Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501140 | XP_003603464.1 | 96.163 | 417 | 15 | 1 | 1 | 417 | 1 | 416 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501140 | sp|Q84MB2|TIF8_ARATH | 38.293 | 410 | 151 | 16 | 28 | 412 | 27 | 359 | 5.41e-47 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501140 | G7JBP9 | 96.163 | 417 | 15 | 1 | 1 | 417 | 1 | 416 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0501140 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0501120 | Msa0501140 | 0.801143 | 1.034779e-48 | -8.615850e-47 |
| Msa0501140 | Msa0501220 | 0.802859 | 4.592917e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501140 | MtrunA17_Chr3g0138401 | 96.163 | 417 | 15 | 1 | 1 | 417 | 1 | 416 | 0.0 | 764 |
| Msa0501140 | MtrunA17_Chr4g0005121 | 88.889 | 72 | 5 | 1 | 1 | 72 | 1 | 69 | 6.78e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501140 | AT4G32570.1 | 38.293 | 410 | 151 | 16 | 28 | 412 | 27 | 359 | 5.50e-48 | 167 |
| Msa0501140 | AT4G32570.2 | 39.228 | 311 | 98 | 10 | 28 | 319 | 27 | 265 | 4.74e-46 | 162 |
Find 141 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTCTGATTCCTCATTTA+TGG | 0.101310 | 3_4:+41804231 | Msa0501140:CDS |
| TGCTTGAACCGTCGGATTTC+TGG | 0.144469 | 3_4:-41807369 | None:intergenic |
| CTAAGATTGATGCGAATAAA+TGG | 0.197424 | 3_4:+41804554 | Msa0501140:CDS |
| ACCAGCTTTGCAGTAGATTT+TGG | 0.210010 | 3_4:-41806695 | None:intergenic |
| AGCAGTAGCAGCTGTGTTTA+TGG | 0.223812 | 3_4:-41804767 | None:intergenic |
| ATTATATTAGTTAGAGGTTT+TGG | 0.247280 | 3_4:-41804832 | None:intergenic |
| CTTATTTCTGATTATTCATT+GGG | 0.297519 | 3_4:+41807489 | Msa0501140:three_prime_UTR |
| AATTCTGATTCCTCATTTAT+GGG | 0.297898 | 3_4:+41804232 | Msa0501140:CDS |
| TCTTATTTCTGATTATTCAT+TGG | 0.313097 | 3_4:+41807488 | Msa0501140:three_prime_UTR |
| GTTTATGGAACTTAAAATTC+CGG | 0.317860 | 3_4:-41804752 | None:intergenic |
| GATGTTATAATGGCTTTAGC+TGG | 0.336522 | 3_4:+41806638 | Msa0501140:CDS |
| GAAGCTGCTTGGCCTGATTA+AGG | 0.341954 | 3_4:-41807686 | None:intergenic |
| CATAGTGGAGAAAATGAAAC+AGG | 0.343306 | 3_4:+41806734 | Msa0501140:CDS |
| CCCACCTCCGAAACCGCTTC+TGG | 0.346559 | 3_4:+41803503 | Msa0501140:CDS |
| CTCGAGGGAGTTCCGTTCTA+TGG | 0.355043 | 3_4:+41804148 | Msa0501140:CDS |
| CTAAATCAGCCACCTTAATC+AGG | 0.358859 | 3_4:+41807674 | Msa0501140:three_prime_UTR |
| GGAGAAAGGGCCACGAGCAC+CGG | 0.363590 | 3_4:-41803480 | None:intergenic |
| AAGCTTAGGGATACCATTTC+AGG | 0.375711 | 3_4:+41804670 | Msa0501140:CDS |
| GATTCTATTATATTAGTTAG+AGG | 0.379814 | 3_4:-41804838 | None:intergenic |
| GACCATTTGAAAGGCATCTC+TGG | 0.380703 | 3_4:-41804260 | None:intergenic |
| TCTCTCCTCCAGACGCATTT+CGG | 0.381595 | 3_4:-41804438 | None:intergenic |
| CAGAAATAAGAGAAAGCTCT+TGG | 0.383667 | 3_4:-41807476 | None:intergenic |
| TTCCACCGACGTTAGGTTAC+CGG | 0.385652 | 3_4:+41803433 | Msa0501140:CDS |
| GTACTTACCAGAAGCGGTTT+CGG | 0.387222 | 3_4:-41803510 | None:intergenic |
| TTTATGGAACTTAAAATTCC+GGG | 0.389295 | 3_4:-41804751 | None:intergenic |
| ACCAGAAGCGGTTTCGGAGG+TGG | 0.406796 | 3_4:-41803504 | None:intergenic |
| ACCAAAATCTACTGCAAAGC+TGG | 0.409213 | 3_4:+41806694 | Msa0501140:CDS |
| CGCATCAATCTTAGTGTTGG+TGG | 0.409917 | 3_4:-41804545 | None:intergenic |
| CGCGGAGGATGCTGCATGGA+AGG | 0.412485 | 3_4:-41804604 | None:intergenic |
| TCTATTGACCAACATTTGTA+AGG | 0.415789 | 3_4:-41807735 | None:intergenic |
| CATGGGAAGTTGTCTGCTAC+TGG | 0.416162 | 3_4:+41806791 | Msa0501140:CDS |
| AACTAGCTTCAAACAAGCTT+AGG | 0.417740 | 3_4:+41804656 | Msa0501140:CDS |
| GCCACGAGCACCGGCGGAGG+AGG | 0.420220 | 3_4:-41803471 | None:intergenic |
| AGCTATGCAGCAGAGTGAAA+TGG | 0.429562 | 3_4:+41803284 | Msa0501140:five_prime_UTR |
| TATGCAGGCTGATGTTATAA+TGG | 0.438508 | 3_4:+41806628 | Msa0501140:intron |
| TGATGATGTCCACCAACATA+AGG | 0.439728 | 3_4:+41805035 | Msa0501140:CDS |
| CAGGTCCTCCGAAATGCGTC+TGG | 0.445569 | 3_4:+41804430 | Msa0501140:intron |
| GATAAATGAAGGGCCTGAAA+TGG | 0.460185 | 3_4:-41804683 | None:intergenic |
| TAAGCTTGTTTGAAGCTAGT+TGG | 0.461069 | 3_4:-41804654 | None:intergenic |
| GCATTCCCACAAGAGCTTCA+TGG | 0.467087 | 3_4:+41806773 | Msa0501140:CDS |
| ATGAGAAAATTTGACAAAAG+AGG | 0.468526 | 3_4:-41807518 | None:intergenic |
| GAAAGGGCCACGAGCACCGG+CGG | 0.469354 | 3_4:-41803477 | None:intergenic |
| CATTCCCACAAGAGCTTCAT+GGG | 0.469855 | 3_4:+41806774 | Msa0501140:CDS |
| CTCCAGAGATGCCTTTCAAA+TGG | 0.470651 | 3_4:+41804258 | Msa0501140:CDS |
| TAAGATTGATGCGAATAAAT+GGG | 0.473687 | 3_4:+41804555 | Msa0501140:CDS |
| GAAGCTAGTTGGTGTGCAAA+AGG | 0.473984 | 3_4:-41804643 | None:intergenic |
| TCAAAACTCGCATTTGATGA+AGG | 0.474807 | 3_4:+41804294 | Msa0501140:CDS |
| CCAGAAGCGGTTTCGGAGGT+GGG | 0.475857 | 3_4:-41803503 | None:intergenic |
| GGAGTAGATACACGATCAAC+AGG | 0.476638 | 3_4:-41806836 | None:intergenic |
| AGGGCCACGAGCACCGGCGG+AGG | 0.478100 | 3_4:-41803474 | None:intergenic |
| CTGGGTCAAATGGTGGATCT+TGG | 0.478685 | 3_4:+41806657 | Msa0501140:CDS |
| CTGATACTTCCACCGACGTT+AGG | 0.478726 | 3_4:+41803426 | Msa0501140:CDS |
| CATCAATTTGGTAGAAAAGC+AGG | 0.480591 | 3_4:+41804114 | Msa0501140:intron |
| GCTATGCAGCAGAGTGAAAT+GGG | 0.481963 | 3_4:+41803285 | Msa0501140:five_prime_UTR |
| ATAGTCGTCTGGCGGCTGGC+AGG | 0.487085 | 3_4:-41804985 | None:intergenic |
| GCCTCCTCCGCCGGTGCTCG+TGG | 0.487582 | 3_4:+41803470 | Msa0501140:CDS |
| ATCAATGGCGGTGCTGAGAA+TGG | 0.489429 | 3_4:+41803310 | Msa0501140:exon |
| ATGGCTTTAGCTGGGTCAAA+TGG | 0.490826 | 3_4:+41806647 | Msa0501140:CDS |
| TCAGCATCAGCCTCCTCCGC+CGG | 0.490900 | 3_4:+41803461 | Msa0501140:CDS |
| AGAAATAAGAGAAAGCTCTT+GGG | 0.490918 | 3_4:-41807475 | None:intergenic |
| GCTGATGAAGGATCTAGAAC+TGG | 0.491143 | 3_4:+41804718 | Msa0501140:CDS |
