Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0502730 | AES99055.1 | 82.955 | 88 | 7 | 1 | 126 | 205 | 48 | 135 | 6.61e-42 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0502730 | sp|Q9LEV3|CBSX3_ARATH | 56.322 | 87 | 29 | 2 | 128 | 205 | 1 | 87 | 4.00e-25 | 100 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0502730 | G7K5X3 | 82.955 | 88 | 7 | 1 | 126 | 205 | 48 | 135 | 3.16e-42 | 152 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0498480 | Msa0502730 | 0.835986 | 1.218825e-56 | -8.615850e-47 |
Msa0498490 | Msa0502730 | 0.877207 | 7.562169e-69 | -8.615850e-47 |
Msa0502720 | Msa0502730 | 0.938906 | 3.097924e-99 | -8.615850e-47 |
Msa0502730 | Msa0502740 | 0.880229 | 6.520903e-70 | -8.615850e-47 |
Msa0502730 | Msa0610800 | 0.823534 | 1.315468e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0502730 | MtrunA17_Chr5g0433161 | 82.558 | 86 | 7 | 1 | 128 | 205 | 1 | 86 | 5.45e-45 | 148 |
Msa0502730 | MtrunA17_Chr5g0433101 | 79.070 | 86 | 10 | 1 | 128 | 205 | 1 | 86 | 2.34e-36 | 134 |
Msa0502730 | MtrunA17_Chr8g0389231 | 90.741 | 54 | 5 | 0 | 2 | 55 | 289 | 342 | 3.54e-23 | 96.7 |
Msa0502730 | MtrunA17_Chr1g0151641 | 56.250 | 96 | 39 | 2 | 2 | 97 | 330 | 422 | 9.23e-22 | 92.4 |
Msa0502730 | MtrunA17_Chr6g0475301 | 75.926 | 54 | 13 | 0 | 2 | 55 | 283 | 336 | 2.44e-19 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0502730 | AT5G10860.1 | 56.322 | 87 | 29 | 2 | 128 | 205 | 1 | 87 | 4.07e-26 | 100 |
Msa0502730 | AT2G19600.1 | 81.481 | 54 | 10 | 0 | 2 | 55 | 293 | 346 | 3.37e-21 | 91.3 |
Msa0502730 | AT5G51710.1 | 72.222 | 54 | 15 | 0 | 2 | 55 | 278 | 331 | 1.63e-17 | 80.5 |
Msa0502730 | AT5G51710.2 | 72.222 | 54 | 15 | 0 | 2 | 55 | 278 | 331 | 1.67e-17 | 80.5 |
Msa0502730 | AT5G11800.1 | 72.549 | 51 | 14 | 0 | 2 | 52 | 301 | 351 | 2.44e-16 | 77.0 |
Find 70 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCATGTTCAGGTTATAAT+TGG | 0.164987 | 3_4:+45388139 | Msa0502730:CDS |
ATAGGTCTTGAAATTCTTAA+TGG | 0.213697 | 3_4:+45388096 | Msa0502730:intron |
CTTTGCACTGCTTCCTGTCT+TGG | 0.249824 | 3_4:+45388375 | Msa0502730:CDS |
CGCGACGGCGGCGGGTTTGA+TGG | 0.254904 | 3_4:-45390061 | None:intergenic |
TGAGGGAAGGGTGAGAAATT+AGG | 0.259401 | 3_4:-45389978 | None:intergenic |
TCGCAATCCTGCTTGCATTT+TGG | 0.275516 | 3_4:-45391184 | None:intergenic |
TGGAACATCAGGTGTTCTTC+AGG | 0.293025 | 3_4:+45388399 | Msa0502730:CDS |
GTGCTGATGGTTCCTGGCTT+TGG | 0.314433 | 3_4:+45391385 | Msa0502730:CDS |
TGTCAATGCCCTTCATGTTC+AGG | 0.345506 | 3_4:+45388129 | Msa0502730:CDS |
TTTGCACTGCTTCCTGTCTT+GGG | 0.351885 | 3_4:+45388376 | Msa0502730:CDS |
CCTGTCTTGGGTGGAACATC+AGG | 0.367509 | 3_4:+45388388 | Msa0502730:CDS |
GATGAGAGTTGGCTGAGATT+TGG | 0.370271 | 3_4:-45390020 | None:intergenic |
AATTGATTCAGTTGATGCTT+TGG | 0.371904 | 3_4:+45389178 | Msa0502730:CDS |
GTAAAGGTGCTGATGGTTCC+TGG | 0.372640 | 3_4:+45391379 | Msa0502730:CDS |
TGCGGGTTTCGCGACGGCGG+CGG | 0.393428 | 3_4:-45390070 | None:intergenic |
TTTGGATCTCGCACAGGAAT+GGG | 0.396091 | 3_4:-45390002 | None:intergenic |
ATTGATTCAGTTGATGCTTT+GGG | 0.397997 | 3_4:+45389179 | Msa0502730:CDS |
GCGGGTTTCGCGACGGCGGC+GGG | 0.410340 | 3_4:-45390069 | None:intergenic |
GAAGGGTGAGAAATTAGGTT+TGG | 0.415266 | 3_4:-45389973 | None:intergenic |
TAGTACATACCTGCAGAATC+AGG | 0.419052 | 3_4:-45388165 | None:intergenic |
AGTGGGTTTCGCGACGGAGG+TGG | 0.425903 | 3_4:-45390100 | None:intergenic |
TCAAACCGTGAAAAGGAAAC+TGG | 0.426829 | 3_4:-45391282 | None:intergenic |
TCAGACATCTTGCAAGGAAA+AGG | 0.429987 | 3_4:+45391357 | Msa0502730:intron |
ACGGAGGTGGGTGGATGTGC+GGG | 0.442949 | 3_4:-45390087 | None:intergenic |
TGTTTATGTTGCTGTCAAAT+CGG | 0.448188 | 3_4:+45391425 | Msa0502730:CDS |
CCTTGCCAATAACCTCACTA+TGG | 0.450168 | 3_4:-45389202 | None:intergenic |
