Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501120 | XP_003603464.1 | 59.893 | 187 | 14 | 4 | 1 | 127 | 1 | 186 | 7.60e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501120 | G7JBP9 | 59.893 | 187 | 14 | 4 | 1 | 127 | 1 | 186 | 3.63e-37 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0501120 | Msa0501140 | 0.801143 | 1.034779e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501120 | MtrunA17_Chr3g0138401 | 59.893 | 187 | 14 | 4 | 1 | 127 | 1 | 186 | 6.99e-41 | 140 |
| Msa0501120 | MtrunA17_Chr4g0005121 | 90.278 | 72 | 4 | 1 | 1 | 72 | 1 | 69 | 2.26e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGATTGATGCGAATAAA+TGG | 0.197424 | 3_4:+41793177 | Msa0501120:CDS |
| TGTAATCAATTCAATTCAAT+TGG | 0.308257 | 3_4:-41791646 | None:intergenic |
| GTTTATGGAACTTAAAATTC+CGG | 0.317860 | 3_4:-41793375 | None:intergenic |
| TCCACCTCCGAAACCGCTTC+TGG | 0.360041 | 3_4:+41792126 | Msa0501120:CDS |
| TCTCTCCTCCAGACGCATTT+CGG | 0.381595 | 3_4:-41793061 | None:intergenic |
| TTCCACCGACGTTAGGTTAC+CGG | 0.385652 | 3_4:+41792056 | Msa0501120:CDS |
| TTTATGGAACTTAAAATTCC+GGG | 0.389295 | 3_4:-41793374 | None:intergenic |
| GTACTTACCAGAAGCGGTTT+CGG | 0.392410 | 3_4:-41792133 | None:intergenic |
| GGAGAAAGGGCCACGAGCAC+CGG | 0.406027 | 3_4:-41792103 | None:intergenic |
| CGCATCAATCTTAGTGTTGG+TGG | 0.409917 | 3_4:-41793168 | None:intergenic |
| GTAATCAATTCAATTCAATT+GGG | 0.412543 | 3_4:-41791645 | None:intergenic |
| GCCACGAGCACCGGCGGAGG+AGG | 0.420220 | 3_4:-41792094 | None:intergenic |
| AGCTATGCAGCAGAGTGAAA+TGG | 0.429562 | 3_4:+41791907 | Msa0501120:five_prime_UTR |
| GTTTCGGAGGTGGAGGAGAA+AGG | 0.435045 | 3_4:-41792117 | None:intergenic |
| CAGGTCCTCCGAAATGCGTC+TGG | 0.445569 | 3_4:+41793053 | Msa0501120:intron |
| ACCAGAAGCGGTTTCGGAGG+TGG | 0.466600 | 3_4:-41792127 | None:intergenic |
| TAAGATTGATGCGAATAAAT+GGG | 0.473687 | 3_4:+41793178 | Msa0501120:CDS |
| AGGGCCACGAGCACCGGCGG+AGG | 0.478100 | 3_4:-41792097 | None:intergenic |
| CTGATACTTCCACCGACGTT+AGG | 0.478726 | 3_4:+41792049 | Msa0501120:CDS |
| CATCAATTTGGTAGAAAAGC+AGG | 0.480591 | 3_4:+41792737 | Msa0501120:intron |
| GCTATGCAGCAGAGTGAAAT+GGG | 0.481963 | 3_4:+41791908 | Msa0501120:five_prime_UTR |
| GCCTCCTCCGCCGGTGCTCG+TGG | 0.487582 | 3_4:+41792093 | Msa0501120:CDS |
| ATCAATGGCGGTGCTGAGAA+TGG | 0.489429 | 3_4:+41791933 | Msa0501120:exon |
| TCAGCATCAGCCTCCTCCGC+CGG | 0.490900 | 3_4:+41792084 | Msa0501120:CDS |
| GCTGATGAAGGATCTAGAAC+TGG | 0.491143 | 3_4:+41793341 | Msa0501120:CDS |
| GAAAATCATGGAGGAAGTGT+TGG | 0.496873 | 3_4:-41792011 | None:intergenic |
| TTTCGGAGGTGGAGGAGAAA+GGG | 0.497327 | 3_4:-41792116 | None:intergenic |
| TAAGAGGAAAAGCTGACAAA+AGG | 0.506949 | 3_4:+41791620 | None:intergenic |
| AATGATGACGAAGTGTTACT+TGG | 0.508592 | 3_4:+41793098 | Msa0501120:CDS |
| GAAAGGGCCACGAGCACCGG+CGG | 0.511791 | 3_4:-41792100 | None:intergenic |
| AAAATCATGGAGGAAGTGTT+GGG | 0.513221 | 3_4:-41792010 | None:intergenic |
| GGATCTAGAACTGGAATCAA+AGG | 0.514477 | 3_4:+41793350 | Msa0501120:CDS |
| GAGGCTGATGCTGATGCCTC+CGG | 0.517085 | 3_4:-41792075 | None:intergenic |
| TCTCAGCCTGCCGCTGATGA+AGG | 0.519106 | 3_4:+41793329 | Msa0501120:intron |
| ATTCGCATCAATCTTAGTGT+TGG | 0.520039 | 3_4:-41793171 | None:intergenic |
| CTAGATCCTTCATCAGCGGC+AGG | 0.525101 | 3_4:-41793335 | None:intergenic |
| AGTAACACTTCGTCATCATT+AGG | 0.535648 | 3_4:-41793095 | None:intergenic |
| AATATCTGAGAACTAGAAGA+TGG | 0.544323 | 3_4:-41793137 | None:intergenic |
| GCTTCATGCCGAGAAAATCA+TGG | 0.554318 | 3_4:-41792023 | None:intergenic |
| GCATCAATCTTAGTGTTGGT+GGG | 0.554769 | 3_4:-41793167 | None:intergenic |
| AGAACTGGAATCAAAGGCCC+CGG | 0.567203 | 3_4:+41793356 | Msa0501120:CDS |
| AGAAGCGGTTTCGGAGGTGG+AGG | 0.568065 | 3_4:-41792124 | None:intergenic |
| TAATCAATTCAATTCAATTG+GGG | 0.572167 | 3_4:-41791644 | None:intergenic |
| AGAGTGAAATGGGTAATCAA+TGG | 0.572299 | 3_4:+41791918 | Msa0501120:exon |
| TTAGTAGTACTTACCAGAAG+CGG | 0.600815 | 3_4:-41792139 | None:intergenic |