| AACTTCCCATGAAGCTCTTG+TGG | 0.491396 | 3_4:-41806779 | None:intergenic |
| GAAAATCATGGAGGAAGTGT+TGG | 0.496873 | 3_4:-41803388 | None:intergenic |
| ATGCAGCATCCTCCGCGTGC+AGG | 0.496967 | 3_4:+41804610 | Msa0501140:CDS |
| GAGATAAGTAACAGACTAGT+GGG | 0.497646 | 3_4:+41804196 | Msa0501140:CDS |
| ACTTCCCATGAAGCTCTTGT+GGG | 0.498210 | 3_4:-41806778 | None:intergenic |
| ACTAGCTTCAAACAAGCTTA+GGG | 0.503406 | 3_4:+41804657 | Msa0501140:CDS |
| AAAGATAGTCGTCTGGCGGC+TGG | 0.506163 | 3_4:-41804989 | None:intergenic |
| GCAGGCTGAGAGATAAATGA+AGG | 0.506389 | 3_4:-41804694 | None:intergenic |
| AATGATGACGAAGTGTTACT+TGG | 0.508592 | 3_4:+41804475 | Msa0501140:CDS |
| CTCCATAAAAGATAGTCGTC+TGG | 0.509408 | 3_4:-41804996 | None:intergenic |
| GGATCTGCTGCTTGAACCGT+CGG | 0.509893 | 3_4:-41807377 | None:intergenic |
| AGAAGCGGTTTCGGAGGTGG+GGG | 0.510027 | 3_4:-41803501 | None:intergenic |
| AATAACAACCTTACAAATGT+TGG | 0.511804 | 3_4:+41807727 | Msa0501140:three_prime_UTR |
| AAAATCATGGAGGAAGTGTT+GGG | 0.513221 | 3_4:-41803387 | None:intergenic |
| GGATCTAGAACTGGAATCAA+AGG | 0.514477 | 3_4:+41804727 | Msa0501140:CDS |
| GAGGCTGATGCTGATGCCTC+CGG | 0.517085 | 3_4:-41803452 | None:intergenic |
| TCTCAGCCTGCCGCTGATGA+AGG | 0.519106 | 3_4:+41804706 | Msa0501140:CDS |
| ATTCGCATCAATCTTAGTGT+TGG | 0.520039 | 3_4:-41804548 | None:intergenic |
| ATTATGTGGGGAGCAAGAGT+AGG | 0.524042 | 3_4:+41807570 | Msa0501140:three_prime_UTR |
| CTAGATCCTTCATCAGCGGC+AGG | 0.525101 | 3_4:-41804712 | None:intergenic |
| CGGTCTATTCTCATGAATGC+TGG | 0.526152 | 3_4:+41804580 | Msa0501140:CDS |
| AGTAACACTTCGTCATCATT+AGG | 0.535648 | 3_4:-41804472 | None:intergenic |
| AGTAGGATGATTGTTTAAAG+AGG | 0.538914 | 3_4:+41807587 | Msa0501140:three_prime_UTR |
| GGCAGTTCTAGCCGTGCCGT+TGG | 0.541164 | 3_4:+41806812 | Msa0501140:CDS |
| AATATCTGAGAACTAGAAGA+TGG | 0.544323 | 3_4:-41804514 | None:intergenic |
| CAGAAGCGGTTTCGGAGGTG+GGG | 0.547490 | 3_4:-41803502 | None:intergenic |
| ATGTTATAATGGCTTTAGCT+GGG | 0.549931 | 3_4:+41806639 | Msa0501140:CDS |
| AAGGTTGGACCTTATGTTGG+TGG | 0.550076 | 3_4:-41805044 | None:intergenic |
| TATCAAGACAAGAAGCTGCT+TGG | 0.550491 | 3_4:-41807697 | None:intergenic |
| ATTTCATCTGCAGTGCTGCT+CGG | 0.551203 | 3_4:+41804799 | Msa0501140:CDS |
| GCGGAGGATGCTGCATGGAA+GGG | 0.553889 | 3_4:-41804603 | None:intergenic |
| GCTTCATGCCGAGAAAATCA+TGG | 0.554318 | 3_4:-41803400 | None:intergenic |
| GCATCAATCTTAGTGTTGGT+GGG | 0.554769 | 3_4:-41804544 | None:intergenic |
| TACAAGGTTGGACCTTATGT+TGG | 0.561474 | 3_4:-41805047 | None:intergenic |
| AGAACTGGAATCAAAGGCCC+CGG | 0.567203 | 3_4:+41804733 | Msa0501140:CDS |
| AGAGTGAAATGGGTAATCAA+TGG | 0.572299 | 3_4:+41803295 | Msa0501140:exon |
| GTCAATAGAATCAGAACGAT+AGG | 0.578558 | 3_4:+41807749 | Msa0501140:three_prime_UTR |
| CCGGTTGTAGGGGCGCATCA+AGG | 0.580384 | 3_4:+41807326 | Msa0501140:intron |
| TCACTTCTTGGGCCATAGAA+CGG | 0.581400 | 3_4:-41804160 | None:intergenic |
| TCTGGAGGAACCCATAAATG+AGG | 0.581916 | 3_4:-41804242 | None:intergenic |
| AACGATAGTAACTTGCATAG+TGG | 0.584799 | 3_4:+41806719 | Msa0501140:CDS |
| TGCACGCGGAGGATGCTGCA+TGG | 0.586678 | 3_4:-41804608 | None:intergenic |
| GCTTTAGCTGGGTCAAATGG+TGG | 0.588269 | 3_4:+41806650 | Msa0501140:CDS |
| GATCGTGTATCTACTCCAGC+CGG | 0.597972 | 3_4:+41806842 | Msa0501140:CDS |
| GGAATCAGGGACCATTTGAA+AGG | 0.601761 | 3_4:-41804269 | None:intergenic |
| TACACGATCAACAGGTCCAA+CGG | 0.603243 | 3_4:-41806828 | None:intergenic |
| GATCAACAGGTCCAACGGCA+CGG | 0.605689 | 3_4:-41806823 | None:intergenic |
| CTCCTCCAGACGCATTTCGG+AGG | 0.605747 | 3_4:-41804435 | None:intergenic |
| AACGTCGGTGGAAGTATCAG+TGG | 0.609086 | 3_4:-41803423 | None:intergenic |
| GTCCTCCGAAATGCGTCTGG+AGG | 0.623376 | 3_4:+41804433 | Msa0501140:CDS |
| GTATTGAGCAGCAGTCAACA+TGG | 0.625398 | 3_4:+41804955 | Msa0501140:intron |
| TGAGATAAGTAACAGACTAG+TGG | 0.631355 | 3_4:+41804195 | Msa0501140:CDS |
| TTAGGAGTACTTACCAGAAG+CGG | 0.633996 | 3_4:-41803516 | None:intergenic |
| CTTACCAGAAGCGGTTTCGG+AGG | 0.640461 | 3_4:-41803507 | None:intergenic |
| TTGATGCGAATAAATGGGAA+CGG | 0.646108 | 3_4:+41804560 | Msa0501140:CDS |
| CATTTGAAAGGCATCTCTGG+AGG | 0.646720 | 3_4:-41804257 | None:intergenic |
| CACCGACGTTAGGTTACCGG+AGG | 0.647418 | 3_4:+41803436 | Msa0501140:CDS |
| CTGGAGGAGAGAGATCGAGA+AGG | 0.648772 | 3_4:+41804449 | Msa0501140:CDS |
| CAGGTATCGAATCATCTCGA+GGG | 0.650968 | 3_4:+41804133 | Msa0501140:CDS |
| AGTTCTAGATCCTTCATCAG+CGG | 0.651396 | 3_4:-41804716 | None:intergenic |
| TCAATCTTAGTGTTGGTGGG+TGG | 0.654121 | 3_4:-41804541 | None:intergenic |
| CTCCGGTAACCTAACGTCGG+TGG | 0.654776 | 3_4:-41803435 | None:intergenic |
| ACGTCGGTGGAAGTATCAGT+GGG | 0.655076 | 3_4:-41803422 | None:intergenic |
| GCTGCTTGGCCTGATTAAGG+TGG | 0.658928 | 3_4:-41807683 | None:intergenic |
| GCAGGTATCGAATCATCTCG+AGG | 0.661921 | 3_4:+41804132 | Msa0501140:CDS |
| TTATGGAACTTAAAATTCCG+GGG | 0.662736 | 3_4:-41804750 | None:intergenic |
| TCATCTGCAGTGCTGCTCGG+TGG | 0.664281 | 3_4:+41804802 | Msa0501140:CDS |
| CATAAAAGATAGTCGTCTGG+CGG | 0.666315 | 3_4:-41804993 | None:intergenic |
| GTTGTTAGAAAATGTAGTTG+TGG | 0.667971 | 3_4:-41803149 | None:intergenic |
| GGAGTCAACTGTCCTGCACG+CGG | 0.676528 | 3_4:-41804622 | None:intergenic |
| GTCAACTGTCCTGCACGCGG+AGG | 0.677451 | 3_4:-41804619 | None:intergenic |
| CAGGCTGAGAGATAAATGAA+GGG | 0.677535 | 3_4:-41804693 | None:intergenic |
| TAAAGATACCAGAAATCCGA+CGG | 0.679270 | 3_4:+41807361 | Msa0501140:CDS |
| AACAGGGTTAGTGAGTAATG+TGG | 0.689431 | 3_4:+41806751 | Msa0501140:CDS |
| GTGAAATGGGTAATCAATGG+CGG | 0.690764 | 3_4:+41803298 | Msa0501140:exon |
| TGCCTCCGGTAACCTAACGT+CGG | 0.705158 | 3_4:-41803438 | None:intergenic |
