Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500890 | XP_003603015.1 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500890 | sp|O48723|PLP2_ARATH | 63.772 | 403 | 142 | 2 | 1 | 403 | 3 | 401 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500890 | G7J6A9 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0500830 | Msa0500890 | 0.876624 | 1.204092e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500890 | MtrunA17_Chr3g0133691 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Msa0500890 | MtrunA17_Chr3g0133681 | 91.176 | 408 | 36 | 0 | 1 | 408 | 1 | 408 | 0.0 | 753 |
| Msa0500890 | MtrunA17_Chr1g0153781 | 78.272 | 405 | 86 | 2 | 4 | 406 | 5 | 409 | 0.0 | 674 |
| Msa0500890 | MtrunA17_Chr5g0402441 | 54.523 | 398 | 173 | 4 | 4 | 399 | 3 | 394 | 5.39e-156 | 446 |
| Msa0500890 | MtrunA17_Chr5g0402451 | 55.614 | 383 | 166 | 3 | 18 | 397 | 8 | 389 | 1.76e-155 | 444 |
| Msa0500890 | MtrunA17_Chr8g0335581 | 44.472 | 398 | 188 | 11 | 10 | 396 | 11 | 386 | 2.35e-102 | 310 |
| Msa0500890 | MtrunA17_Chr8g0335611 | 43.687 | 396 | 194 | 11 | 10 | 396 | 22 | 397 | 7.68e-99 | 301 |
| Msa0500890 | MtrunA17_Chr8g0335621 | 43.687 | 396 | 194 | 11 | 10 | 396 | 53 | 428 | 1.28e-98 | 301 |
| Msa0500890 | MtrunA17_Chr8g0335651 | 47.044 | 389 | 176 | 7 | 10 | 396 | 23 | 383 | 4.28e-97 | 296 |
| Msa0500890 | MtrunA17_Chr8g0335591 | 40.712 | 393 | 208 | 10 | 10 | 396 | 22 | 395 | 4.39e-85 | 265 |
| Msa0500890 | MtrunA17_Chr8g0335631 | 42.386 | 394 | 198 | 10 | 10 | 396 | 22 | 393 | 5.84e-85 | 265 |
| Msa0500890 | MtrunA17_Chr1g0199801 | 30.203 | 394 | 241 | 12 | 20 | 399 | 75 | 448 | 1.31e-43 | 158 |
| Msa0500890 | MtrunA17_Chr7g0259871 | 28.269 | 283 | 184 | 8 | 22 | 299 | 32 | 300 | 7.90e-28 | 113 |
| Msa0500890 | MtrunA17_Chr1g0185551 | 26.377 | 345 | 207 | 11 | 22 | 355 | 32 | 340 | 2.30e-27 | 112 |
| Msa0500890 | MtrunA17_Chr2g0292051 | 28.756 | 386 | 216 | 18 | 20 | 397 | 69 | 403 | 2.42e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500890 | AT2G26560.1 | 63.772 | 403 | 142 | 2 | 1 | 403 | 3 | 401 | 0.0 | 529 |
| Msa0500890 | AT4G37070.2 | 59.126 | 389 | 159 | 0 | 12 | 400 | 11 | 399 | 9.06e-170 | 481 |
| Msa0500890 | AT4G37060.1 | 57.252 | 393 | 168 | 0 | 13 | 405 | 12 | 404 | 3.28e-165 | 470 |
| Msa0500890 | AT4G37050.1 | 58.578 | 408 | 157 | 3 | 2 | 401 | 21 | 424 | 1.41e-164 | 469 |
| Msa0500890 | AT4G37070.3 | 58.713 | 373 | 154 | 0 | 12 | 384 | 11 | 383 | 1.07e-160 | 457 |
| Msa0500890 | AT4G37070.1 | 58.713 | 373 | 154 | 0 | 12 | 384 | 11 | 383 | 1.07e-160 | 457 |
| Msa0500890 | AT4G37060.2 | 53.066 | 424 | 168 | 1 | 13 | 405 | 12 | 435 | 2.10e-158 | 454 |
| Msa0500890 | AT4G37070.4 | 56.568 | 373 | 151 | 1 | 12 | 384 | 11 | 372 | 1.89e-151 | 433 |
| Msa0500890 | AT5G43590.1 | 53.728 | 389 | 169 | 5 | 12 | 396 | 6 | 387 | 4.58e-128 | 375 |
| Msa0500890 | AT5G43590.2 | 53.728 | 389 | 169 | 5 | 12 | 396 | 73 | 454 | 4.71e-127 | 375 |
| Msa0500890 | AT4G29800.1 | 28.500 | 400 | 249 | 15 | 20 | 403 | 121 | 499 | 1.39e-37 | 143 |
| Msa0500890 | AT4G29800.2 | 28.429 | 401 | 249 | 15 | 20 | 403 | 121 | 500 | 1.98e-37 | 142 |
| Msa0500890 | AT2G39220.1 | 29.124 | 388 | 243 | 14 | 20 | 399 | 108 | 471 | 2.73e-37 | 142 |
| Msa0500890 | AT3G54950.1 | 30.252 | 357 | 215 | 12 | 20 | 369 | 98 | 427 | 4.10e-37 | 141 |
| Msa0500890 | AT3G63200.1 | 29.524 | 315 | 190 | 12 | 22 | 330 | 32 | 320 | 2.85e-32 | 126 |
Find 101 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTTGGGAAAGTATTT+TGG | 0.144450 | 3_4:+41517305 | None:intergenic |
| GCATTGATGGTGGCGGTATA+AGG | 0.221210 | 3_4:-41518760 | Msa0500890:CDS |
| TCAACAATTTGTCACCAATT+TGG | 0.229429 | 3_4:+41517506 | None:intergenic |
| ATGTTTGAGCCAATTGAAAA+TGG | 0.253040 | 3_4:-41517448 | Msa0500890:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3_4:+41518248 | None:intergenic |
| AGGTATTTCCCATCATATTT+TGG | 0.273356 | 3_4:+41518365 | None:intergenic |
| TTGACTAAACATGTCGATTA+AGG | 0.277813 | 3_4:+41517762 | None:intergenic |
| ATGCGAAAATGGCAGCAAAA+TGG | 0.281352 | 3_4:-41517822 | Msa0500890:CDS |
| GCTATATTCCATTGGCTTGA+TGG | 0.290285 | 3_4:+41517900 | None:intergenic |
| GGAGAGTGTTCCAAGTAAAA+TGG | 0.292232 | 3_4:+41518551 | None:intergenic |
| TAGTCAATCATCAGCTGATA+TGG | 0.302481 | 3_4:-41517746 | Msa0500890:CDS |
| CATTGATGGTGGCGGTATAA+GGG | 0.333516 | 3_4:-41518759 | Msa0500890:CDS |
| TGCGAAAATGGCAGCAAAAT+GGG | 0.333561 | 3_4:-41517821 | Msa0500890:CDS |
| GATTACTTTGATGTGATTAC+AGG | 0.334035 | 3_4:-41518659 | Msa0500890:CDS |