AAGGGTGAGAAATTAGGTTT+GGG | 0.462215 | 3_4:-45389972 | None:intergenic |
AAAAGGAAACTGGCTGCAAA+AGG | 0.470259 | 3_4:-45391272 | None:intergenic |
CGGGTTTGATGGTTAATAAG+AGG | 0.474336 | 3_4:-45390050 | None:intergenic |
ACAGGAATGGGGTGAGGGAA+GGG | 0.479657 | 3_4:-45389990 | None:intergenic |
ATTTGGATCTCGCACAGGAA+TGG | 0.490897 | 3_4:-45390003 | None:intergenic |
CACAGGAATGGGGTGAGGGA+AGG | 0.499993 | 3_4:-45389991 | None:intergenic |
TCTCGCACAGGAATGGGGTG+AGG | 0.506915 | 3_4:-45389996 | None:intergenic |
ATCTGTGGTGCACCAAAGCC+AGG | 0.513664 | 3_4:-45391397 | None:intergenic |
AATTGGAACCCTGATTCTGC+AGG | 0.514037 | 3_4:+45388156 | Msa0502730:CDS |
ACAAACCTTGAGGTGATGAG+TGG | 0.515801 | 3_4:-45390118 | None:intergenic |
GACGGAGGTGGGTGGATGTG+CGG | 0.516023 | 3_4:-45390088 | None:intergenic |
GTGGGTTTCGCGACGGAGGT+GGG | 0.517588 | 3_4:-45390099 | None:intergenic |
TGCTACACCTGCTTGTATTG+AGG | 0.519734 | 3_4:+45391308 | Msa0502730:CDS |
GCACTGCTTCCTGTCTTGGG+TGG | 0.523718 | 3_4:+45388379 | Msa0502730:CDS |
AGCAGACTCAAACCGTGAAA+AGG | 0.527310 | 3_4:-45391289 | None:intergenic |
AAGGAAACTGGCTGCAAAAG+GGG | 0.532336 | 3_4:-45391270 | None:intergenic |
GGAACATCAGGTGTTCTTCA+GGG | 0.533805 | 3_4:+45388400 | Msa0502730:CDS |
TCTTGAAATTCTTAATGGAA+AGG | 0.540979 | 3_4:+45388101 | Msa0502730:CDS |
AAAGGAAACTGGCTGCAAAA+GGG | 0.547802 | 3_4:-45391271 | None:intergenic |
GAGGGTCGATTGATGAGAGT+TGG | 0.548870 | 3_4:-45390031 | None:intergenic |
TAGACAGCCAAAATGCAAGC+AGG | 0.551267 | 3_4:+45391177 | Msa0502730:intron |
CTGAGATTTGGATCTCGCAC+AGG | 0.551453 | 3_4:-45390008 | None:intergenic |
GGTTTCGCGACGGAGGTGGG+TGG | 0.552072 | 3_4:-45390096 | None:intergenic |
CAATTATAACCTGAACATGA+AGG | 0.553145 | 3_4:-45388138 | None:intergenic |
CCTGATGTTCCACCCAAGAC+AGG | 0.557834 | 3_4:-45388388 | None:intergenic |
CTCGCACAGGAATGGGGTGA+GGG | 0.559095 | 3_4:-45389995 | None:intergenic |
ATCTTGCAAGGAAAAGGTAA+AGG | 0.570122 | 3_4:+45391363 | Msa0502730:CDS |
GGGTTTGATGGTTAATAAGA+GGG | 0.574360 | 3_4:-45390049 | None:intergenic |
AATTATAACCTGAACATGAA+GGG | 0.577324 | 3_4:-45388137 | None:intergenic |
TGGATGTGCGGGTTTCGCGA+CGG | 0.579738 | 3_4:-45390076 | None:intergenic |
CCTGCTTGTATTGAGGAGCA+TGG | 0.583950 | 3_4:+45391315 | Msa0502730:CDS |
GGAAAAGGTAAAGGTGCTGA+TGG | 0.584293 | 3_4:+45391372 | Msa0502730:CDS |
TGATGCTTTGGGCCATAGTG+AGG | 0.588027 | 3_4:+45389190 | Msa0502730:CDS |
ACAATTTCAGACATCTTGCA+AGG | 0.588745 | 3_4:+45391351 | Msa0502730:intron |
CCATGCTCCTCAATACAAGC+AGG | 0.596883 | 3_4:-45391315 | None:intergenic |
ATGAGTGGGTTTCGCGACGG+AGG | 0.613840 | 3_4:-45390103 | None:intergenic |
AGTACATACCTGCAGAATCA+GGG | 0.614677 | 3_4:-45388164 | None:intergenic |
TTGGATCTCGCACAGGAATG+GGG | 0.626363 | 3_4:-45390001 | None:intergenic |
AACATAAACAGTGTCATCTG+TGG | 0.639874 | 3_4:-45391412 | None:intergenic |
CAAACCTTGAGGTGATGAGT+GGG | 0.641737 | 3_4:-45390117 | None:intergenic |
ATGTGCGGGTTTCGCGACGG+CGG | 0.668686 | 3_4:-45390073 | None:intergenic |
GAAACCCACTCATCACCTCA+AGG | 0.669056 | 3_4:+45390113 | Msa0502730:CDS |
GTGATGAGTGGGTTTCGCGA+CGG | 0.669184 | 3_4:-45390106 | None:intergenic |
GCAAAAGGGGATTCACCGTG+CGG | 0.705636 | 3_4:-45391257 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTATTTCTTTTTGTAAT+TGG | + | chr3_4:45388856-45388875 | Msa0502730:intron | 10.0% |
!! | AAAAATCTTTGAATTTAAAT+CGG | - | chr3_4:45389558-45389577 | None:intergenic | 10.0% |
!!! | TTAAATTAAAAGATTTTAGA+TGG | + | chr3_4:45389616-45389635 | Msa0502730:intron | 10.0% |
!!! | TAAATTAAAAGATTTTAGAT+GGG | + | chr3_4:45389617-45389636 | Msa0502730:intron | 10.0% |
!!! | TAAAATCGTTTAATTTAAAT+CGG | - | chr3_4:45389648-45389667 | None:intergenic | 10.0% |
!!! | TAAATTAAACGATTTTAAAT+CGG | + | chr3_4:45389651-45389670 | Msa0502730:intron | 10.0% |
