Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500830 | XP_003603015.1 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500830 | sp|O48723|PLP2_ARATH | 63.772 | 403 | 142 | 2 | 1 | 403 | 3 | 401 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500830 | G7J6A9 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0500770 | Msa0500830 | 0.801039 | 1.086769e-48 | -8.615850e-47 |
| Msa0500830 | Msa0500890 | 0.876624 | 1.204092e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500830 | MtrunA17_Chr3g0133691 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| Msa0500830 | MtrunA17_Chr3g0133681 | 91.176 | 408 | 36 | 0 | 1 | 408 | 1 | 408 | 0.0 | 753 |
| Msa0500830 | MtrunA17_Chr1g0153781 | 78.272 | 405 | 86 | 2 | 4 | 406 | 5 | 409 | 0.0 | 674 |
| Msa0500830 | MtrunA17_Chr5g0402441 | 54.523 | 398 | 173 | 4 | 4 | 399 | 3 | 394 | 5.39e-156 | 446 |
| Msa0500830 | MtrunA17_Chr5g0402451 | 55.614 | 383 | 166 | 3 | 18 | 397 | 8 | 389 | 1.76e-155 | 444 |
| Msa0500830 | MtrunA17_Chr8g0335581 | 44.472 | 398 | 188 | 11 | 10 | 396 | 11 | 386 | 2.35e-102 | 310 |
| Msa0500830 | MtrunA17_Chr8g0335611 | 43.687 | 396 | 194 | 11 | 10 | 396 | 22 | 397 | 7.68e-99 | 301 |
| Msa0500830 | MtrunA17_Chr8g0335621 | 43.687 | 396 | 194 | 11 | 10 | 396 | 53 | 428 | 1.28e-98 | 301 |
| Msa0500830 | MtrunA17_Chr8g0335651 | 47.044 | 389 | 176 | 7 | 10 | 396 | 23 | 383 | 4.28e-97 | 296 |
| Msa0500830 | MtrunA17_Chr8g0335591 | 40.712 | 393 | 208 | 10 | 10 | 396 | 22 | 395 | 4.39e-85 | 265 |
| Msa0500830 | MtrunA17_Chr8g0335631 | 42.386 | 394 | 198 | 10 | 10 | 396 | 22 | 393 | 5.84e-85 | 265 |
| Msa0500830 | MtrunA17_Chr1g0199801 | 30.203 | 394 | 241 | 12 | 20 | 399 | 75 | 448 | 1.31e-43 | 158 |
| Msa0500830 | MtrunA17_Chr7g0259871 | 28.269 | 283 | 184 | 8 | 22 | 299 | 32 | 300 | 7.90e-28 | 113 |
| Msa0500830 | MtrunA17_Chr1g0185551 | 26.377 | 345 | 207 | 11 | 22 | 355 | 32 | 340 | 2.30e-27 | 112 |
| Msa0500830 | MtrunA17_Chr2g0292051 | 28.756 | 386 | 216 | 18 | 20 | 397 | 69 | 403 | 2.42e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500830 | AT2G26560.1 | 63.772 | 403 | 142 | 2 | 1 | 403 | 3 | 401 | 0.0 | 529 |
| Msa0500830 | AT4G37070.2 | 59.126 | 389 | 159 | 0 | 12 | 400 | 11 | 399 | 9.06e-170 | 481 |
| Msa0500830 | AT4G37060.1 | 57.252 | 393 | 168 | 0 | 13 | 405 | 12 | 404 | 3.28e-165 | 470 |
| Msa0500830 | AT4G37050.1 | 58.578 | 408 | 157 | 3 | 2 | 401 | 21 | 424 | 1.41e-164 | 469 |
| Msa0500830 | AT4G37070.3 | 58.713 | 373 | 154 | 0 | 12 | 384 | 11 | 383 | 1.07e-160 | 457 |
| Msa0500830 | AT4G37070.1 | 58.713 | 373 | 154 | 0 | 12 | 384 | 11 | 383 | 1.07e-160 | 457 |
| Msa0500830 | AT4G37060.2 | 53.066 | 424 | 168 | 1 | 13 | 405 | 12 | 435 | 2.10e-158 | 454 |
| Msa0500830 | AT4G37070.4 | 56.568 | 373 | 151 | 1 | 12 | 384 | 11 | 372 | 1.89e-151 | 433 |
| Msa0500830 | AT5G43590.1 | 53.728 | 389 | 169 | 5 | 12 | 396 | 6 | 387 | 4.58e-128 | 375 |
| Msa0500830 | AT5G43590.2 | 53.728 | 389 | 169 | 5 | 12 | 396 | 73 | 454 | 4.71e-127 | 375 |
| Msa0500830 | AT4G29800.1 | 28.500 | 400 | 249 | 15 | 20 | 403 | 121 | 499 | 1.39e-37 | 143 |
| Msa0500830 | AT4G29800.2 | 28.429 | 401 | 249 | 15 | 20 | 403 | 121 | 500 | 1.98e-37 | 142 |
| Msa0500830 | AT2G39220.1 | 29.124 | 388 | 243 | 14 | 20 | 399 | 108 | 471 | 2.73e-37 | 142 |
| Msa0500830 | AT3G54950.1 | 30.252 | 357 | 215 | 12 | 20 | 369 | 98 | 427 | 4.10e-37 | 141 |
| Msa0500830 | AT3G63200.1 | 29.524 | 315 | 190 | 12 | 22 | 330 | 32 | 320 | 2.85e-32 | 126 |
Find 101 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTTGGGAAAGTATTT+TGG | 0.144450 | 3_4:-41394117 | None:intergenic |
| GCATTGATGGTGGCGGTATA+AGG | 0.221210 | 3_4:+41392662 | Msa0500830:CDS |
| TCAACAATTTGTCACCAATT+TGG | 0.229429 | 3_4:-41393916 | None:intergenic |
| ATGTTTGAGCCAATTGAAAA+TGG | 0.253040 | 3_4:+41393974 | Msa0500830:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3_4:-41393174 | None:intergenic |
| AGGTATTTCCCATCATATTT+TGG | 0.273356 | 3_4:-41393057 | None:intergenic |
| TTGACTAAACATGTCGATTA+AGG | 0.277813 | 3_4:-41393660 | None:intergenic |
| ATGCGAAAATGGCAGCAAAA+TGG | 0.281352 | 3_4:+41393600 | Msa0500830:CDS |
| GCTATATTCCATTGGCTTGA+TGG | 0.290285 | 3_4:-41393522 | None:intergenic |
| GGAGAGTGTTCCAAGTAAAA+TGG | 0.292232 | 3_4:-41392871 | None:intergenic |
| TAGTCAATCATCAGCTGATA+TGG | 0.302481 | 3_4:+41393676 | Msa0500830:CDS |
| CATTGATGGTGGCGGTATAA+GGG | 0.333516 | 3_4:+41392663 | Msa0500830:CDS |
| TGCGAAAATGGCAGCAAAAT+GGG | 0.333561 | 3_4:+41393601 | Msa0500830:CDS |