| CTCCTCCAGACGCATTTCGG+AGG | 0.605747 | 3_4:-41793058 | None:intergenic |
| AACGTCGGTGGAAGTATCAG+TGG | 0.609086 | 3_4:-41792046 | None:intergenic |
| GTCCTCCGAAATGCGTCTGG+AGG | 0.623376 | 3_4:+41793056 | Msa0501120:CDS |
| CTTACCAGAAGCGGTTTCGG+AGG | 0.640461 | 3_4:-41792130 | None:intergenic |
| TTGATGCGAATAAATGGGAA+CGG | 0.646108 | 3_4:+41793183 | Msa0501120:CDS |
| CACCGACGTTAGGTTACCGG+AGG | 0.647418 | 3_4:+41792059 | Msa0501120:CDS |
| CTGGAGGAGAGAGATCGAGA+AGG | 0.648772 | 3_4:+41793072 | Msa0501120:CDS |
| AGTTCTAGATCCTTCATCAG+CGG | 0.651396 | 3_4:-41793339 | None:intergenic |
| TCAATCTTAGTGTTGGTGGG+TGG | 0.654121 | 3_4:-41793164 | None:intergenic |
| CTCCGGTAACCTAACGTCGG+TGG | 0.654776 | 3_4:-41792058 | None:intergenic |
| ACGTCGGTGGAAGTATCAGT+GGG | 0.655076 | 3_4:-41792045 | None:intergenic |
| TTATGGAACTTAAAATTCCG+GGG | 0.662736 | 3_4:-41793373 | None:intergenic |
| GTTGTTAGAAAATGTAGTTG+TGG | 0.667971 | 3_4:-41791784 | None:intergenic |
| GTGAAATGGGTAATCAATGG+CGG | 0.690764 | 3_4:+41791921 | Msa0501120:exon |
| TGCCTCCGGTAACCTAACGT+CGG | 0.705158 | 3_4:-41792061 | None:intergenic |
| TCATGCCGAGAAAATCATGG+AGG | 0.774525 | 3_4:-41792020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGATATGAATTTTTA+GGG | + | chr3_4:41792569-41792588 | Msa0501120:intron | 10.0% |
| !!! | TATAATGATATGAATTTTTA+GGG | + | chr3_4:41792569-41792588 | Msa0501120:intron | 10.0% |
| !! | TGAATAAAAAAATGAAACAT+GGG | - | chr3_4:41792197-41792216 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTTCAATAATTAT+AGG | + | chr3_4:41792317-41792336 | Msa0501120:intron | 15.0% |
| !!! | GTATAATGATATGAATTTTT+AGG | + | chr3_4:41792568-41792587 | Msa0501120:intron | 15.0% |
| !!! | GTTTTTATGTTTTCTTTAAA+TGG | + | chr3_4:41792695-41792714 | Msa0501120:intron | 15.0% |
| !! | AGAAAATAATATAAAAGCAA+AGG | - | chr3_4:41793007-41793026 | None:intergenic | 15.0% |
| !! | TGAATAAAAAAATGAAACAT+GGG | - | chr3_4:41792197-41792216 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTTCAATAATTAT+AGG | + | chr3_4:41792317-41792336 | Msa0501120:intron | 15.0% |
| !!! | GTATAATGATATGAATTTTT+AGG | + | chr3_4:41792568-41792587 | Msa0501120:intron | 15.0% |
| !!! | GTTTTTATGTTTTCTTTAAA+TGG | + | chr3_4:41792695-41792714 | Msa0501120:intron | 15.0% |
| !! | AGAAAATAATATAAAAGCAA+AGG | - | chr3_4:41793007-41793026 | None:intergenic | 15.0% |
| !! | TAATCAATTCAATTCAATTG+GGG | - | chr3_4:41791647-41791666 | None:intergenic | 20.0% |
| !! | GTAATCAATTCAATTCAATT+GGG | - | chr3_4:41791648-41791667 | None:intergenic | 20.0% |
| !! | TGTAATCAATTCAATTCAAT+TGG | - | chr3_4:41791649-41791668 | None:intergenic | 20.0% |
| !!! | CAACTAAAGTTTTGATTTTT+AGG | + | chr3_4:41792163-41792182 | Msa0501120:intron | 20.0% |
| !! | GAATAAAAAAATGAAACATG+GGG | - | chr3_4:41792196-41792215 | None:intergenic | 20.0% |
| !! | CTGAATAAAAAAATGAAACA+TGG | - | chr3_4:41792198-41792217 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTGTTCAAAACAA+TGG | - | chr3_4:41792515-41792534 | None:intergenic | 20.0% |
| !!! | TTTTTGGCTATTGAATATAT+TGG | - | chr3_4:41792974-41792993 | None:intergenic | 20.0% |
| !! | TATATTCAATAGCCAAAAAA+AGG | + | chr3_4:41792975-41792994 | Msa0501120:intron | 20.0% |
| !! | TAATCAATTCAATTCAATTG+GGG | - | chr3_4:41791647-41791666 | None:intergenic | 20.0% |
| !! | GTAATCAATTCAATTCAATT+GGG | - | chr3_4:41791648-41791667 | None:intergenic | 20.0% |
| !! | TGTAATCAATTCAATTCAAT+TGG | - | chr3_4:41791649-41791668 | None:intergenic | 20.0% |
| !!! | CAACTAAAGTTTTGATTTTT+AGG | + | chr3_4:41792163-41792182 | Msa0501120:intron | 20.0% |
| !! | GAATAAAAAAATGAAACATG+GGG | - | chr3_4:41792196-41792215 | None:intergenic | 20.0% |
| !! | CTGAATAAAAAAATGAAACA+TGG | - | chr3_4:41792198-41792217 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTGTTCAAAACAA+TGG | - | chr3_4:41792515-41792534 | None:intergenic | 20.0% |
| !!! | TTTTTGGCTATTGAATATAT+TGG | - | chr3_4:41792974-41792993 | None:intergenic | 20.0% |
| !! | TATATTCAATAGCCAAAAAA+AGG | + | chr3_4:41792975-41792994 | Msa0501120:intron | 20.0% |