!!! | TATAAAATTGTTTTTAAATC+GGG | - | chr3_4:45389895-45389914 | None:intergenic | 10.0% |
!! | TCTAACTAAACAAAAAAAAA+AGG | - | chr3_4:45387959-45387978 | None:intergenic | 15.0% |
!! | TAAATCGTAAGTTAATTATA+GGG | + | chr3_4:45388438-45388457 | Msa0502730:intron | 15.0% |
!! | TCTAACATCTATAAAATATT+AGG | - | chr3_4:45388550-45388569 | None:intergenic | 15.0% |
!!! | TATTTTATAGATGTTAGAAA+AGG | + | chr3_4:45388552-45388571 | Msa0502730:intron | 15.0% |
!! | TATATGAAAACAACATTATA+TGG | - | chr3_4:45389040-45389059 | None:intergenic | 15.0% |
!!! | ATTTTTTTTATACACGATTA+TGG | - | chr3_4:45389504-45389523 | None:intergenic | 15.0% |
!! | AAATATAGAGAGAATTTAAA+TGG | + | chr3_4:45389526-45389545 | Msa0502730:intron | 15.0% |
!! | AATATAGAGAGAATTTAAAT+GGG | + | chr3_4:45389527-45389546 | Msa0502730:intron | 15.0% |
!!! | AAATTAAACGATTTTAAATC+GGG | + | chr3_4:45389652-45389671 | Msa0502730:intron | 15.0% |
!!! | ATCAAATACACTTTTTAAAT+CGG | + | chr3_4:45389694-45389713 | Msa0502730:intron | 15.0% |
!! | TATTCATAATTATGTACTAA+AGG | + | chr3_4:45390657-45390676 | Msa0502730:intron | 15.0% |
!! | GATACAAAAATATGTATATT+AGG | + | chr3_4:45390821-45390840 | Msa0502730:intron | 15.0% |
!! | GATAAAATCTATTTATGTAT+TGG | + | chr3_4:45390869-45390888 | Msa0502730:intron | 15.0% |
!! | TTATAAATTTCATATTCTAG+AGG | + | chr3_4:45391042-45391061 | Msa0502730:intron | 15.0% |
!! | TATAAATTTCATATTCTAGA+GGG | + | chr3_4:45391043-45391062 | Msa0502730:intron | 15.0% |
!! | AACAGAAATATTAATTCATA+AGG | - | chr3_4:45391609-45391628 | None:intergenic | 15.0% |
!! | TTGGTATGTGATAATATTTA+TGG | + | chr3_4:45387842-45387861 | Msa0502730:intron | 20.0% |
!!! | AAGAGAAATTTTCAAAAACA+GGG | - | chr3_4:45388019-45388038 | None:intergenic | 20.0% |
!!! | AAAGAGAAATTTTCAAAAAC+AGG | - | chr3_4:45388020-45388039 | None:intergenic | 20.0% |
!!! | AATTTGCTTTTATTCTTCTT+TGG | + | chr3_4:45388070-45388089 | Msa0502730:intron | 20.0% |
!! | AATTCATTATTCGATGTTAT+TGG | + | chr3_4:45388322-45388341 | Msa0502730:intron | 20.0% |
!! | GTAAATCGTAAGTTAATTAT+AGG | + | chr3_4:45388437-45388456 | Msa0502730:intron | 20.0% |
!! | GTCAAATTACAAAATAATTC+TGG | - | chr3_4:45389389-45389408 | None:intergenic | 20.0% |
!! | AAATATCATATGATCAATGA+AGG | - | chr3_4:45389465-45389484 | None:intergenic | 20.0% |
!! | ATATAGAGAGAATTTAAATG+GGG | + | chr3_4:45389528-45389547 | Msa0502730:intron | 20.0% |
!!! | TGAATATGACTTTTTAAATC+GGG | - | chr3_4:45389742-45389761 | None:intergenic | 20.0% |
!!! | GTGAATATGACTTTTTAAAT+CGG | - | chr3_4:45389743-45389762 | None:intergenic | 20.0% |
!!! | ATTAACTCAGAGATTTTAAA+TGG | + | chr3_4:45389797-45389816 | Msa0502730:intron | 20.0% |
!!! | TTAACTCAGAGATTTTAAAT+GGG | + | chr3_4:45389798-45389817 | Msa0502730:intron | 20.0% |
!! | AGAATTTCAATTGTAAGATA+GGG | + | chr3_4:45390343-45390362 | Msa0502730:intron | 20.0% |
!!! | TTTTAGATTTTTTGTTGCTT+AGG | + | chr3_4:45390586-45390605 | Msa0502730:intron | 20.0% |
!!! | TTTAGATTTTTTGTTGCTTA+GGG | + | chr3_4:45390587-45390606 | Msa0502730:intron | 20.0% |
!! | AAATATGTATATTAGGTAAC+TGG | + | chr3_4:45390828-45390847 | Msa0502730:intron | 20.0% |
!! | ATCTATTTATGTATTGGATT+TGG | + | chr3_4:45390875-45390894 | Msa0502730:intron | 20.0% |
!! | TTTCATTAGTTCAATATTGT+TGG | + | chr3_4:45390953-45390972 | Msa0502730:intron | 20.0% |
!! | ATGAAATTTATAAGTGATTC+TGG | - | chr3_4:45391035-45391054 | None:intergenic | 20.0% |
! | CAAATTCAAAGAATTTGATG+AGG | - | chr3_4:45388056-45388075 | None:intergenic | 25.0% |
! | TTAAGAATTTCAAGACCTAT+GGG | - | chr3_4:45388096-45388115 | None:intergenic | 25.0% |
! | ATTAAGAATTTCAAGACCTA+TGG | - | chr3_4:45388097-45388116 | None:intergenic | 25.0% |
! | ATAGGTCTTGAAATTCTTAA+TGG | + | chr3_4:45388096-45388115 | Msa0502730:intron | 25.0% |