| GATTACTTTGATGTGATTAC+AGG | 0.334035 | 3_4:+41392763 | Msa0500830:CDS |
| GATGATATTTCAGACTTTAG+TGG | 0.338291 | 3_4:+41393448 | Msa0500830:intron |
| GTGTGTTGCCTTCTGTATCT+TGG | 0.340354 | 3_4:-41393293 | None:intergenic |
| CACAAACACCGCCATCAATA+AGG | 0.340884 | 3_4:-41393326 | None:intergenic |
| TTATGTTGTGGAAAGATCTT+AGG | 0.343987 | 3_4:-41392892 | None:intergenic |
| ACAAAAGTTCAATGCGAAAA+TGG | 0.352216 | 3_4:+41393589 | Msa0500830:CDS |
| CATGAATTCAACCTTATTGA+TGG | 0.370800 | 3_4:+41393315 | Msa0500830:CDS |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3_4:-41392714 | None:intergenic |
| GCTGCACCTACTTATCTTCC+AGG | 0.379184 | 3_4:+41393255 | Msa0500830:CDS |
| ACTCGCGGAGCCTCCTCTCT+TGG | 0.386057 | 3_4:-41394130 | None:intergenic |
| GGCAGCAAAATGGGGTCTGC+TGG | 0.394148 | 3_4:+41393610 | Msa0500830:CDS |
| TGAAGTGGTAAGGGAGAAGT+TGG | 0.397346 | 3_4:+41393083 | Msa0500830:CDS |
| GAACTCATGCAGGGACTTGT+TGG | 0.403597 | 3_4:+41392999 | Msa0500830:intron |
| GTTGAAGAAACCAGTCTCTA+AGG | 0.407068 | 3_4:+41393934 | Msa0500830:CDS |
| CAAAATGGGGTCTGCTGGAT+TGG | 0.411164 | 3_4:+41393615 | Msa0500830:CDS |
| TGTTTGAGCCAATTGAAAAT+GGG | 0.414266 | 3_4:+41393975 | Msa0500830:CDS |
| CAGATTCAGCCTCCCACCTA+TGG | 0.421293 | 3_4:+41392619 | Msa0500830:CDS |
| CTCGCGGAGCCTCCTCTCTT+GGG | 0.424985 | 3_4:-41394129 | None:intergenic |
| AACTCATGCAGGGACTTGTT+GGG | 0.426138 | 3_4:+41393000 | Msa0500830:intron |
| GAAGTGGTAAGGGAGAAGTT+GGG | 0.431386 | 3_4:+41393084 | Msa0500830:CDS |
| GTGACTATACTAAGCATTGA+TGG | 0.439641 | 3_4:+41392649 | Msa0500830:CDS |
| TTGATAATCTCACTGGGCAC+TGG | 0.445741 | 3_4:+41393551 | Msa0500830:CDS |
| CCGTTTCTTGATAATCTCAC+TGG | 0.457904 | 3_4:+41393544 | Msa0500830:CDS |
| TCGCAACTTCAAGAATTAGA+TGG | 0.459099 | 3_4:+41392721 | Msa0500830:CDS |
| ACATAATTACCTACGGATAC+AGG | 0.468841 | 3_4:+41393742 | Msa0500830:CDS |
| CAGGGACTTGTTGGGATCAG+TGG | 0.475838 | 3_4:+41393008 | Msa0500830:intron |
| AGGAACTCGAGGATAGTTGC+GGG | 0.480109 | 3_4:-41392694 | None:intergenic |
| TGACTAAACATGTCGATTAA+GGG | 0.483825 | 3_4:-41393659 | None:intergenic |
| AATACCTTCATGAAGTGGTA+AGG | 0.488193 | 3_4:+41393073 | Msa0500830:CDS |
| CGGTGTTTGTGCAAATAATC+CGG | 0.488784 | 3_4:+41393338 | Msa0500830:CDS |
| TCTAAGGTCAATTTAGAGAA+TGG | 0.490927 | 3_4:+41393950 | Msa0500830:CDS |
| AAGTGGTAAGGGAGAAGTTG+GGG | 0.499535 | 3_4:+41393085 | Msa0500830:CDS |
| TTAAAGCTTTATTAGTGTGA+GGG | 0.500043 | 3_4:-41394160 | None:intergenic |
| CCAAAATACTTTCCCAAGAG+AGG | 0.501656 | 3_4:+41394117 | Msa0500830:CDS |
| AGGGACTTGTTGGGATCAGT+GGG | 0.501975 | 3_4:+41393009 | Msa0500830:intron |
| CCAACCAAGATGCTCTCAAA+AGG | 0.502859 | 3_4:+41394002 | Msa0500830:CDS |
| TCTAAATTGACCTTAGAGAC+TGG | 0.503415 | 3_4:-41393944 | None:intergenic |
| TTGTAGCCTGGAAGATAAGT+AGG | 0.509381 | 3_4:-41393261 | None:intergenic |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3_4:+41393212 | Msa0500830:CDS |
| CTCGAGTGACGGCAGCAAGA+TGG | 0.516447 | 3_4:-41393706 | None:intergenic |
| GATCAAGAAAACTCCTTGCA+TGG | 0.518456 | 3_4:+41393197 | Msa0500830:CDS |
| TTAGCAGGACCAAAATATGA+TGG | 0.523003 | 3_4:+41393048 | Msa0500830:CDS |
| AGATATTCGTACTTATGTTG+TGG | 0.539635 | 3_4:-41392904 | None:intergenic |
| AAGAAACGGCTATATTCCAT+TGG | 0.541585 | 3_4:-41393530 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.542739 | 3_4:-41392632 | None:intergenic |
| TGGTTCTTGAAATTGTAGCC+TGG | 0.542827 | 3_4:-41393273 | None:intergenic |
| TATAGTCACTAAGTTTCCAT+AGG | 0.546556 | 3_4:-41392635 | None:intergenic |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3_4:-41392631 | None:intergenic |
| CCAGTGAGATTATCAAGAAA+CGG | 0.553943 | 3_4:-41393544 | None:intergenic |
| TGTGATTACAGGAACAAGTA+CGG | 0.557423 | 3_4:+41392774 | Msa0500830:CDS |
| ATTAAAGCTTTATTAGTGTG+AGG | 0.557747 | 3_4:-41394161 | None:intergenic |
| ATTCACAACATAATTACCTA+CGG | 0.562378 | 3_4:+41393735 | Msa0500830:CDS |
| TAAAGCTTTATTAGTGTGAG+GGG | 0.564782 | 3_4:-41394159 | None:intergenic |
| CGTTTCTTGATAATCTCACT+GGG | 0.566181 | 3_4:+41393545 | Msa0500830:CDS |
| GCGAAAATGGCAGCAAAATG+GGG | 0.566216 | 3_4:+41393602 | Msa0500830:CDS |
| AAATTGTTCAGATCATTAGC+AGG | 0.566843 | 3_4:+41393033 | Msa0500830:CDS |
| AATGCAGGATGATACATTGA+CGG | 0.567386 | 3_4:+41393841 | Msa0500830:intron |
| AATTAGATGGTGAATCTGCT+AGG | 0.567945 | 3_4:+41392734 | Msa0500830:CDS |
| CTTCTATTCCATCAAGCCAA+TGG | 0.568706 | 3_4:+41393514 | Msa0500830:CDS |
| ATTGATGGTGGCGGTATAAG+GGG | 0.574647 | 3_4:+41392664 | Msa0500830:CDS |