| !!! | TTTCCATTTTTTTCTCTTAG+TGG | + | chr3_4:41792246-41792265 | Msa0501120:intron | 25.0% |
| !!! | TTCCATTTTTTTCTCTTAGT+GGG | + | chr3_4:41792247-41792266 | Msa0501120:intron | 25.0% |
| !! | AATTTATGGTCATGATTTTC+TGG | + | chr3_4:41792389-41792408 | Msa0501120:intron | 25.0% |
| !! | CTGACTCTAAATTATTTTCA+TGG | - | chr3_4:41792461-41792480 | None:intergenic | 25.0% |
| ! | TCTTAGTTTCTTACTTATTC+TGG | + | chr3_4:41792634-41792653 | Msa0501120:intron | 25.0% |
| ! | TAATTCTGATTCCTCATTTA+TGG | + | chr3_4:41792854-41792873 | Msa0501120:intron | 25.0% |
| ! | AATTCTGATTCCTCATTTAT+GGG | + | chr3_4:41792855-41792874 | Msa0501120:intron | 25.0% |
| ! | TAAGATTGATGCGAATAAAT+GGG | + | chr3_4:41793178-41793197 | Msa0501120:CDS | 25.0% |
| !!! | TTTCCATTTTTTTCTCTTAG+TGG | + | chr3_4:41792246-41792265 | Msa0501120:intron | 25.0% |
| !!! | TTCCATTTTTTTCTCTTAGT+GGG | + | chr3_4:41792247-41792266 | Msa0501120:intron | 25.0% |
| !! | AATTTATGGTCATGATTTTC+TGG | + | chr3_4:41792389-41792408 | Msa0501120:intron | 25.0% |
| !! | CTGACTCTAAATTATTTTCA+TGG | - | chr3_4:41792461-41792480 | None:intergenic | 25.0% |
| ! | TCTTAGTTTCTTACTTATTC+TGG | + | chr3_4:41792634-41792653 | Msa0501120:intron | 25.0% |
| ! | TAATTCTGATTCCTCATTTA+TGG | + | chr3_4:41792854-41792873 | Msa0501120:intron | 25.0% |
| ! | AATTCTGATTCCTCATTTAT+GGG | + | chr3_4:41792855-41792874 | Msa0501120:intron | 25.0% |
| ! | TAAGATTGATGCGAATAAAT+GGG | + | chr3_4:41793178-41793197 | Msa0501120:CDS | 25.0% |
| !! | CTGTTGTTGGTTGATTTTAA+TGG | - | chr3_4:41791758-41791777 | None:intergenic | 30.0% |
| GTTGTTAGAAAATGTAGTTG+TGG | - | chr3_4:41791787-41791806 | None:intergenic | 30.0% | |
| TTTCAGAGTGAAAAAGCAAA+AGG | - | chr3_4:41791822-41791841 | None:intergenic | 30.0% | |
| ! | TGGAAAGTATAGAACTTTAG+TGG | - | chr3_4:41792232-41792251 | None:intergenic | 30.0% |
| !!! | TCCATTTTTTTCTCTTAGTG+GGG | + | chr3_4:41792248-41792267 | Msa0501120:intron | 30.0% |
| AACCAAAGACACAAAATTGA+GGG | - | chr3_4:41792286-41792305 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTGCTTTGTAGCA+TGG | + | chr3_4:41792413-41792432 | Msa0501120:intron | 30.0% |
| !!! | CATAATTTTTGCTGTTGTGT+TGG | + | chr3_4:41792597-41792616 | Msa0501120:intron | 30.0% |
| ! | TTTTCTACCAAATTGATGAG+GGG | - | chr3_4:41792735-41792754 | None:intergenic | 30.0% |
| ! | CTTTTCTACCAAATTGATGA+GGG | - | chr3_4:41792736-41792755 | None:intergenic | 30.0% |
| TTGGCTATTGAATATATTGG+AGG | - | chr3_4:41792971-41792990 | None:intergenic | 30.0% | |
| !!! | CAAAGGCATTTTCCTTTTTT+TGG | - | chr3_4:41792990-41793009 | None:intergenic | 30.0% |
| AATATCTGAGAACTAGAAGA+TGG | - | chr3_4:41793140-41793159 | None:intergenic | 30.0% | |
| CTAAGATTGATGCGAATAAA+TGG | + | chr3_4:41793177-41793196 | Msa0501120:CDS | 30.0% | |
| !! | CTGTTGTTGGTTGATTTTAA+TGG | - | chr3_4:41791758-41791777 | None:intergenic | 30.0% |
| GTTGTTAGAAAATGTAGTTG+TGG | - | chr3_4:41791787-41791806 | None:intergenic | 30.0% | |
| TTTCAGAGTGAAAAAGCAAA+AGG | - | chr3_4:41791822-41791841 | None:intergenic | 30.0% | |
| ! | TGGAAAGTATAGAACTTTAG+TGG | - | chr3_4:41792232-41792251 | None:intergenic | 30.0% |
| !!! | TCCATTTTTTTCTCTTAGTG+GGG | + | chr3_4:41792248-41792267 | Msa0501120:intron | 30.0% |
| AACCAAAGACACAAAATTGA+GGG | - | chr3_4:41792286-41792305 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTGCTTTGTAGCA+TGG | + | chr3_4:41792413-41792432 | Msa0501120:intron | 30.0% |
| !!! | CATAATTTTTGCTGTTGTGT+TGG | + | chr3_4:41792597-41792616 | Msa0501120:intron | 30.0% |
| ! | TTTTCTACCAAATTGATGAG+GGG | - | chr3_4:41792735-41792754 | None:intergenic | 30.0% |
| ! | CTTTTCTACCAAATTGATGA+GGG | - | chr3_4:41792736-41792755 | None:intergenic | 30.0% |
| TTGGCTATTGAATATATTGG+AGG | - | chr3_4:41792971-41792990 | None:intergenic | 30.0% | |
| !!! | CAAAGGCATTTTCCTTTTTT+TGG | - | chr3_4:41792990-41793009 | None:intergenic | 30.0% |
| AATATCTGAGAACTAGAAGA+TGG | - | chr3_4:41793140-41793159 | None:intergenic | 30.0% | |
| CTAAGATTGATGCGAATAAA+TGG | + | chr3_4:41793177-41793196 | Msa0501120:CDS | 30.0% | |