| GATGATATTTCAGACTTTAG+TGG | 0.338291 | 3_4:-41517974 | Msa0500890:intron |
| GTGTGTTGCCTTCTGTATCT+TGG | 0.340354 | 3_4:+41518129 | None:intergenic |
| CACAAACACCGCCATCAATA+AGG | 0.340884 | 3_4:+41518096 | None:intergenic |
| TTATGTTGTGGAAAGATCTT+AGG | 0.343987 | 3_4:+41518530 | None:intergenic |
| ACAAAAGTTCAATGCGAAAA+TGG | 0.352216 | 3_4:-41517833 | Msa0500890:CDS |
| CATGAATTCAACCTTATTGA+TGG | 0.370800 | 3_4:-41518107 | Msa0500890:CDS |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3_4:+41518708 | None:intergenic |
| GCTGCACCTACTTATCTTCC+AGG | 0.379184 | 3_4:-41518167 | Msa0500890:CDS |
| ACTCGCGGAGCCTCCTCTCT+TGG | 0.386057 | 3_4:+41517292 | None:intergenic |
| GGCAGCAAAATGGGGTCTGC+TGG | 0.394148 | 3_4:-41517812 | Msa0500890:CDS |
| TGAAGTGGTAAGGGAGAAGT+TGG | 0.397346 | 3_4:-41518339 | Msa0500890:CDS |
| GAACTCATGCAGGGACTTGT+TGG | 0.403597 | 3_4:-41518423 | Msa0500890:intron |
| GTTGAAGAAACCAGTCTCTA+AGG | 0.407068 | 3_4:-41517488 | Msa0500890:CDS |
| CAAAATGGGGTCTGCTGGAT+TGG | 0.411164 | 3_4:-41517807 | Msa0500890:CDS |
| TGTTTGAGCCAATTGAAAAT+GGG | 0.414266 | 3_4:-41517447 | Msa0500890:CDS |
| CAGATTCAGCCTCCCACCTA+TGG | 0.421293 | 3_4:-41518803 | Msa0500890:CDS |
| CTCGCGGAGCCTCCTCTCTT+GGG | 0.424985 | 3_4:+41517293 | None:intergenic |
| AACTCATGCAGGGACTTGTT+GGG | 0.426138 | 3_4:-41518422 | Msa0500890:intron |
| GAAGTGGTAAGGGAGAAGTT+GGG | 0.431386 | 3_4:-41518338 | Msa0500890:CDS |
| GTGACTATACTAAGCATTGA+TGG | 0.439641 | 3_4:-41518773 | Msa0500890:CDS |
| TTGATAATCTCACTGGGCAC+TGG | 0.445741 | 3_4:-41517871 | Msa0500890:CDS |
| CCGTTTCTTGATAATCTCAC+TGG | 0.457904 | 3_4:-41517878 | Msa0500890:CDS |
| TCGCAACTTCAAGAATTAGA+TGG | 0.459099 | 3_4:-41518701 | Msa0500890:CDS |
| ACATAATTACCTACGGATAC+AGG | 0.468841 | 3_4:-41517680 | Msa0500890:intron |
| CAGGGACTTGTTGGGATCAG+TGG | 0.475838 | 3_4:-41518414 | Msa0500890:CDS |
| AGGAACTCGAGGATAGTTGC+GGG | 0.480109 | 3_4:+41518728 | None:intergenic |
| TGACTAAACATGTCGATTAA+GGG | 0.483825 | 3_4:+41517763 | None:intergenic |
| AATACCTTCATGAAGTGGTA+AGG | 0.488193 | 3_4:-41518349 | Msa0500890:CDS |
| CGGTGTTTGTGCAAATAATC+CGG | 0.488784 | 3_4:-41518084 | Msa0500890:intron |
| TCTAAGGTCAATTTAGAGAA+TGG | 0.490927 | 3_4:-41517472 | Msa0500890:CDS |
| AAGTGGTAAGGGAGAAGTTG+GGG | 0.499535 | 3_4:-41518337 | Msa0500890:CDS |
| TTAAAGCTTTATTAGTGTGA+GGG | 0.500043 | 3_4:+41517262 | None:intergenic |
| CCAAAATACTTTCCCAAGAG+AGG | 0.501656 | 3_4:-41517305 | Msa0500890:CDS |
| AGGGACTTGTTGGGATCAGT+GGG | 0.501975 | 3_4:-41518413 | Msa0500890:CDS |
| CCAACCAAGATGCTCTCAAA+AGG | 0.502859 | 3_4:-41517420 | Msa0500890:intron |
| TCTAAATTGACCTTAGAGAC+TGG | 0.503415 | 3_4:+41517478 | None:intergenic |
| TTGTAGCCTGGAAGATAAGT+AGG | 0.509381 | 3_4:+41518161 | None:intergenic |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3_4:-41518210 | Msa0500890:CDS |
| CTCGAGTGACGGCAGCAAGA+TGG | 0.516447 | 3_4:+41517716 | None:intergenic |
| GATCAAGAAAACTCCTTGCA+TGG | 0.518456 | 3_4:-41518225 | Msa0500890:CDS |
| TTAGCAGGACCAAAATATGA+TGG | 0.523003 | 3_4:-41518374 | Msa0500890:CDS |
| AGATATTCGTACTTATGTTG+TGG | 0.539635 | 3_4:+41518518 | None:intergenic |
| AAGAAACGGCTATATTCCAT+TGG | 0.541585 | 3_4:+41517892 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.542739 | 3_4:+41518790 | None:intergenic |
| TGGTTCTTGAAATTGTAGCC+TGG | 0.542827 | 3_4:+41518149 | None:intergenic |
| TATAGTCACTAAGTTTCCAT+AGG | 0.546556 | 3_4:+41518787 | None:intergenic |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3_4:+41518791 | None:intergenic |
| CCAGTGAGATTATCAAGAAA+CGG | 0.553943 | 3_4:+41517878 | None:intergenic |
| TGTGATTACAGGAACAAGTA+CGG | 0.557423 | 3_4:-41518648 | Msa0500890:CDS |
| ATTAAAGCTTTATTAGTGTG+AGG | 0.557747 | 3_4:+41517261 | None:intergenic |
| ATTCACAACATAATTACCTA+CGG | 0.562378 | 3_4:-41517687 | Msa0500890:CDS |
| TAAAGCTTTATTAGTGTGAG+GGG | 0.564782 | 3_4:+41517263 | None:intergenic |
| CGTTTCTTGATAATCTCACT+GGG | 0.566181 | 3_4:-41517877 | Msa0500890:CDS |
| GCGAAAATGGCAGCAAAATG+GGG | 0.566216 | 3_4:-41517820 | Msa0500890:CDS |
| AAATTGTTCAGATCATTAGC+AGG | 0.566843 | 3_4:-41518389 | Msa0500890:CDS |
| AATGCAGGATGATACATTGA+CGG | 0.567386 | 3_4:-41517581 | Msa0500890:intron |
| AATTAGATGGTGAATCTGCT+AGG | 0.567945 | 3_4:-41518688 | Msa0500890:CDS |
| CTTCTATTCCATCAAGCCAA+TGG | 0.568706 | 3_4:-41517908 | Msa0500890:CDS |
| ATTGATGGTGGCGGTATAAG+GGG | 0.574647 | 3_4:-41518758 | Msa0500890:CDS |
| TAGCAGGACCAAAATATGAT+GGG | 0.575443 | 3_4:-41518373 | Msa0500890:CDS |