| TAGCAGGACCAAAATATGAT+GGG | 0.575443 | 3_4:+41393049 | Msa0500830:CDS |
| TCTCCCTTACCACTTCATGA+AGG | 0.576054 | 3_4:-41393077 | None:intergenic |
| AAGATAAGTAGGTGCAGCAG+AGG | 0.577597 | 3_4:-41393250 | None:intergenic |
| TGAATTAAGTGCTCGAGTGA+CGG | 0.577920 | 3_4:-41393717 | None:intergenic |
| GTTTGAGCCAATTGAAAATG+GGG | 0.578259 | 3_4:+41393976 | Msa0500830:CDS |
| ATACCTTCATGAAGTGGTAA+GGG | 0.581117 | 3_4:+41393074 | Msa0500830:CDS |
| GTGATTACAGGAACAAGTAC+GGG | 0.582488 | 3_4:+41392775 | Msa0500830:CDS |
| CTGCTGGATTGGTTAACTCA+CGG | 0.586370 | 3_4:+41393626 | Msa0500830:CDS |
| ATGCAGGATGATACATTGAC+GGG | 0.587863 | 3_4:+41393842 | Msa0500830:intron |
| TGGTGAATCTGCTAGGCTTG+CGG | 0.599282 | 3_4:+41392741 | Msa0500830:CDS |
| TGGGAAATACCTTCATGAAG+TGG | 0.608258 | 3_4:+41393068 | Msa0500830:CDS |
| AAGGAACTCGAGGATAGTTG+CGG | 0.612182 | 3_4:-41392695 | None:intergenic |
| ATACTAAGCATTGATGGTGG+CGG | 0.616430 | 3_4:+41392655 | Msa0500830:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.625469 | 3_4:-41393210 | None:intergenic |
| TTCAAGAACCAAGATACAGA+AGG | 0.625819 | 3_4:+41393285 | Msa0500830:CDS |
| GTTGCGATTCAAGGAACTCG+AGG | 0.637528 | 3_4:-41392705 | None:intergenic |
| CTAAGAATTCACAAGCAATG+AGG | 0.645552 | 3_4:-41394202 | None:intergenic |
| AAATGTGGGAATCACAATGT+TGG | 0.650439 | 3_4:-41393133 | None:intergenic |
| AGTGGTAAGGGAGAAGTTGG+GGG | 0.653344 | 3_4:+41393086 | Msa0500830:CDS |
| AAATACTTTCCCAAGAGAGG+AGG | 0.658189 | 3_4:+41394120 | Msa0500830:CDS |
| ATAATTGTACCTGTATCCGT+AGG | 0.659663 | 3_4:-41393751 | None:intergenic |
| GAATTCAACCTTATTGATGG+CGG | 0.688975 | 3_4:+41393318 | Msa0500830:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3_4:-41392628 | None:intergenic |
| TGTGAGGGGATTTCAACTCG+CGG | 0.697585 | 3_4:-41394145 | None:intergenic |
| ATTACAGGAACAAGTACGGG+TGG | 0.711093 | 3_4:+41392778 | Msa0500830:CDS |
| ACTATACTAAGCATTGATGG+TGG | 0.712098 | 3_4:+41392652 | Msa0500830:CDS |
| CTGGATTGGTTAACTCACGG+TGG | 0.721558 | 3_4:+41393629 | Msa0500830:CDS |
| GGGACTTGTTGGGATCAGTG+GGG | 0.764722 | 3_4:+41393010 | Msa0500830:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTTACAAAATGT+CGG | - | chr3_4:41392960-41392979 | None:intergenic | 10.0% |
| !! | AATATTTATAGTATATATAC+CGG | - | chr3_4:41393360-41393379 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTTACAAAATGT+CGG | - | chr3_4:41392960-41392979 | None:intergenic | 10.0% |
| !! | AATATTTATAGTATATATAC+CGG | - | chr3_4:41393360-41393379 | None:intergenic | 10.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | - | chr3_4:41393177-41393196 | None:intergenic | 15.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | - | chr3_4:41393177-41393196 | None:intergenic | 15.0% |
| !!! | ATTGTTTTTATGTCAAATGT+GGG | - | chr3_4:41393150-41393169 | None:intergenic | 20.0% |
| !! | TAATTGTGTATTAAAAATGC+AGG | + | chr3_4:41393826-41393845 | Msa0500830:intron | 20.0% |
| !!! | TTTTTCTAAATTCTCTTTTG+TGG | - | chr3_4:41393891-41393910 | None:intergenic | 20.0% |
| !! | TTAGTCATTTAATCACATAA+TGG | - | chr3_4:41394070-41394089 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATGTCAAATGT+GGG | - | chr3_4:41393150-41393169 | None:intergenic | 20.0% |
| !! | TAATTGTGTATTAAAAATGC+AGG | + | chr3_4:41393826-41393845 | Msa0500830:intron | 20.0% |
| !!! | TTTTTCTAAATTCTCTTTTG+TGG | - | chr3_4:41393891-41393910 | None:intergenic | 20.0% |
| !! | TTAGTCATTTAATCACATAA+TGG | - | chr3_4:41394070-41394089 | None:intergenic | 20.0% |
| ! | ATAAATATTTGAACTCATGC+AGG | + | chr3_4:41392989-41393008 | Msa0500830:intron | 25.0% |
| ! | TAAATATTTGAACTCATGCA+GGG | + | chr3_4:41392990-41393009 | Msa0500830:intron | 25.0% |
| !!! | CATTGTTTTTATGTCAAATG+TGG | - | chr3_4:41393151-41393170 | None:intergenic | 25.0% |
| !!! | ATTGAATAACCAGTTGTTTT+TGG | + | chr3_4:41393377-41393396 | Msa0500830:intron | 25.0% |
| !! | TTGAACTTTTGTTCATTCTT+GGG | - | chr3_4:41393581-41393600 | None:intergenic | 25.0% |
| !! | ATTGAACTTTTGTTCATTCT+TGG | - | chr3_4:41393582-41393601 | None:intergenic | 25.0% |
| ! | ATTCACAACATAATTACCTA+CGG | + | chr3_4:41393735-41393754 | Msa0500830:CDS | 25.0% |
| ! | TTAGTAGTGTTTACATATGT+GGG | - | chr3_4:41393784-41393803 | None:intergenic | 25.0% |
| ! | ATTAGTAGTGTTTACATATG+TGG | - | chr3_4:41393785-41393804 | None:intergenic | 25.0% |
| ! | TTAGAAAAACTTTGCCAAAT+TGG | + | chr3_4:41393902-41393921 | Msa0500830:CDS | 25.0% |
| !!! | ACATTTGTTTTAATCTTTGC+AGG | + | chr3_4:41394090-41394109 | Msa0500830:intron | 25.0% |
