDS
AAAGAATCTCGAGGGTAGAT+TGG 0.440551 3_4:+37983288 Msa0499420:CDS
ACACAAGTTGGAGCGCAGTT+TGG 0.446128 3_4:-37985103 None:intergenic
TGATCACACATTGTTTGATC+TGG 0.450279 3_4:-37984993 None:intergenic
TGTATGAATATGCCAACAAC+AGG 0.477767 3_4:+37978267 Msa0499420:CDS
AAGCAGAGTTAGATCTAGAA+AGG 0.478447 3_4:+37983321 Msa0499420:CDS
GGATCTTCTCAAAAGAAAAT+GGG 0.486264 3_4:+37978089 Msa0499420:CDS
GGATTGAAAACACTACCAAT+AGG 0.493244 3_4:+37978135 Msa0499420:CDS
ATAGCTAGTGCAAATTCATA+AGG 0.498144 3_4:+37977697 Msa0499420:five_prime_UTR
TGTAAACTCAAACCTGTTGT+TGG 0.501282 3_4:-37978279 None:intergenic
TGAGACGTTGTTTGCTGATG+TGG 0.507873 3_4:+37984079 Msa0499420:CDS
ATATGCTTGTGATGAAGGTA+AGG 0.525429 3_4:-37985018 None:intergenic
CTCGAGGGTAGATTGGAGAA+AGG 0.529688 3_4:+37983295 Msa0499420:CDS
ATATGAATGCTTACACAAGT+TGG 0.536621 3_4:-37985115 None:intergenic
CTACCAAATGAAGGTGGAGA+AGG 0.538882 3_4:+37978068 Msa0499420:CDS
TCTCAAAAGAAAATGGGAAG+AGG 0.543069 3_4:+37978095 Msa0499420:CDS
GAGGGAAAATTGAAATCAAG+AGG 0.543111 3_4:+37978114 Msa0499420:CDS
ACTAGCTATATGTAGTTGCT+TGG 0.545871 3_4:-37977683 None:intergenic
CACATCCTTGGTGAAGCTCT+AGG 0.550741 3_4:+37983244 Msa0499420:CDS
CTTGTTGTCTTCTCCACTCG+TGG 0.551625 3_4:+37978239 Msa0499420:CDS
TAACAATTATCTACGAGCTA+AGG 0.555922 3_4:+37984785 Msa0499420:CDS
CTCAAAAGAAAATGGGAAGA+GGG 0.561170 3_4:+37978096 Msa0499420:CDS
TTCATACAAGCGACCACGAG+TGG 0.567368 3_4:-37978252 None:intergenic
AATATGGAGCTACCAAATGA+AGG 0.573967 3_4:+37978059 Msa0499420:exon
TGTATCTGAAGCTAATACCC+AGG 0.584785 3_4:+37982896 Msa0499420:CDS
AAGAATCATCCAAATTGAGA+AGG 0.597770 3_4:+37983103 Msa0499420:CDS
TGTGGAGTTCATGCAAAAGC+GGG 0.598411 3_4:+37984097 Msa0499420:CDS
CACGAGTGGAGAAGACAACA+AGG 0.599730 3_4:-37978238 None:intergenic
GTGTTAGAGCAACTATTGAA+AGG 0.619419 3_4:+37982835 Msa0499420:intron
CAAAGAACTAAAGAATCTCG+AGG 0.620859 3_4:+37983279 Msa0499420:CDS
ATGTGGAGTTCATGCAAAAG+CGG 0.623084 3_4:+37984096 Msa0499420:CDS
ATGGAGCTACCAAATGAAGG+TGG 0.637434 3_4:+37978062 Msa0499420:CDS
AAAGAACTAAAGAATCTCGA+GGG 0.657285 3_4:+37983280 Msa0499420:CDS
GAGATCCTAGAGCTTCACCA+AGG 0.715769 3_4:-37983249 None:intergenic
ACGAGTGGAGAAGACAACAA+GGG 0.733610 3_4:-37978237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAATTATATTTTTT+TGG + chr3_4:37983777-37983796 Msa0499420:intron 0.0%
!! ATAAAAATTTCATATTTCAA+TGG + chr3_4:37977933-37977952 Msa0499420:intron 10.0%
!!! TAAGTTTATTTTTATTTTTG+TGG + chr3_4:37978608-37978627 Msa0499420:intron 10.0%
!!! TTTTATAAAAAATAATTGTC+AGG + chr3_4:37980037-37980056 Msa0499420:intron 10.0%
!! ATAATTAACTTATTCATATA+AGG - chr3_4:37980348-37980367 None:intergenic 10.0%
!!! TAAAAAATTATCTATCATTT+TGG - chr3_4:37982600-37982619 None:intergenic 10.0%
!! CTTATTAATTATTTAATCAA+TGG - chr3_4:37983202-37983221 None:intergenic 10.0%
!!! TATAATTCTACATATTTTTT+TGG - chr3_4:37983367-37983386 None:intergenic 10.0%
!!! ATGTTAATTTTCATATTTTT+TGG - chr3_4:37983959-37983978 None:intergenic 10.0%
!!! ATTTAGAATTAATTAATTGA+CGG + chr3_4:37984615-37984634 Msa0499420:intron 10.0%
!! TAACTATATTTATTAAGCAA+TGG - chr3_4:37977728-37977747 None:intergenic 15.0%
!! AAACATTAAATGATTGAATA+AGG + chr3_4:37977981-37978000 Msa0499420:intron 15.0%
!! TGATAAATAAAAAAACTTTG+TGG + chr3_4:37978480-37978499 Msa0499420:intron 15.0%
!! GATAAATAAAAAAACTTTGT+GGG + chr3_4:37978481-37978500 Msa0499420:intron 15.0%
!! TATATTGAAAAAAGAACAAA+AGG - chr3_4:37978686-37978705 None:intergenic 15.0%
!!! TTGTTCTTTTTTCAATATAT+TGG + chr3_4:37978687-37978706 Msa0499420:intron 15.0%
!! TATAGATAAATTGATAAGAA+AGG - chr3_4:37979090-37979109 None:intergenic 15.0%
!! TTCTTATCAATTTATCTATA+AGG + chr3_4:37979090-37979109 Msa0499420:intron 15.0%
!!! TTTTACTAAAATTACTTGAA+GGG - chr3_4:37979148-37979167 None:intergenic 15.0%
!!! TTTTTACTAAAATTACTTGA+AGG - chr3_4:37979149-37979168 None:intergenic 15.0%
!!! TTGATTTTTCATTCTAAAAA+GGG + chr3_4:37979224-37979243 Msa0499420:intron 15.0%
!!! TGGAAACTTATTTAAATTTT+TGG + chr3_4:37979902-37979921 Msa0499420:intron 15.0%
!!! ATTTTTTTTTCTTTTCCAAT+TGG - chr3_4:37980989-37981008 None:intergenic 15.0%
!!! GATTTTGTTTATTTTTCTTT+TGG + chr3_4:37981282-37981301 Msa0499420:intron 15.0%
!!! TAAATAGTTTTTTGTTTGTT+TGG - chr3_4:37981609-37981628 None:intergenic 15.0%
!!! TTATCTTCAAAATTGTTTTT+AGG - chr3_4:37981695-37981714 None:intergenic 15.0%
!! AGTTATTAGTATTATTGAAT+TGG + chr3_4:37982222-37982241 Msa0499420:intron 15.0%