| TCTCCCTTACCACTTCATGA+AGG | 0.576054 | 3_4:+41518345 | None:intergenic |
| AAGATAAGTAGGTGCAGCAG+AGG | 0.577597 | 3_4:+41518172 | None:intergenic |
| TGAATTAAGTGCTCGAGTGA+CGG | 0.577920 | 3_4:+41517705 | None:intergenic |
| GTTTGAGCCAATTGAAAATG+GGG | 0.578259 | 3_4:-41517446 | Msa0500890:CDS |
| ATACCTTCATGAAGTGGTAA+GGG | 0.581117 | 3_4:-41518348 | Msa0500890:CDS |
| GTGATTACAGGAACAAGTAC+GGG | 0.582488 | 3_4:-41518647 | Msa0500890:CDS |
| CTGCTGGATTGGTTAACTCA+CGG | 0.586370 | 3_4:-41517796 | Msa0500890:CDS |
| ATGCAGGATGATACATTGAC+GGG | 0.587863 | 3_4:-41517580 | Msa0500890:intron |
| TGGTGAATCTGCTAGGCTTG+CGG | 0.599282 | 3_4:-41518681 | Msa0500890:CDS |
| TGGGAAATACCTTCATGAAG+TGG | 0.608258 | 3_4:-41518354 | Msa0500890:CDS |
| AAGGAACTCGAGGATAGTTG+CGG | 0.612182 | 3_4:+41518727 | None:intergenic |
| ATACTAAGCATTGATGGTGG+CGG | 0.616430 | 3_4:-41518767 | Msa0500890:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.625469 | 3_4:+41518212 | None:intergenic |
| TTCAAGAACCAAGATACAGA+AGG | 0.625819 | 3_4:-41518137 | Msa0500890:CDS |
| GTTGCGATTCAAGGAACTCG+AGG | 0.637528 | 3_4:+41518717 | None:intergenic |
| CTAAGAATTCACAAGCAATG+AGG | 0.645552 | 3_4:+41517220 | None:intergenic |
| AAATGTGGGAATCACAATGT+TGG | 0.650439 | 3_4:+41518289 | None:intergenic |
| AGTGGTAAGGGAGAAGTTGG+GGG | 0.653344 | 3_4:-41518336 | Msa0500890:CDS |
| AAATACTTTCCCAAGAGAGG+AGG | 0.658189 | 3_4:-41517302 | Msa0500890:CDS |
| ATAATTGTACCTGTATCCGT+AGG | 0.659663 | 3_4:+41517671 | None:intergenic |
| GAATTCAACCTTATTGATGG+CGG | 0.688975 | 3_4:-41518104 | Msa0500890:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3_4:+41518794 | None:intergenic |
| TGTGAGGGGATTTCAACTCG+CGG | 0.697585 | 3_4:+41517277 | None:intergenic |
| ATTACAGGAACAAGTACGGG+TGG | 0.711093 | 3_4:-41518644 | Msa0500890:CDS |
| ACTATACTAAGCATTGATGG+TGG | 0.712098 | 3_4:-41518770 | Msa0500890:CDS |
| CTGGATTGGTTAACTCACGG+TGG | 0.721558 | 3_4:-41517793 | Msa0500890:CDS |
| GGGACTTGTTGGGATCAGTG+GGG | 0.764722 | 3_4:-41518412 | Msa0500890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTTACAAAATGT+CGG | + | chr3_4:41517582-41517601 | None:intergenic | 10.0% |
| !! | AATATTTATAGTATATATAC+CGG | + | chr3_4:41517982-41518001 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTTACAAAATGT+CGG | + | chr3_4:41517582-41517601 | None:intergenic | 10.0% |
| !! | AATATTTATAGTATATATAC+CGG | + | chr3_4:41517982-41518001 | None:intergenic | 10.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | + | chr3_4:41517799-41517818 | None:intergenic | 15.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | + | chr3_4:41517799-41517818 | None:intergenic | 15.0% |
| !!! | ATTGTTTTTATGTCAAATGT+GGG | + | chr3_4:41517772-41517791 | None:intergenic | 20.0% |
| !! | TAATTGTGTATTAAAAATGC+AGG | - | chr3_4:41518448-41518467 | Msa0500890:intron | 20.0% |
| !!! | TTTTTCTAAATTCTCTTTTG+TGG | + | chr3_4:41518513-41518532 | None:intergenic | 20.0% |
| !! | TTAGTCATTTAATCACATAA+TGG | + | chr3_4:41518692-41518711 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATGTCAAATGT+GGG | + | chr3_4:41517772-41517791 | None:intergenic | 20.0% |
| !! | TAATTGTGTATTAAAAATGC+AGG | - | chr3_4:41518448-41518467 | Msa0500890:intron | 20.0% |
| !!! | TTTTTCTAAATTCTCTTTTG+TGG | + | chr3_4:41518513-41518532 | None:intergenic | 20.0% |
| !! | TTAGTCATTTAATCACATAA+TGG | + | chr3_4:41518692-41518711 | None:intergenic | 20.0% |
| ! | ATAAATATTTGAACTCATGC+AGG | - | chr3_4:41517611-41517630 | Msa0500890:intron | 25.0% |
| ! | TAAATATTTGAACTCATGCA+GGG | - | chr3_4:41517612-41517631 | Msa0500890:intron | 25.0% |
| !!! | CATTGTTTTTATGTCAAATG+TGG | + | chr3_4:41517773-41517792 | None:intergenic | 25.0% |
| !!! | ATTGAATAACCAGTTGTTTT+TGG | - | chr3_4:41517999-41518018 | Msa0500890:intron | 25.0% |
| !! | TTGAACTTTTGTTCATTCTT+GGG | + | chr3_4:41518203-41518222 | None:intergenic | 25.0% |
| !! | ATTGAACTTTTGTTCATTCT+TGG | + | chr3_4:41518204-41518223 | None:intergenic | 25.0% |
| ! | ATTCACAACATAATTACCTA+CGG | - | chr3_4:41518357-41518376 | Msa0500890:CDS | 25.0% |
| ! | TTAGTAGTGTTTACATATGT+GGG | + | chr3_4:41518406-41518425 | None:intergenic | 25.0% |
| ! | ATTAGTAGTGTTTACATATG+TGG | + | chr3_4:41518407-41518426 | None:intergenic | 25.0% |
| ! | TTAGAAAAACTTTGCCAAAT+TGG | - | chr3_4:41518524-41518543 | Msa0500890:intron | 25.0% |
| !!! | ACATTTGTTTTAATCTTTGC+AGG | - | chr3_4:41518712-41518731 | Msa0500890:CDS | 25.0% |