| AGAGTGAAATGGGTAATCAA+TGG | + | chr3_4:41791918-41791937 | Msa0501120:exon | 35.0% | |
| AACAACAACAACAACATCAG+TGG | + | chr3_4:41791985-41792004 | Msa0501120:CDS | 35.0% | |
| ACAACAACAACAACATCAGT+GGG | + | chr3_4:41791986-41792005 | Msa0501120:CDS | 35.0% | |
| !! | AAAATCATGGAGGAAGTGTT+GGG | - | chr3_4:41792013-41792032 | None:intergenic | 35.0% |
| TTAGTAGTACTTACCAGAAG+CGG | - | chr3_4:41792142-41792161 | None:intergenic | 35.0% | |
| ACCCCACTAAGAGAAAAAAA+TGG | - | chr3_4:41792252-41792271 | None:intergenic | 35.0% | |
| ! | TTCCCTCAATTTTGTGTCTT+TGG | + | chr3_4:41792281-41792300 | Msa0501120:intron | 35.0% |
| CAACCAAAGACACAAAATTG+AGG | - | chr3_4:41792287-41792306 | None:intergenic | 35.0% | |
| ! | CTCAATTTTGTGTCTTTGGT+TGG | + | chr3_4:41792285-41792304 | Msa0501120:intron | 35.0% |
| TTTGTGTCTTTGGTTGGATT+TGG | + | chr3_4:41792291-41792310 | Msa0501120:intron | 35.0% | |
| ! | GTAGTGTGTTTGAAGTTAGT+TGG | + | chr3_4:41792339-41792358 | Msa0501120:intron | 35.0% |
| GACCATAAATTTGCATACCA+AGG | - | chr3_4:41792380-41792399 | None:intergenic | 35.0% | |
| TCATGTGAATGTTTGTGCAT+TGG | + | chr3_4:41792542-41792561 | Msa0501120:intron | 35.0% | |
| CATGTGAATGTTTGTGCATT+GGG | + | chr3_4:41792543-41792562 | Msa0501120:intron | 35.0% | |
| ! | TGTTTTACCCCTCATCAATT+TGG | + | chr3_4:41792725-41792744 | Msa0501120:intron | 35.0% |
| ! | GCTTTTCTACCAAATTGATG+AGG | - | chr3_4:41792737-41792756 | None:intergenic | 35.0% |
| CATCAATTTGGTAGAAAAGC+AGG | + | chr3_4:41792737-41792756 | Msa0501120:intron | 35.0% | |
| TGCCAGAAAAATCACTTCTT+GGG | - | chr3_4:41792797-41792816 | None:intergenic | 35.0% | |
| TGAGATAAGTAACAGACTAG+TGG | + | chr3_4:41792818-41792837 | Msa0501120:intron | 35.0% | |
| GAGATAAGTAACAGACTAGT+GGG | + | chr3_4:41792819-41792838 | Msa0501120:intron | 35.0% | |
| AGATAAGTAACAGACTAGTG+GGG | + | chr3_4:41792820-41792839 | Msa0501120:intron | 35.0% | |
| !!! | CATCAAATGCGAGTTTTGAA+AGG | - | chr3_4:41792916-41792935 | None:intergenic | 35.0% |
| TCAAAACTCGCATTTGATGA+AGG | + | chr3_4:41792917-41792936 | Msa0501120:intron | 35.0% | |
| !!! | CTTAAGTCCTGTTTTTGTAC+AGG | + | chr3_4:41793034-41793053 | Msa0501120:intron | 35.0% |
| AGTAACACTTCGTCATCATT+AGG | - | chr3_4:41793098-41793117 | None:intergenic | 35.0% | |
| ! | AATGATGACGAAGTGTTACT+TGG | + | chr3_4:41793098-41793117 | Msa0501120:CDS | 35.0% |
| ATTCGCATCAATCTTAGTGT+TGG | - | chr3_4:41793174-41793193 | None:intergenic | 35.0% | |
| TTGATGCGAATAAATGGGAA+CGG | + | chr3_4:41793183-41793202 | Msa0501120:CDS | 35.0% | |
| ! | TAAGCTTGTTTGAAGCTAGT+TGG | - | chr3_4:41793280-41793299 | None:intergenic | 35.0% |
| ! | AACTAGCTTCAAACAAGCTT+AGG | + | chr3_4:41793279-41793298 | Msa0501120:intron | 35.0% |
| ! | ACTAGCTTCAAACAAGCTTA+GGG | + | chr3_4:41793280-41793299 | Msa0501120:intron | 35.0% |
| AGAGTGAAATGGGTAATCAA+TGG | + | chr3_4:41791918-41791937 | Msa0501120:exon | 35.0% | |
| AACAACAACAACAACATCAG+TGG | + | chr3_4:41791985-41792004 | Msa0501120:CDS | 35.0% | |
| ACAACAACAACAACATCAGT+GGG | + | chr3_4:41791986-41792005 | Msa0501120:CDS | 35.0% | |
| !! | AAAATCATGGAGGAAGTGTT+GGG | - | chr3_4:41792013-41792032 | None:intergenic | 35.0% |
| TTAGTAGTACTTACCAGAAG+CGG | - | chr3_4:41792142-41792161 | None:intergenic | 35.0% | |
| ACCCCACTAAGAGAAAAAAA+TGG | - | chr3_4:41792252-41792271 | None:intergenic | 35.0% | |
| ! | TTCCCTCAATTTTGTGTCTT+TGG | + | chr3_4:41792281-41792300 | Msa0501120:intron | 35.0% |
| CAACCAAAGACACAAAATTG+AGG | - | chr3_4:41792287-41792306 | None:intergenic | 35.0% | |
| ! | CTCAATTTTGTGTCTTTGGT+TGG | + | chr3_4:41792285-41792304 | Msa0501120:intron | 35.0% |
| TTTGTGTCTTTGGTTGGATT+TGG | + | chr3_4:41792291-41792310 | Msa0501120:intron | 35.0% | |
| ! | GTAGTGTGTTTGAAGTTAGT+TGG | + | chr3_4:41792339-41792358 | Msa0501120:intron | 35.0% |
| GACCATAAATTTGCATACCA+AGG | - | chr3_4:41792380-41792399 | None:intergenic | 35.0% | |
| TCATGTGAATGTTTGTGCAT+TGG | + | chr3_4:41792542-41792561 | Msa0501120:intron | 35.0% | |
| CATGTGAATGTTTGTGCATT+GGG | + | chr3_4:41792543-41792562 | Msa0501120:intron | 35.0% | |