! | TCTTGAAATTCTTAATGGAA+AGG | + | chr3_4:45388101-45388120 | Msa0502730:CDS | 25.0% |
! | AATTATAACCTGAACATGAA+GGG | - | chr3_4:45388140-45388159 | None:intergenic | 25.0% |
! | ATTAACTTACGATTTACTCA+TGG | - | chr3_4:45388434-45388453 | None:intergenic | 25.0% |
! | ATTGGTTGTAGATAATGTAA+AGG | + | chr3_4:45388874-45388893 | Msa0502730:intron | 25.0% |
!!! | AATGTTGTTTTCATATAAGC+TGG | + | chr3_4:45389043-45389062 | Msa0502730:intron | 25.0% |
! | AAAAAGCTATTAACATGACA+TGG | - | chr3_4:45389310-45389329 | None:intergenic | 25.0% |
!!! | CTTGTTAGCCTTTTTTTAAA+TGG | + | chr3_4:45389582-45389601 | Msa0502730:intron | 25.0% |
!! | GGTTGATACCATTTAAAAAA+AGG | - | chr3_4:45389593-45389612 | None:intergenic | 25.0% |
!! | TACTAGTGACTTTTTAAATC+AGG | - | chr3_4:45389765-45389784 | None:intergenic | 25.0% |
!! | TCAAAATCTTTTCTTGTCAT+GGG | - | chr3_4:45389847-45389866 | None:intergenic | 25.0% |
! | ATGTGAGAAATTCGTAATTA+AGG | + | chr3_4:45390311-45390330 | Msa0502730:intron | 25.0% |
! | GAGAATTTCAATTGTAAGAT+AGG | + | chr3_4:45390342-45390361 | Msa0502730:intron | 25.0% |
!! | GTTTATTCTGTAGTTTTCAA+TGG | + | chr3_4:45390561-45390580 | Msa0502730:intron | 25.0% |
!!! | TTTGATTTTGACTTGGTAAT+TGG | + | chr3_4:45390620-45390639 | Msa0502730:intron | 25.0% |
!!! | TTGATTTTGACTTGGTAATT+GGG | + | chr3_4:45390621-45390640 | Msa0502730:intron | 25.0% |
!!! | TCTTTTCTTGTTTATATCCA+CGG | + | chr3_4:45390785-45390804 | Msa0502730:intron | 25.0% |
! | GAACTAATGAAAACATCAAA+CGG | - | chr3_4:45390945-45390964 | None:intergenic | 25.0% |
! | TGATATATGTTGCATTTAGA+AGG | + | chr3_4:45391628-45391647 | Msa0502730:intron | 25.0% |
TAGACTTCTTCTAATTGACT+TGG | + | chr3_4:45387975-45387994 | Msa0502730:intron | 30.0% | |
CAATTATAACCTGAACATGA+AGG | - | chr3_4:45388141-45388160 | None:intergenic | 30.0% | |
! | CTTCATGTTCAGGTTATAAT+TGG | + | chr3_4:45388139-45388158 | Msa0502730:CDS | 30.0% |
ATCGTAAGTTAATTATAGGG+CGG | + | chr3_4:45388441-45388460 | Msa0502730:intron | 30.0% | |
AAAATATTAGGTCAACTCGA+CGG | - | chr3_4:45388538-45388557 | None:intergenic | 30.0% | |
! | TGACTTGTAGATAACATATC+TGG | + | chr3_4:45388651-45388670 | Msa0502730:intron | 30.0% |
TGGCTAAAGATTGTTAGAAA+AGG | + | chr3_4:45388671-45388690 | Msa0502730:intron | 30.0% | |
TCTGTTTAGACTACATACAT+TGG | - | chr3_4:45388732-45388751 | None:intergenic | 30.0% | |
GAGTTTAAACTTCATCTACA+TGG | + | chr3_4:45388811-45388830 | Msa0502730:intron | 30.0% | |
AACACTCATTTAGCATACAA+GGG | - | chr3_4:45388943-45388962 | None:intergenic | 30.0% | |
AAACACTCATTTAGCATACA+AGG | - | chr3_4:45388944-45388963 | None:intergenic | 30.0% | |
! | TGTATGCTAAATGAGTGTTT+TGG | + | chr3_4:45388944-45388963 | Msa0502730:intron | 30.0% |
! | GTATGCTAAATGAGTGTTTT+GGG | + | chr3_4:45388945-45388964 | Msa0502730:intron | 30.0% |
!!! | TCATTTGTTTTGTTTCAAGC+TGG | + | chr3_4:45388979-45388998 | Msa0502730:intron | 30.0% |
ACATGTTTGCTTAATTGTAC+AGG | + | chr3_4:45389136-45389155 | Msa0502730:intron | 30.0% | |
! | AATTGATTCAGTTGATGCTT+TGG | + | chr3_4:45389178-45389197 | Msa0502730:CDS | 30.0% |
! | ATTGATTCAGTTGATGCTTT+GGG | + | chr3_4:45389179-45389198 | Msa0502730:CDS | 30.0% |
GATAAGACTTTGCAAATTCT+AGG | + | chr3_4:45389245-45389264 | Msa0502730:intron | 30.0% | |
! | AACGATTTTAAATCGGGTAA+AGG | + | chr3_4:45389658-45389677 | Msa0502730:intron | 30.0% |
! | ACGATTTTAAATCGGGTAAA+GGG | + | chr3_4:45389659-45389678 | Msa0502730:intron | 30.0% |
! | GTCAAAATCTTTTCTTGTCA+TGG | - | chr3_4:45389848-45389867 | None:intergenic | 30.0% |
CAACTAAAGAAAGATGAACA+CGG | - | chr3_4:45390290-45390309 | None:intergenic | 30.0% | |
! | GGTTTTCTTCTTTGAATTAC+TGG | + | chr3_4:45390364-45390383 | Msa0502730:intron | 30.0% |
! | TTGGAATTTTTATGTGTGTG+TGG | + | chr3_4:45390412-45390431 | Msa0502730:intron | 30.0% |