| ATAAGATAGATTTACCTTGG+GGG | 0.712059 | 3_4:-41804868 | None:intergenic |
| ATAGTGGAGAAAATGAAACA+GGG | 0.722474 | 3_4:+41806735 | Msa0501140:CDS |
| AGATAAGTAACAGACTAGTG+GGG | 0.741446 | 3_4:+41804197 | Msa0501140:CDS |
| TCATGCCGAGAAAATCATGG+AGG | 0.774525 | 3_4:-41803397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGATATGAATTTTTA+GGG | + | chr3_4:41803946-41803965 | Msa0501140:intron | 10.0% |
| !!! | AAATGATTTTAATGAAAAAT+TGG | - | chr3_4:41806411-41806430 | None:intergenic | 10.0% |
| !!! | ATTTTTCATTAAAATCATTT+AGG | + | chr3_4:41806411-41806430 | Msa0501140:intron | 10.0% |
| !!! | TTTTTCATTAAAATCATTTA+GGG | + | chr3_4:41806412-41806431 | Msa0501140:intron | 10.0% |
| !! | TTCTAAATATATTAGAATAT+TGG | + | chr3_4:41807144-41807163 | Msa0501140:intron | 10.0% |
| !!! | CATAATCTTTTTTTTTTTTA+AGG | - | chr3_4:41807556-41807575 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAGATTATG+TGG | + | chr3_4:41807556-41807575 | Msa0501140:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAGATTATGT+GGG | + | chr3_4:41807557-41807576 | Msa0501140:three_prime_UTR | 10.0% |
| !!! | ATAATGAATATAACAATTTT+TGG | + | chr3_4:41807774-41807793 | Msa0501140:three_prime_UTR | 10.0% |
| !! | TGAATAAAAAAATGAAACAT+GGG | - | chr3_4:41803574-41803593 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTTCAATAATTAT+AGG | + | chr3_4:41803694-41803713 | Msa0501140:intron | 15.0% |
| !!! | GTATAATGATATGAATTTTT+AGG | + | chr3_4:41803945-41803964 | Msa0501140:intron | 15.0% |
| !!! | GTTTTTATGTTTTCTTTAAA+TGG | + | chr3_4:41804072-41804091 | Msa0501140:intron | 15.0% |
| !! | AGAAAATAATATAAAAGCAA+AGG | - | chr3_4:41804384-41804403 | None:intergenic | 15.0% |
| !!! | TTTAATGAAAAATTGGTTTT+TGG | - | chr3_4:41806404-41806423 | None:intergenic | 15.0% |
| !! | TCTAATATATTTAGAAAGAA+AGG | - | chr3_4:41807140-41807159 | None:intergenic | 15.0% |
| !!! | TTTTTATGTTCATATTCAAT+GGG | + | chr3_4:41807449-41807468 | Msa0501140:three_prime_UTR | 15.0% |
| !! | AAAAAAAAAAAGATTATGTG+GGG | + | chr3_4:41807558-41807577 | Msa0501140:three_prime_UTR | 15.0% |
| !! | AATCAAAACTTTAGTTGTTT+AGG | - | chr3_4:41803537-41803556 | None:intergenic | 20.0% |
| !!! | CAACTAAAGTTTTGATTTTT+AGG | + | chr3_4:41803540-41803559 | Msa0501140:intron | 20.0% |
| !! | GAATAAAAAAATGAAACATG+GGG | - | chr3_4:41803573-41803592 | None:intergenic | 20.0% |
| !! | CTGAATAAAAAAATGAAACA+TGG | - | chr3_4:41803575-41803594 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTGTTCAAAACAA+TGG | - | chr3_4:41803892-41803911 | None:intergenic | 20.0% |
| !!! | TTTTTGGCTATTGAATATAT+TGG | - | chr3_4:41804351-41804370 | None:intergenic | 20.0% |
| !! | TATATTCAATAGCCAAAAAA+AGG | + | chr3_4:41804352-41804371 | Msa0501140:intron | 20.0% |
| !!! | ATTATATTAGTTAGAGGTTT+TGG | - | chr3_4:41804835-41804854 | None:intergenic | 20.0% |
| !! | GATTCTATTATATTAGTTAG+AGG | - | chr3_4:41804841-41804860 | None:intergenic | 20.0% |
| !! | ATATAAGATAGATTTACCTT+GGG | - | chr3_4:41804873-41804892 | None:intergenic | 20.0% |
| !! | TATATAAGATAGATTTACCT+TGG | - | chr3_4:41804874-41804893 | None:intergenic | 20.0% |
| !! | AGTGAAAATAAATAGAAACA+AGG | - | chr3_4:41804914-41804933 | None:intergenic | 20.0% |
| !! | AAATTGTTCCTTAAAAAACT+CGG | + | chr3_4:41805153-41805172 | Msa0501140:intron | 20.0% |
| !!! | TCTTTTCTATCAGATATTAT+TGG | - | chr3_4:41805440-41805459 | None:intergenic | 20.0% |
| !!! | TTTTAACAGTTACTTATCTA+AGG | + | chr3_4:41805544-41805563 | Msa0501140:intron | 20.0% |
| !! | ATACATGTTAAAAAACCATT+CGG | - | chr3_4:41806026-41806045 | None:intergenic | 20.0% |
| !! | TAGACTTGATGTATAAATAT+TGG | + | chr3_4:41806256-41806275 | Msa0501140:intron | 20.0% |
| !! | AAAGATCAAAGAAAATAAAC+AGG | - | chr3_4:41806459-41806478 | None:intergenic | 20.0% |
| !!! | GTTTTTATGTTCATATTCAA+TGG | + | chr3_4:41807448-41807467 | Msa0501140:three_prime_UTR | 20.0% |
| !!! | TCTTATTTCTGATTATTCAT+TGG | + | chr3_4:41807488-41807507 | Msa0501140:three_prime_UTR | 20.0% |
| !!! | CTTATTTCTGATTATTCATT+GGG | + | chr3_4:41807489-41807508 | Msa0501140:three_prime_UTR | 20.0% |
| !!! | GCAATATAAGATGTTTTTTA+CGG | - | chr3_4:41807649-41807668 | None:intergenic | 20.0% |
| !!! | ACAATTTTTGGTTTAAAAAG+AGG | + | chr3_4:41807786-41807805 | Msa0501140:three_prime_UTR | 20.0% |
| ! | TTTCAGAGTGAAAAAACAAA+AGG | - | chr3_4:41803187-41803206 | None:intergenic | 25.0% |
| !!! | TTTCCATTTTTTTCTCTTAG+TGG | + | chr3_4:41803623-41803642 | Msa0501140:intron | 25.0% |
| !!! | TTCCATTTTTTTCTCTTAGT+GGG | + | chr3_4:41803624-41803643 | Msa0501140:intron | 25.0% |
| !! | AATTTATGGTCATGATTTTC+TGG | + | chr3_4:41803766-41803785 | Msa0501140:intron | 25.0% |
| !! | CTGACTCTAAATTATTTTCA+TGG | - | chr3_4:41803838-41803857 | None:intergenic | 25.0% |
| ! | TCTTAGTTTCTTACTTATTC+TGG | + | chr3_4:41804011-41804030 | Msa0501140:intron | 25.0% |
| ! | TAATTCTGATTCCTCATTTA+TGG | + | chr3_4:41804231-41804250 | Msa0501140:CDS | 25.0% |
| ! | AATTCTGATTCCTCATTTAT+GGG | + | chr3_4:41804232-41804251 | Msa0501140:CDS | 25.0% |
| ! | TAAGATTGATGCGAATAAAT+GGG | + | chr3_4:41804555-41804574 | Msa0501140:CDS | 25.0% |
| ! | TTTATGGAACTTAAAATTCC+GGG | - | chr3_4:41804754-41804773 | None:intergenic | 25.0% |
| ! | GTTTATGGAACTTAAAATTC+CGG | - | chr3_4:41804755-41804774 | None:intergenic | 25.0% |
| ! | TATAAGATAGATTTACCTTG+GGG | - | chr3_4:41804872-41804891 | None:intergenic | 25.0% |
| !! | TTGATTGAGTTTATGCATTT+TGG | + | chr3_4:41804933-41804952 | Msa0501140:intron | 25.0% |
| ! | TATGACAAGTTAAGAATACA+AGG | - | chr3_4:41805066-41805085 | None:intergenic | 25.0% |
| ! | AATAATGCCTGAAATTAGTT+TGG | + | chr3_4:41805107-41805126 | Msa0501140:intron | 25.0% |
| ! | ATCATATTTCAGCCAAAATA+CGG | + | chr3_4:41805241-41805260 | Msa0501140:intron | 25.0% |