| ! | TGTTTTACCCCTCATCAATT+TGG | + | chr3_4:41792725-41792744 | Msa0501120:intron | 35.0% |
| ! | GCTTTTCTACCAAATTGATG+AGG | - | chr3_4:41792737-41792756 | None:intergenic | 35.0% |
| CATCAATTTGGTAGAAAAGC+AGG | + | chr3_4:41792737-41792756 | Msa0501120:intron | 35.0% | |
| TGCCAGAAAAATCACTTCTT+GGG | - | chr3_4:41792797-41792816 | None:intergenic | 35.0% | |
| TGAGATAAGTAACAGACTAG+TGG | + | chr3_4:41792818-41792837 | Msa0501120:intron | 35.0% | |
| GAGATAAGTAACAGACTAGT+GGG | + | chr3_4:41792819-41792838 | Msa0501120:intron | 35.0% | |
| AGATAAGTAACAGACTAGTG+GGG | + | chr3_4:41792820-41792839 | Msa0501120:intron | 35.0% | |
| !!! | CATCAAATGCGAGTTTTGAA+AGG | - | chr3_4:41792916-41792935 | None:intergenic | 35.0% |
| TCAAAACTCGCATTTGATGA+AGG | + | chr3_4:41792917-41792936 | Msa0501120:intron | 35.0% | |
| !!! | CTTAAGTCCTGTTTTTGTAC+AGG | + | chr3_4:41793034-41793053 | Msa0501120:intron | 35.0% |
| AGTAACACTTCGTCATCATT+AGG | - | chr3_4:41793098-41793117 | None:intergenic | 35.0% | |
| ! | AATGATGACGAAGTGTTACT+TGG | + | chr3_4:41793098-41793117 | Msa0501120:CDS | 35.0% |
| ATTCGCATCAATCTTAGTGT+TGG | - | chr3_4:41793174-41793193 | None:intergenic | 35.0% | |
| TTGATGCGAATAAATGGGAA+CGG | + | chr3_4:41793183-41793202 | Msa0501120:CDS | 35.0% | |
| ! | TAAGCTTGTTTGAAGCTAGT+TGG | - | chr3_4:41793280-41793299 | None:intergenic | 35.0% |
| ! | AACTAGCTTCAAACAAGCTT+AGG | + | chr3_4:41793279-41793298 | Msa0501120:intron | 35.0% |
| ! | ACTAGCTTCAAACAAGCTTA+GGG | + | chr3_4:41793280-41793299 | Msa0501120:intron | 35.0% |
| ! | GTTGTGGAGTTTTCTGTTGT+TGG | - | chr3_4:41791771-41791790 | None:intergenic | 40.0% |
| GTGAAATGGGTAATCAATGG+CGG | + | chr3_4:41791921-41791940 | Msa0501120:exon | 40.0% | |
| ! | GAAAATCATGGAGGAAGTGT+TGG | - | chr3_4:41792014-41792033 | None:intergenic | 40.0% |
| ! | CACTTCCTCCATGATTTTCT+CGG | + | chr3_4:41792015-41792034 | Msa0501120:CDS | 40.0% |
| CGCCTTGGTATGCAAATTTA+TGG | + | chr3_4:41792375-41792394 | Msa0501120:intron | 40.0% | |
| GTGCCAGAAAAATCACTTCT+TGG | - | chr3_4:41792798-41792817 | None:intergenic | 40.0% | |
| !!! | GCGAGTTTTGAAAGGAATCA+GGG | - | chr3_4:41792908-41792927 | None:intergenic | 40.0% |
| !!! | TGCGAGTTTTGAAAGGAATC+AGG | - | chr3_4:41792909-41792928 | None:intergenic | 40.0% |
| !! | GCATCAATCTTAGTGTTGGT+GGG | - | chr3_4:41793170-41793189 | None:intergenic | 40.0% |
| AAGCTTAGGGATACCATTTC+AGG | + | chr3_4:41793293-41793312 | Msa0501120:intron | 40.0% | |
| GATAAATGAAGGGCCTGAAA+TGG | - | chr3_4:41793309-41793328 | None:intergenic | 40.0% | |
| CAGGCTGAGAGATAAATGAA+GGG | - | chr3_4:41793319-41793338 | None:intergenic | 40.0% | |
| !! | AGTTCTAGATCCTTCATCAG+CGG | - | chr3_4:41793342-41793361 | None:intergenic | 40.0% |
| ! | GGATCTAGAACTGGAATCAA+AGG | + | chr3_4:41793350-41793369 | Msa0501120:CDS | 40.0% |
| ! | GTTGTGGAGTTTTCTGTTGT+TGG | - | chr3_4:41791771-41791790 | None:intergenic | 40.0% |
| GTGAAATGGGTAATCAATGG+CGG | + | chr3_4:41791921-41791940 | Msa0501120:exon | 40.0% | |
| ! | GAAAATCATGGAGGAAGTGT+TGG | - | chr3_4:41792014-41792033 | None:intergenic | 40.0% |
| ! | CACTTCCTCCATGATTTTCT+CGG | + | chr3_4:41792015-41792034 | Msa0501120:CDS | 40.0% |
| CGCCTTGGTATGCAAATTTA+TGG | + | chr3_4:41792375-41792394 | Msa0501120:intron | 40.0% | |
| GTGCCAGAAAAATCACTTCT+TGG | - | chr3_4:41792798-41792817 | None:intergenic | 40.0% | |
| !!! | GCGAGTTTTGAAAGGAATCA+GGG | - | chr3_4:41792908-41792927 | None:intergenic | 40.0% |
| !!! | TGCGAGTTTTGAAAGGAATC+AGG | - | chr3_4:41792909-41792928 | None:intergenic | 40.0% |
| !! | GCATCAATCTTAGTGTTGGT+GGG | - | chr3_4:41793170-41793189 | None:intergenic | 40.0% |
| AAGCTTAGGGATACCATTTC+AGG | + | chr3_4:41793293-41793312 | Msa0501120:intron | 40.0% | |
| GATAAATGAAGGGCCTGAAA+TGG | - | chr3_4:41793309-41793328 | None:intergenic | 40.0% | |
| CAGGCTGAGAGATAAATGAA+GGG | - | chr3_4:41793319-41793338 | None:intergenic | 40.0% | |
| !! | AGTTCTAGATCCTTCATCAG+CGG | - | chr3_4:41793342-41793361 | None:intergenic | 40.0% |