!! AACTTTAATAAATGAGAATA+AGG - chr3_4:37982696-37982715 None:intergenic 15.0%
!! TGTGAAATTTATTGATAAAA+TGG - chr3_4:37983447-37983466 None:intergenic 15.0%
!! TTGATTGTATATTAATTCTA+GGG - chr3_4:37983568-37983587 None:intergenic 15.0%
!!! TTCATTCTGTTTTTTTTTTT+TGG - chr3_4:37983695-37983714 None:intergenic 15.0%
!! AAAAGAAATAAAATCTAACA+AGG - chr3_4:37984029-37984048 None:intergenic 15.0%
!!! TTGTTAGATTTTATTTCTTT+TGG + chr3_4:37984028-37984047 Msa0499420:intron 15.0%
!! TACTTCAATAAGATATAATT+TGG + chr3_4:37984200-37984219 Msa0499420:intron 15.0%
!! ATGATGTTAATGTATATATT+TGG + chr3_4:37984271-37984290 Msa0499420:intron 15.0%
!!! GTTAATATATTGACTATAAA+TGG - chr3_4:37984300-37984319 None:intergenic 15.0%
!! TGAAATTAATTACATATGTA+GGG - chr3_4:37984358-37984377 None:intergenic 15.0%
!! TTGAAATTAATTACATATGT+AGG - chr3_4:37984359-37984378 None:intergenic 15.0%
!!! ATCATCCAATTTTAAATTAA+TGG + chr3_4:37984584-37984603 Msa0499420:intron 15.0%
!! AGAGAAGAATGAAAAATTTA+GGG - chr3_4:37977773-37977792 None:intergenic 20.0%
!! AAGAGAAGAATGAAAAATTT+AGG - chr3_4:37977774-37977793 None:intergenic 20.0%
!! AATGATTGAATAAGGAAATT+AGG + chr3_4:37977989-37978008 Msa0499420:intron 20.0%
!! ATGATTGAATAAGGAAATTA+GGG + chr3_4:37977990-37978009 Msa0499420:intron 20.0%
!!! ATCTTGATGTTTGTTATTAA+TGG + chr3_4:37978370-37978389 Msa0499420:intron 20.0%
!!! TTGTCAATTTTTTACTCTTT+TGG + chr3_4:37978566-37978585 Msa0499420:intron 20.0%
!! TGAAAAAAGGTTAATAGTAT+GGG - chr3_4:37978859-37978878 None:intergenic 20.0%
!! TTGAAAAAAGGTTAATAGTA+TGG - chr3_4:37978860-37978879 None:intergenic 20.0%
!! AAAGAAAAAGGATTGAAAAA+AGG - chr3_4:37978872-37978891 None:intergenic 20.0%
!!! CTTGATTTTTCATTCTAAAA+AGG + chr3_4:37979223-37979242 Msa0499420:intron 20.0%
!! AAAAGGGAATTGTAAAATAT+TGG + chr3_4:37979240-37979259 Msa0499420:intron 20.0%
!! TATTTACTTATAATAGTGAC+CGG + chr3_4:37979461-37979480 Msa0499420:intron 20.0%
!!! ACTTTTACAGATAATCATAT+AGG - chr3_4:37979650-37979669 None:intergenic 20.0%
!!! GATTTTATAGTTTTTCACTA+AGG + chr3_4:37979953-37979972 Msa0499420:intron 20.0%
!!! CAAAATACATTATTGATAGT+AGG - chr3_4:37980281-37980300 None:intergenic 20.0%
!!! CTACTATCAATAATGTATTT+TGG + chr3_4:37980279-37980298 Msa0499420:intron 20.0%
!! GAAATTAATGAAAAAGAGTA+CGG + chr3_4:37980508-37980527 Msa0499420:intron 20.0%
!! TCATGTATACAAATCTTTAA+AGG + chr3_4:37980612-37980631 Msa0499420:intron 20.0%
!! CATGTATACAAATCTTTAAA+GGG + chr3_4:37980613-37980632 Msa0499420:intron 20.0%
!! TGTTATATAAGAAGAGAAAA+AGG + chr3_4:37980653-37980672 Msa0499420:intron 20.0%
!! GTTATATAAGAAGAGAAAAA+GGG + chr3_4:37980654-37980673 Msa0499420:intron 20.0%
!! AACATCATTAATTACAGTAT+AGG + chr3_4:37980899-37980918 Msa0499420:intron 20.0%
!! ACATCATTAATTACAGTATA+GGG + chr3_4:37980900-37980919 Msa0499420:intron 20.0%
!!! TAGACTTTGTAATAGATTTT+GGG - chr3_4:37980928-37980947 None:intergenic 20.0%
!!! TTAGACTTTGTAATAGATTT+TGG - chr3_4:37980929-37980948 None:intergenic 20.0%
!!! TTTATTTTTCTTTTGGTGTA+TGG + chr3_4:37981289-37981308 Msa0499420:intron 20.0%
!!! TTTTGTCATGTATTTTTTCT+TGG - chr3_4:37981578-37981597 None:intergenic 20.0%
!! TTATCATGTTTATTCATTTG+TGG - chr3_4:37981735-37981754 None:intergenic 20.0%
!!! TGTCTCATAAGATTTTTAAT+TGG - chr3_4:37981788-37981807 None:intergenic 20.0%
!! TTGAAATTTACTTTCAGATA+AGG - chr3_4:37981940-37981959 None:intergenic 20.0%
!!! GTAGTTTTTTGGTTTTATTT+CGG + chr3_4:37982259-37982278 Msa0499420:intron 20.0%
!! CAAAAAAATCAAGACAATAT+AGG - chr3_4:37982557-37982576 None:intergenic 20.0%
!!! AGAAAGATTATCTATCATTT+TGG - chr3_4:37982642-37982661 None:intergenic 20.0%
!! TTTGCTTGGAAATATATATT+AGG - chr3_4:37982761-37982780 None:intergenic 20.0%
!! GTGAATAAATTTAATTACCT+GGG - chr3_4:37982916-37982935 None:intergenic 20.0%
!! TGTGAATAAATTTAATTACC+TGG - chr3_4:37982917-37982936 None:intergenic 20.0%
!! GAAATTTATTGATAAAATGG+TGG - chr3_4:37983444-37983463 None:intergenic 20.0%
!! GTTGATTGTATATTAATTCT+AGG - chr3_4:37983569-37983588 None:intergenic 20.0%
!!! CAAGACTTGATTATTTTTAA+GGG - chr3_4:37983642-37983661 None:intergenic 20.0%
!!! ACAAGACTTGATTATTTTTA+AGG - chr3_4:37983643-37983662 None:intergenic 20.0%
!! ACAAAAATAATATTTCCAGT+TGG + chr3_4:37983889-37983908 Msa0499420:intron 20.0%
!! CAAAAATAATATTTCCAGTT+GGG + chr3_4:37983890-37983909 Msa0499420:intron 20.0%
!!! AAACTATGACTTTTTTTTGA+AGG - chr3_4:37984003-37984022 None:intergenic 20.0%