!!! | GTGAAGTTTTGATTTTGACT+TGG | + | chr3_4:45390613-45390632 | Msa0502730:intron | 30.0% |
TTCATACTATAGAAGTTCCA+TGG | + | chr3_4:45390692-45390711 | Msa0502730:intron | 30.0% | |
! | TCCATGGATTGATTTATCAT+TGG | + | chr3_4:45390708-45390727 | Msa0502730:intron | 30.0% |
! | CCATGGATTGATTTATCATT+GGG | + | chr3_4:45390709-45390728 | Msa0502730:intron | 30.0% |
TTCAATATTGTTGGCATGAA+GGG | + | chr3_4:45390962-45390981 | Msa0502730:intron | 30.0% | |
!! | TATAAGTGATTCTGGAATCA+CGG | - | chr3_4:45391027-45391046 | None:intergenic | 30.0% |
! | AATTTCATATTCTAGAGGGT+TGG | + | chr3_4:45391047-45391066 | Msa0502730:intron | 30.0% |
! | GTTGGCTTATATGTATGTAT+TGG | + | chr3_4:45391065-45391084 | Msa0502730:intron | 30.0% |
CACATATTCATGCAAGAAAA+AGG | - | chr3_4:45391110-45391129 | None:intergenic | 30.0% | |
!! | TTGCGATCATTTTTGTCAAA+CGG | + | chr3_4:45391201-45391220 | Msa0502730:CDS | 30.0% |
TGTTTATGTTGCTGTCAAAT+CGG | + | chr3_4:45391425-45391444 | Msa0502730:CDS | 30.0% | |
! | AAATCGGTAATGCATTTTGT+TGG | + | chr3_4:45391441-45391460 | Msa0502730:intron | 30.0% |
!! | TTCTTCTAATTGACTTGGTG+TGG | + | chr3_4:45387980-45387999 | Msa0502730:intron | 35.0% |
TTTATTCTTCTTTGGCCCAT+AGG | + | chr3_4:45388078-45388097 | Msa0502730:intron | 35.0% | |
!!! | CGATGTTATTGGTTTTTGTC+AGG | + | chr3_4:45388333-45388352 | Msa0502730:intron | 35.0% |
! | TTTTGTCAGGATTGTGTTGT+CGG | + | chr3_4:45388346-45388365 | Msa0502730:intron | 35.0% |
! | GCAATAGTTCTATTACAGCA+TGG | + | chr3_4:45388481-45388500 | Msa0502730:intron | 35.0% |
!!! | GTTTTGTTTCAAGCTGGATA+TGG | + | chr3_4:45388985-45389004 | Msa0502730:intron | 35.0% |
TGGCAAGGAGAAAAAATAGA+AGG | + | chr3_4:45389217-45389236 | Msa0502730:intron | 35.0% | |
CTATTAACATGACATGGACA+AGG | - | chr3_4:45389304-45389323 | None:intergenic | 35.0% | |
! | CGATTTTAAATCGGGTAAAG+GGG | + | chr3_4:45389660-45389679 | Msa0502730:intron | 35.0% |
! | GATTTTAAATCGGGTAAAGG+GGG | + | chr3_4:45389661-45389680 | Msa0502730:intron | 35.0% |
TAAATCGGCCACCTATAAAT+CGG | + | chr3_4:45389709-45389728 | Msa0502730:intron | 35.0% | |
!!! | TCATGGGTTTTTAAGTCAAG+TGG | - | chr3_4:45389831-45389850 | None:intergenic | 35.0% |
! | GTTTGGGATCTGATGAATTT+GGG | - | chr3_4:45389959-45389978 | None:intergenic | 35.0% |
AAGGGTGAGAAATTAGGTTT+GGG | - | chr3_4:45389975-45389994 | None:intergenic | 35.0% | |
! | GGGTTTGATGGTTAATAAGA+GGG | - | chr3_4:45390052-45390071 | None:intergenic | 35.0% |
TGAGTCATTCAATCGTAATG+TGG | - | chr3_4:45390247-45390266 | None:intergenic | 35.0% | |
ATTACGATTGAATGACTCAC+AGG | + | chr3_4:45390248-45390267 | Msa0502730:intron | 35.0% | |
TAAAGAAAGATGAACACGGA+AGG | - | chr3_4:45390286-45390305 | None:intergenic | 35.0% | |
TGTGAAGACTGTTGGAAATT+TGG | + | chr3_4:45390393-45390412 | Msa0502730:intron | 35.0% | |
TTCTTCTTTCATTCGCTACT+TGG | + | chr3_4:45390538-45390557 | Msa0502730:intron | 35.0% | |
TCTTCTTTCATTCGCTACTT+GGG | + | chr3_4:45390539-45390558 | Msa0502730:intron | 35.0% | |
!!! | AGATTTTTTGTTGCTTAGGG+TGG | + | chr3_4:45390590-45390609 | Msa0502730:intron | 35.0% |
!!! | GATTTTTTGTTGCTTAGGGT+GGG | + | chr3_4:45390591-45390610 | Msa0502730:intron | 35.0% |
CCCAATGATAAATCAATCCA+TGG | - | chr3_4:45390712-45390731 | None:intergenic | 35.0% | |
TATCAAGTTCTGTTTAACCG+TGG | - | chr3_4:45390805-45390824 | None:intergenic | 35.0% | |
GTATATTAGGTAACTGGTTG+TGG | + | chr3_4:45390834-45390853 | Msa0502730:intron | 35.0% | |
GTTCAATATTGTTGGCATGA+AGG | + | chr3_4:45390961-45390980 | Msa0502730:intron | 35.0% | |
!! | TGCGATCATTTTTGTCAAAC+GGG | + | chr3_4:45391202-45391221 | Msa0502730:CDS | 35.0% |
!! | ATCATTTTTGTCAAACGGGA+AGG | + | chr3_4:45391206-45391225 | Msa0502730:CDS | 35.0% |
! | TTGCAAGATGTCTGAAATTG+TGG | - | chr3_4:45391352-45391371 | None:intergenic | 35.0% |
ACAATTTCAGACATCTTGCA+AGG | + | chr3_4:45391351-45391370 | Msa0502730:intron | 35.0% | |