| ! | GGATCTAGAACTGGAATCAA+AGG | + | chr3_4:41793350-41793369 | Msa0501120:CDS | 40.0% |
| AGCTATGCAGCAGAGTGAAA+TGG | + | chr3_4:41791907-41791926 | Msa0501120:five_prime_UTR | 45.0% | |
| GCTATGCAGCAGAGTGAAAT+GGG | + | chr3_4:41791908-41791927 | Msa0501120:five_prime_UTR | 45.0% | |
| TCATGCCGAGAAAATCATGG+AGG | - | chr3_4:41792023-41792042 | None:intergenic | 45.0% | |
| GCTTCATGCCGAGAAAATCA+TGG | - | chr3_4:41792026-41792045 | None:intergenic | 45.0% | |
| GTACTTACCAGAAGCGGTTT+CGG | - | chr3_4:41792136-41792155 | None:intergenic | 45.0% | |
| !! | GGAGTTGATTGTTTTCGCCT+TGG | + | chr3_4:41792360-41792379 | Msa0501120:intron | 45.0% |
| !! | CAGGTATCGAATCATCTCGA+GGG | + | chr3_4:41792756-41792775 | Msa0501120:intron | 45.0% |
| TCACTTCTTGGGCCATAGAA+CGG | - | chr3_4:41792786-41792805 | None:intergenic | 45.0% | |
| ! | GGCCCAAGAAGTGATTTTTC+TGG | + | chr3_4:41792792-41792811 | Msa0501120:intron | 45.0% |
| TCTGGAGGAACCCATAAATG+AGG | - | chr3_4:41792868-41792887 | None:intergenic | 45.0% | |
| !! | CATTTGAAAGGCATCTCTGG+AGG | - | chr3_4:41792883-41792902 | None:intergenic | 45.0% |
| CTCCAGAGATGCCTTTCAAA+TGG | + | chr3_4:41792881-41792900 | Msa0501120:intron | 45.0% | |
| !! | GACCATTTGAAAGGCATCTC+TGG | - | chr3_4:41792886-41792905 | None:intergenic | 45.0% |
| GGAATCAGGGACCATTTGAA+AGG | - | chr3_4:41792895-41792914 | None:intergenic | 45.0% | |
| !! | TCAATCTTAGTGTTGGTGGG+TGG | - | chr3_4:41793167-41793186 | None:intergenic | 45.0% |
| ! | CGCATCAATCTTAGTGTTGG+TGG | - | chr3_4:41793171-41793190 | None:intergenic | 45.0% |
| CGGTCTATTCTCATGAATGC+TGG | + | chr3_4:41793203-41793222 | Msa0501120:intron | 45.0% | |
| ! | GAAGCTAGTTGGTGTGCAAA+AGG | - | chr3_4:41793269-41793288 | None:intergenic | 45.0% |
| GCAGGCTGAGAGATAAATGA+AGG | - | chr3_4:41793320-41793339 | None:intergenic | 45.0% | |
| ! | GCTGATGAAGGATCTAGAAC+TGG | + | chr3_4:41793341-41793360 | Msa0501120:CDS | 45.0% |
| ! | TCAAAGGCCCCGGAATTTTA+AGG | + | chr3_4:41793366-41793385 | Msa0501120:CDS | 45.0% |
| AGCTATGCAGCAGAGTGAAA+TGG | + | chr3_4:41791907-41791926 | Msa0501120:five_prime_UTR | 45.0% | |
| GCTATGCAGCAGAGTGAAAT+GGG | + | chr3_4:41791908-41791927 | Msa0501120:five_prime_UTR | 45.0% | |
| TCATGCCGAGAAAATCATGG+AGG | - | chr3_4:41792023-41792042 | None:intergenic | 45.0% | |
| GCTTCATGCCGAGAAAATCA+TGG | - | chr3_4:41792026-41792045 | None:intergenic | 45.0% | |
| GTACTTACCAGAAGCGGTTT+CGG | - | chr3_4:41792136-41792155 | None:intergenic | 45.0% | |
| !! | GGAGTTGATTGTTTTCGCCT+TGG | + | chr3_4:41792360-41792379 | Msa0501120:intron | 45.0% |
| !! | CAGGTATCGAATCATCTCGA+GGG | + | chr3_4:41792756-41792775 | Msa0501120:intron | 45.0% |
| TCACTTCTTGGGCCATAGAA+CGG | - | chr3_4:41792786-41792805 | None:intergenic | 45.0% | |
| ! | GGCCCAAGAAGTGATTTTTC+TGG | + | chr3_4:41792792-41792811 | Msa0501120:intron | 45.0% |
| TCTGGAGGAACCCATAAATG+AGG | - | chr3_4:41792868-41792887 | None:intergenic | 45.0% | |
| !! | CATTTGAAAGGCATCTCTGG+AGG | - | chr3_4:41792883-41792902 | None:intergenic | 45.0% |
| CTCCAGAGATGCCTTTCAAA+TGG | + | chr3_4:41792881-41792900 | Msa0501120:intron | 45.0% | |
| !! | GACCATTTGAAAGGCATCTC+TGG | - | chr3_4:41792886-41792905 | None:intergenic | 45.0% |
| GGAATCAGGGACCATTTGAA+AGG | - | chr3_4:41792895-41792914 | None:intergenic | 45.0% | |
| !! | TCAATCTTAGTGTTGGTGGG+TGG | - | chr3_4:41793167-41793186 | None:intergenic | 45.0% |
| ! | CGCATCAATCTTAGTGTTGG+TGG | - | chr3_4:41793171-41793190 | None:intergenic | 45.0% |
| CGGTCTATTCTCATGAATGC+TGG | + | chr3_4:41793203-41793222 | Msa0501120:intron | 45.0% | |
| ! | GAAGCTAGTTGGTGTGCAAA+AGG | - | chr3_4:41793269-41793288 | None:intergenic | 45.0% |
| GCAGGCTGAGAGATAAATGA+AGG | - | chr3_4:41793320-41793339 | None:intergenic | 45.0% | |
| ! | GCTGATGAAGGATCTAGAAC+TGG | + | chr3_4:41793341-41793360 | Msa0501120:CDS | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_4:41791857-41791876 | None:intergenic | 50.0% | |
| ! | ATCAATGGCGGTGCTGAGAA+TGG | + | chr3_4:41791933-41791952 | Msa0501120:exon | 50.0% |