!! TCAATAAGATATAATTTGGT+TGG + chr3_4:37984204-37984223 Msa0499420:intron 20.0%
!! ATGTGATAGTTAAACTTAAT+CGG - chr3_4:37984232-37984251 None:intergenic 20.0%
!! ATATATTCATATAGGGTATA+GGG - chr3_4:37984330-37984349 None:intergenic 20.0%
!! AATATATTCATATAGGGTAT+AGG - chr3_4:37984331-37984350 None:intergenic 20.0%
!!! CTGAACCATTAATTTAAAAT+TGG - chr3_4:37984592-37984611 None:intergenic 20.0%
!!! AAATTTTGTTGATAATTTGC+AGG + chr3_4:37984743-37984762 Msa0499420:intron 20.0%
!! ATATAAATGTGATTTCTCAA+TGG - chr3_4:37984852-37984871 None:intergenic 20.0%
!! TTTCATTCTTCTCTTTTTGA+TGG + chr3_4:37977779-37977798 Msa0499420:intron 25.0%
! AAAAAATCAAGAAGAAGAAG+TGG - chr3_4:37977859-37977878 None:intergenic 25.0%
! TTCATATTTCAATGGTTGAA+TGG + chr3_4:37977941-37977960 Msa0499420:intron 25.0%
!! TAAGAATCTTGAAGATTTTG+AGG - chr3_4:37978315-37978334 None:intergenic 25.0%
! AGAGTAAAAAATTGACAAAC+TGG - chr3_4:37978564-37978583 None:intergenic 25.0%
! CTGAAATAAGAGATAGAAAT+AGG + chr3_4:37978731-37978750 Msa0499420:intron 25.0%
!! AGAAGTAACAGCTTTAATTA+GGG + chr3_4:37978785-37978804 Msa0499420:intron 25.0%
! CATGGTTAATTACATATGTA+GGG - chr3_4:37978906-37978925 None:intergenic 25.0%
! TCATGGTTAATTACATATGT+AGG - chr3_4:37978907-37978926 None:intergenic 25.0%
! ATGTAATTAACCATGAAACT+TGG + chr3_4:37978911-37978930 Msa0499420:intron 25.0%
! TTCTTGTCCAATTGAAAATT+AGG + chr3_4:37978996-37979015 Msa0499420:intron 25.0%
! TCTTGTCCAATTGAAAATTA+GGG + chr3_4:37978997-37979016 Msa0499420:intron 25.0%
!! TTGAAACCCTAATTTTCAAT+TGG - chr3_4:37979006-37979025 None:intergenic 25.0%
!! CCTTTTAACAAAGATATGAA+GGG - chr3_4:37979053-37979072 None:intergenic 25.0%
! TTCCTTATAATAGTGATCAA+TGG - chr3_4:37979335-37979354 None:intergenic 25.0%
! CGTTCATTAATTGATGAATT+TGG + chr3_4:37979373-37979392 Msa0499420:intron 25.0%
!!! ATTTTTTCAAATAATCCCTC+CGG - chr3_4:37979483-37979502 None:intergenic 25.0%
! TCAAGATGTAATTATGAAAG+AGG + chr3_4:37979506-37979525 Msa0499420:intron 25.0%
! AATCATATAGGTACAGATAA+TGG - chr3_4:37979638-37979657 None:intergenic 25.0%
! AGATTAAATTTATGAAGGTG+GGG - chr3_4:37979685-37979704 None:intergenic 25.0%
! CAGATTAAATTTATGAAGGT+GGG - chr3_4:37979686-37979705 None:intergenic 25.0%
! ACAGATTAAATTTATGAAGG+TGG - chr3_4:37979687-37979706 None:intergenic 25.0%
! AGGACAGATTAAATTTATGA+AGG - chr3_4:37979690-37979709 None:intergenic 25.0%
!!! TTAATCTGTCCTTTAGAATA+TGG + chr3_4:37979698-37979717 Msa0499420:intron 25.0%
! TAGTATGAATTATGAGGTTA+TGG - chr3_4:37979881-37979900 None:intergenic 25.0%
! AACCTCATAATTCATACTAA+TGG + chr3_4:37979882-37979901 Msa0499420:intron 25.0%
! TTCCATTAGTATGAATTATG+AGG - chr3_4:37979887-37979906 None:intergenic 25.0%
!!! ATTTTTGGTCCAATATACTA+AGG + chr3_4:37979917-37979936 Msa0499420:intron 25.0%
!!! ATGATAGTGTTATTTTTCTG+CGG + chr3_4:37979990-37980009 Msa0499420:intron 25.0%
! TTCAATTTCTTTCATGCTTA+TGG + chr3_4:37980222-37980241 Msa0499420:intron 25.0%
! TATATAAGACTCATTGCAAA+AGG + chr3_4:37980365-37980384 Msa0499420:intron 25.0%
!! TCAACTTCAGAATTTTTCAT+TGG - chr3_4:37980535-37980554 None:intergenic 25.0%
!!! CATGATTTTTGTTTTAGCTT+CGG - chr3_4:37980597-37980616 None:intergenic 25.0%
!! GAAATTTTTGTTCATGAAAC+TGG - chr3_4:37980818-37980837 None:intergenic 25.0%
!!! TTTTTTTCTTTTCCAATTGG+TGG - chr3_4:37980986-37981005 None:intergenic 25.0%
!!! ACTAGGCTGTAAATATTTTT+TGG - chr3_4:37981189-37981208 None:intergenic 25.0%
! CTGTTACAACAGATAAAATA+AGG - chr3_4:37981397-37981416 None:intergenic 25.0%
!!! TTTTTTCTTGGTTATGAACA+GGG - chr3_4:37981566-37981585 None:intergenic 25.0%
!!! ATTTTTTCTTGGTTATGAAC+AGG - chr3_4:37981567-37981586 None:intergenic 25.0%
! AAAACTATTTAACCAGACAA+AGG + chr3_4:37981618-37981637 Msa0499420:intron 25.0%
!!! AGATTTTTAATTGGTTTGAG+TGG - chr3_4:37981779-37981798 None:intergenic 25.0%
! TGAAGGATTCTTCTTTATTA+GGG - chr3_4:37982074-37982093 None:intergenic 25.0%
! TTGAAGGATTCTTCTTTATT+AGG - chr3_4:37982075-37982094 None:intergenic 25.0%
! ATAAAATCTACTAAGTTAGG+TGG - chr3_4:37982112-37982131 None:intergenic 25.0%
! GGAATAAAATCTACTAAGTT+AGG - chr3_4:37982115-37982134 None:intergenic 25.0%
! ATGAGAAACAATGATTGATA+AGG - chr3_4:37982330-37982349 None:intergenic 25.0%
! ATAAATGAGAATAAGGAAAC+TGG - chr3_4:37982689-37982708 None:intergenic 25.0%
! GAGATATTCAGAATCTAAAT+AGG + chr3_4:37983133-37983152 Msa0499420:CDS 25.0%