ATCTTGCAAGGAAAAGGTAA+AGG | + | chr3_4:45391363-45391382 | Msa0502730:CDS | 35.0% | |
AACATAAACAGTGTCATCTG+TGG | - | chr3_4:45391415-45391434 | None:intergenic | 35.0% | |
TGCAGATGACAAAACAATGT+TGG | + | chr3_4:45391530-45391549 | Msa0502730:intron | 35.0% | |
!! | TAGTTTAAAGCACTGCTGAC+TGG | + | chr3_4:45387887-45387906 | Msa0502730:intron | 40.0% |
AGTACATACCTGCAGAATCA+GGG | - | chr3_4:45388167-45388186 | None:intergenic | 40.0% | |
TAGTACATACCTGCAGAATC+AGG | - | chr3_4:45388168-45388187 | None:intergenic | 40.0% | |
GGTAGTCACACTAGAAAGAT+AGG | - | chr3_4:45388517-45388536 | None:intergenic | 40.0% | |
TAAAGGTCATGTCGTGTATG+TGG | + | chr3_4:45388891-45388910 | Msa0502730:intron | 40.0% | |
! | TAGCATACAAGGGTTTTCAG+CGG | - | chr3_4:45388933-45388952 | None:intergenic | 40.0% |
! | ATAAGCTGGATTTGTTCCAG+TGG | + | chr3_4:45389057-45389076 | Msa0502730:intron | 40.0% |
TATATGAAAACTGCAGCCAC+TGG | - | chr3_4:45389076-45389095 | None:intergenic | 40.0% | |
GTTTACATGACGAGACATTG+TGG | + | chr3_4:45389362-45389381 | Msa0502730:intron | 40.0% | |
GTGAACATCCGATTTATAGG+TGG | - | chr3_4:45389720-45389739 | None:intergenic | 40.0% | |
! | GGTTTGGGATCTGATGAATT+TGG | - | chr3_4:45389960-45389979 | None:intergenic | 40.0% |
GAAGGGTGAGAAATTAGGTT+TGG | - | chr3_4:45389976-45389995 | None:intergenic | 40.0% | |
! | CGGGTTTGATGGTTAATAAG+AGG | - | chr3_4:45390053-45390072 | None:intergenic | 40.0% |
AGAATAGAGGGTTTCAGTGA+GGG | - | chr3_4:45390167-45390186 | None:intergenic | 40.0% | |
AGGGATTTGCAGAGAATAGA+GGG | - | chr3_4:45390179-45390198 | None:intergenic | 40.0% | |
! | AGTGATTCGACAGTTGGTTT+GGG | - | chr3_4:45390210-45390229 | None:intergenic | 40.0% |
AAGTGATTCGACAGTTGGTT+TGG | - | chr3_4:45390211-45390230 | None:intergenic | 40.0% | |
ACCAACTGTCGAATCACTTT+CGG | + | chr3_4:45390212-45390231 | Msa0502730:intron | 40.0% | |
GGATTGAATGTGAAGACTGT+TGG | + | chr3_4:45390385-45390404 | Msa0502730:intron | 40.0% | |
GAAATTGTGAGAGACAGTGA+AGG | + | chr3_4:45390465-45390484 | Msa0502730:intron | 40.0% | |
! | TGAGAGACAGTGAAGGTTTT+GGG | + | chr3_4:45390472-45390491 | Msa0502730:intron | 40.0% |
GGGAATTCTGTATGATCTAG+TGG | + | chr3_4:45390729-45390748 | Msa0502730:intron | 40.0% | |
! | GAAAAAGGTGACGAGTTTTG+AGG | - | chr3_4:45391095-45391114 | None:intergenic | 40.0% |
AAAGGAAACTGGCTGCAAAA+GGG | - | chr3_4:45391274-45391293 | None:intergenic | 40.0% | |
AAAAGGAAACTGGCTGCAAA+AGG | - | chr3_4:45391275-45391294 | None:intergenic | 40.0% | |
TCAAACCGTGAAAAGGAAAC+TGG | - | chr3_4:45391285-45391304 | None:intergenic | 40.0% | |
TCAGACATCTTGCAAGGAAA+AGG | + | chr3_4:45391357-45391376 | Msa0502730:intron | 40.0% | |
CAATGTTGGAACTTGTGAGT+TGG | + | chr3_4:45391544-45391563 | Msa0502730:intron | 40.0% | |
ATGGCTTCTCTATTGTGCTC+TGG | + | chr3_4:45387861-45387880 | Msa0502730:intron | 45.0% | |
!! | TTTAAAGCACTGCTGACTGG+TGG | + | chr3_4:45387890-45387909 | Msa0502730:intron | 45.0% |
TGTCAATGCCCTTCATGTTC+AGG | + | chr3_4:45388129-45388148 | Msa0502730:CDS | 45.0% | |
AATTGGAACCCTGATTCTGC+AGG | + | chr3_4:45388156-45388175 | Msa0502730:CDS | 45.0% | |
CTGCAGTTGTGTAGAAAGAG+TGG | + | chr3_4:45388238-45388257 | Msa0502730:intron | 45.0% | |
TTTGCACTGCTTCCTGTCTT+GGG | + | chr3_4:45388376-45388395 | Msa0502730:CDS | 45.0% | |
TGGAACATCAGGTGTTCTTC+AGG | + | chr3_4:45388399-45388418 | Msa0502730:CDS | 45.0% | |
GGAACATCAGGTGTTCTTCA+GGG | + | chr3_4:45388400-45388419 | Msa0502730:CDS | 45.0% | |
TCGTGTATGTGGTGGTATCT+AGG | + | chr3_4:45388902-45388921 | Msa0502730:intron | 45.0% | |
TTGGGCCATAGTGAGGTTAT+TGG | + | chr3_4:45389197-45389216 | Msa0502730:intron | 45.0% | |
CCTTGCCAATAACCTCACTA+TGG | - | chr3_4:45389205-45389224 | None:intergenic | 45.0% | |