| ! | AGCTTAAGCAATTCTATTAT+TGG | - | chr3_4:41805474-41805493 | None:intergenic | 25.0% |
| ! | TAATAGAATTGCTTAAGCTT+TGG | + | chr3_4:41805475-41805494 | Msa0501140:intron | 25.0% |
| ! | AATAGAATTGCTTAAGCTTT+GGG | + | chr3_4:41805476-41805495 | Msa0501140:intron | 25.0% |
| ! | AGATAAGTAACTGTTAAAAC+CGG | - | chr3_4:41805543-41805562 | None:intergenic | 25.0% |
| ! | AAATACTTATACAAGTGACT+AGG | - | chr3_4:41805833-41805852 | None:intergenic | 25.0% |
| ! | TAGTCACTTGTATAAGTATT+TGG | + | chr3_4:41805832-41805851 | Msa0501140:intron | 25.0% |
| ! | AATAAGCATTAAAAACCGAA+TGG | + | chr3_4:41806008-41806027 | Msa0501140:intron | 25.0% |
| ! | GAATATTCTGATTTCTAAGT+GGG | + | chr3_4:41806068-41806087 | Msa0501140:intron | 25.0% |
| ! | AATATTCTGATTTCTAAGTG+GGG | + | chr3_4:41806069-41806088 | Msa0501140:intron | 25.0% |
| ! | TATTGCTTGATATTGCTTAT+TGG | + | chr3_4:41806191-41806210 | Msa0501140:intron | 25.0% |
| !! | TTTTTAATCAAAATCCAGTG+AGG | + | chr3_4:41806305-41806324 | Msa0501140:intron | 25.0% |
| ! | AATTCCCCTTAATATGATAT+CGG | + | chr3_4:41806991-41807010 | Msa0501140:intron | 25.0% |
| ! | AATCAAGAAAATATTCGAGT+TGG | - | chr3_4:41807200-41807219 | None:intergenic | 25.0% |
| !! | AGAAGACAAGAATTTTCATA+TGG | - | chr3_4:41807239-41807258 | None:intergenic | 25.0% |
| ! | TTGATTGATTGCTAAATATC+CGG | + | chr3_4:41807307-41807326 | Msa0501140:intron | 25.0% |
| ! | ATGAGAAAATTTGACAAAAG+AGG | - | chr3_4:41807521-41807540 | None:intergenic | 25.0% |
| ! | AATAACAACCTTACAAATGT+TGG | + | chr3_4:41807727-41807746 | Msa0501140:three_prime_UTR | 25.0% |
| !! | CTGTTGTTGGTTGATTTTAA+TGG | - | chr3_4:41803123-41803142 | None:intergenic | 30.0% |
| GTTGTTAGAAAATGTAGTTG+TGG | - | chr3_4:41803152-41803171 | None:intergenic | 30.0% | |
| ! | TGGAAAGTATAGAACTTTAG+TGG | - | chr3_4:41803609-41803628 | None:intergenic | 30.0% |
| !!! | TCCATTTTTTTCTCTTAGTG+GGG | + | chr3_4:41803625-41803644 | Msa0501140:intron | 30.0% |
| AACCAAAGACACAAAATTGA+GGG | - | chr3_4:41803663-41803682 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTGCTTTGTAGCA+TGG | + | chr3_4:41803790-41803809 | Msa0501140:intron | 30.0% |
| !!! | CATTATTTTTGCTGTTGTGT+TGG | + | chr3_4:41803974-41803993 | Msa0501140:intron | 30.0% |
| ! | TTTTCTACCAAATTGATGAG+GGG | - | chr3_4:41804112-41804131 | None:intergenic | 30.0% |
| ! | CTTTTCTACCAAATTGATGA+GGG | - | chr3_4:41804113-41804132 | None:intergenic | 30.0% |
| TTGGCTATTGAATATATTGG+AGG | - | chr3_4:41804348-41804367 | None:intergenic | 30.0% | |
| !!! | CAAAGGCATTTTCCTTTTTT+TGG | - | chr3_4:41804367-41804386 | None:intergenic | 30.0% |
| AATATCTGAGAACTAGAAGA+TGG | - | chr3_4:41804517-41804536 | None:intergenic | 30.0% | |
| CTAAGATTGATGCGAATAAA+TGG | + | chr3_4:41804554-41804573 | Msa0501140:CDS | 30.0% | |
| TTATGGAACTTAAAATTCCG+GGG | - | chr3_4:41804753-41804772 | None:intergenic | 30.0% | |
| ATAAGATAGATTTACCTTGG+GGG | - | chr3_4:41804871-41804890 | None:intergenic | 30.0% | |
| ACAAGTTAAGAATACAAGGT+TGG | - | chr3_4:41805062-41805081 | None:intergenic | 30.0% | |
| ! | TATCTGTTTACTGCATTTTG+TGG | + | chr3_4:41805084-41805103 | Msa0501140:intron | 30.0% |
| ! | TAAGTATCAACACCGTATTT+TGG | - | chr3_4:41805256-41805275 | None:intergenic | 30.0% |
| ! | ATTGCAGTTTCTACATCTTT+TGG | + | chr3_4:41805382-41805401 | Msa0501140:intron | 30.0% |
| ! | CAAATCCATCAAGAATTTTG+AGG | + | chr3_4:41805594-41805613 | Msa0501140:intron | 30.0% |
| GACGTAAAAATTAACTGACT+TGG | + | chr3_4:41805619-41805638 | Msa0501140:intron | 30.0% | |
| CATTGCATTTAAGCTACATT+TGG | + | chr3_4:41805780-41805799 | Msa0501140:intron | 30.0% | |
| TAGTCACTTGTATAAGTACT+TGG | + | chr3_4:41805858-41805877 | Msa0501140:intron | 30.0% | |
| CTATCATGAGGATTACTATT+AGG | - | chr3_4:41805912-41805931 | None:intergenic | 30.0% | |
| ! | TATTTTCACTACTGTAAGAG+TGG | - | chr3_4:41805992-41806011 | None:intergenic | 30.0% |
| GGAATATTCTGATTTCTAAG+TGG | + | chr3_4:41806067-41806086 | Msa0501140:intron | 30.0% | |
| TTCACAGTTGAAGTGATTAA+TGG | - | chr3_4:41806112-41806131 | None:intergenic | 30.0% | |
| ATTGATCAATCAATGCCTTT+GGG | + | chr3_4:41806373-41806392 | Msa0501140:intron | 30.0% | |
| ! | TTAGGGCAAACTCATTTTAA+AGG | + | chr3_4:41806429-41806448 | Msa0501140:intron | 30.0% |
| !! | TTTCTGTCTAGTTCTTGTAA+TGG | + | chr3_4:41806476-41806495 | Msa0501140:intron | 30.0% |
| ! | AGACACATATAGTTTGTCTT+GGG | + | chr3_4:41806512-41806531 | Msa0501140:intron | 30.0% |
| !! | ATGTTATAATGGCTTTAGCT+GGG | + | chr3_4:41806639-41806658 | Msa0501140:CDS | 30.0% |
| ! | ATAGTGGAGAAAATGAAACA+GGG | + | chr3_4:41806735-41806754 | Msa0501140:CDS | 30.0% |
| GCATACTACATAGTTTGATT+TGG | + | chr3_4:41806875-41806894 | Msa0501140:intron | 30.0% | |
| GTATTATCATACCTCCAAAT+TGG | + | chr3_4:41806914-41806933 | Msa0501140:intron | 30.0% | |
| TCTTTCAATCACTACCAATT+TGG | - | chr3_4:41806931-41806950 | None:intergenic | 30.0% | |
| TTGTCCGATATCATATTAAG+GGG | - | chr3_4:41806998-41807017 | None:intergenic | 30.0% | |
| GTTGTCCGATATCATATTAA+GGG | - | chr3_4:41806999-41807018 | None:intergenic | 30.0% | |
| AGTTGTCCGATATCATATTA+AGG | - | chr3_4:41807000-41807019 | None:intergenic | 30.0% | |
| ! | GGATTGTTGAAAGCTAATTT+TGG | - | chr3_4:41807037-41807056 | None:intergenic | 30.0% |
| AAGAAAAGGATGACACAAAA+AGG | - | chr3_4:41807106-41807125 | None:intergenic | 30.0% | |
| ! | CATCCTTTTCTTTACTTTAC+TGG | + | chr3_4:41807114-41807133 | Msa0501140:intron | 30.0% |
| !! | AGAAAATATTCGAGTTGGTA+CGG | - | chr3_4:41807195-41807214 | None:intergenic | 30.0% |
| AGAAATAAGAGAAAGCTCTT+GGG | - | chr3_4:41807478-41807497 | None:intergenic | 30.0% | |
| AGTAGGATGATTGTTTAAAG+AGG | + | chr3_4:41807587-41807606 | Msa0501140:three_prime_UTR | 30.0% | |