! AACAATATGACAATCATTCA+AGG + chr3_4:37983586-37983605 Msa0499420:intron 25.0%
! AAAGTTTGTAATAGCTAGTT+TGG + chr3_4:37983732-37983751 Msa0499420:intron 25.0%
!!! TGATTAGCCTTAAATTTCTT+TGG + chr3_4:37983822-37983841 Msa0499420:intron 25.0%
!!! GATTAGCCTTAAATTTCTTT+GGG + chr3_4:37983823-37983842 Msa0499420:intron 25.0%
!! TAGCTTTTTATATTTGCAGT+TGG + chr3_4:37983847-37983866 Msa0499420:intron 25.0%
!! AGCTTTTTATATTTGCAGTT+GGG + chr3_4:37983848-37983867 Msa0499420:intron 25.0%
! AGAAATAAAATCTAACAAGG+AGG - chr3_4:37984026-37984045 None:intergenic 25.0%
! TGTGATAGTTAAACTTAATC+GGG - chr3_4:37984231-37984250 None:intergenic 25.0%
! GGTCGAAATATATTCATATA+GGG - chr3_4:37984337-37984356 None:intergenic 25.0%
! ACTTTACTGTATAGAAAAGA+CGG + chr3_4:37984492-37984511 Msa0499420:intron 25.0%
ATAGCTAGTGCAAATTCATA+AGG + chr3_4:37977697-37977716 Msa0499420:five_prime_UTR 30.0%
AAGGAAATTAGGGATTAACT+TGG + chr3_4:37978000-37978019 Msa0499420:intron 30.0%
TTTCACAGCTTTGCAAAATA+TGG + chr3_4:37978043-37978062 Msa0499420:intron 30.0%
AGGATCTTCTCAAAAGAAAA+TGG + chr3_4:37978088-37978107 Msa0499420:CDS 30.0%
GGATCTTCTCAAAAGAAAAT+GGG + chr3_4:37978089-37978108 Msa0499420:CDS 30.0%
AAAACTTTGTGGGATTTATG+AGG + chr3_4:37978491-37978510 Msa0499420:intron 30.0%
! CAGAAGTAACAGCTTTAATT+AGG + chr3_4:37978784-37978803 Msa0499420:intron 30.0%
TTAGGGTTAGAAAGATTTCT+AGG + chr3_4:37978802-37978821 Msa0499420:intron 30.0%
GAAAGAGAGAGAAAAGAAAA+AGG - chr3_4:37978884-37978903 None:intergenic 30.0%
!! AATGATGATGGAAATGAAGA+GGG - chr3_4:37978974-37978993 None:intergenic 30.0%
ACAAAGATATGAAGGGATTA+TGG - chr3_4:37979046-37979065 None:intergenic 30.0%
CCCTTCATATCTTTGTTAAA+AGG + chr3_4:37979050-37979069 Msa0499420:intron 30.0%
! GCCTTTTAACAAAGATATGA+AGG - chr3_4:37979054-37979073 None:intergenic 30.0%
CTCCATTGATCACTATTATA+AGG + chr3_4:37979330-37979349 Msa0499420:intron 30.0%
AACTACAGACCATATTCTAA+AGG - chr3_4:37979710-37979729 None:intergenic 30.0%
TTAGAATATGGTCTGTAGTT+AGG + chr3_4:37979710-37979729 Msa0499420:intron 30.0%
TAGAATATGGTCTGTAGTTA+GGG + chr3_4:37979711-37979730 Msa0499420:intron 30.0%
TTCCACAACAAATTAACTTC+TGG + chr3_4:37979778-37979797 Msa0499420:intron 30.0%
!! TACCAGAAGTTAATTTGTTG+TGG - chr3_4:37979783-37979802 None:intergenic 30.0%
! CTTTGTTGTCCTTAGTATAT+TGG - chr3_4:37979929-37979948 None:intergenic 30.0%
!!! TGATAGTGTTATTTTTCTGC+GGG + chr3_4:37979991-37980010 Msa0499420:intron 30.0%
! GAAAAGCATAAGAAAGAGAA+GGG - chr3_4:37980205-37980224 None:intergenic 30.0%
! TGAAAAGCATAAGAAAGAGA+AGG - chr3_4:37980206-37980225 None:intergenic 30.0%
AACTTCATATACACAAGTTG+AGG + chr3_4:37980424-37980443 Msa0499420:intron 30.0%
!! CAAATCTTTAAAGGGTATTG+TGG + chr3_4:37980621-37980640 Msa0499420:intron 30.0%
TGTTATTACACCATGTTGAA+TGG + chr3_4:37980690-37980709 Msa0499420:intron 30.0%
!! TTTGTTTCTACTCTTCCTAT+GGG + chr3_4:37981012-37981031 Msa0499420:intron 30.0%
TTCAATCATTACTGAGAAGA+CGG + chr3_4:37981082-37981101 Msa0499420:intron 30.0%
GTCACATATATTCATAACCA+GGG + chr3_4:37981104-37981123 Msa0499420:intron 30.0%
!!! AGGCTGTAAATATTTTTTGG+AGG - chr3_4:37981186-37981205 None:intergenic 30.0%
TACTATACCAAAGCAAACAA+CGG - chr3_4:37981365-37981384 None:intergenic 30.0%
!!! ATACAATGTGTTTTGGAAAG+GGG - chr3_4:37981491-37981510 None:intergenic 30.0%
!!! CATACAATGTGTTTTGGAAA+GGG - chr3_4:37981492-37981511 None:intergenic 30.0%
!!! TCATACAATGTGTTTTGGAA+AGG - chr3_4:37981493-37981512 None:intergenic 30.0%
! CTCATTCATACAATGTGTTT+TGG - chr3_4:37981498-37981517 None:intergenic 30.0%
TTCCATTACCCAATTATAGA+AGG + chr3_4:37981646-37981665 Msa0499420:intron 30.0%
!!! TGTTTTTAGGTAGATCCTTT+GGG - chr3_4:37981682-37981701 None:intergenic 30.0%
!!! TTGTTTTTAGGTAGATCCTT+TGG - chr3_4:37981683-37981702 None:intergenic 30.0%
! AAAAAGAGTTGTTTGAGACT+CGG + chr3_4:37981972-37981991 Msa0499420:intron 30.0%
CGAGATTATTGAAGATGATT+TGG - chr3_4:37982017-37982036 None:intergenic 30.0%
TTATCCAATCTAACTCAGAT+TGG - chr3_4:37982047-37982066 None:intergenic 30.0%
ATCTGAGTTAGATTGGATAA+AGG + chr3_4:37982047-37982066 Msa0499420:intron 30.0%
ATCCAAATATGCTTCTAATG+GGG - chr3_4:37982152-37982171 None:intergenic 30.0%
GATCCAAATATGCTTCTAAT+GGG - chr3_4:37982153-37982172 None:intergenic 30.0%
ATGTCTCGAAGCTTATTAAT+CGG - chr3_4:37982175-37982194 None:intergenic 30.0%
!! TATTGAATTGGTAGTGTTCT+AGG + chr3_4:37982234-37982253 Msa0499420:intron 30.0%