CCATAGTGAGGTTATTGGCA+AGG | + | chr3_4:45389202-45389221 | Msa0502730:intron | 45.0% | |
CGGGTGAACATCCGATTTAT+AGG | - | chr3_4:45389723-45389742 | None:intergenic | 45.0% | |
TGAGGGAAGGGTGAGAAATT+AGG | - | chr3_4:45389981-45390000 | None:intergenic | 45.0% | |
TTTGGATCTCGCACAGGAAT+GGG | - | chr3_4:45390005-45390024 | None:intergenic | 45.0% | |
ATTTGGATCTCGCACAGGAA+TGG | - | chr3_4:45390006-45390025 | None:intergenic | 45.0% | |
GATGAGAGTTGGCTGAGATT+TGG | - | chr3_4:45390023-45390042 | None:intergenic | 45.0% | |
CAAACCTTGAGGTGATGAGT+GGG | - | chr3_4:45390120-45390139 | None:intergenic | 45.0% | |
ACAAACCTTGAGGTGATGAG+TGG | - | chr3_4:45390121-45390140 | None:intergenic | 45.0% | |
GAGAATAGAGGGTTTCAGTG+AGG | - | chr3_4:45390168-45390187 | None:intergenic | 45.0% | |
GAGGGATTTGCAGAGAATAG+AGG | - | chr3_4:45390180-45390199 | None:intergenic | 45.0% | |
!! | TCGACAGTTGGTTTGGGTAA+CGG | - | chr3_4:45390204-45390223 | None:intergenic | 45.0% |
ACCGAAAGTGATTCGACAGT+TGG | - | chr3_4:45390216-45390235 | None:intergenic | 45.0% | |
! | GTGAGAGACAGTGAAGGTTT+TGG | + | chr3_4:45390471-45390490 | Msa0502730:intron | 45.0% |
! | GAGAGACAGTGAAGGTTTTG+GGG | + | chr3_4:45390473-45390492 | Msa0502730:intron | 45.0% |
TAGACAGCCAAAATGCAAGC+AGG | + | chr3_4:45391177-45391196 | Msa0502730:intron | 45.0% | |
! | TCGCAATCCTGCTTGCATTT+TGG | - | chr3_4:45391187-45391206 | None:intergenic | 45.0% |
AAGGAAACTGGCTGCAAAAG+GGG | - | chr3_4:45391273-45391292 | None:intergenic | 45.0% | |
! | TGCAGCCAGTTTCCTTTTCA+CGG | + | chr3_4:45391277-45391296 | Msa0502730:CDS | 45.0% |
AGCAGACTCAAACCGTGAAA+AGG | - | chr3_4:45391292-45391311 | None:intergenic | 45.0% | |
TGCTACACCTGCTTGTATTG+AGG | + | chr3_4:45391308-45391327 | Msa0502730:CDS | 45.0% | |
!! | GGAAAAGGTAAAGGTGCTGA+TGG | + | chr3_4:45391372-45391391 | Msa0502730:CDS | 45.0% |
!!! | TAAAATCTTTTAATTTAAAT+CGG | - | chr3_4:45389614-45389633 | None:intergenic | 5.0% |
!!! | ATATAAAATTGTTTTTAAAT+CGG | - | chr3_4:45389896-45389915 | None:intergenic | 5.0% |
GCTGACTGGTGGTATGTGAA+TGG | + | chr3_4:45387901-45387920 | Msa0502730:intron | 50.0% | |
CTTTGCACTGCTTCCTGTCT+TGG | + | chr3_4:45388375-45388394 | Msa0502730:CDS | 50.0% | |
AGGTCATGTCGTGTATGTGG+TGG | + | chr3_4:45388894-45388913 | Msa0502730:intron | 50.0% | |
! | TGATGCTTTGGGCCATAGTG+AGG | + | chr3_4:45389190-45389209 | Msa0502730:CDS | 50.0% |
TTGGATCTCGCACAGGAATG+GGG | - | chr3_4:45390004-45390023 | None:intergenic | 50.0% | |
CTGAGATTTGGATCTCGCAC+AGG | - | chr3_4:45390011-45390030 | None:intergenic | 50.0% | |
GAGGGTCGATTGATGAGAGT+TGG | - | chr3_4:45390034-45390053 | None:intergenic | 50.0% | |
GAAACCCACTCATCACCTCA+AGG | + | chr3_4:45390113-45390132 | Msa0502730:CDS | 50.0% | |
GAGGTTTCGCACAAACCTTG+AGG | - | chr3_4:45390131-45390150 | None:intergenic | 50.0% | |
!! | GTTGGTTTGGGTAACGGTGA+GGG | - | chr3_4:45390198-45390217 | None:intergenic | 50.0% |
!! | AGTTGGTTTGGGTAACGGTG+AGG | - | chr3_4:45390199-45390218 | None:intergenic | 50.0% |
! | TGTTTTGCAACGAGTCCGCA+CGG | + | chr3_4:45391242-45391261 | Msa0502730:CDS | 50.0% |
CCATGCTCCTCAATACAAGC+AGG | - | chr3_4:45391318-45391337 | None:intergenic | 50.0% | |
CCTGCTTGTATTGAGGAGCA+TGG | + | chr3_4:45391315-45391334 | Msa0502730:CDS | 50.0% | |
!! | GTAAAGGTGCTGATGGTTCC+TGG | + | chr3_4:45391379-45391398 | Msa0502730:CDS | 50.0% |
CCTGATGTTCCACCCAAGAC+AGG | - | chr3_4:45388391-45388410 | None:intergenic | 55.0% | |
CCTGTCTTGGGTGGAACATC+AGG | + | chr3_4:45388388-45388407 | Msa0502730:CDS | 55.0% | |
ACAGGAATGGGGTGAGGGAA+GGG | - | chr3_4:45389993-45390012 | None:intergenic | 55.0% | |
! | GTGATGAGTGGGTTTCGCGA+CGG | - | chr3_4:45390109-45390128 | None:intergenic | 55.0% |
TTCAGTGAGGGTGAGGGCTT+TGG | - | chr3_4:45390155-45390174 | None:intergenic | 55.0% | |