| !!! | TTAAAGCTTTATTAGTGTGA+GGG | - | chr3_4:41394163-41394182 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTTTATTAGTGTG+AGG | - | chr3_4:41394164-41394183 | None:intergenic | 25.0% |
| ! | ATAAATATTTGAACTCATGC+AGG | + | chr3_4:41392989-41393008 | Msa0500830:intron | 25.0% |
| ! | TAAATATTTGAACTCATGCA+GGG | + | chr3_4:41392990-41393009 | Msa0500830:intron | 25.0% |
| !!! | CATTGTTTTTATGTCAAATG+TGG | - | chr3_4:41393151-41393170 | None:intergenic | 25.0% |
| !!! | ATTGAATAACCAGTTGTTTT+TGG | + | chr3_4:41393377-41393396 | Msa0500830:intron | 25.0% |
| !! | TTGAACTTTTGTTCATTCTT+GGG | - | chr3_4:41393581-41393600 | None:intergenic | 25.0% |
| !! | ATTGAACTTTTGTTCATTCT+TGG | - | chr3_4:41393582-41393601 | None:intergenic | 25.0% |
| ! | ATTCACAACATAATTACCTA+CGG | + | chr3_4:41393735-41393754 | Msa0500830:CDS | 25.0% |
| ! | TTAGTAGTGTTTACATATGT+GGG | - | chr3_4:41393784-41393803 | None:intergenic | 25.0% |
| ! | ATTAGTAGTGTTTACATATG+TGG | - | chr3_4:41393785-41393804 | None:intergenic | 25.0% |
| ! | TTAGAAAAACTTTGCCAAAT+TGG | + | chr3_4:41393902-41393921 | Msa0500830:CDS | 25.0% |
| !!! | ACATTTGTTTTAATCTTTGC+AGG | + | chr3_4:41394090-41394109 | Msa0500830:intron | 25.0% |
| !!! | TTAAAGCTTTATTAGTGTGA+GGG | - | chr3_4:41394163-41394182 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTTTATTAGTGTG+AGG | - | chr3_4:41394164-41394183 | None:intergenic | 25.0% |
| TATAGTCACTAAGTTTCCAT+AGG | - | chr3_4:41392638-41392657 | None:intergenic | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | + | chr3_4:41392763-41392782 | Msa0500830:CDS | 30.0% | |
| ! | GGATATCAAACCATTTTACT+TGG | + | chr3_4:41392861-41392880 | Msa0500830:CDS | 30.0% |
| TTATGTTGTGGAAAGATCTT+AGG | - | chr3_4:41392895-41392914 | None:intergenic | 30.0% | |
| AGATATTCGTACTTATGTTG+TGG | - | chr3_4:41392907-41392926 | None:intergenic | 30.0% | |
| AAATTGTTCAGATCATTAGC+AGG | + | chr3_4:41393033-41393052 | Msa0500830:CDS | 30.0% | |
| ! | AGGTATTTCCCATCATATTT+TGG | - | chr3_4:41393060-41393079 | None:intergenic | 30.0% |
| CATGAATTCAACCTTATTGA+TGG | + | chr3_4:41393315-41393334 | Msa0500830:CDS | 30.0% | |
| ! | GTTTGATTTCCAAAAACAAC+TGG | - | chr3_4:41393389-41393408 | None:intergenic | 30.0% |
| GATGATATTTCAGACTTTAG+TGG | + | chr3_4:41393448-41393467 | Msa0500830:intron | 30.0% | |
| ACAAAAGTTCAATGCGAAAA+TGG | + | chr3_4:41393589-41393608 | Msa0500830:CDS | 30.0% | |
| ! | TGACTAAACATGTCGATTAA+GGG | - | chr3_4:41393662-41393681 | None:intergenic | 30.0% |
| ! | TTGACTAAACATGTCGATTA+AGG | - | chr3_4:41393663-41393682 | None:intergenic | 30.0% |
| TAGTAGTGTTTACATATGTG+GGG | - | chr3_4:41393783-41393802 | None:intergenic | 30.0% | |
| TCAACAATTTGTCACCAATT+TGG | - | chr3_4:41393919-41393938 | None:intergenic | 30.0% | |
| ! | TCTAAGGTCAATTTAGAGAA+TGG | + | chr3_4:41393950-41393969 | Msa0500830:CDS | 30.0% |
| ATGTTTGAGCCAATTGAAAA+TGG | + | chr3_4:41393974-41393993 | Msa0500830:CDS | 30.0% | |
| TGTTTGAGCCAATTGAAAAT+GGG | + | chr3_4:41393975-41393994 | Msa0500830:CDS | 30.0% | |
| !! | TAAAGCTTTATTAGTGTGAG+GGG | - | chr3_4:41394162-41394181 | None:intergenic | 30.0% |
| TATAGTCACTAAGTTTCCAT+AGG | - | chr3_4:41392638-41392657 | None:intergenic | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | + | chr3_4:41392763-41392782 | Msa0500830:CDS | 30.0% | |
| ! | GGATATCAAACCATTTTACT+TGG | + | chr3_4:41392861-41392880 | Msa0500830:CDS | 30.0% |
| TTATGTTGTGGAAAGATCTT+AGG | - | chr3_4:41392895-41392914 | None:intergenic | 30.0% | |
| AGATATTCGTACTTATGTTG+TGG | - | chr3_4:41392907-41392926 | None:intergenic | 30.0% | |
| AAATTGTTCAGATCATTAGC+AGG | + | chr3_4:41393033-41393052 | Msa0500830:CDS | 30.0% | |
| ! | AGGTATTTCCCATCATATTT+TGG | - | chr3_4:41393060-41393079 | None:intergenic | 30.0% |
| CATGAATTCAACCTTATTGA+TGG | + | chr3_4:41393315-41393334 | Msa0500830:CDS | 30.0% | |
| ! | GTTTGATTTCCAAAAACAAC+TGG | - | chr3_4:41393389-41393408 | None:intergenic | 30.0% |
| GATGATATTTCAGACTTTAG+TGG | + | chr3_4:41393448-41393467 | Msa0500830:intron | 30.0% | |
| ACAAAAGTTCAATGCGAAAA+TGG | + | chr3_4:41393589-41393608 | Msa0500830:CDS | 30.0% | |
| ! | TGACTAAACATGTCGATTAA+GGG | - | chr3_4:41393662-41393681 | None:intergenic | 30.0% |
| ! | TTGACTAAACATGTCGATTA+AGG | - | chr3_4:41393663-41393682 | None:intergenic | 30.0% |
| TAGTAGTGTTTACATATGTG+GGG | - | chr3_4:41393783-41393802 | None:intergenic | 30.0% | |
| TCAACAATTTGTCACCAATT+TGG | - | chr3_4:41393919-41393938 | None:intergenic | 30.0% | |