| !!! | TTAAAGCTTTATTAGTGTGA+GGG | + | chr3_4:41518785-41518804 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTTTATTAGTGTG+AGG | + | chr3_4:41518786-41518805 | None:intergenic | 25.0% |
| ! | ATAAATATTTGAACTCATGC+AGG | - | chr3_4:41517611-41517630 | Msa0500890:intron | 25.0% |
| ! | TAAATATTTGAACTCATGCA+GGG | - | chr3_4:41517612-41517631 | Msa0500890:intron | 25.0% |
| !!! | CATTGTTTTTATGTCAAATG+TGG | + | chr3_4:41517773-41517792 | None:intergenic | 25.0% |
| !!! | ATTGAATAACCAGTTGTTTT+TGG | - | chr3_4:41517999-41518018 | Msa0500890:intron | 25.0% |
| !! | TTGAACTTTTGTTCATTCTT+GGG | + | chr3_4:41518203-41518222 | None:intergenic | 25.0% |
| !! | ATTGAACTTTTGTTCATTCT+TGG | + | chr3_4:41518204-41518223 | None:intergenic | 25.0% |
| ! | ATTCACAACATAATTACCTA+CGG | - | chr3_4:41518357-41518376 | Msa0500890:CDS | 25.0% |
| ! | TTAGTAGTGTTTACATATGT+GGG | + | chr3_4:41518406-41518425 | None:intergenic | 25.0% |
| ! | ATTAGTAGTGTTTACATATG+TGG | + | chr3_4:41518407-41518426 | None:intergenic | 25.0% |
| ! | TTAGAAAAACTTTGCCAAAT+TGG | - | chr3_4:41518524-41518543 | Msa0500890:intron | 25.0% |
| !!! | ACATTTGTTTTAATCTTTGC+AGG | - | chr3_4:41518712-41518731 | Msa0500890:CDS | 25.0% |
| !!! | TTAAAGCTTTATTAGTGTGA+GGG | + | chr3_4:41518785-41518804 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTTTATTAGTGTG+AGG | + | chr3_4:41518786-41518805 | None:intergenic | 25.0% |
| TATAGTCACTAAGTTTCCAT+AGG | + | chr3_4:41517260-41517279 | None:intergenic | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | - | chr3_4:41517385-41517404 | Msa0500890:intron | 30.0% | |
| ! | GGATATCAAACCATTTTACT+TGG | - | chr3_4:41517483-41517502 | Msa0500890:CDS | 30.0% |
| TTATGTTGTGGAAAGATCTT+AGG | + | chr3_4:41517517-41517536 | None:intergenic | 30.0% | |
| AGATATTCGTACTTATGTTG+TGG | + | chr3_4:41517529-41517548 | None:intergenic | 30.0% | |
| AAATTGTTCAGATCATTAGC+AGG | - | chr3_4:41517655-41517674 | Msa0500890:intron | 30.0% | |
| ! | AGGTATTTCCCATCATATTT+TGG | + | chr3_4:41517682-41517701 | None:intergenic | 30.0% |
| CATGAATTCAACCTTATTGA+TGG | - | chr3_4:41517937-41517956 | Msa0500890:CDS | 30.0% | |
| ! | GTTTGATTTCCAAAAACAAC+TGG | + | chr3_4:41518011-41518030 | None:intergenic | 30.0% |
| GATGATATTTCAGACTTTAG+TGG | - | chr3_4:41518070-41518089 | Msa0500890:intron | 30.0% | |
| ACAAAAGTTCAATGCGAAAA+TGG | - | chr3_4:41518211-41518230 | Msa0500890:CDS | 30.0% | |
| ! | TGACTAAACATGTCGATTAA+GGG | + | chr3_4:41518284-41518303 | None:intergenic | 30.0% |
| ! | TTGACTAAACATGTCGATTA+AGG | + | chr3_4:41518285-41518304 | None:intergenic | 30.0% |
| TAGTAGTGTTTACATATGTG+GGG | + | chr3_4:41518405-41518424 | None:intergenic | 30.0% | |
| TCAACAATTTGTCACCAATT+TGG | + | chr3_4:41518541-41518560 | None:intergenic | 30.0% | |
| ! | TCTAAGGTCAATTTAGAGAA+TGG | - | chr3_4:41518572-41518591 | Msa0500890:CDS | 30.0% |
| ATGTTTGAGCCAATTGAAAA+TGG | - | chr3_4:41518596-41518615 | Msa0500890:CDS | 30.0% | |
| TGTTTGAGCCAATTGAAAAT+GGG | - | chr3_4:41518597-41518616 | Msa0500890:CDS | 30.0% | |
| !! | TAAAGCTTTATTAGTGTGAG+GGG | + | chr3_4:41518784-41518803 | None:intergenic | 30.0% |
| TATAGTCACTAAGTTTCCAT+AGG | + | chr3_4:41517260-41517279 | None:intergenic | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | - | chr3_4:41517385-41517404 | Msa0500890:intron | 30.0% | |
| ! | GGATATCAAACCATTTTACT+TGG | - | chr3_4:41517483-41517502 | Msa0500890:CDS | 30.0% |
| TTATGTTGTGGAAAGATCTT+AGG | + | chr3_4:41517517-41517536 | None:intergenic | 30.0% | |
| AGATATTCGTACTTATGTTG+TGG | + | chr3_4:41517529-41517548 | None:intergenic | 30.0% | |
| AAATTGTTCAGATCATTAGC+AGG | - | chr3_4:41517655-41517674 | Msa0500890:intron | 30.0% | |
| ! | AGGTATTTCCCATCATATTT+TGG | + | chr3_4:41517682-41517701 | None:intergenic | 30.0% |
| CATGAATTCAACCTTATTGA+TGG | - | chr3_4:41517937-41517956 | Msa0500890:CDS | 30.0% | |
| ! | GTTTGATTTCCAAAAACAAC+TGG | + | chr3_4:41518011-41518030 | None:intergenic | 30.0% |
| GATGATATTTCAGACTTTAG+TGG | - | chr3_4:41518070-41518089 | Msa0500890:intron | 30.0% | |
| ACAAAAGTTCAATGCGAAAA+TGG | - | chr3_4:41518211-41518230 | Msa0500890:CDS | 30.0% | |
| ! | TGACTAAACATGTCGATTAA+GGG | + | chr3_4:41518284-41518303 | None:intergenic | 30.0% |
| ! | TTGACTAAACATGTCGATTA+AGG | + | chr3_4:41518285-41518304 | None:intergenic | 30.0% |
| TAGTAGTGTTTACATATGTG+GGG | + | chr3_4:41518405-41518424 | None:intergenic | 30.0% | |
| TCAACAATTTGTCACCAATT+TGG | + | chr3_4:41518541-41518560 | None:intergenic | 30.0% | |