| TCTATTGACCAACATTTGTA+AGG | - | chr3_4:41807738-41807757 | None:intergenic | 30.0% | |
| AGAGTGAAATGGGTAATCAA+TGG | + | chr3_4:41803295-41803314 | Msa0501140:exon | 35.0% | |
| AACAACAACAACAACATCAG+TGG | + | chr3_4:41803362-41803381 | Msa0501140:CDS | 35.0% | |
| ACAACAACAACAACATCAGT+GGG | + | chr3_4:41803363-41803382 | Msa0501140:CDS | 35.0% | |
| !! | AAAATCATGGAGGAAGTGTT+GGG | - | chr3_4:41803390-41803409 | None:intergenic | 35.0% |
| ACCCCACTAAGAGAAAAAAA+TGG | - | chr3_4:41803629-41803648 | None:intergenic | 35.0% | |
| ! | TTCCCTCAATTTTGTGTCTT+TGG | + | chr3_4:41803658-41803677 | Msa0501140:intron | 35.0% |
| CAACCAAAGACACAAAATTG+AGG | - | chr3_4:41803664-41803683 | None:intergenic | 35.0% | |
| ! | CTCAATTTTGTGTCTTTGGT+TGG | + | chr3_4:41803662-41803681 | Msa0501140:intron | 35.0% |
| TTTGTGTCTTTGGTTGGATT+TGG | + | chr3_4:41803668-41803687 | Msa0501140:intron | 35.0% | |
| ! | GTAGTGTGTTTGAAGTTAGT+TGG | + | chr3_4:41803716-41803735 | Msa0501140:intron | 35.0% |
| GACCATAAATTTGCATACCA+AGG | - | chr3_4:41803757-41803776 | None:intergenic | 35.0% | |
| TCATGTGAATGTTTGTGCAT+TGG | + | chr3_4:41803919-41803938 | Msa0501140:intron | 35.0% | |
| CATGTGAATGTTTGTGCATT+GGG | + | chr3_4:41803920-41803939 | Msa0501140:intron | 35.0% | |
| ! | TGTTTTACCCCTCATCAATT+TGG | + | chr3_4:41804102-41804121 | Msa0501140:intron | 35.0% |
| ! | GCTTTTCTACCAAATTGATG+AGG | - | chr3_4:41804114-41804133 | None:intergenic | 35.0% |
| CATCAATTTGGTAGAAAAGC+AGG | + | chr3_4:41804114-41804133 | Msa0501140:intron | 35.0% | |
| TGCCAGAAAAATCACTTCTT+GGG | - | chr3_4:41804174-41804193 | None:intergenic | 35.0% | |
| TGAGATAAGTAACAGACTAG+TGG | + | chr3_4:41804195-41804214 | Msa0501140:CDS | 35.0% | |
| GAGATAAGTAACAGACTAGT+GGG | + | chr3_4:41804196-41804215 | Msa0501140:CDS | 35.0% | |
| AGATAAGTAACAGACTAGTG+GGG | + | chr3_4:41804197-41804216 | Msa0501140:CDS | 35.0% | |
| !!! | CATCAAATGCGAGTTTTGAA+AGG | - | chr3_4:41804293-41804312 | None:intergenic | 35.0% |
| TCAAAACTCGCATTTGATGA+AGG | + | chr3_4:41804294-41804313 | Msa0501140:CDS | 35.0% | |
| !!! | CTTAAGTCCTGTTTTTGTAC+AGG | + | chr3_4:41804411-41804430 | Msa0501140:intron | 35.0% |
| AGTAACACTTCGTCATCATT+AGG | - | chr3_4:41804475-41804494 | None:intergenic | 35.0% | |
| ! | AATGATGACGAAGTGTTACT+TGG | + | chr3_4:41804475-41804494 | Msa0501140:CDS | 35.0% |
| ATTCGCATCAATCTTAGTGT+TGG | - | chr3_4:41804551-41804570 | None:intergenic | 35.0% | |
| TTGATGCGAATAAATGGGAA+CGG | + | chr3_4:41804560-41804579 | Msa0501140:CDS | 35.0% | |
| ! | TAAGCTTGTTTGAAGCTAGT+TGG | - | chr3_4:41804657-41804676 | None:intergenic | 35.0% |
| ! | AACTAGCTTCAAACAAGCTT+AGG | + | chr3_4:41804656-41804675 | Msa0501140:CDS | 35.0% |
| ! | ACTAGCTTCAAACAAGCTTA+GGG | + | chr3_4:41804657-41804676 | Msa0501140:CDS | 35.0% |
| CACAGATCCAAACTAATTTC+AGG | - | chr3_4:41805117-41805136 | None:intergenic | 35.0% | |
| TTTGGATCTGTGAATCATCA+TGG | + | chr3_4:41805125-41805144 | Msa0501140:intron | 35.0% | |
| TTGGATCTGTGAATCATCAT+GGG | + | chr3_4:41805126-41805145 | Msa0501140:intron | 35.0% | |
| ATCAGATTTCTGCCGAAATA+TGG | + | chr3_4:41805322-41805341 | Msa0501140:intron | 35.0% | |
| TGAGTATCAACGCCATATTT+CGG | - | chr3_4:41805337-41805356 | None:intergenic | 35.0% | |
| TAGAAACTGCAATATGAGTG+TGG | - | chr3_4:41805375-41805394 | None:intergenic | 35.0% | |
| ! | TTGGTAGTCATTGCACAATA+TGG | + | chr3_4:41805401-41805420 | Msa0501140:intron | 35.0% |
| ! | AAAACAGTCTTTTCTCTTGC+CGG | + | chr3_4:41805521-41805540 | Msa0501140:intron | 35.0% |
| GTTTGATGCAAAATGCTAGA+AGG | - | chr3_4:41805573-41805592 | None:intergenic | 35.0% | |
| !! | ATCCATCAAGAATTTTGAGG+CGG | + | chr3_4:41805597-41805616 | Msa0501140:intron | 35.0% |
| CACATCTATAAGCTATCATG+AGG | - | chr3_4:41805924-41805943 | None:intergenic | 35.0% | |
| ACATGTATACCCAAGACAAT+AGG | + | chr3_4:41806038-41806057 | Msa0501140:intron | 35.0% | |
| CATGTATACCCAAGACAATA+GGG | + | chr3_4:41806039-41806058 | Msa0501140:intron | 35.0% | |
| !! | CCTTTCTCGTTTTATTGAGA+TGG | - | chr3_4:41806139-41806158 | None:intergenic | 35.0% |
| CCATCTCAATAAAACGAGAA+AGG | + | chr3_4:41806136-41806155 | Msa0501140:intron | 35.0% | |
| CAATACATCTCGCATTTCAA+AGG | - | chr3_4:41806176-41806195 | None:intergenic | 35.0% | |
| TCAAGTCTAAAAGTAACGCT+CGG | - | chr3_4:41806245-41806264 | None:intergenic | 35.0% | |
| ACAATTTAACTGATCCTCAC+TGG | - | chr3_4:41806322-41806341 | None:intergenic | 35.0% | |
| ! | TTCTAAATTCCGACTTGAGT+TGG | + | chr3_4:41806346-41806365 | Msa0501140:intron | 35.0% |
| CATTGATCAATCAATGCCTT+TGG | + | chr3_4:41806372-41806391 | Msa0501140:intron | 35.0% | |
| ! | GAGACACATATAGTTTGTCT+TGG | + | chr3_4:41806511-41806530 | Msa0501140:intron | 35.0% |
| CTTCACAAACTCATAACAGA+AGG | + | chr3_4:41806543-41806562 | Msa0501140:intron | 35.0% | |
| TATGCAGGCTGATGTTATAA+TGG | + | chr3_4:41806628-41806647 | Msa0501140:intron | 35.0% | |
| !! | GATGTTATAATGGCTTTAGC+TGG | + | chr3_4:41806638-41806657 | Msa0501140:CDS | 35.0% |
| ! | AACGATAGTAACTTGCATAG+TGG | + | chr3_4:41806719-41806738 | Msa0501140:CDS | 35.0% |
| ! | CATAGTGGAGAAAATGAAAC+AGG | + | chr3_4:41806734-41806753 | Msa0501140:CDS | 35.0% |
| CAAACTATGTAGTATGCTTG+AGG | - | chr3_4:41806872-41806891 | None:intergenic | 35.0% | |
| TTCAATCACTACCAATTTGG+AGG | - | chr3_4:41806928-41806947 | None:intergenic | 35.0% | |
| ! | ACAAAAAGGATCAGTGGATT+TGG | - | chr3_4:41807092-41807111 | None:intergenic | 35.0% |
| AGGCCAGTAAAGTAAAGAAA+AGG | - | chr3_4:41807120-41807139 | None:intergenic | 35.0% | |
| !! | GAAAATATTCGAGTTGGTAC+GGG | - | chr3_4:41807194-41807213 | None:intergenic | 35.0% |
| ATTGCTAAATATCCGGTTGT+AGG | + | chr3_4:41807314-41807333 | Msa0501140:intron | 35.0% | |
| TTGCTAAATATCCGGTTGTA+GGG | + | chr3_4:41807315-41807334 | Msa0501140:intron | 35.0% | |