GAGGGTTTCAGTGAGGGTGA+GGG | - | chr3_4:45390161-45390180 | None:intergenic | 55.0% | |
AGAGGGTTTCAGTGAGGGTG+AGG | - | chr3_4:45390162-45390181 | None:intergenic | 55.0% | |
GCAAAAGGGGATTCACCGTG+CGG | - | chr3_4:45391260-45391279 | None:intergenic | 55.0% | |
! | GTGCTGATGGTTCCTGGCTT+TGG | + | chr3_4:45391385-45391404 | Msa0502730:CDS | 55.0% |
ATCTGTGGTGCACCAAAGCC+AGG | - | chr3_4:45391400-45391419 | None:intergenic | 55.0% | |
GCACTGCTTCCTGTCTTGGG+TGG | + | chr3_4:45388379-45388398 | Msa0502730:CDS | 60.0% | |
CACAGGAATGGGGTGAGGGA+AGG | - | chr3_4:45389994-45390013 | None:intergenic | 60.0% | |
CTCGCACAGGAATGGGGTGA+GGG | - | chr3_4:45389998-45390017 | None:intergenic | 60.0% | |
TCTCGCACAGGAATGGGGTG+AGG | - | chr3_4:45389999-45390018 | None:intergenic | 60.0% | |
TGGATGTGCGGGTTTCGCGA+CGG | - | chr3_4:45390079-45390098 | None:intergenic | 60.0% | |
! | ATGAGTGGGTTTCGCGACGG+AGG | - | chr3_4:45390106-45390125 | None:intergenic | 60.0% |
! | TGAGGGTGAGGGCTTTGGTG+AGG | - | chr3_4:45390150-45390169 | None:intergenic | 60.0% |
ATGTGCGGGTTTCGCGACGG+CGG | - | chr3_4:45390076-45390095 | None:intergenic | 65.0% | |
ACGGAGGTGGGTGGATGTGC+GGG | - | chr3_4:45390090-45390109 | None:intergenic | 65.0% | |
GACGGAGGTGGGTGGATGTG+CGG | - | chr3_4:45390091-45390110 | None:intergenic | 65.0% | |
GTGGGTTTCGCGACGGAGGT+GGG | - | chr3_4:45390102-45390121 | None:intergenic | 65.0% | |
! | AGTGGGTTTCGCGACGGAGG+TGG | - | chr3_4:45390103-45390122 | None:intergenic | 65.0% |
GGTTTCGCGACGGAGGTGGG+TGG | - | chr3_4:45390099-45390118 | None:intergenic | 70.0% | |
! | CGCGACGGCGGCGGGTTTGA+TGG | - | chr3_4:45390064-45390083 | None:intergenic | 75.0% |
TGCGGGTTTCGCGACGGCGG+CGG | - | chr3_4:45390073-45390092 | None:intergenic | 75.0% | |
! | GCGGGTTTCGCGACGGCGGC+GGG | - | chr3_4:45390072-45390091 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 45387839 | 45391652 | 45387839 | ID=Msa0502730;Name=Msa0502730 |
chr3_4 | mRNA | 45387839 | 45391652 | 45387839 | ID=Msa0502730-mRNA-1;Parent=Msa0502730;Name=Msa0502730-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0.14|0|0.5|0.28|0.37|8|0|207 |
chr3_4 | exon | 45387839 | 45387844 | 45387839 | ID=Msa0502730-mRNA-1:exon:9643;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45388100 | 45388177 | 45388100 | ID=Msa0502730-mRNA-1:exon:9644;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45388355 | 45388423 | 45388355 | ID=Msa0502730-mRNA-1:exon:9645;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45389158 | 45389211 | 45389158 | ID=Msa0502730-mRNA-1:exon:9646;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45389970 | 45390134 | 45389970 | ID=Msa0502730-mRNA-1:exon:9647;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45391180 | 45391336 | 45391180 | ID=Msa0502730-mRNA-1:exon:9648;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45391361 | 45391446 | 45391361 | ID=Msa0502730-mRNA-1:exon:9649;Parent=Msa0502730-mRNA-1 |
chr3_4 | exon | 45391647 | 45391652 | 45391647 | ID=Msa0502730-mRNA-1:exon:9650;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45387839 | 45387844 | 45387839 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45388100 | 45388177 | 45388100 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45388355 | 45388423 | 45388355 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45389158 | 45389211 | 45389158 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45389970 | 45390134 | 45389970 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45391180 | 45391336 | 45391180 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45391361 | 45391446 | 45391361 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
chr3_4 | CDS | 45391647 | 45391652 | 45391647 | ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1 |
Gene Sequence |
Protein sequence |