| ! | TCTAAGGTCAATTTAGAGAA+TGG | - | chr3_4:41518572-41518591 | Msa0500890:CDS | 30.0% |
| ATGTTTGAGCCAATTGAAAA+TGG | - | chr3_4:41518596-41518615 | Msa0500890:CDS | 30.0% | |
| TGTTTGAGCCAATTGAAAAT+GGG | - | chr3_4:41518597-41518616 | Msa0500890:CDS | 30.0% | |
| !! | TAAAGCTTTATTAGTGTGAG+GGG | + | chr3_4:41518784-41518803 | None:intergenic | 30.0% |
| !! | GTGACTATACTAAGCATTGA+TGG | - | chr3_4:41517271-41517290 | Msa0500890:CDS | 35.0% |
| !! | ACTATACTAAGCATTGATGG+TGG | - | chr3_4:41517274-41517293 | Msa0500890:CDS | 35.0% |
| ATTCTTGAAGTTGCGATTCA+AGG | + | chr3_4:41517339-41517358 | None:intergenic | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | - | chr3_4:41517343-41517362 | Msa0500890:intron | 35.0% | |
| AATTAGATGGTGAATCTGCT+AGG | - | chr3_4:41517356-41517375 | Msa0500890:intron | 35.0% | |
| TGTGATTACAGGAACAAGTA+CGG | - | chr3_4:41517396-41517415 | Msa0500890:intron | 35.0% | |
| ATATCCTTAGCAGCAAAAAG+TGG | + | chr3_4:41517469-41517488 | None:intergenic | 35.0% | |
| TTAGCAGGACCAAAATATGA+TGG | - | chr3_4:41517670-41517689 | Msa0500890:intron | 35.0% | |
| TAGCAGGACCAAAATATGAT+GGG | - | chr3_4:41517671-41517690 | Msa0500890:intron | 35.0% | |
| AATACCTTCATGAAGTGGTA+AGG | - | chr3_4:41517695-41517714 | Msa0500890:CDS | 35.0% | |
| ATACCTTCATGAAGTGGTAA+GGG | - | chr3_4:41517696-41517715 | Msa0500890:CDS | 35.0% | |
| AAATGTGGGAATCACAATGT+TGG | + | chr3_4:41517758-41517777 | None:intergenic | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | - | chr3_4:41517907-41517926 | Msa0500890:CDS | 35.0% | |
| GAATTCAACCTTATTGATGG+CGG | - | chr3_4:41517940-41517959 | Msa0500890:CDS | 35.0% | |
| AAGAAACGGCTATATTCCAT+TGG | + | chr3_4:41518155-41518174 | None:intergenic | 35.0% | |
| CCAGTGAGATTATCAAGAAA+CGG | + | chr3_4:41518169-41518188 | None:intergenic | 35.0% | |
| ! | CGTTTCTTGATAATCTCACT+GGG | - | chr3_4:41518167-41518186 | Msa0500890:CDS | 35.0% |
| TAGTCAATCATCAGCTGATA+TGG | - | chr3_4:41518298-41518317 | Msa0500890:CDS | 35.0% | |
| ACATAATTACCTACGGATAC+AGG | - | chr3_4:41518364-41518383 | Msa0500890:CDS | 35.0% | |
| ATAATTGTACCTGTATCCGT+AGG | + | chr3_4:41518376-41518395 | None:intergenic | 35.0% | |
| AATGCAGGATGATACATTGA+CGG | - | chr3_4:41518463-41518482 | Msa0500890:intron | 35.0% | |
| TCTAAATTGACCTTAGAGAC+TGG | + | chr3_4:41518569-41518588 | None:intergenic | 35.0% | |
| GTTTGAGCCAATTGAAAATG+GGG | - | chr3_4:41518598-41518617 | Msa0500890:CDS | 35.0% | |
| ! | TTGGTTTCCCCATTTTCAAT+TGG | + | chr3_4:41518608-41518627 | None:intergenic | 35.0% |
| !!! | TTTACCTTTTGAGAGCATCT+TGG | + | chr3_4:41518631-41518650 | None:intergenic | 35.0% |
| CTAAGAATTCACAAGCAATG+AGG | + | chr3_4:41518827-41518846 | None:intergenic | 35.0% | |
| !! | GTGACTATACTAAGCATTGA+TGG | - | chr3_4:41517271-41517290 | Msa0500890:CDS | 35.0% |
| !! | ACTATACTAAGCATTGATGG+TGG | - | chr3_4:41517274-41517293 | Msa0500890:CDS | 35.0% |
| ATTCTTGAAGTTGCGATTCA+AGG | + | chr3_4:41517339-41517358 | None:intergenic | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | - | chr3_4:41517343-41517362 | Msa0500890:intron | 35.0% | |
| AATTAGATGGTGAATCTGCT+AGG | - | chr3_4:41517356-41517375 | Msa0500890:intron | 35.0% | |
| TGTGATTACAGGAACAAGTA+CGG | - | chr3_4:41517396-41517415 | Msa0500890:intron | 35.0% | |
| ATATCCTTAGCAGCAAAAAG+TGG | + | chr3_4:41517469-41517488 | None:intergenic | 35.0% | |
| TTAGCAGGACCAAAATATGA+TGG | - | chr3_4:41517670-41517689 | Msa0500890:intron | 35.0% | |
| TAGCAGGACCAAAATATGAT+GGG | - | chr3_4:41517671-41517690 | Msa0500890:intron | 35.0% | |
| AATACCTTCATGAAGTGGTA+AGG | - | chr3_4:41517695-41517714 | Msa0500890:CDS | 35.0% | |
| ATACCTTCATGAAGTGGTAA+GGG | - | chr3_4:41517696-41517715 | Msa0500890:CDS | 35.0% | |
| AAATGTGGGAATCACAATGT+TGG | + | chr3_4:41517758-41517777 | None:intergenic | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | - | chr3_4:41517907-41517926 | Msa0500890:CDS | 35.0% | |
| GAATTCAACCTTATTGATGG+CGG | - | chr3_4:41517940-41517959 | Msa0500890:CDS | 35.0% | |
| AAGAAACGGCTATATTCCAT+TGG | + | chr3_4:41518155-41518174 | None:intergenic | 35.0% | |
| CCAGTGAGATTATCAAGAAA+CGG | + | chr3_4:41518169-41518188 | None:intergenic | 35.0% | |
| ! | CGTTTCTTGATAATCTCACT+GGG | - | chr3_4:41518167-41518186 | Msa0500890:CDS | 35.0% |
| TAGTCAATCATCAGCTGATA+TGG | - | chr3_4:41518298-41518317 | Msa0500890:CDS | 35.0% | |
| ACATAATTACCTACGGATAC+AGG | - | chr3_4:41518364-41518383 | Msa0500890:CDS | 35.0% | |
| ATAATTGTACCTGTATCCGT+AGG | + | chr3_4:41518376-41518395 | None:intergenic | 35.0% | |