| ! | TCTAAGGTCAATTTAGAGAA+TGG | + | chr3_4:41393950-41393969 | Msa0500830:CDS | 30.0% |
| ATGTTTGAGCCAATTGAAAA+TGG | + | chr3_4:41393974-41393993 | Msa0500830:CDS | 30.0% | |
| TGTTTGAGCCAATTGAAAAT+GGG | + | chr3_4:41393975-41393994 | Msa0500830:CDS | 30.0% | |
| !! | TAAAGCTTTATTAGTGTGAG+GGG | - | chr3_4:41394162-41394181 | None:intergenic | 30.0% |
| !! | GTGACTATACTAAGCATTGA+TGG | + | chr3_4:41392649-41392668 | Msa0500830:CDS | 35.0% |
| !! | ACTATACTAAGCATTGATGG+TGG | + | chr3_4:41392652-41392671 | Msa0500830:CDS | 35.0% |
| ATTCTTGAAGTTGCGATTCA+AGG | - | chr3_4:41392717-41392736 | None:intergenic | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | + | chr3_4:41392721-41392740 | Msa0500830:CDS | 35.0% | |
| AATTAGATGGTGAATCTGCT+AGG | + | chr3_4:41392734-41392753 | Msa0500830:CDS | 35.0% | |
| TGTGATTACAGGAACAAGTA+CGG | + | chr3_4:41392774-41392793 | Msa0500830:CDS | 35.0% | |
| ATATCCTTAGCAGCAAAAAG+TGG | - | chr3_4:41392847-41392866 | None:intergenic | 35.0% | |
| TTAGCAGGACCAAAATATGA+TGG | + | chr3_4:41393048-41393067 | Msa0500830:CDS | 35.0% | |
| TAGCAGGACCAAAATATGAT+GGG | + | chr3_4:41393049-41393068 | Msa0500830:CDS | 35.0% | |
| AATACCTTCATGAAGTGGTA+AGG | + | chr3_4:41393073-41393092 | Msa0500830:CDS | 35.0% | |
| ATACCTTCATGAAGTGGTAA+GGG | + | chr3_4:41393074-41393093 | Msa0500830:CDS | 35.0% | |
| AAATGTGGGAATCACAATGT+TGG | - | chr3_4:41393136-41393155 | None:intergenic | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | + | chr3_4:41393285-41393304 | Msa0500830:CDS | 35.0% | |
| GAATTCAACCTTATTGATGG+CGG | + | chr3_4:41393318-41393337 | Msa0500830:CDS | 35.0% | |
| AAGAAACGGCTATATTCCAT+TGG | - | chr3_4:41393533-41393552 | None:intergenic | 35.0% | |
| CCAGTGAGATTATCAAGAAA+CGG | - | chr3_4:41393547-41393566 | None:intergenic | 35.0% | |
| ! | CGTTTCTTGATAATCTCACT+GGG | + | chr3_4:41393545-41393564 | Msa0500830:CDS | 35.0% |
| TAGTCAATCATCAGCTGATA+TGG | + | chr3_4:41393676-41393695 | Msa0500830:CDS | 35.0% | |
| ACATAATTACCTACGGATAC+AGG | + | chr3_4:41393742-41393761 | Msa0500830:CDS | 35.0% | |
| ATAATTGTACCTGTATCCGT+AGG | - | chr3_4:41393754-41393773 | None:intergenic | 35.0% | |
| AATGCAGGATGATACATTGA+CGG | + | chr3_4:41393841-41393860 | Msa0500830:intron | 35.0% | |
| TCTAAATTGACCTTAGAGAC+TGG | - | chr3_4:41393947-41393966 | None:intergenic | 35.0% | |
| GTTTGAGCCAATTGAAAATG+GGG | + | chr3_4:41393976-41393995 | Msa0500830:CDS | 35.0% | |
| ! | TTGGTTTCCCCATTTTCAAT+TGG | - | chr3_4:41393986-41394005 | None:intergenic | 35.0% |
| !!! | TTTACCTTTTGAGAGCATCT+TGG | - | chr3_4:41394009-41394028 | None:intergenic | 35.0% |
| CTAAGAATTCACAAGCAATG+AGG | - | chr3_4:41394205-41394224 | None:intergenic | 35.0% | |
| !! | GTGACTATACTAAGCATTGA+TGG | + | chr3_4:41392649-41392668 | Msa0500830:CDS | 35.0% |
| !! | ACTATACTAAGCATTGATGG+TGG | + | chr3_4:41392652-41392671 | Msa0500830:CDS | 35.0% |
| ATTCTTGAAGTTGCGATTCA+AGG | - | chr3_4:41392717-41392736 | None:intergenic | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | + | chr3_4:41392721-41392740 | Msa0500830:CDS | 35.0% | |
| AATTAGATGGTGAATCTGCT+AGG | + | chr3_4:41392734-41392753 | Msa0500830:CDS | 35.0% | |
| TGTGATTACAGGAACAAGTA+CGG | + | chr3_4:41392774-41392793 | Msa0500830:CDS | 35.0% | |
| ATATCCTTAGCAGCAAAAAG+TGG | - | chr3_4:41392847-41392866 | None:intergenic | 35.0% | |
| TTAGCAGGACCAAAATATGA+TGG | + | chr3_4:41393048-41393067 | Msa0500830:CDS | 35.0% | |
| TAGCAGGACCAAAATATGAT+GGG | + | chr3_4:41393049-41393068 | Msa0500830:CDS | 35.0% | |
| AATACCTTCATGAAGTGGTA+AGG | + | chr3_4:41393073-41393092 | Msa0500830:CDS | 35.0% | |
| ATACCTTCATGAAGTGGTAA+GGG | + | chr3_4:41393074-41393093 | Msa0500830:CDS | 35.0% | |
| AAATGTGGGAATCACAATGT+TGG | - | chr3_4:41393136-41393155 | None:intergenic | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | + | chr3_4:41393285-41393304 | Msa0500830:CDS | 35.0% | |
| GAATTCAACCTTATTGATGG+CGG | + | chr3_4:41393318-41393337 | Msa0500830:CDS | 35.0% | |
| AAGAAACGGCTATATTCCAT+TGG | - | chr3_4:41393533-41393552 | None:intergenic | 35.0% | |
| CCAGTGAGATTATCAAGAAA+CGG | - | chr3_4:41393547-41393566 | None:intergenic | 35.0% | |
| ! | CGTTTCTTGATAATCTCACT+GGG | + | chr3_4:41393545-41393564 | Msa0500830:CDS | 35.0% |
| TAGTCAATCATCAGCTGATA+TGG | + | chr3_4:41393676-41393695 | Msa0500830:CDS | 35.0% | |
| ACATAATTACCTACGGATAC+AGG | + | chr3_4:41393742-41393761 | Msa0500830:CDS | 35.0% | |
| ATAATTGTACCTGTATCCGT+AGG | - | chr3_4:41393754-41393773 | None:intergenic | 35.0% | |