| TAAAGATACCAGAAATCCGA+CGG | + | chr3_4:41807361-41807380 | Msa0501140:CDS | 35.0% | |
| CAGAAATAAGAGAAAGCTCT+TGG | - | chr3_4:41807479-41807498 | None:intergenic | 35.0% | |
| GTCAATAGAATCAGAACGAT+AGG | + | chr3_4:41807749-41807768 | Msa0501140:three_prime_UTR | 35.0% | |
| ! | GTTGTGGAGTTTTCTGTTGT+TGG | - | chr3_4:41803136-41803155 | None:intergenic | 40.0% |
| GTGAAATGGGTAATCAATGG+CGG | + | chr3_4:41803298-41803317 | Msa0501140:exon | 40.0% | |
| ! | GAAAATCATGGAGGAAGTGT+TGG | - | chr3_4:41803391-41803410 | None:intergenic | 40.0% |
| ! | CACTTCCTCCATGATTTTCT+CGG | + | chr3_4:41803392-41803411 | Msa0501140:CDS | 40.0% |
| !! | TTAGGAGTACTTACCAGAAG+CGG | - | chr3_4:41803519-41803538 | None:intergenic | 40.0% |
| CGCCTTGGTATGCAAATTTA+TGG | + | chr3_4:41803752-41803771 | Msa0501140:intron | 40.0% | |
| GTGCCAGAAAAATCACTTCT+TGG | - | chr3_4:41804175-41804194 | None:intergenic | 40.0% | |
| !!! | GCGAGTTTTGAAAGGAATCA+GGG | - | chr3_4:41804285-41804304 | None:intergenic | 40.0% |
| !!! | TGCGAGTTTTGAAAGGAATC+AGG | - | chr3_4:41804286-41804305 | None:intergenic | 40.0% |
| !! | GCATCAATCTTAGTGTTGGT+GGG | - | chr3_4:41804547-41804566 | None:intergenic | 40.0% |
| AAGCTTAGGGATACCATTTC+AGG | + | chr3_4:41804670-41804689 | Msa0501140:CDS | 40.0% | |
| GATAAATGAAGGGCCTGAAA+TGG | - | chr3_4:41804686-41804705 | None:intergenic | 40.0% | |
| CAGGCTGAGAGATAAATGAA+GGG | - | chr3_4:41804696-41804715 | None:intergenic | 40.0% | |
| !! | AGTTCTAGATCCTTCATCAG+CGG | - | chr3_4:41804719-41804738 | None:intergenic | 40.0% |
| ! | GGATCTAGAACTGGAATCAA+AGG | + | chr3_4:41804727-41804746 | Msa0501140:CDS | 40.0% |
| CATAAAAGATAGTCGTCTGG+CGG | - | chr3_4:41804996-41805015 | None:intergenic | 40.0% | |
| CTCCATAAAAGATAGTCGTC+TGG | - | chr3_4:41804999-41805018 | None:intergenic | 40.0% | |
| ! | CAGACGACTATCTTTTATGG+AGG | + | chr3_4:41804997-41805016 | Msa0501140:CDS | 40.0% |
| ! | TGATGATGTCCACCAACATA+AGG | + | chr3_4:41805035-41805054 | Msa0501140:CDS | 40.0% |
| TACAAGGTTGGACCTTATGT+TGG | - | chr3_4:41805050-41805069 | None:intergenic | 40.0% | |
| TCCTTAAAAAACTCGGTCTG+TGG | + | chr3_4:41805160-41805179 | Msa0501140:intron | 40.0% | |
| !!! | ACCACAGACCGAGTTTTTTA+AGG | - | chr3_4:41805164-41805183 | None:intergenic | 40.0% |
| GTCTGTGGTTTATTCGTGAT+TGG | + | chr3_4:41805175-41805194 | Msa0501140:intron | 40.0% | |
| ACTGCAATATGAGTGTGGTA+CGG | - | chr3_4:41805370-41805389 | None:intergenic | 40.0% | |
| GTAGTCATTGCACAATATGG+TGG | + | chr3_4:41805404-41805423 | Msa0501140:intron | 40.0% | |
| !! | TTAAGCTTTGGGTACACTGA+TGG | + | chr3_4:41805487-41805506 | Msa0501140:intron | 40.0% |
| TCATATGCACTCTCAACGAA+AGG | - | chr3_4:41805699-41805718 | None:intergenic | 40.0% | |
| CCTGCTTGGTTAAGATTTCA+GGG | - | chr3_4:41805747-41805766 | None:intergenic | 40.0% | |
| CCTGAAATCTTAACCAAGCA+GGG | + | chr3_4:41805745-41805764 | Msa0501140:intron | 40.0% | |
| GCTGAATGAGAATCAAAGAG+GGG | - | chr3_4:41805962-41805981 | None:intergenic | 40.0% | |
| GGCTGAATGAGAATCAAAGA+GGG | - | chr3_4:41805963-41805982 | None:intergenic | 40.0% | |
| CTACTGTAAGAGTGGAGTTT+GGG | - | chr3_4:41805984-41806003 | None:intergenic | 40.0% | |
| ACTACTGTAAGAGTGGAGTT+TGG | - | chr3_4:41805985-41806004 | None:intergenic | 40.0% | |
| TTCTGATTTCTAAGTGGGGT+AGG | + | chr3_4:41806073-41806092 | Msa0501140:intron | 40.0% | |
| TCAATGTAGCCAACTCAAGT+CGG | - | chr3_4:41806358-41806377 | None:intergenic | 40.0% | |
| !!! | TGGTTTTTGGTAAAGCCCAA+AGG | - | chr3_4:41806391-41806410 | None:intergenic | 40.0% |
| ACCAAAATCTACTGCAAAGC+TGG | + | chr3_4:41806694-41806713 | Msa0501140:CDS | 40.0% | |
| ! | ACCAGCTTTGCAGTAGATTT+TGG | - | chr3_4:41806698-41806717 | None:intergenic | 40.0% |
| ! | AACAGGGTTAGTGAGTAATG+TGG | + | chr3_4:41806751-41806770 | Msa0501140:CDS | 40.0% |
| GTAGTATGCTTGAGGATTAC+CGG | - | chr3_4:41806864-41806883 | None:intergenic | 40.0% | |
| TACTGCAGACGATATGTTTG+GGG | - | chr3_4:41806969-41806988 | None:intergenic | 40.0% | |
| CTACTGCAGACGATATGTTT+GGG | - | chr3_4:41806970-41806989 | None:intergenic | 40.0% | |
| ACTACTGCAGACGATATGTT+TGG | - | chr3_4:41806971-41806990 | None:intergenic | 40.0% | |
| GATGACACAAAAAGGATCAG+TGG | - | chr3_4:41807098-41807117 | None:intergenic | 40.0% | |
| TGCTAAATATCCGGTTGTAG+GGG | + | chr3_4:41807316-41807335 | Msa0501140:intron | 40.0% | |
| CTAAATCAGCCACCTTAATC+AGG | + | chr3_4:41807674-41807693 | Msa0501140:three_prime_UTR | 40.0% | |
| TATCAAGACAAGAAGCTGCT+TGG | - | chr3_4:41807700-41807719 | None:intergenic | 40.0% | |
| AGCTATGCAGCAGAGTGAAA+TGG | + | chr3_4:41803284-41803303 | Msa0501140:five_prime_UTR | 45.0% | |
| GCTATGCAGCAGAGTGAAAT+GGG | + | chr3_4:41803285-41803304 | Msa0501140:five_prime_UTR | 45.0% | |
| TCATGCCGAGAAAATCATGG+AGG | - | chr3_4:41803400-41803419 | None:intergenic | 45.0% | |
| GCTTCATGCCGAGAAAATCA+TGG | - | chr3_4:41803403-41803422 | None:intergenic | 45.0% | |
| GTACTTACCAGAAGCGGTTT+CGG | - | chr3_4:41803513-41803532 | None:intergenic | 45.0% | |
| !! | GGAGTTGATTGTTTTCGCCT+TGG | + | chr3_4:41803737-41803756 | Msa0501140:intron | 45.0% |
| !! | CAGGTATCGAATCATCTCGA+GGG | + | chr3_4:41804133-41804152 | Msa0501140:CDS | 45.0% |
| TCACTTCTTGGGCCATAGAA+CGG | - | chr3_4:41804163-41804182 | None:intergenic | 45.0% | |
| ! | GGCCCAAGAAGTGATTTTTC+TGG | + | chr3_4:41804169-41804188 | Msa0501140:CDS | 45.0% |
| TCTGGAGGAACCCATAAATG+AGG | - | chr3_4:41804245-41804264 | None:intergenic | 45.0% | |
| !! | CATTTGAAAGGCATCTCTGG+AGG | - | chr3_4:41804260-41804279 | None:intergenic | 45.0% |
| CTCCAGAGATGCCTTTCAAA+TGG | + | chr3_4:41804258-41804277 | Msa0501140:CDS | 45.0% | |
| !! | GACCATTTGAAAGGCATCTC+TGG | - | chr3_4:41804263-41804282 | None:intergenic | 45.0% |