| AATGCAGGATGATACATTGA+CGG | - | chr3_4:41518463-41518482 | Msa0500890:intron | 35.0% | |
| TCTAAATTGACCTTAGAGAC+TGG | + | chr3_4:41518569-41518588 | None:intergenic | 35.0% | |
| GTTTGAGCCAATTGAAAATG+GGG | - | chr3_4:41518598-41518617 | Msa0500890:CDS | 35.0% | |
| ! | TTGGTTTCCCCATTTTCAAT+TGG | + | chr3_4:41518608-41518627 | None:intergenic | 35.0% |
| !!! | TTTACCTTTTGAGAGCATCT+TGG | + | chr3_4:41518631-41518650 | None:intergenic | 35.0% |
| CTAAGAATTCACAAGCAATG+AGG | + | chr3_4:41518827-41518846 | None:intergenic | 35.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | + | chr3_4:41517256-41517275 | None:intergenic | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | + | chr3_4:41517257-41517276 | None:intergenic | 40.0% | |
| !! | ATACTAAGCATTGATGGTGG+CGG | - | chr3_4:41517277-41517296 | Msa0500890:CDS | 40.0% |
| GTGATTACAGGAACAAGTAC+GGG | - | chr3_4:41517397-41517416 | Msa0500890:intron | 40.0% | |
| ! | AGTGGACGCTTTTGTTCATT+CGG | + | chr3_4:41517451-41517470 | None:intergenic | 40.0% |
| !! | GGAGAGTGTTCCAAGTAAAA+TGG | + | chr3_4:41517496-41517515 | None:intergenic | 40.0% |
| TGGGAAATACCTTCATGAAG+TGG | - | chr3_4:41517690-41517709 | Msa0500890:CDS | 40.0% | |
| GATCAAGAAAACTCCTTGCA+TGG | - | chr3_4:41517819-41517838 | Msa0500890:CDS | 40.0% | |
| TTGTAGCCTGGAAGATAAGT+AGG | + | chr3_4:41517886-41517905 | None:intergenic | 40.0% | |
| TGGTTCTTGAAATTGTAGCC+TGG | + | chr3_4:41517898-41517917 | None:intergenic | 40.0% | |
| CGGTGTTTGTGCAAATAATC+CGG | - | chr3_4:41517960-41517979 | Msa0500890:CDS | 40.0% | |
| CTTCTATTCCATCAAGCCAA+TGG | - | chr3_4:41518136-41518155 | Msa0500890:CDS | 40.0% | |
| !! | GCTATATTCCATTGGCTTGA+TGG | + | chr3_4:41518147-41518166 | None:intergenic | 40.0% |
| ! | CCGTTTCTTGATAATCTCAC+TGG | - | chr3_4:41518166-41518185 | Msa0500890:CDS | 40.0% |
| ATGCGAAAATGGCAGCAAAA+TGG | - | chr3_4:41518222-41518241 | Msa0500890:CDS | 40.0% | |
| TGCGAAAATGGCAGCAAAAT+GGG | - | chr3_4:41518223-41518242 | Msa0500890:CDS | 40.0% | |
| TGAATTAAGTGCTCGAGTGA+CGG | + | chr3_4:41518342-41518361 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+GGG | - | chr3_4:41518464-41518483 | Msa0500890:intron | 40.0% | |
| GTTGAAGAAACCAGTCTCTA+AGG | - | chr3_4:41518556-41518575 | Msa0500890:CDS | 40.0% | |
| !!! | CCTCTCTTGGGAAAGTATTT+TGG | + | chr3_4:41518742-41518761 | None:intergenic | 40.0% |
| CCAAAATACTTTCCCAAGAG+AGG | - | chr3_4:41518739-41518758 | Msa0500890:CDS | 40.0% | |
| AAATACTTTCCCAAGAGAGG+AGG | - | chr3_4:41518742-41518761 | Msa0500890:CDS | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | + | chr3_4:41517256-41517275 | None:intergenic | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | + | chr3_4:41517257-41517276 | None:intergenic | 40.0% | |
| !! | ATACTAAGCATTGATGGTGG+CGG | - | chr3_4:41517277-41517296 | Msa0500890:CDS | 40.0% |
| GTGATTACAGGAACAAGTAC+GGG | - | chr3_4:41517397-41517416 | Msa0500890:intron | 40.0% | |
| ! | AGTGGACGCTTTTGTTCATT+CGG | + | chr3_4:41517451-41517470 | None:intergenic | 40.0% |
| !! | GGAGAGTGTTCCAAGTAAAA+TGG | + | chr3_4:41517496-41517515 | None:intergenic | 40.0% |
| TGGGAAATACCTTCATGAAG+TGG | - | chr3_4:41517690-41517709 | Msa0500890:CDS | 40.0% | |
| GATCAAGAAAACTCCTTGCA+TGG | - | chr3_4:41517819-41517838 | Msa0500890:CDS | 40.0% | |
| TTGTAGCCTGGAAGATAAGT+AGG | + | chr3_4:41517886-41517905 | None:intergenic | 40.0% | |
| TGGTTCTTGAAATTGTAGCC+TGG | + | chr3_4:41517898-41517917 | None:intergenic | 40.0% | |
| CGGTGTTTGTGCAAATAATC+CGG | - | chr3_4:41517960-41517979 | Msa0500890:CDS | 40.0% | |
| CTTCTATTCCATCAAGCCAA+TGG | - | chr3_4:41518136-41518155 | Msa0500890:CDS | 40.0% | |
| !! | GCTATATTCCATTGGCTTGA+TGG | + | chr3_4:41518147-41518166 | None:intergenic | 40.0% |
| ! | CCGTTTCTTGATAATCTCAC+TGG | - | chr3_4:41518166-41518185 | Msa0500890:CDS | 40.0% |
| ATGCGAAAATGGCAGCAAAA+TGG | - | chr3_4:41518222-41518241 | Msa0500890:CDS | 40.0% | |
| TGCGAAAATGGCAGCAAAAT+GGG | - | chr3_4:41518223-41518242 | Msa0500890:CDS | 40.0% | |
| TGAATTAAGTGCTCGAGTGA+CGG | + | chr3_4:41518342-41518361 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+GGG | - | chr3_4:41518464-41518483 | Msa0500890:intron | 40.0% | |
| GTTGAAGAAACCAGTCTCTA+AGG | - | chr3_4:41518556-41518575 | Msa0500890:CDS | 40.0% | |
| !!! | CCTCTCTTGGGAAAGTATTT+TGG | + | chr3_4:41518742-41518761 | None:intergenic | 40.0% |
| CCAAAATACTTTCCCAAGAG+AGG | - | chr3_4:41518739-41518758 | Msa0500890:CDS | 40.0% | |