| AATGCAGGATGATACATTGA+CGG | + | chr3_4:41393841-41393860 | Msa0500830:intron | 35.0% | |
| TCTAAATTGACCTTAGAGAC+TGG | - | chr3_4:41393947-41393966 | None:intergenic | 35.0% | |
| GTTTGAGCCAATTGAAAATG+GGG | + | chr3_4:41393976-41393995 | Msa0500830:CDS | 35.0% | |
| ! | TTGGTTTCCCCATTTTCAAT+TGG | - | chr3_4:41393986-41394005 | None:intergenic | 35.0% |
| !!! | TTTACCTTTTGAGAGCATCT+TGG | - | chr3_4:41394009-41394028 | None:intergenic | 35.0% |
| CTAAGAATTCACAAGCAATG+AGG | - | chr3_4:41394205-41394224 | None:intergenic | 35.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | - | chr3_4:41392634-41392653 | None:intergenic | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | - | chr3_4:41392635-41392654 | None:intergenic | 40.0% | |
| !! | ATACTAAGCATTGATGGTGG+CGG | + | chr3_4:41392655-41392674 | Msa0500830:CDS | 40.0% |
| GTGATTACAGGAACAAGTAC+GGG | + | chr3_4:41392775-41392794 | Msa0500830:CDS | 40.0% | |
| ! | AGTGGACGCTTTTGTTCATT+CGG | - | chr3_4:41392829-41392848 | None:intergenic | 40.0% |
| !! | GGAGAGTGTTCCAAGTAAAA+TGG | - | chr3_4:41392874-41392893 | None:intergenic | 40.0% |
| TGGGAAATACCTTCATGAAG+TGG | + | chr3_4:41393068-41393087 | Msa0500830:CDS | 40.0% | |
| GATCAAGAAAACTCCTTGCA+TGG | + | chr3_4:41393197-41393216 | Msa0500830:CDS | 40.0% | |
| TTGTAGCCTGGAAGATAAGT+AGG | - | chr3_4:41393264-41393283 | None:intergenic | 40.0% | |
| TGGTTCTTGAAATTGTAGCC+TGG | - | chr3_4:41393276-41393295 | None:intergenic | 40.0% | |
| CGGTGTTTGTGCAAATAATC+CGG | + | chr3_4:41393338-41393357 | Msa0500830:CDS | 40.0% | |
| CTTCTATTCCATCAAGCCAA+TGG | + | chr3_4:41393514-41393533 | Msa0500830:CDS | 40.0% | |
| !! | GCTATATTCCATTGGCTTGA+TGG | - | chr3_4:41393525-41393544 | None:intergenic | 40.0% |
| ! | CCGTTTCTTGATAATCTCAC+TGG | + | chr3_4:41393544-41393563 | Msa0500830:CDS | 40.0% |
| ATGCGAAAATGGCAGCAAAA+TGG | + | chr3_4:41393600-41393619 | Msa0500830:CDS | 40.0% | |
| TGCGAAAATGGCAGCAAAAT+GGG | + | chr3_4:41393601-41393620 | Msa0500830:CDS | 40.0% | |
| TGAATTAAGTGCTCGAGTGA+CGG | - | chr3_4:41393720-41393739 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+GGG | + | chr3_4:41393842-41393861 | Msa0500830:intron | 40.0% | |
| GTTGAAGAAACCAGTCTCTA+AGG | + | chr3_4:41393934-41393953 | Msa0500830:CDS | 40.0% | |
| !!! | CCTCTCTTGGGAAAGTATTT+TGG | - | chr3_4:41394120-41394139 | None:intergenic | 40.0% |
| CCAAAATACTTTCCCAAGAG+AGG | + | chr3_4:41394117-41394136 | Msa0500830:CDS | 40.0% | |
| AAATACTTTCCCAAGAGAGG+AGG | + | chr3_4:41394120-41394139 | Msa0500830:CDS | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | - | chr3_4:41392634-41392653 | None:intergenic | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | - | chr3_4:41392635-41392654 | None:intergenic | 40.0% | |
| !! | ATACTAAGCATTGATGGTGG+CGG | + | chr3_4:41392655-41392674 | Msa0500830:CDS | 40.0% |
| GTGATTACAGGAACAAGTAC+GGG | + | chr3_4:41392775-41392794 | Msa0500830:CDS | 40.0% | |
| ! | AGTGGACGCTTTTGTTCATT+CGG | - | chr3_4:41392829-41392848 | None:intergenic | 40.0% |
| !! | GGAGAGTGTTCCAAGTAAAA+TGG | - | chr3_4:41392874-41392893 | None:intergenic | 40.0% |
| TGGGAAATACCTTCATGAAG+TGG | + | chr3_4:41393068-41393087 | Msa0500830:CDS | 40.0% | |
| GATCAAGAAAACTCCTTGCA+TGG | + | chr3_4:41393197-41393216 | Msa0500830:CDS | 40.0% | |
| TTGTAGCCTGGAAGATAAGT+AGG | - | chr3_4:41393264-41393283 | None:intergenic | 40.0% | |
| TGGTTCTTGAAATTGTAGCC+TGG | - | chr3_4:41393276-41393295 | None:intergenic | 40.0% | |
| CGGTGTTTGTGCAAATAATC+CGG | + | chr3_4:41393338-41393357 | Msa0500830:CDS | 40.0% | |
| CTTCTATTCCATCAAGCCAA+TGG | + | chr3_4:41393514-41393533 | Msa0500830:CDS | 40.0% | |
| !! | GCTATATTCCATTGGCTTGA+TGG | - | chr3_4:41393525-41393544 | None:intergenic | 40.0% |
| ! | CCGTTTCTTGATAATCTCAC+TGG | + | chr3_4:41393544-41393563 | Msa0500830:CDS | 40.0% |
| ATGCGAAAATGGCAGCAAAA+TGG | + | chr3_4:41393600-41393619 | Msa0500830:CDS | 40.0% | |
| TGCGAAAATGGCAGCAAAAT+GGG | + | chr3_4:41393601-41393620 | Msa0500830:CDS | 40.0% | |
| TGAATTAAGTGCTCGAGTGA+CGG | - | chr3_4:41393720-41393739 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+GGG | + | chr3_4:41393842-41393861 | Msa0500830:intron | 40.0% | |
| GTTGAAGAAACCAGTCTCTA+AGG | + | chr3_4:41393934-41393953 | Msa0500830:CDS | 40.0% | |
| !!! | CCTCTCTTGGGAAAGTATTT+TGG | - | chr3_4:41394120-41394139 | None:intergenic | 40.0% |
| CCAAAATACTTTCCCAAGAG+AGG | + | chr3_4:41394117-41394136 | Msa0500830:CDS | 40.0% | |