| !! | ACGTCGGTGGAAGTATCAGT+GGG | - | chr3_4:41792048-41792067 | None:intergenic | 50.0% |
| !! | AACGTCGGTGGAAGTATCAG+TGG | - | chr3_4:41792049-41792068 | None:intergenic | 50.0% |
| CTGATACTTCCACCGACGTT+AGG | + | chr3_4:41792049-41792068 | Msa0501120:CDS | 50.0% | |
| TTCCACCGACGTTAGGTTAC+CGG | + | chr3_4:41792056-41792075 | Msa0501120:CDS | 50.0% | |
| TTTCGGAGGTGGAGGAGAAA+GGG | - | chr3_4:41792119-41792138 | None:intergenic | 50.0% | |
| !! | GCAGGTATCGAATCATCTCG+AGG | + | chr3_4:41792755-41792774 | Msa0501120:intron | 50.0% |
| CGGAGGACCTGTACAAAAAC+AGG | - | chr3_4:41793044-41793063 | None:intergenic | 50.0% | |
| TCTCTCCTCCAGACGCATTT+CGG | - | chr3_4:41793064-41793083 | None:intergenic | 50.0% | |
| AGAACTGGAATCAAAGGCCC+CGG | + | chr3_4:41793356-41793375 | Msa0501120:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_4:41791857-41791876 | None:intergenic | 50.0% | |
| ! | ATCAATGGCGGTGCTGAGAA+TGG | + | chr3_4:41791933-41791952 | Msa0501120:exon | 50.0% |
| !! | ACGTCGGTGGAAGTATCAGT+GGG | - | chr3_4:41792048-41792067 | None:intergenic | 50.0% |
| !! | AACGTCGGTGGAAGTATCAG+TGG | - | chr3_4:41792049-41792068 | None:intergenic | 50.0% |
| CTGATACTTCCACCGACGTT+AGG | + | chr3_4:41792049-41792068 | Msa0501120:CDS | 50.0% | |
| TTCCACCGACGTTAGGTTAC+CGG | + | chr3_4:41792056-41792075 | Msa0501120:CDS | 50.0% | |
| TTTCGGAGGTGGAGGAGAAA+GGG | - | chr3_4:41792119-41792138 | None:intergenic | 50.0% | |
| !! | GCAGGTATCGAATCATCTCG+AGG | + | chr3_4:41792755-41792774 | Msa0501120:intron | 50.0% |
| CGGAGGACCTGTACAAAAAC+AGG | - | chr3_4:41793044-41793063 | None:intergenic | 50.0% | |
| TCTCTCCTCCAGACGCATTT+CGG | - | chr3_4:41793064-41793083 | None:intergenic | 50.0% | |
| AGAACTGGAATCAAAGGCCC+CGG | + | chr3_4:41793356-41793375 | Msa0501120:CDS | 50.0% | |
| TGCCTCCGGTAACCTAACGT+CGG | - | chr3_4:41792064-41792083 | None:intergenic | 55.0% | |
| GTTTCGGAGGTGGAGGAGAA+AGG | - | chr3_4:41792120-41792139 | None:intergenic | 55.0% | |
| CTTACCAGAAGCGGTTTCGG+AGG | - | chr3_4:41792133-41792152 | None:intergenic | 55.0% | |
| CTCGAGGGAGTTCCGTTCTA+TGG | + | chr3_4:41792771-41792790 | Msa0501120:intron | 55.0% | |
| CTGGAGGAGAGAGATCGAGA+AGG | + | chr3_4:41793072-41793091 | Msa0501120:CDS | 55.0% | |
| CTAGATCCTTCATCAGCGGC+AGG | - | chr3_4:41793338-41793357 | None:intergenic | 55.0% | |
| TGCCTCCGGTAACCTAACGT+CGG | - | chr3_4:41792064-41792083 | None:intergenic | 55.0% | |
| GTTTCGGAGGTGGAGGAGAA+AGG | - | chr3_4:41792120-41792139 | None:intergenic | 55.0% | |
| CTTACCAGAAGCGGTTTCGG+AGG | - | chr3_4:41792133-41792152 | None:intergenic | 55.0% | |
| CTCGAGGGAGTTCCGTTCTA+TGG | + | chr3_4:41792771-41792790 | Msa0501120:intron | 55.0% | |
| CTGGAGGAGAGAGATCGAGA+AGG | + | chr3_4:41793072-41793091 | Msa0501120:CDS | 55.0% | |
| CTAGATCCTTCATCAGCGGC+AGG | - | chr3_4:41793338-41793357 | None:intergenic | 55.0% | |
| CTCCGGTAACCTAACGTCGG+TGG | - | chr3_4:41792061-41792080 | None:intergenic | 60.0% | |
| CACCGACGTTAGGTTACCGG+AGG | + | chr3_4:41792059-41792078 | Msa0501120:CDS | 60.0% | |
| GAGGCTGATGCTGATGCCTC+CGG | - | chr3_4:41792078-41792097 | None:intergenic | 60.0% | |
| AGAAGCGGTTTCGGAGGTGG+AGG | - | chr3_4:41792127-41792146 | None:intergenic | 60.0% | |
| TCCACCTCCGAAACCGCTTC+TGG | + | chr3_4:41792126-41792145 | Msa0501120:CDS | 60.0% | |
| ACCAGAAGCGGTTTCGGAGG+TGG | - | chr3_4:41792130-41792149 | None:intergenic | 60.0% | |
| CAGGTCCTCCGAAATGCGTC+TGG | + | chr3_4:41793053-41793072 | Msa0501120:intron | 60.0% | |
| GTCCTCCGAAATGCGTCTGG+AGG | + | chr3_4:41793056-41793075 | Msa0501120:CDS | 60.0% | |
| CTCCTCCAGACGCATTTCGG+AGG | - | chr3_4:41793061-41793080 | None:intergenic | 60.0% | |
| GCGGAGGATGCTGCATGGAA+GGG | - | chr3_4:41793229-41793248 | None:intergenic | 60.0% | |
| GGAGTCAACTGTCCTGCACG+CGG | - | chr3_4:41793248-41793267 | None:intergenic | 60.0% | |
| TCTCAGCCTGCCGCTGATGA+AGG | + | chr3_4:41793329-41793348 | Msa0501120:intron | 60.0% | |
| CTCCGGTAACCTAACGTCGG+TGG | - | chr3_4:41792061-41792080 | None:intergenic | 60.0% | |