| AAATACTTTCCCAAGAGAGG+AGG | - | chr3_4:41518742-41518761 | Msa0500890:CDS | 40.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | + | chr3_4:41517253-41517272 | None:intergenic | 45.0% | |
| !! | CATTGATGGTGGCGGTATAA+GGG | - | chr3_4:41517285-41517304 | Msa0500890:CDS | 45.0% |
| !! | ATTGATGGTGGCGGTATAAG+GGG | - | chr3_4:41517286-41517305 | Msa0500890:CDS | 45.0% |
| AAGGAACTCGAGGATAGTTG+CGG | + | chr3_4:41517320-41517339 | None:intergenic | 45.0% | |
| ATTACAGGAACAAGTACGGG+TGG | - | chr3_4:41517400-41517419 | Msa0500890:intron | 45.0% | |
| ! | TGGACGCTTTTGTTCATTCG+GGG | + | chr3_4:41517449-41517468 | None:intergenic | 45.0% |
| ! | GTGGACGCTTTTGTTCATTC+GGG | + | chr3_4:41517450-41517469 | None:intergenic | 45.0% |
| ! | AACTCATGCAGGGACTTGTT+GGG | - | chr3_4:41517622-41517641 | Msa0500890:intron | 45.0% |
| TCTCCCTTACCACTTCATGA+AGG | + | chr3_4:41517702-41517721 | None:intergenic | 45.0% | |
| TGAAGTGGTAAGGGAGAAGT+TGG | - | chr3_4:41517705-41517724 | Msa0500890:CDS | 45.0% | |
| GAAGTGGTAAGGGAGAAGTT+GGG | - | chr3_4:41517706-41517725 | Msa0500890:CDS | 45.0% | |
| AAGTGGTAAGGGAGAAGTTG+GGG | - | chr3_4:41517707-41517726 | Msa0500890:CDS | 45.0% | |
| AAGATAAGTAGGTGCAGCAG+AGG | + | chr3_4:41517875-41517894 | None:intergenic | 45.0% | |
| GTGTGTTGCCTTCTGTATCT+TGG | + | chr3_4:41517918-41517937 | None:intergenic | 45.0% | |
| CACAAACACCGCCATCAATA+AGG | + | chr3_4:41517951-41517970 | None:intergenic | 45.0% | |
| ! | TTGATAATCTCACTGGGCAC+TGG | - | chr3_4:41518173-41518192 | Msa0500890:CDS | 45.0% |
| GCGAAAATGGCAGCAAAATG+GGG | - | chr3_4:41518224-41518243 | Msa0500890:CDS | 45.0% | |
| !! | CTGCTGGATTGGTTAACTCA+CGG | - | chr3_4:41518248-41518267 | Msa0500890:CDS | 45.0% |
| !!! | CCTTTTGAGAGCATCTTGGT+TGG | + | chr3_4:41518627-41518646 | None:intergenic | 45.0% |
| CCAACCAAGATGCTCTCAAA+AGG | - | chr3_4:41518624-41518643 | Msa0500890:CDS | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | + | chr3_4:41517253-41517272 | None:intergenic | 45.0% | |
| !! | CATTGATGGTGGCGGTATAA+GGG | - | chr3_4:41517285-41517304 | Msa0500890:CDS | 45.0% |
| !! | ATTGATGGTGGCGGTATAAG+GGG | - | chr3_4:41517286-41517305 | Msa0500890:CDS | 45.0% |
| AAGGAACTCGAGGATAGTTG+CGG | + | chr3_4:41517320-41517339 | None:intergenic | 45.0% | |
| ATTACAGGAACAAGTACGGG+TGG | - | chr3_4:41517400-41517419 | Msa0500890:intron | 45.0% | |
| ! | TGGACGCTTTTGTTCATTCG+GGG | + | chr3_4:41517449-41517468 | None:intergenic | 45.0% |
| ! | GTGGACGCTTTTGTTCATTC+GGG | + | chr3_4:41517450-41517469 | None:intergenic | 45.0% |
| ! | AACTCATGCAGGGACTTGTT+GGG | - | chr3_4:41517622-41517641 | Msa0500890:intron | 45.0% |
| TCTCCCTTACCACTTCATGA+AGG | + | chr3_4:41517702-41517721 | None:intergenic | 45.0% | |
| TGAAGTGGTAAGGGAGAAGT+TGG | - | chr3_4:41517705-41517724 | Msa0500890:CDS | 45.0% | |
| GAAGTGGTAAGGGAGAAGTT+GGG | - | chr3_4:41517706-41517725 | Msa0500890:CDS | 45.0% | |
| AAGTGGTAAGGGAGAAGTTG+GGG | - | chr3_4:41517707-41517726 | Msa0500890:CDS | 45.0% | |
| AAGATAAGTAGGTGCAGCAG+AGG | + | chr3_4:41517875-41517894 | None:intergenic | 45.0% | |
| GTGTGTTGCCTTCTGTATCT+TGG | + | chr3_4:41517918-41517937 | None:intergenic | 45.0% | |
| CACAAACACCGCCATCAATA+AGG | + | chr3_4:41517951-41517970 | None:intergenic | 45.0% | |
| ! | TTGATAATCTCACTGGGCAC+TGG | - | chr3_4:41518173-41518192 | Msa0500890:CDS | 45.0% |
| GCGAAAATGGCAGCAAAATG+GGG | - | chr3_4:41518224-41518243 | Msa0500890:CDS | 45.0% | |
| !! | CTGCTGGATTGGTTAACTCA+CGG | - | chr3_4:41518248-41518267 | Msa0500890:CDS | 45.0% |
| !!! | CCTTTTGAGAGCATCTTGGT+TGG | + | chr3_4:41518627-41518646 | None:intergenic | 45.0% |
| CCAACCAAGATGCTCTCAAA+AGG | - | chr3_4:41518624-41518643 | Msa0500890:CDS | 45.0% | |
| !! | GCATTGATGGTGGCGGTATA+AGG | - | chr3_4:41517284-41517303 | Msa0500890:CDS | 50.0% |
| AGGAACTCGAGGATAGTTGC+GGG | + | chr3_4:41517319-41517338 | None:intergenic | 50.0% | |
| GTTGCGATTCAAGGAACTCG+AGG | + | chr3_4:41517330-41517349 | None:intergenic | 50.0% | |
| TGGTGAATCTGCTAGGCTTG+CGG | - | chr3_4:41517363-41517382 | Msa0500890:intron | 50.0% | |
| !!! | GCGTCCACTTTTTGCTGCTA+AGG | - | chr3_4:41517462-41517481 | Msa0500890:CDS | 50.0% |
| GAACTCATGCAGGGACTTGT+TGG | - | chr3_4:41517621-41517640 | Msa0500890:intron | 50.0% | |
| !! | AGGGACTTGTTGGGATCAGT+GGG | - | chr3_4:41517631-41517650 | Msa0500890:intron | 50.0% |
| AGTGGTAAGGGAGAAGTTGG+GGG | - | chr3_4:41517708-41517727 | Msa0500890:CDS | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | - | chr3_4:41517834-41517853 | Msa0500890:CDS | 50.0% | |