| AAATACTTTCCCAAGAGAGG+AGG | + | chr3_4:41394120-41394139 | Msa0500830:CDS | 40.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | - | chr3_4:41392631-41392650 | None:intergenic | 45.0% | |
| !! | CATTGATGGTGGCGGTATAA+GGG | + | chr3_4:41392663-41392682 | Msa0500830:CDS | 45.0% |
| !! | ATTGATGGTGGCGGTATAAG+GGG | + | chr3_4:41392664-41392683 | Msa0500830:CDS | 45.0% |
| AAGGAACTCGAGGATAGTTG+CGG | - | chr3_4:41392698-41392717 | None:intergenic | 45.0% | |
| ATTACAGGAACAAGTACGGG+TGG | + | chr3_4:41392778-41392797 | Msa0500830:CDS | 45.0% | |
| ! | TGGACGCTTTTGTTCATTCG+GGG | - | chr3_4:41392827-41392846 | None:intergenic | 45.0% |
| ! | GTGGACGCTTTTGTTCATTC+GGG | - | chr3_4:41392828-41392847 | None:intergenic | 45.0% |
| ! | AACTCATGCAGGGACTTGTT+GGG | + | chr3_4:41393000-41393019 | Msa0500830:intron | 45.0% |
| TCTCCCTTACCACTTCATGA+AGG | - | chr3_4:41393080-41393099 | None:intergenic | 45.0% | |
| TGAAGTGGTAAGGGAGAAGT+TGG | + | chr3_4:41393083-41393102 | Msa0500830:CDS | 45.0% | |
| GAAGTGGTAAGGGAGAAGTT+GGG | + | chr3_4:41393084-41393103 | Msa0500830:CDS | 45.0% | |
| AAGTGGTAAGGGAGAAGTTG+GGG | + | chr3_4:41393085-41393104 | Msa0500830:CDS | 45.0% | |
| AAGATAAGTAGGTGCAGCAG+AGG | - | chr3_4:41393253-41393272 | None:intergenic | 45.0% | |
| GTGTGTTGCCTTCTGTATCT+TGG | - | chr3_4:41393296-41393315 | None:intergenic | 45.0% | |
| CACAAACACCGCCATCAATA+AGG | - | chr3_4:41393329-41393348 | None:intergenic | 45.0% | |
| ! | TTGATAATCTCACTGGGCAC+TGG | + | chr3_4:41393551-41393570 | Msa0500830:CDS | 45.0% |
| GCGAAAATGGCAGCAAAATG+GGG | + | chr3_4:41393602-41393621 | Msa0500830:CDS | 45.0% | |
| !! | CTGCTGGATTGGTTAACTCA+CGG | + | chr3_4:41393626-41393645 | Msa0500830:CDS | 45.0% |
| !!! | CCTTTTGAGAGCATCTTGGT+TGG | - | chr3_4:41394005-41394024 | None:intergenic | 45.0% |
| CCAACCAAGATGCTCTCAAA+AGG | + | chr3_4:41394002-41394021 | Msa0500830:CDS | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | - | chr3_4:41392631-41392650 | None:intergenic | 45.0% | |
| !! | CATTGATGGTGGCGGTATAA+GGG | + | chr3_4:41392663-41392682 | Msa0500830:CDS | 45.0% |
| !! | ATTGATGGTGGCGGTATAAG+GGG | + | chr3_4:41392664-41392683 | Msa0500830:CDS | 45.0% |
| AAGGAACTCGAGGATAGTTG+CGG | - | chr3_4:41392698-41392717 | None:intergenic | 45.0% | |
| ATTACAGGAACAAGTACGGG+TGG | + | chr3_4:41392778-41392797 | Msa0500830:CDS | 45.0% | |
| ! | TGGACGCTTTTGTTCATTCG+GGG | - | chr3_4:41392827-41392846 | None:intergenic | 45.0% |
| ! | GTGGACGCTTTTGTTCATTC+GGG | - | chr3_4:41392828-41392847 | None:intergenic | 45.0% |
| ! | AACTCATGCAGGGACTTGTT+GGG | + | chr3_4:41393000-41393019 | Msa0500830:intron | 45.0% |
| TCTCCCTTACCACTTCATGA+AGG | - | chr3_4:41393080-41393099 | None:intergenic | 45.0% | |
| TGAAGTGGTAAGGGAGAAGT+TGG | + | chr3_4:41393083-41393102 | Msa0500830:CDS | 45.0% | |
| GAAGTGGTAAGGGAGAAGTT+GGG | + | chr3_4:41393084-41393103 | Msa0500830:CDS | 45.0% | |
| AAGTGGTAAGGGAGAAGTTG+GGG | + | chr3_4:41393085-41393104 | Msa0500830:CDS | 45.0% | |
| AAGATAAGTAGGTGCAGCAG+AGG | - | chr3_4:41393253-41393272 | None:intergenic | 45.0% | |
| GTGTGTTGCCTTCTGTATCT+TGG | - | chr3_4:41393296-41393315 | None:intergenic | 45.0% | |
| CACAAACACCGCCATCAATA+AGG | - | chr3_4:41393329-41393348 | None:intergenic | 45.0% | |
| ! | TTGATAATCTCACTGGGCAC+TGG | + | chr3_4:41393551-41393570 | Msa0500830:CDS | 45.0% |
| GCGAAAATGGCAGCAAAATG+GGG | + | chr3_4:41393602-41393621 | Msa0500830:CDS | 45.0% | |
| !! | CTGCTGGATTGGTTAACTCA+CGG | + | chr3_4:41393626-41393645 | Msa0500830:CDS | 45.0% |
| !!! | CCTTTTGAGAGCATCTTGGT+TGG | - | chr3_4:41394005-41394024 | None:intergenic | 45.0% |
| CCAACCAAGATGCTCTCAAA+AGG | + | chr3_4:41394002-41394021 | Msa0500830:CDS | 45.0% | |
| !! | GCATTGATGGTGGCGGTATA+AGG | + | chr3_4:41392662-41392681 | Msa0500830:CDS | 50.0% |
| AGGAACTCGAGGATAGTTGC+GGG | - | chr3_4:41392697-41392716 | None:intergenic | 50.0% | |
| GTTGCGATTCAAGGAACTCG+AGG | - | chr3_4:41392708-41392727 | None:intergenic | 50.0% | |
| TGGTGAATCTGCTAGGCTTG+CGG | + | chr3_4:41392741-41392760 | Msa0500830:CDS | 50.0% | |
| !!! | GCGTCCACTTTTTGCTGCTA+AGG | + | chr3_4:41392840-41392859 | Msa0500830:CDS | 50.0% |
| GAACTCATGCAGGGACTTGT+TGG | + | chr3_4:41392999-41393018 | Msa0500830:intron | 50.0% | |
| !! | AGGGACTTGTTGGGATCAGT+GGG | + | chr3_4:41393009-41393028 | Msa0500830:intron | 50.0% |
| AGTGGTAAGGGAGAAGTTGG+GGG | + | chr3_4:41393086-41393105 | Msa0500830:CDS | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | + | chr3_4:41393212-41393231 | Msa0500830:CDS | 50.0% | |