| GGAATCAGGGACCATTTGAA+AGG | - | chr3_4:41804272-41804291 | None:intergenic | 45.0% | |
| !! | TCAATCTTAGTGTTGGTGGG+TGG | - | chr3_4:41804544-41804563 | None:intergenic | 45.0% |
| ! | CGCATCAATCTTAGTGTTGG+TGG | - | chr3_4:41804548-41804567 | None:intergenic | 45.0% |
| CGGTCTATTCTCATGAATGC+TGG | + | chr3_4:41804580-41804599 | Msa0501140:CDS | 45.0% | |
| ! | GAAGCTAGTTGGTGTGCAAA+AGG | - | chr3_4:41804646-41804665 | None:intergenic | 45.0% |
| GCAGGCTGAGAGATAAATGA+AGG | - | chr3_4:41804697-41804716 | None:intergenic | 45.0% | |
| ! | GCTGATGAAGGATCTAGAAC+TGG | + | chr3_4:41804718-41804737 | Msa0501140:CDS | 45.0% |
| AGCAGTAGCAGCTGTGTTTA+TGG | - | chr3_4:41804770-41804789 | None:intergenic | 45.0% | |
| ! | ATTTCATCTGCAGTGCTGCT+CGG | + | chr3_4:41804799-41804818 | Msa0501140:CDS | 45.0% |
| GTATTGAGCAGCAGTCAACA+TGG | + | chr3_4:41804955-41804974 | Msa0501140:intron | 45.0% | |
| ! | CGCCAGACGACTATCTTTTA+TGG | + | chr3_4:41804994-41805013 | Msa0501140:CDS | 45.0% |
| AAGGTTGGACCTTATGTTGG+TGG | - | chr3_4:41805047-41805066 | None:intergenic | 45.0% | |
| GTCCGCCTCAAAATTCTTGA+TGG | - | chr3_4:41805602-41805621 | None:intergenic | 45.0% | |
| CCCTGAAATCTTAACCAAGC+AGG | + | chr3_4:41805744-41805763 | Msa0501140:intron | 45.0% | |
| CCCTGCTTGGTTAAGATTTC+AGG | - | chr3_4:41805748-41805767 | None:intergenic | 45.0% | |
| TTATAGATGTGAAGCCTGCC+CGG | + | chr3_4:41805933-41805952 | Msa0501140:intron | 45.0% | |
| GGGCTGAATGAGAATCAAAG+AGG | - | chr3_4:41805964-41805983 | None:intergenic | 45.0% | |
| ! | CATGACTTTTGCACGCTCTT+TGG | + | chr3_4:41806603-41806622 | Msa0501140:intron | 45.0% |
| !! | ATGGCTTTAGCTGGGTCAAA+TGG | + | chr3_4:41806647-41806666 | Msa0501140:CDS | 45.0% |
| CATTCCCACAAGAGCTTCAT+GGG | + | chr3_4:41806774-41806793 | Msa0501140:CDS | 45.0% | |
| ACTTCCCATGAAGCTCTTGT+GGG | - | chr3_4:41806781-41806800 | None:intergenic | 45.0% | |
| AACTTCCCATGAAGCTCTTG+TGG | - | chr3_4:41806782-41806801 | None:intergenic | 45.0% | |
| TACACGATCAACAGGTCCAA+CGG | - | chr3_4:41806831-41806850 | None:intergenic | 45.0% | |
| GGAGTAGATACACGATCAAC+AGG | - | chr3_4:41806839-41806858 | None:intergenic | 45.0% | |
| ! | GCTCTTTTGTCTTCGGAACT+GGG | - | chr3_4:41807401-41807420 | None:intergenic | 45.0% |
| ! | TCACTGCGCTCTTTTGTCTT+CGG | - | chr3_4:41807408-41807427 | None:intergenic | 45.0% |
| ATTATGTGGGGAGCAAGAGT+AGG | + | chr3_4:41807570-41807589 | Msa0501140:three_prime_UTR | 45.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_4:41803222-41803241 | None:intergenic | 50.0% | |
| ! | ATCAATGGCGGTGCTGAGAA+TGG | + | chr3_4:41803310-41803329 | Msa0501140:exon | 50.0% |
| !! | ACGTCGGTGGAAGTATCAGT+GGG | - | chr3_4:41803425-41803444 | None:intergenic | 50.0% |
| !! | AACGTCGGTGGAAGTATCAG+TGG | - | chr3_4:41803426-41803445 | None:intergenic | 50.0% |
| CTGATACTTCCACCGACGTT+AGG | + | chr3_4:41803426-41803445 | Msa0501140:CDS | 50.0% | |
| TTCCACCGACGTTAGGTTAC+CGG | + | chr3_4:41803433-41803452 | Msa0501140:CDS | 50.0% | |
| !! | GCAGGTATCGAATCATCTCG+AGG | + | chr3_4:41804132-41804151 | Msa0501140:CDS | 50.0% |
| CGGAGGACCTGTACAAAAAC+AGG | - | chr3_4:41804421-41804440 | None:intergenic | 50.0% | |
| TCTCTCCTCCAGACGCATTT+CGG | - | chr3_4:41804441-41804460 | None:intergenic | 50.0% | |
| AGAACTGGAATCAAAGGCCC+CGG | + | chr3_4:41804733-41804752 | Msa0501140:CDS | 50.0% | |
| ATAGATTTACCTTGGGGGCG+TGG | - | chr3_4:41804866-41804885 | None:intergenic | 50.0% | |
| GTTAGACATGCACTCCCTGA+AGG | + | chr3_4:41805661-41805680 | Msa0501140:intron | 50.0% | |
| AGAATCAAAGAGGGGACTCC+GGG | - | chr3_4:41805954-41805973 | None:intergenic | 50.0% | |
| GAGAATCAAAGAGGGGACTC+CGG | - | chr3_4:41805955-41805974 | None:intergenic | 50.0% | |
| TACCCAAGACAATAGGGTGC+AGG | + | chr3_4:41806045-41806064 | Msa0501140:intron | 50.0% | |
| ACCCAAGACAATAGGGTGCA+GGG | + | chr3_4:41806046-41806065 | Msa0501140:intron | 50.0% | |
| TCCCTGCACCCTATTGTCTT+GGG | - | chr3_4:41806050-41806069 | None:intergenic | 50.0% | |
| TTCCCTGCACCCTATTGTCT+TGG | - | chr3_4:41806051-41806070 | None:intergenic | 50.0% | |
| GTGGGGTAGGAAAACTGTAG+TGG | + | chr3_4:41806086-41806105 | Msa0501140:intron | 50.0% | |
| GCTTTAGCTGGGTCAAATGG+TGG | + | chr3_4:41806650-41806669 | Msa0501140:CDS | 50.0% | |
| !! | CTGGGTCAAATGGTGGATCT+TGG | + | chr3_4:41806657-41806676 | Msa0501140:CDS | 50.0% |
| GCATTCCCACAAGAGCTTCA+TGG | + | chr3_4:41806773-41806792 | Msa0501140:CDS | 50.0% | |
| CATGGGAAGTTGTCTGCTAC+TGG | + | chr3_4:41806791-41806810 | Msa0501140:CDS | 50.0% | |
| GATCGTGTATCTACTCCAGC+CGG | + | chr3_4:41806842-41806861 | Msa0501140:CDS | 50.0% | |
| TATGCTTGAGGATTACCGGC+TGG | - | chr3_4:41806860-41806879 | None:intergenic | 50.0% | |
| ! | CGCGCAGTTTTCGATCTCAA+CGG | - | chr3_4:41807058-41807077 | None:intergenic | 50.0% |
| TTGGTACGGGCAAGGTCTAA+AGG | - | chr3_4:41807181-41807200 | None:intergenic | 50.0% | |
| !! | TATTCGAGTTGGTACGGGCA+AGG | - | chr3_4:41807189-41807208 | None:intergenic | 50.0% |
| TGCTTGAACCGTCGGATTTC+TGG | - | chr3_4:41807372-41807391 | None:intergenic | 50.0% | |
| ! | CGCTCTTTTGTCTTCGGAAC+TGG | - | chr3_4:41807402-41807421 | None:intergenic | 50.0% |
| GAAGCTGCTTGGCCTGATTA+AGG | - | chr3_4:41807689-41807708 | None:intergenic | 50.0% | |
| TGCCTCCGGTAACCTAACGT+CGG | - | chr3_4:41803441-41803460 | None:intergenic | 55.0% | |
| TTTCGGAGGTGGGGGAGAAA+GGG | - | chr3_4:41803496-41803515 | None:intergenic | 55.0% | |
| CTTACCAGAAGCGGTTTCGG+AGG | - | chr3_4:41803510-41803529 | None:intergenic | 55.0% | |
| CTCGAGGGAGTTCCGTTCTA+TGG | + | chr3_4:41804148-41804167 | Msa0501140:CDS | 55.0% | |
| CTGGAGGAGAGAGATCGAGA+AGG | + | chr3_4:41804449-41804468 | Msa0501140:CDS | 55.0% | |