!!! TGTTCTAGGTAGTAGTTTTT+TGG + chr3_4:37982248-37982267 Msa0499420:intron 30.0%
AGAAAAGGAACGAAAAATAC+TGG - chr3_4:37982431-37982450 None:intergenic 30.0%
! AAATGCAGCTAATTTTTGCT+TGG - chr3_4:37982775-37982794 None:intergenic 30.0%
CCTTGTGGATGATAATTATA+TGG - chr3_4:37983041-37983060 None:intergenic 30.0%
CCATATAATTATCATCCACA+AGG + chr3_4:37983038-37983057 Msa0499420:intron 30.0%
CTTGCTGGTAAAACTAATAT+TGG - chr3_4:37983086-37983105 None:intergenic 30.0%
AAGAATCATCCAAATTGAGA+AGG + chr3_4:37983103-37983122 Msa0499420:CDS 30.0%
ATTCAGAATCTAAATAGGTC+AGG + chr3_4:37983138-37983157 Msa0499420:intron 30.0%
AAAGAACTAAAGAATCTCGA+GGG + chr3_4:37983280-37983299 Msa0499420:CDS 30.0%
ATGATGAGATTTATCATCCA+AGG + chr3_4:37983484-37983503 Msa0499420:intron 30.0%
TGATGAGATTTATCATCCAA+GGG + chr3_4:37983485-37983504 Msa0499420:intron 30.0%
AGCTAACCCAAAGAAATTTA+AGG - chr3_4:37983832-37983851 None:intergenic 30.0%
!!! CTATGACTTTTTTTTGAAGG+AGG - chr3_4:37984000-37984019 None:intergenic 30.0%
GGGTCGAAATATATTCATAT+AGG - chr3_4:37984338-37984357 None:intergenic 30.0%
TTAAACGTTGTAGAAGATCT+TGG - chr3_4:37984673-37984692 None:intergenic 30.0%
AGTCTTTGAATGTATCTAAC+AGG - chr3_4:37984715-37984734 None:intergenic 30.0%
TAACAATTATCTACGAGCTA+AGG + chr3_4:37984785-37984804 Msa0499420:CDS 30.0%
GAGAAATCACATTTATATGC+AGG + chr3_4:37984854-37984873 Msa0499420:intron 30.0%
GATTTACGGGAAAGAAATTT+CGG - chr3_4:37985046-37985065 None:intergenic 30.0%
ACTAGCTATATGTAGTTGCT+TGG - chr3_4:37977686-37977705 None:intergenic 35.0%
GGCAAGATTTGAAAGAAACA+AGG - chr3_4:37977752-37977771 None:intergenic 35.0%
AATCAAGAAGAAGAAGTGGT+TGG - chr3_4:37977855-37977874 None:intergenic 35.0%
AATATGGAGCTACCAAATGA+AGG + chr3_4:37978059-37978078 Msa0499420:exon 35.0%
TCTCAAAAGAAAATGGGAAG+AGG + chr3_4:37978095-37978114 Msa0499420:CDS 35.0%
CTCAAAAGAAAATGGGAAGA+GGG + chr3_4:37978096-37978115 Msa0499420:CDS 35.0%
GAGGGAAAATTGAAATCAAG+AGG + chr3_4:37978114-37978133 Msa0499420:CDS 35.0%
GGATTGAAAACACTACCAAT+AGG + chr3_4:37978135-37978154 Msa0499420:CDS 35.0%
TGTATGAATATGCCAACAAC+AGG + chr3_4:37978267-37978286 Msa0499420:CDS 35.0%
TGTAAACTCAAACCTGTTGT+TGG - chr3_4:37978282-37978301 None:intergenic 35.0%
AACTGGAGTTTGAGGAAAAT+TGG - chr3_4:37978547-37978566 None:intergenic 35.0%
AATTGACAAACTGGAGTTTG+AGG - chr3_4:37978555-37978574 None:intergenic 35.0%
! GCAGATTTTTCCAAGTTTCA+TGG - chr3_4:37978924-37978943 None:intergenic 35.0%
!! GAATGATGATGGAAATGAAG+AGG - chr3_4:37978975-37978994 None:intergenic 35.0%
TGGACAAGAAAGAATGATGA+TGG - chr3_4:37978986-37979005 None:intergenic 35.0%
AACATGTTCTCAATGCTGTT+AGG + chr3_4:37979288-37979307 Msa0499420:intron 35.0%
TTACTTATAATAGTGACCGG+AGG + chr3_4:37979464-37979483 Msa0499420:intron 35.0%
TACTTATAATAGTGACCGGA+GGG + chr3_4:37979465-37979484 Msa0499420:intron 35.0%
! CTTATAAATCCATGCTGGTT+AGG - chr3_4:37979740-37979759 None:intergenic 35.0%
TTGTGGAAAACAATGAGTCA+TGG - chr3_4:37979766-37979785 None:intergenic 35.0%
!!! GATAGTGTTATTTTTCTGCG+GGG + chr3_4:37979992-37980011 Msa0499420:intron 35.0%
TATTACACCATGTTGAATGG+TGG + chr3_4:37980693-37980712 Msa0499420:intron 35.0%
! TTGAGAGCCAATGACAATTT+TGG + chr3_4:37980744-37980763 Msa0499420:intron 35.0%
! TGAGAGCCAATGACAATTTT+GGG + chr3_4:37980745-37980764 Msa0499420:intron 35.0%
CAAAGACCCAAAATTGTCAT+TGG - chr3_4:37980754-37980773 None:intergenic 35.0%
!! CAATGACAATTTTGGGTCTT+TGG + chr3_4:37980752-37980771 Msa0499420:intron 35.0%
ATACAATGAAGACATGTGTG+TGG + chr3_4:37980954-37980973 Msa0499420:intron 35.0%
TACAATGAAGACATGTGTGT+GGG + chr3_4:37980955-37980974 Msa0499420:intron 35.0%
!! CTTTGTTTCTACTCTTCCTA+TGG + chr3_4:37981011-37981030 Msa0499420:intron 35.0%
ATGATCTCGAATTAACCCAT+AGG - chr3_4:37981030-37981049 None:intergenic 35.0%
TTGAAATACCCCATGTAGAT+CGG - chr3_4:37981067-37981086 None:intergenic 35.0%
GGTCACATATATTCATAACC+AGG + chr3_4:37981103-37981122 Msa0499420:intron 35.0%
ATAGGAACTGGTATGTTAGT+GGG - chr3_4:37981216-37981235 None:intergenic 35.0%
!!! TGTTGCTGTTTCGGTATTTT+GGG + chr3_4:37981256-37981275 Msa0499420:intron 35.0%
!! TCTTTTGGTGTATGGCTTTT+TGG + chr3_4:37981297-37981316 Msa0499420:intron 35.0%
AAAGGACACAGCAGAAAAAA+AGG - chr3_4:37981341-37981360 None:intergenic 35.0%
GTTGTTTGCTTTGGTATAGT+AGG + chr3_4:37981364-37981383 Msa0499420:intron 35.0%
! AATGAGCCTCATTTTACTTC+CGG + chr3_4:37981512-37981531 Msa0499420:intron 35.0%
AATGGAATCATTCCTTTGTC+TGG - chr3_4:37981633-37981652 None:intergenic 35.0%