| GCTGCACCTACTTATCTTCC+AGG | + | chr3_4:41393255-41393274 | Msa0500830:CDS | 50.0% | |
| CAAAATGGGGTCTGCTGGAT+TGG | + | chr3_4:41393615-41393634 | Msa0500830:CDS | 50.0% | |
| !! | CTGGATTGGTTAACTCACGG+TGG | + | chr3_4:41393629-41393648 | Msa0500830:CDS | 50.0% |
| TGTGAGGGGATTTCAACTCG+CGG | - | chr3_4:41394148-41394167 | None:intergenic | 50.0% | |
| !! | GCATTGATGGTGGCGGTATA+AGG | + | chr3_4:41392662-41392681 | Msa0500830:CDS | 50.0% |
| AGGAACTCGAGGATAGTTGC+GGG | - | chr3_4:41392697-41392716 | None:intergenic | 50.0% | |
| GTTGCGATTCAAGGAACTCG+AGG | - | chr3_4:41392708-41392727 | None:intergenic | 50.0% | |
| TGGTGAATCTGCTAGGCTTG+CGG | + | chr3_4:41392741-41392760 | Msa0500830:CDS | 50.0% | |
| !!! | GCGTCCACTTTTTGCTGCTA+AGG | + | chr3_4:41392840-41392859 | Msa0500830:CDS | 50.0% |
| GAACTCATGCAGGGACTTGT+TGG | + | chr3_4:41392999-41393018 | Msa0500830:intron | 50.0% | |
| !! | AGGGACTTGTTGGGATCAGT+GGG | + | chr3_4:41393009-41393028 | Msa0500830:intron | 50.0% |
| AGTGGTAAGGGAGAAGTTGG+GGG | + | chr3_4:41393086-41393105 | Msa0500830:CDS | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | + | chr3_4:41393212-41393231 | Msa0500830:CDS | 50.0% | |
| GCTGCACCTACTTATCTTCC+AGG | + | chr3_4:41393255-41393274 | Msa0500830:CDS | 50.0% | |
| CAAAATGGGGTCTGCTGGAT+TGG | + | chr3_4:41393615-41393634 | Msa0500830:CDS | 50.0% | |
| !! | CTGGATTGGTTAACTCACGG+TGG | + | chr3_4:41393629-41393648 | Msa0500830:CDS | 50.0% |
| TGTGAGGGGATTTCAACTCG+CGG | - | chr3_4:41394148-41394167 | None:intergenic | 50.0% | |
| CAGATTCAGCCTCCCACCTA+TGG | + | chr3_4:41392619-41392638 | Msa0500830:CDS | 55.0% | |
| !! | CAGGGACTTGTTGGGATCAG+TGG | + | chr3_4:41393008-41393027 | Msa0500830:intron | 55.0% |
| !! | GGGACTTGTTGGGATCAGTG+GGG | + | chr3_4:41393010-41393029 | Msa0500830:intron | 55.0% |
| GAGAGTCGAGCATCCATGCA+AGG | - | chr3_4:41393213-41393232 | None:intergenic | 55.0% | |
| CAGATTCAGCCTCCCACCTA+TGG | + | chr3_4:41392619-41392638 | Msa0500830:CDS | 55.0% | |
| !! | CAGGGACTTGTTGGGATCAG+TGG | + | chr3_4:41393008-41393027 | Msa0500830:intron | 55.0% |
| !! | GGGACTTGTTGGGATCAGTG+GGG | + | chr3_4:41393010-41393029 | Msa0500830:intron | 55.0% |
| GAGAGTCGAGCATCCATGCA+AGG | - | chr3_4:41393213-41393232 | None:intergenic | 55.0% | |
| GGCAGCAAAATGGGGTCTGC+TGG | + | chr3_4:41393610-41393629 | Msa0500830:CDS | 60.0% | |
| CTCGAGTGACGGCAGCAAGA+TGG | - | chr3_4:41393709-41393728 | None:intergenic | 60.0% | |
| GGCAGCAAAATGGGGTCTGC+TGG | + | chr3_4:41393610-41393629 | Msa0500830:CDS | 60.0% | |
| CTCGAGTGACGGCAGCAAGA+TGG | - | chr3_4:41393709-41393728 | None:intergenic | 60.0% | |
| CTCGCGGAGCCTCCTCTCTT+GGG | - | chr3_4:41394132-41394151 | None:intergenic | 65.0% | |
| ACTCGCGGAGCCTCCTCTCT+TGG | - | chr3_4:41394133-41394152 | None:intergenic | 65.0% | |
| CTCGCGGAGCCTCCTCTCTT+GGG | - | chr3_4:41394132-41394151 | None:intergenic | 65.0% | |
| ACTCGCGGAGCCTCCTCTCT+TGG | - | chr3_4:41394133-41394152 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41392592 | 41394230 | 41392592 | ID=Msa0500830;Name=Msa0500830 |
| chr3_4 | mRNA | 41392592 | 41394230 | 41392592 | ID=Msa0500830-mRNA-1;Parent=Msa0500830;Name=Msa0500830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.2|1|1|1|5|43|408 |
| chr3_4 | exon | 41392592 | 41392914 | 41392592 | ID=Msa0500830-mRNA-1:exon:8655;Parent=Msa0500830-mRNA-1 |
| chr3_4 | exon | 41393011 | 41393359 | 41393011 | ID=Msa0500830-mRNA-1:exon:8656;Parent=Msa0500830-mRNA-1 |
| chr3_4 | exon | 41393461 | 41393763 | 41393461 | ID=Msa0500830-mRNA-1:exon:8657;Parent=Msa0500830-mRNA-1 |
| chr3_4 | exon | 41393848 | 41394023 | 41393848 | ID=Msa0500830-mRNA-1:exon:8658;Parent=Msa0500830-mRNA-1 |
| chr3_4 | exon | 41394112 | 41394230 | 41394112 | ID=Msa0500830-mRNA-1:exon:8659;Parent=Msa0500830-mRNA-1 |
| chr3_4 | CDS | 41392592 | 41392914 | 41392592 | ID=Msa0500830-mRNA-1:cds;Parent=Msa0500830-mRNA-1 |
| chr3_4 | CDS | 41393011 | 41393359 | 41393011 | ID=Msa0500830-mRNA-1:cds;Parent=Msa0500830-mRNA-1 |
| chr3_4 | CDS | 41393461 | 41393763 | 41393461 | ID=Msa0500830-mRNA-1:cds;Parent=Msa0500830-mRNA-1 |
| chr3_4 | CDS | 41393848 | 41394023 | 41393848 | ID=Msa0500830-mRNA-1:cds;Parent=Msa0500830-mRNA-1 |
| chr3_4 | CDS | 41394112 | 41394187 | 41394112 | ID=Msa0500830-mRNA-1:cds;Parent=Msa0500830-mRNA-1 |
| chr3_4 | three_prime_UTR | 41394188 | 41394230 | 41394188 | ID=Msa0500830-mRNA-1:three_prime_utr;Parent=Msa0500830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