| CTAGATCCTTCATCAGCGGC+AGG | - | chr3_4:41804715-41804734 | None:intergenic | 55.0% | |
| TAGAATCATCCACGCCCCCA+AGG | + | chr3_4:41804854-41804873 | Msa0501140:CDS | 55.0% | |
| AAAGATAGTCGTCTGGCGGC+TGG | - | chr3_4:41804992-41805011 | None:intergenic | 55.0% | |
| GGAGCTCTGTTGCTCCTTCA+GGG | - | chr3_4:41805678-41805697 | None:intergenic | 55.0% | |
| AGGAGCTCTGTTGCTCCTTC+AGG | - | chr3_4:41805679-41805698 | None:intergenic | 55.0% | |
| ! | GCACGCTCTTTGGTGTATGC+AGG | + | chr3_4:41806613-41806632 | Msa0501140:intron | 55.0% |
| GATCAACAGGTCCAACGGCA+CGG | - | chr3_4:41806826-41806845 | None:intergenic | 55.0% | |
| ! | GGATCTGCTGCTTGAACCGT+CGG | - | chr3_4:41807380-41807399 | None:intergenic | 55.0% |
| GCTGCTTGGCCTGATTAAGG+TGG | - | chr3_4:41807686-41807705 | None:intergenic | 55.0% | |
| CTCCGGTAACCTAACGTCGG+TGG | - | chr3_4:41803438-41803457 | None:intergenic | 60.0% | |
| CACCGACGTTAGGTTACCGG+AGG | + | chr3_4:41803436-41803455 | Msa0501140:CDS | 60.0% | |
| GAGGCTGATGCTGATGCCTC+CGG | - | chr3_4:41803455-41803474 | None:intergenic | 60.0% | |
| GTTTCGGAGGTGGGGGAGAA+AGG | - | chr3_4:41803497-41803516 | None:intergenic | 60.0% | |
| AGAAGCGGTTTCGGAGGTGG+GGG | - | chr3_4:41803504-41803523 | None:intergenic | 60.0% | |
| CAGAAGCGGTTTCGGAGGTG+GGG | - | chr3_4:41803505-41803524 | None:intergenic | 60.0% | |
| CCAGAAGCGGTTTCGGAGGT+GGG | - | chr3_4:41803506-41803525 | None:intergenic | 60.0% | |
| ACCAGAAGCGGTTTCGGAGG+TGG | - | chr3_4:41803507-41803526 | None:intergenic | 60.0% | |
| CAGGTCCTCCGAAATGCGTC+TGG | + | chr3_4:41804430-41804449 | Msa0501140:intron | 60.0% | |
| GTCCTCCGAAATGCGTCTGG+AGG | + | chr3_4:41804433-41804452 | Msa0501140:CDS | 60.0% | |
| CTCCTCCAGACGCATTTCGG+AGG | - | chr3_4:41804438-41804457 | None:intergenic | 60.0% | |
| GCGGAGGATGCTGCATGGAA+GGG | - | chr3_4:41804606-41804625 | None:intergenic | 60.0% | |
| GGAGTCAACTGTCCTGCACG+CGG | - | chr3_4:41804625-41804644 | None:intergenic | 60.0% | |
| TCTCAGCCTGCCGCTGATGA+AGG | + | chr3_4:41804706-41804725 | Msa0501140:CDS | 60.0% | |
| ! | TCATCTGCAGTGCTGCTCGG+TGG | + | chr3_4:41804802-41804821 | Msa0501140:CDS | 60.0% |
| CCTTGATGCGCCCCTACAAC+CGG | - | chr3_4:41807329-41807348 | None:intergenic | 60.0% | |
| TCAGCATCAGCCTCCTCCGC+CGG | + | chr3_4:41803461-41803480 | Msa0501140:CDS | 65.0% | |
| GGAGAAAGGGCCACGAGCAC+CGG | - | chr3_4:41803483-41803502 | None:intergenic | 65.0% | |
| CCCACCTCCGAAACCGCTTC+TGG | + | chr3_4:41803503-41803522 | Msa0501140:CDS | 65.0% | |
| CGCGGAGGATGCTGCATGGA+AGG | - | chr3_4:41804607-41804626 | None:intergenic | 65.0% | |
| TGCACGCGGAGGATGCTGCA+TGG | - | chr3_4:41804611-41804630 | None:intergenic | 65.0% | |
| ATGCAGCATCCTCCGCGTGC+AGG | + | chr3_4:41804610-41804629 | Msa0501140:CDS | 65.0% | |
| GTCAACTGTCCTGCACGCGG+AGG | - | chr3_4:41804622-41804641 | None:intergenic | 65.0% | |
| ATAGTCGTCTGGCGGCTGGC+AGG | - | chr3_4:41804988-41805007 | None:intergenic | 65.0% | |
| GCTCGAGTCGAGACCCTGCT+TGG | - | chr3_4:41805761-41805780 | None:intergenic | 65.0% | |
| TCAAAGAGGGGACTCCGGGC+AGG | - | chr3_4:41805950-41805969 | None:intergenic | 65.0% | |
| ! | GGCAGTTCTAGCCGTGCCGT+TGG | + | chr3_4:41806812-41806831 | Msa0501140:CDS | 65.0% |
| ! | CCGGTTGTAGGGGCGCATCA+AGG | + | chr3_4:41807326-41807345 | Msa0501140:intron | 65.0% |
| !! | GAAAGGGCCACGAGCACCGG+CGG | - | chr3_4:41803480-41803499 | None:intergenic | 70.0% |
| ! | GCCTCCTCCGCCGGTGCTCG+TGG | + | chr3_4:41803470-41803489 | Msa0501140:CDS | 80.0% |
| !!! | GCCACGAGCACCGGCGGAGG+AGG | - | chr3_4:41803474-41803493 | None:intergenic | 80.0% |
| !!! | AGGGCCACGAGCACCGGCGG+AGG | - | chr3_4:41803477-41803496 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 41803060 | 41807816 | 41803060 | ID=Msa0501140;Name=Msa0501140 |
| chr3_4 | mRNA | 41803060 | 41807816 | 41803060 | ID=Msa0501140-mRNA-1;Parent=Msa0501140;Name=Msa0501140-mRNA-1;_AED=0.38;_eAED=0.38;_QI=222|1|1|1|0.83|0.71|7|389|417 |
| chr3_4 | exon | 41803060 | 41803241 | 41803060 | ID=Msa0501140-mRNA-1:exon:8820;Parent=Msa0501140-mRNA-1 |
| chr3_4 | exon | 41803274 | 41803524 | 41803274 | ID=Msa0501140-mRNA-1:exon:8821;Parent=Msa0501140-mRNA-1 |
| chr3_4 | exon | 41804128 | 41804315 | 41804128 | ID=Msa0501140-mRNA-1:exon:8822;Parent=Msa0501140-mRNA-1 |
| chr3_4 | exon | 41804433 | 41804875 | 41804433 | ID=Msa0501140-mRNA-1:exon:8823;Parent=Msa0501140-mRNA-1 |
| chr3_4 | exon | 41804966 | 41805056 | 41804966 | ID=Msa0501140-mRNA-1:exon:8824;Parent=Msa0501140-mRNA-1 |
| chr3_4 | exon | 41806635 | 41806863 | 41806635 | ID=Msa0501140-mRNA-1:exon:8825;Parent=Msa0501140-mRNA-1 |
| chr3_4 | exon | 41807336 | 41807816 | 41807336 | ID=Msa0501140-mRNA-1:exon:8826;Parent=Msa0501140-mRNA-1 |
| chr3_4 | five_prime_UTR | 41803060 | 41803241 | 41803060 | ID=Msa0501140-mRNA-1:five_prime_utr;Parent=Msa0501140-mRNA-1 |
| chr3_4 | five_prime_UTR | 41803274 | 41803313 | 41803274 | ID=Msa0501140-mRNA-1:five_prime_utr;Parent=Msa0501140-mRNA-1 |
| chr3_4 | CDS | 41803314 | 41803524 | 41803314 | ID=Msa0501140-mRNA-1:cds;Parent=Msa0501140-mRNA-1 |
| chr3_4 | CDS | 41804128 | 41804315 | 41804128 | ID=Msa0501140-mRNA-1:cds;Parent=Msa0501140-mRNA-1 |
| chr3_4 | CDS | 41804433 | 41804875 | 41804433 | ID=Msa0501140-mRNA-1:cds;Parent=Msa0501140-mRNA-1 |
| chr3_4 | CDS | 41804966 | 41805056 | 41804966 | ID=Msa0501140-mRNA-1:cds;Parent=Msa0501140-mRNA-1 |
| chr3_4 | CDS | 41806635 | 41806863 | 41806635 | ID=Msa0501140-mRNA-1:cds;Parent=Msa0501140-mRNA-1 |
| chr3_4 | CDS | 41807336 | 41807427 | 41807336 | ID=Msa0501140-mRNA-1:cds;Parent=Msa0501140-mRNA-1 |
| chr3_4 | three_prime_UTR | 41807428 | 41807816 | 41807428 | ID=Msa0501140-mRNA-1:three_prime_utr;Parent=Msa0501140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