CACCTTCTATAATTGGGTAA+TGG - chr3_4:37981651-37981670 None:intergenic 35.0%
TCCTTGCACCTTCTATAATT+GGG - chr3_4:37981657-37981676 None:intergenic 35.0%
TTCCTTGCACCTTCTATAAT+TGG - chr3_4:37981658-37981677 None:intergenic 35.0%
CTGATCATGCAAATTGTGTT+TGG - chr3_4:37981872-37981891 None:intergenic 35.0%
GCAAAATCTTCTTCATTGAG+GGG - chr3_4:37981907-37981926 None:intergenic 35.0%
GGCAAAATCTTCTTCATTGA+GGG - chr3_4:37981908-37981927 None:intergenic 35.0%
TGGCAAAATCTTCTTCATTG+AGG - chr3_4:37981909-37981928 None:intergenic 35.0%
! TTTCAGATAAGGCATCTACT+TGG - chr3_4:37981929-37981948 None:intergenic 35.0%
AGAACCAATCTGAGTTAGAT+TGG + chr3_4:37982040-37982059 Msa0499420:intron 35.0%
GGTAAGATCTTCTTCATTGA+AGG - chr3_4:37982091-37982110 None:intergenic 35.0%
TTCTAATGGGGAGATTTGAA+AGG - chr3_4:37982140-37982159 None:intergenic 35.0%
GGATCCAAATATGCTTCTAA+TGG - chr3_4:37982154-37982173 None:intergenic 35.0%
ATAAGCTTCGAGACATTCTA+AGG + chr3_4:37982179-37982198 Msa0499420:intron 35.0%
TTGTGTCTTTATCTCGATTC+AGG + chr3_4:37982461-37982480 Msa0499420:intron 35.0%
TGTGTCTTTATCTCGATTCA+GGG + chr3_4:37982462-37982481 Msa0499420:intron 35.0%
GTGTTAGAGCAACTATTGAA+AGG + chr3_4:37982835-37982854 Msa0499420:intron 35.0%
TCAATTTGGATGATTCTTGC+TGG - chr3_4:37983101-37983120 None:intergenic 35.0%
CAAAGAACTAAAGAATCTCG+AGG + chr3_4:37983279-37983298 Msa0499420:CDS 35.0%
AAGCAGAGTTAGATCTAGAA+AGG + chr3_4:37983321-37983340 Msa0499420:CDS 35.0%
ACAAATCTATTGTCTACCCT+TGG - chr3_4:37983504-37983523 None:intergenic 35.0%
!!! TGACTTTTTTTTGAAGGAGG+AGG - chr3_4:37983997-37984016 None:intergenic 35.0%
! CTGTATAGAAAAGACGGATT+TGG + chr3_4:37984498-37984517 Msa0499420:intron 35.0%
CCAAATATGTAACTGTGTCA+CGG - chr3_4:37984564-37984583 None:intergenic 35.0%
ACGATGATGATAAAAAGCTG+TGG + chr3_4:37984915-37984934 Msa0499420:intron 35.0%
GATGATAAAAAGCTGTGGAA+TGG + chr3_4:37984920-37984939 Msa0499420:intron 35.0%
TGATCACACATTGTTTGATC+TGG - chr3_4:37984996-37985015 None:intergenic 35.0%
ATATGCTTGTGATGAAGGTA+AGG - chr3_4:37985021-37985040 None:intergenic 35.0%
ATCTGATCCAAGCAGATTTA+CGG - chr3_4:37985060-37985079 None:intergenic 35.0%
! GCAAAAAGTGACTTGCCTAT+TGG - chr3_4:37978153-37978172 None:intergenic 40.0%
! ACTTTTTGCAAACGACGCAA+TGG + chr3_4:37978164-37978183 Msa0499420:CDS 40.0%
GGACACTTATAAATCCATGC+TGG - chr3_4:37979745-37979764 None:intergenic 40.0%
AGTGTTACGTTAGATGCAGA+GGG - chr3_4:37980145-37980164 None:intergenic 40.0%
TAGTGTTACGTTAGATGCAG+AGG - chr3_4:37980146-37980165 None:intergenic 40.0%
! AGAGAAGGGTTCTTTTCTTG+TGG - chr3_4:37980191-37980210 None:intergenic 40.0%
!! AAAGGGTATTGTGGTAATCG+AGG + chr3_4:37980630-37980649 Msa0499420:intron 40.0%
!! TTTTGGGTCTTTGGCAAGTT+AGG + chr3_4:37980761-37980780 Msa0499420:intron 40.0%
ACCACTTAATCCGATCTACA+TGG + chr3_4:37981054-37981073 Msa0499420:intron 40.0%
CCACTTAATCCGATCTACAT+GGG + chr3_4:37981055-37981074 Msa0499420:intron 40.0%
CACTTAATCCGATCTACATG+GGG + chr3_4:37981056-37981075 Msa0499420:intron 40.0%
CATATATTCATAACCAGGGC+CGG + chr3_4:37981108-37981127 Msa0499420:intron 40.0%
TAGGAACTGGTATGTTAGTG+GGG - chr3_4:37981215-37981234 None:intergenic 40.0%
CATAGGAACTGGTATGTTAG+TGG - chr3_4:37981217-37981236 None:intergenic 40.0%
AAAGCATGCTACAACAGCAT+AGG - chr3_4:37981234-37981253 None:intergenic 40.0%
!! ATGCTTTGCTGTTGCTGTTT+CGG + chr3_4:37981247-37981266 Msa0499420:intron 40.0%
!!! CTGTTGCTGTTTCGGTATTT+TGG + chr3_4:37981255-37981274 Msa0499420:intron 40.0%
! TTTGGTTTCTTTCCTGTTGC+TGG + chr3_4:37981315-37981334 Msa0499420:intron 40.0%
TTTGCTTTGGTATAGTAGGC+TGG + chr3_4:37981368-37981387 Msa0499420:intron 40.0%
TTGCTTTGGTATAGTAGGCT+GGG + chr3_4:37981369-37981388 Msa0499420:intron 40.0%
! ACCCAATTATAGAAGGTGCA+AGG + chr3_4:37981653-37981672 Msa0499420:intron 40.0%
!! TAATTGGTTTGAGTGGACGA+TGG - chr3_4:37981772-37981791 None:intergenic 40.0%
! CATGCAAATTGTGTTTGGTG+TGG - chr3_4:37981867-37981886 None:intergenic 40.0%
AATGGGGAGATTTGAAAGGA+GGG - chr3_4:37982136-37982155 None:intergenic 40.0%
TAATGGGGAGATTTGAAAGG+AGG - chr3_4:37982137-37982156 None:intergenic 40.0%
! CTCCCCATTAGAAGCATATT+TGG + chr3_4:37982147-37982166 Msa0499420:intron 40.0%
CACAAACACTACGCTAGAAA+AGG - chr3_4:37982446-37982465 None:intergenic 40.0%
CATTTCTTGTGCGTTGGATT+GGG + chr3_4:37982485-37982504 Msa0499420:intron 40.0%
ATTTCTTGTGCGTTGGATTG+GGG + chr3_4:37982486-37982505 Msa0499420:intron 40.0%