| GCTGCACCTACTTATCTTCC+AGG | - | chr3_4:41517877-41517896 | Msa0500890:CDS | 50.0% | |
| CAAAATGGGGTCTGCTGGAT+TGG | - | chr3_4:41518237-41518256 | Msa0500890:CDS | 50.0% | |
| !! | CTGGATTGGTTAACTCACGG+TGG | - | chr3_4:41518251-41518270 | Msa0500890:CDS | 50.0% |
| TGTGAGGGGATTTCAACTCG+CGG | + | chr3_4:41518770-41518789 | None:intergenic | 50.0% | |
| !! | GCATTGATGGTGGCGGTATA+AGG | - | chr3_4:41517284-41517303 | Msa0500890:CDS | 50.0% |
| AGGAACTCGAGGATAGTTGC+GGG | + | chr3_4:41517319-41517338 | None:intergenic | 50.0% | |
| GTTGCGATTCAAGGAACTCG+AGG | + | chr3_4:41517330-41517349 | None:intergenic | 50.0% | |
| TGGTGAATCTGCTAGGCTTG+CGG | - | chr3_4:41517363-41517382 | Msa0500890:intron | 50.0% | |
| !!! | GCGTCCACTTTTTGCTGCTA+AGG | - | chr3_4:41517462-41517481 | Msa0500890:CDS | 50.0% |
| GAACTCATGCAGGGACTTGT+TGG | - | chr3_4:41517621-41517640 | Msa0500890:intron | 50.0% | |
| !! | AGGGACTTGTTGGGATCAGT+GGG | - | chr3_4:41517631-41517650 | Msa0500890:intron | 50.0% |
| AGTGGTAAGGGAGAAGTTGG+GGG | - | chr3_4:41517708-41517727 | Msa0500890:CDS | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | - | chr3_4:41517834-41517853 | Msa0500890:CDS | 50.0% | |
| GCTGCACCTACTTATCTTCC+AGG | - | chr3_4:41517877-41517896 | Msa0500890:CDS | 50.0% | |
| CAAAATGGGGTCTGCTGGAT+TGG | - | chr3_4:41518237-41518256 | Msa0500890:CDS | 50.0% | |
| !! | CTGGATTGGTTAACTCACGG+TGG | - | chr3_4:41518251-41518270 | Msa0500890:CDS | 50.0% |
| TGTGAGGGGATTTCAACTCG+CGG | + | chr3_4:41518770-41518789 | None:intergenic | 50.0% | |
| CAGATTCAGCCTCCCACCTA+TGG | - | chr3_4:41517241-41517260 | Msa0500890:exon | 55.0% | |
| !! | CAGGGACTTGTTGGGATCAG+TGG | - | chr3_4:41517630-41517649 | Msa0500890:intron | 55.0% |
| !! | GGGACTTGTTGGGATCAGTG+GGG | - | chr3_4:41517632-41517651 | Msa0500890:intron | 55.0% |
| GAGAGTCGAGCATCCATGCA+AGG | + | chr3_4:41517835-41517854 | None:intergenic | 55.0% | |
| CAGATTCAGCCTCCCACCTA+TGG | - | chr3_4:41517241-41517260 | Msa0500890:exon | 55.0% | |
| !! | CAGGGACTTGTTGGGATCAG+TGG | - | chr3_4:41517630-41517649 | Msa0500890:intron | 55.0% |
| !! | GGGACTTGTTGGGATCAGTG+GGG | - | chr3_4:41517632-41517651 | Msa0500890:intron | 55.0% |
| GAGAGTCGAGCATCCATGCA+AGG | + | chr3_4:41517835-41517854 | None:intergenic | 55.0% | |
| GGCAGCAAAATGGGGTCTGC+TGG | - | chr3_4:41518232-41518251 | Msa0500890:CDS | 60.0% | |
| CTCGAGTGACGGCAGCAAGA+TGG | + | chr3_4:41518331-41518350 | None:intergenic | 60.0% | |
| GGCAGCAAAATGGGGTCTGC+TGG | - | chr3_4:41518232-41518251 | Msa0500890:CDS | 60.0% | |
| CTCGAGTGACGGCAGCAAGA+TGG | + | chr3_4:41518331-41518350 | None:intergenic | 60.0% | |
| CTCGCGGAGCCTCCTCTCTT+GGG | + | chr3_4:41518754-41518773 | None:intergenic | 65.0% | |
| ACTCGCGGAGCCTCCTCTCT+TGG | + | chr3_4:41518755-41518774 | None:intergenic | 65.0% | |
| CTCGCGGAGCCTCCTCTCTT+GGG | + | chr3_4:41518754-41518773 | None:intergenic | 65.0% | |
| ACTCGCGGAGCCTCCTCTCT+TGG | + | chr3_4:41518755-41518774 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41517214 | 41518852 | 41517214 | ID=Msa0500890;Name=Msa0500890 |
| chr3_4 | mRNA | 41517214 | 41518852 | 41517214 | ID=Msa0500890-mRNA-1;Parent=Msa0500890;Name=Msa0500890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.2|1|1|1|5|43|408 |
| chr3_4 | exon | 41517214 | 41517332 | 41517214 | ID=Msa0500890-mRNA-1:exon:8685;Parent=Msa0500890-mRNA-1 |
| chr3_4 | exon | 41517421 | 41517596 | 41517421 | ID=Msa0500890-mRNA-1:exon:8684;Parent=Msa0500890-mRNA-1 |
| chr3_4 | exon | 41517681 | 41517983 | 41517681 | ID=Msa0500890-mRNA-1:exon:8683;Parent=Msa0500890-mRNA-1 |
| chr3_4 | exon | 41518085 | 41518433 | 41518085 | ID=Msa0500890-mRNA-1:exon:8682;Parent=Msa0500890-mRNA-1 |
| chr3_4 | exon | 41518530 | 41518852 | 41518530 | ID=Msa0500890-mRNA-1:exon:8681;Parent=Msa0500890-mRNA-1 |
| chr3_4 | CDS | 41518530 | 41518852 | 41518530 | ID=Msa0500890-mRNA-1:cds;Parent=Msa0500890-mRNA-1 |
| chr3_4 | CDS | 41518085 | 41518433 | 41518085 | ID=Msa0500890-mRNA-1:cds;Parent=Msa0500890-mRNA-1 |
| chr3_4 | CDS | 41517681 | 41517983 | 41517681 | ID=Msa0500890-mRNA-1:cds;Parent=Msa0500890-mRNA-1 |
| chr3_4 | CDS | 41517421 | 41517596 | 41517421 | ID=Msa0500890-mRNA-1:cds;Parent=Msa0500890-mRNA-1 |
| chr3_4 | CDS | 41517257 | 41517332 | 41517257 | ID=Msa0500890-mRNA-1:cds;Parent=Msa0500890-mRNA-1 |
| chr3_4 | three_prime_UTR | 41517214 | 41517256 | 41517214 | ID=Msa0500890-mRNA-1:three_prime_utr;Parent=Msa0500890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