| CACCGACGTTAGGTTACCGG+AGG | + | chr3_4:41792059-41792078 | Msa0501120:CDS | 60.0% | |
| GAGGCTGATGCTGATGCCTC+CGG | - | chr3_4:41792078-41792097 | None:intergenic | 60.0% | |
| AGAAGCGGTTTCGGAGGTGG+AGG | - | chr3_4:41792127-41792146 | None:intergenic | 60.0% | |
| TCCACCTCCGAAACCGCTTC+TGG | + | chr3_4:41792126-41792145 | Msa0501120:CDS | 60.0% | |
| ACCAGAAGCGGTTTCGGAGG+TGG | - | chr3_4:41792130-41792149 | None:intergenic | 60.0% | |
| CAGGTCCTCCGAAATGCGTC+TGG | + | chr3_4:41793053-41793072 | Msa0501120:intron | 60.0% | |
| GTCCTCCGAAATGCGTCTGG+AGG | + | chr3_4:41793056-41793075 | Msa0501120:CDS | 60.0% | |
| CTCCTCCAGACGCATTTCGG+AGG | - | chr3_4:41793061-41793080 | None:intergenic | 60.0% | |
| GCGGAGGATGCTGCATGGAA+GGG | - | chr3_4:41793229-41793248 | None:intergenic | 60.0% | |
| GGAGTCAACTGTCCTGCACG+CGG | - | chr3_4:41793248-41793267 | None:intergenic | 60.0% | |
| TCTCAGCCTGCCGCTGATGA+AGG | + | chr3_4:41793329-41793348 | Msa0501120:intron | 60.0% | |
| TCAGCATCAGCCTCCTCCGC+CGG | + | chr3_4:41792084-41792103 | Msa0501120:CDS | 65.0% | |
| GGAGAAAGGGCCACGAGCAC+CGG | - | chr3_4:41792106-41792125 | None:intergenic | 65.0% | |
| CGCGGAGGATGCTGCATGGA+AGG | - | chr3_4:41793230-41793249 | None:intergenic | 65.0% | |
| TGCACGCGGAGGATGCTGCA+TGG | - | chr3_4:41793234-41793253 | None:intergenic | 65.0% | |
| ATGCAGCATCCTCCGCGTGC+AGG | + | chr3_4:41793233-41793252 | Msa0501120:intron | 65.0% | |
| GTCAACTGTCCTGCACGCGG+AGG | - | chr3_4:41793245-41793264 | None:intergenic | 65.0% | |
| TCAGCATCAGCCTCCTCCGC+CGG | + | chr3_4:41792084-41792103 | Msa0501120:CDS | 65.0% | |
| GGAGAAAGGGCCACGAGCAC+CGG | - | chr3_4:41792106-41792125 | None:intergenic | 65.0% | |
| CGCGGAGGATGCTGCATGGA+AGG | - | chr3_4:41793230-41793249 | None:intergenic | 65.0% | |
| TGCACGCGGAGGATGCTGCA+TGG | - | chr3_4:41793234-41793253 | None:intergenic | 65.0% | |
| ATGCAGCATCCTCCGCGTGC+AGG | + | chr3_4:41793233-41793252 | Msa0501120:intron | 65.0% | |
| GTCAACTGTCCTGCACGCGG+AGG | - | chr3_4:41793245-41793264 | None:intergenic | 65.0% | |
| !! | GAAAGGGCCACGAGCACCGG+CGG | - | chr3_4:41792103-41792122 | None:intergenic | 70.0% |
| !! | GAAAGGGCCACGAGCACCGG+CGG | - | chr3_4:41792103-41792122 | None:intergenic | 70.0% |
| ! | GCCTCCTCCGCCGGTGCTCG+TGG | + | chr3_4:41792093-41792112 | Msa0501120:CDS | 80.0% |
| !!! | GCCACGAGCACCGGCGGAGG+AGG | - | chr3_4:41792097-41792116 | None:intergenic | 80.0% |
| !!! | AGGGCCACGAGCACCGGCGG+AGG | - | chr3_4:41792100-41792119 | None:intergenic | 80.0% |
| ! | GCCTCCTCCGCCGGTGCTCG+TGG | + | chr3_4:41792093-41792112 | Msa0501120:CDS | 80.0% |
| !!! | GCCACGAGCACCGGCGGAGG+AGG | - | chr3_4:41792097-41792116 | None:intergenic | 80.0% |
| !!! | AGGGCCACGAGCACCGGCGG+AGG | - | chr3_4:41792100-41792119 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41791625 | 41793386 | 41791625 | ID=Msa0501120;Name=Msa0501120 |
| chr3_4 | mRNA | 41791625 | 41793386 | 41791625 | ID=Msa0501120-mRNA-1;Parent=Msa0501120;Name=Msa0501120-mRNA-1;_AED=0.45;_eAED=0.45;_QI=312|0.33|0.25|1|1|1|4|0|139 |
| chr3_4 | exon | 41791625 | 41792147 | 41791625 | ID=Msa0501120-mRNA-1:exon:8831;Parent=Msa0501120-mRNA-1 |
| chr3_4 | exon | 41792751 | 41792758 | 41792751 | ID=Msa0501120-mRNA-1:exon:8832;Parent=Msa0501120-mRNA-1 |
| chr3_4 | exon | 41793056 | 41793204 | 41793056 | ID=Msa0501120-mRNA-1:exon:8833;Parent=Msa0501120-mRNA-1 |
| chr3_4 | exon | 41793335 | 41793386 | 41793335 | ID=Msa0501120-mRNA-1:exon:8834;Parent=Msa0501120-mRNA-1 |
| chr3_4 | five_prime_UTR | 41791625 | 41791936 | 41791625 | ID=Msa0501120-mRNA-1:five_prime_utr;Parent=Msa0501120-mRNA-1 |
| chr3_4 | CDS | 41791937 | 41792147 | 41791937 | ID=Msa0501120-mRNA-1:cds;Parent=Msa0501120-mRNA-1 |
| chr3_4 | CDS | 41792751 | 41792758 | 41792751 | ID=Msa0501120-mRNA-1:cds;Parent=Msa0501120-mRNA-1 |
| chr3_4 | CDS | 41793056 | 41793204 | 41793056 | ID=Msa0501120-mRNA-1:cds;Parent=Msa0501120-mRNA-1 |
| chr3_4 | CDS | 41793335 | 41793386 | 41793335 | ID=Msa0501120-mRNA-1:cds;Parent=Msa0501120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