AGATACAGATTCTGCGTTAG+TGG - chr3_4:37982883-37982902 None:intergenic 40.0%
! TGTATCTGAAGCTAATACCC+AGG + chr3_4:37982896-37982915 Msa0499420:CDS 40.0%
TCGAATCTGCCTTCTCAATT+TGG - chr3_4:37983115-37983134 None:intergenic 40.0%
! TTTTTCTGCAGACACATCCT+TGG + chr3_4:37983232-37983251 Msa0499420:intron 40.0%
AAAGAATCTCGAGGGTAGAT+TGG + chr3_4:37983288-37983307 Msa0499420:CDS 40.0%
ATGTGGAGTTCATGCAAAAG+CGG + chr3_4:37984096-37984115 Msa0499420:CDS 40.0%
CCGTGACACAGTTACATATT+TGG + chr3_4:37984561-37984580 Msa0499420:intron 40.0%
TTCTTTCCCGTAAATCTGCT+TGG + chr3_4:37985050-37985069 Msa0499420:CDS 40.0%
TCTGATCCAAGCAGATTTAC+GGG - chr3_4:37985059-37985078 None:intergenic 40.0%
ATGGAGCTACCAAATGAAGG+TGG + chr3_4:37978062-37978081 Msa0499420:CDS 45.0%
CTACCAAATGAAGGTGGAGA+AGG + chr3_4:37978068-37978087 Msa0499420:CDS 45.0%
GATCCTTCTCCACCTTCATT+TGG - chr3_4:37978074-37978093 None:intergenic 45.0%
ACGAGTGGAGAAGACAACAA+GGG - chr3_4:37978240-37978259 None:intergenic 45.0%
!! GAGTGCATGACAGCTTTTTC+TGG - chr3_4:37978946-37978965 None:intergenic 45.0%
TTAGGGTTTCCTAACCAGCA+TGG + chr3_4:37979728-37979747 Msa0499420:intron 45.0%
TGTCAGTCCACCATTCAACA+TGG - chr3_4:37980703-37980722 None:intergenic 45.0%
GTGTGGGTAAATCCACCAAT+TGG + chr3_4:37980971-37980990 Msa0499420:intron 45.0%
CCCATGTAGATCGGATTAAG+TGG - chr3_4:37981058-37981077 None:intergenic 45.0%
!! TTTTTGGAGGCCCATACCTT+GGG - chr3_4:37981173-37981192 None:intergenic 45.0%
!!! TTTTTTGGAGGCCCATACCT+TGG - chr3_4:37981174-37981193 None:intergenic 45.0%
AGGAACTGGTATGTTAGTGG+GGG - chr3_4:37981214-37981233 None:intergenic 45.0%
TGCTACAACAGCATAGGAAC+TGG - chr3_4:37981228-37981247 None:intergenic 45.0%
!!! TGCTGTTTCGGTATTTTGGG+AGG + chr3_4:37981259-37981278 Msa0499420:intron 45.0%
!! GCTGTTTCGGTATTTTGGGA+GGG + chr3_4:37981260-37981279 Msa0499420:intron 45.0%
CAGAAAAAAAGGCCAGCAAC+AGG - chr3_4:37981330-37981349 None:intergenic 45.0%
TCCTTTGCCGTTGTTTGCTT+TGG + chr3_4:37981355-37981374 Msa0499420:intron 45.0%
ACCAAAGCAAACAACGGCAA+AGG - chr3_4:37981359-37981378 None:intergenic 45.0%
! TTTGCCATTTAGTGCACTCC+TGG + chr3_4:37981417-37981436 Msa0499420:intron 45.0%
! TATTTCAAGTGCCAAGCACC+AGG - chr3_4:37981438-37981457 None:intergenic 45.0%
TTCCAACGAATTTGGAGGCT+CGG - chr3_4:37981540-37981559 None:intergenic 45.0%
AGCCTCCAAATTCGTTGGAA+CGG + chr3_4:37981540-37981559 Msa0499420:intron 45.0%
GCATTTCTTGTGCGTTGGAT+TGG + chr3_4:37982484-37982503 Msa0499420:intron 45.0%
GTGTTAGTGTGTCAACCTTG+TGG - chr3_4:37983056-37983075 None:intergenic 45.0%
CAAATCAGAGCTAACCCAAC+TGG - chr3_4:37983907-37983926 None:intergenic 45.0%
!! CAGTTGGGTTAGCTCTGATT+TGG + chr3_4:37983905-37983924 Msa0499420:intron 45.0%
! TGAGACGTTGTTTGCTGATG+TGG + chr3_4:37984079-37984098 Msa0499420:CDS 45.0%
TGTGGAGTTCATGCAAAAGC+GGG + chr3_4:37984097-37984116 Msa0499420:CDS 45.0%
CACGGAGTTACTTGATAGGA+GGG - chr3_4:37984527-37984546 None:intergenic 45.0%
TCACGGAGTTACTTGATAGG+AGG - chr3_4:37984528-37984547 None:intergenic 45.0%
ACGTCACGGAGTTACTTGAT+AGG - chr3_4:37984531-37984550 None:intergenic 45.0%
TATCAAGTAACTCCGTGACG+TGG + chr3_4:37984530-37984549 Msa0499420:intron 45.0%
ACGGATCTTTAACCACGTCA+CGG - chr3_4:37984545-37984564 None:intergenic 45.0%
CGGTCATATGCTTGTGATGA+AGG - chr3_4:37985026-37985045 None:intergenic 45.0%
!! ACAAATAAATTATAATTAAT+TGG - chr3_4:37983803-37983822 None:intergenic 5.0%
CACGAGTGGAGAAGACAACA+AGG - chr3_4:37978241-37978260 None:intergenic 50.0%
! CTTGTTGTCTTCTCCACTCG+TGG + chr3_4:37978239-37978258 Msa0499420:CDS 50.0%
TTCATACAAGCGACCACGAG+TGG - chr3_4:37978255-37978274 None:intergenic 50.0%
!! TTTTGGAGGCCCATACCTTG+GGG - chr3_4:37981172-37981191 None:intergenic 50.0%
!! GTATGTTAGTGGGGGGTACT+AGG - chr3_4:37981206-37981225 None:intergenic 50.0%
GGAACTGGTATGTTAGTGGG+GGG - chr3_4:37981213-37981232 None:intergenic 50.0%
! AGCACCAGGAGTGCACTAAA+TGG - chr3_4:37981424-37981443 None:intergenic 50.0%
TTTAGTGCACTCCTGGTGCT+TGG + chr3_4:37981424-37981443 Msa0499420:intron 50.0%
!! TCGGTGCCGGAAGTAAAATG+AGG - chr3_4:37981521-37981540 None:intergenic 50.0%
! GAAGGTGCAAGGAAACCCAA+AGG + chr3_4:37981664-37981683 Msa0499420:intron 50.0%
! TCAGGGCATTTCTTGTGCGT+TGG + chr3_4:37982479-37982498 Msa0499420:intron 50.0%
CACATCCTTGGTGAAGCTCT+AGG + chr3_4:37983244-37983263 Msa0499420:CDS 50.0%
GAGATCCTAGAGCTTCACCA+AGG - chr3_4:37983252-37983271 None:intergenic 50.0%
CTCGAGGGTAGATTGGAGAA+AGG + chr3_4:37983295-37983314 Msa0499420:CDS 50.0%
CAGCAAACAACGTCTCATGC+TGG - chr3_4:37984076-37984095 None:intergenic 50.0%
! ACACAAGTTGGAGCGCAGTT+TGG - chr3_4:37985106-37985125 None:intergenic 50.0%
CACCGAGCCTCCAAATTCGT+TGG + chr3_4:37981535-37981554 Msa0499420:intron 55.0%
GGCCGTTCCAACGAATTTGG+AGG - chr3_4:37981545-37981564 None:intergenic 55.0%
CAGGGCCGTTCCAACGAATT+TGG - chr3_4:37981548-37981567 None:intergenic 55.0%
GCAAGCAGCGCTATAGCACC+AGG + chr3_4:37981143-37981162 Msa0499420:intron 60.0%
TATAGCACCAGGCCTCCCCA+AGG + chr3_4:37981154-37981173 Msa0499420:intron 60.0%
ACCAGGCCTCCCCAAGGTAT+GGG + chr3_4:37981160-37981179 Msa0499420:intron 60.0%
!! CGAATTTGGAGGCTCGGTGC+CGG - chr3_4:37981534-37981553 None:intergenic 60.0%
TCATAACCAGGGCCGGACCC+TGG + chr3_4:37981115-37981134 Msa0499420:intron 65.0%
CATAACCAGGGCCGGACCCT+GGG + chr3_4:37981116-37981135 Msa0499420:intron 65.0%
ATAACCAGGGCCGGACCCTG+GGG + chr3_4:37981117-37981136 Msa0499420:intron 65.0%
CACCAGGCCTCCCCAAGGTA+TGG + chr3_4:37981159-37981178 Msa0499420:intron 65.0%
TGGAGGCCCATACCTTGGGG+AGG - chr3_4:37981169-37981188 None:intergenic 65.0%
TAACCAGGGCCGGACCCTGG+GGG + chr3_4:37981118-37981137 Msa0499420:intron 70.0%
TGCTTGCACCCCCCAGGGTC+CGG - chr3_4:37981130-37981149 None:intergenic 70.0%
AGCGCTGCTTGCACCCCCCA+GGG - chr3_4:37981135-37981154 None:intergenic 70.0%
TAGCGCTGCTTGCACCCCCC+AGG - chr3_4:37981136-37981155 None:intergenic 70.0%
GCCCATACCTTGGGGAGGCC+TGG - chr3_4:37981164-37981183 None:intergenic 70.0%
AACCAGGGCCGGACCCTGGG+GGG + chr3_4:37981119-37981138 Msa0499420:intron 75.0%
! CACCCCCCAGGGTCCGGCCC+TGG - chr3_4:37981124-37981143 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 37977670 37985127 37977670 ID=Msa0499420;Name=Msa0499420
chr3_4 mRNA 37977670 37985127 37977670 ID=Msa0499420-mRNA-1;Parent=Msa0499420;Name=Msa0499420-mRNA-1;_AED=0.14;_eAED=0.14;_QI=60|1|0.87|1|0.85|0.75|8|0|244
chr3_4 exon 37977670 37977718 37977670 ID=Msa0499420-mRNA-1:exon:7828;Parent=Msa0499420-mRNA-1
chr3_4 exon 37978051 37978288 37978051 ID=Msa0499420-mRNA-1:exon:7829;Parent=Msa0499420-mRNA-1
chr3_4 exon 37982836 37982917 37982836 ID=Msa0499420-mRNA-1:exon:7830;Parent=Msa0499420-mRNA-1
chr3_4 exon 37983093 37983154 37983093 ID=Msa0499420-mRNA-1:exon:7831;Parent=Msa0499420-mRNA-1
chr3_4 exon 37983243 37983342 37983243 ID=Msa0499420-mRNA-1:exon:7832;Parent=Msa0499420-mRNA-1
chr3_4 exon 37984077 37984118 37984077 ID=Msa0499420-mRNA-1:exon:7833;Parent=Msa0499420-mRNA-1
chr3_4 exon 37984765 37984806 37984765 ID=Msa0499420-mRNA-1:exon:7834;Parent=Msa0499420-mRNA-1
chr3_4 exon 37984948 37985127 37984948 ID=Msa0499420-mRNA-1:exon:7835;Parent=Msa0499420-mRNA-1
chr3_4 five_prime_UTR 37977670 37977718 37977670 ID=Msa0499420-mRNA-1:five_prime_utr;Parent=Msa0499420-mRNA-1
chr3_4 five_prime_UTR 37978051 37978061 37978051 ID=Msa0499420-mRNA-1:five_prime_utr;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37978062 37978288 37978062 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37982836 37982917 37982836 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37983093 37983154 37983093 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37983243 37983342 37983243 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37984077 37984118 37984077 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37984765 37984806 37984765 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
chr3_4 CDS 37984948 37985127 37984948 ID=Msa0499420-mRNA-1:cds;Parent=Msa0499420-mRNA-1
Gene Sequence

>Msa0499420

ATGGAGCTACCAAATGAAGGTGGAGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACTTTTTGCAAACGACGCAATGGATTGTTGAAGAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCCACTCGTGGTCGCTTGTATGAATATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCTTGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGGCAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTAGGATCTCTGAGTCTCAAAGAACTAAAGAATCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAATCATAACAATTATCTACGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAAAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCACAAGCATATGACCGAAATTTCTTTCCCGTAAATCTGCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCGCTCCAACTTGTGTAA
Protein sequence

>Msa0499420

MELPNEGGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLV*