AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0502730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0502730 MtrunA17_Chr5g0433161 82.558 86 7 1 128 205 1 86 5.45e-45 148
Msa0502730 MtrunA17_Chr5g0433101 79.070 86 10 1 128 205 1 86 2.34e-36 134
Msa0502730 MtrunA17_Chr8g0389231 90.741 54 5 0 2 55 289 342 3.54e-23 96.7
Msa0502730 MtrunA17_Chr1g0151641 56.250 96 39 2 2 97 330 422 9.23e-22 92.4
Msa0502730 MtrunA17_Chr6g0475301 75.926 54 13 0 2 55 283 336 2.44e-19 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0502730 AT5G10860.1 56.322 87 29 2 128 205 1 87 4.07e-26 100
Msa0502730 AT2G19600.1 81.481 54 10 0 2 55 293 346 3.37e-21 91.3
Msa0502730 AT5G51710.1 72.222 54 15 0 2 55 278 331 1.63e-17 80.5
Msa0502730 AT5G51710.2 72.222 54 15 0 2 55 278 331 1.67e-17 80.5
Msa0502730 AT5G11800.1 72.549 51 14 0 2 52 301 351 2.44e-16 77.0

Find 70 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATGTTCAGGTTATAAT+TGG 0.164987 3_4:+45388139 Msa0502730:CDS
ATAGGTCTTGAAATTCTTAA+TGG 0.213697 3_4:+45388096 Msa0502730:intron
CTTTGCACTGCTTCCTGTCT+TGG 0.249824 3_4:+45388375 Msa0502730:CDS
CGCGACGGCGGCGGGTTTGA+TGG 0.254904 3_4:-45390061 None:intergenic
TGAGGGAAGGGTGAGAAATT+AGG 0.259401 3_4:-45389978 None:intergenic
TCGCAATCCTGCTTGCATTT+TGG 0.275516 3_4:-45391184 None:intergenic
TGGAACATCAGGTGTTCTTC+AGG 0.293025 3_4:+45388399 Msa0502730:CDS
GTGCTGATGGTTCCTGGCTT+TGG 0.314433 3_4:+45391385 Msa0502730:CDS
TGTCAATGCCCTTCATGTTC+AGG 0.345506 3_4:+45388129 Msa0502730:CDS
TTTGCACTGCTTCCTGTCTT+GGG 0.351885 3_4:+45388376 Msa0502730:CDS
CCTGTCTTGGGTGGAACATC+AGG 0.367509 3_4:+45388388 Msa0502730:CDS
GATGAGAGTTGGCTGAGATT+TGG 0.370271 3_4:-45390020 None:intergenic
AATTGATTCAGTTGATGCTT+TGG 0.371904 3_4:+45389178 Msa0502730:CDS
GTAAAGGTGCTGATGGTTCC+TGG 0.372640 3_4:+45391379 Msa0502730:CDS
TGCGGGTTTCGCGACGGCGG+CGG 0.393428 3_4:-45390070 None:intergenic
TTTGGATCTCGCACAGGAAT+GGG 0.396091 3_4:-45390002 None:intergenic
ATTGATTCAGTTGATGCTTT+GGG 0.397997 3_4:+45389179 Msa0502730:CDS
GCGGGTTTCGCGACGGCGGC+GGG 0.410340 3_4:-45390069 None:intergenic
GAAGGGTGAGAAATTAGGTT+TGG 0.415266 3_4:-45389973 None:intergenic
TAGTACATACCTGCAGAATC+AGG 0.419052 3_4:-45388165 None:intergenic
AGTGGGTTTCGCGACGGAGG+TGG 0.425903 3_4:-45390100 None:intergenic
TCAAACCGTGAAAAGGAAAC+TGG 0.426829 3_4:-45391282 None:intergenic
TCAGACATCTTGCAAGGAAA+AGG 0.429987 3_4:+45391357 Msa0502730:intron
ACGGAGGTGGGTGGATGTGC+GGG 0.442949 3_4:-45390087 None:intergenic
TGTTTATGTTGCTGTCAAAT+CGG 0.448188 3_4:+45391425 Msa0502730:CDS
CCTTGCCAATAACCTCACTA+TGG 0.450168 3_4:-45389202 None:intergenic
AAGGGTGAGAAATTAGGTTT+GGG 0.462215 3_4:-45389972 None:intergenic
AAAAGGAAACTGGCTGCAAA+AGG 0.470259 3_4:-45391272 None:intergenic
CGGGTTTGATGGTTAATAAG+AGG 0.474336 3_4:-45390050 None:intergenic
ACAGGAATGGGGTGAGGGAA+GGG 0.479657 3_4:-45389990 None:intergenic
ATTTGGATCTCGCACAGGAA+TGG 0.490897 3_4:-45390003 None:intergenic
CACAGGAATGGGGTGAGGGA+AGG 0.499993 3_4:-45389991 None:intergenic
TCTCGCACAGGAATGGGGTG+AGG 0.506915 3_4:-45389996 None:intergenic
ATCTGTGGTGCACCAAAGCC+AGG 0.513664 3_4:-45391397 None:intergenic
AATTGGAACCCTGATTCTGC+AGG 0.514037 3_4:+45388156 Msa0502730:CDS
ACAAACCTTGAGGTGATGAG+TGG 0.515801 3_4:-45390118 None:intergenic
GACGGAGGTGGGTGGATGTG+CGG 0.516023 3_4:-45390088 None:intergenic
GTGGGTTTCGCGACGGAGGT+GGG 0.517588 3_4:-45390099 None:intergenic
TGCTACACCTGCTTGTATTG+AGG 0.519734 3_4:+45391308 Msa0502730:CDS
GCACTGCTTCCTGTCTTGGG+TGG 0.523718 3_4:+45388379 Msa0502730:CDS
AGCAGACTCAAACCGTGAAA+AGG 0.527310 3_4:-45391289 None:intergenic
AAGGAAACTGGCTGCAAAAG+GGG 0.532336 3_4:-45391270 None:intergenic
GGAACATCAGGTGTTCTTCA+GGG 0.533805 3_4:+45388400 Msa0502730:CDS
TCTTGAAATTCTTAATGGAA+AGG 0.540979 3_4:+45388101 Msa0502730:CDS
AAAGGAAACTGGCTGCAAAA+GGG 0.547802 3_4:-45391271 None:intergenic
GAGGGTCGATTGATGAGAGT+TGG 0.548870 3_4:-45390031 None:intergenic
TAGACAGCCAAAATGCAAGC+AGG 0.551267 3_4:+45391177 Msa0502730:intron
CTGAGATTTGGATCTCGCAC+AGG 0.551453 3_4:-45390008 None:intergenic
GGTTTCGCGACGGAGGTGGG+TGG 0.552072 3_4:-45390096 None:intergenic
CAATTATAACCTGAACATGA+AGG 0.553145 3_4:-45388138 None:intergenic
CCTGATGTTCCACCCAAGAC+AGG 0.557834 3_4:-45388388 None:intergenic
CTCGCACAGGAATGGGGTGA+GGG 0.559095 3_4:-45389995 None:intergenic
ATCTTGCAAGGAAAAGGTAA+AGG 0.570122 3_4:+45391363 Msa0502730:CDS
GGGTTTGATGGTTAATAAGA+GGG 0.574360 3_4:-45390049 None:intergenic
AATTATAACCTGAACATGAA+GGG 0.577324 3_4:-45388137 None:intergenic
TGGATGTGCGGGTTTCGCGA+CGG 0.579738 3_4:-45390076 None:intergenic
CCTGCTTGTATTGAGGAGCA+TGG 0.583950 3_4:+45391315 Msa0502730:CDS
GGAAAAGGTAAAGGTGCTGA+TGG 0.584293 3_4:+45391372 Msa0502730:CDS
TGATGCTTTGGGCCATAGTG+AGG 0.588027 3_4:+45389190 Msa0502730:CDS
ACAATTTCAGACATCTTGCA+AGG 0.588745 3_4:+45391351 Msa0502730:intron
CCATGCTCCTCAATACAAGC+AGG 0.596883 3_4:-45391315 None:intergenic
ATGAGTGGGTTTCGCGACGG+AGG 0.613840 3_4:-45390103 None:intergenic
AGTACATACCTGCAGAATCA+GGG 0.614677 3_4:-45388164 None:intergenic
TTGGATCTCGCACAGGAATG+GGG 0.626363 3_4:-45390001 None:intergenic
AACATAAACAGTGTCATCTG+TGG 0.639874 3_4:-45391412 None:intergenic
CAAACCTTGAGGTGATGAGT+GGG 0.641737 3_4:-45390117 None:intergenic
ATGTGCGGGTTTCGCGACGG+CGG 0.668686 3_4:-45390073 None:intergenic
GAAACCCACTCATCACCTCA+AGG 0.669056 3_4:+45390113 Msa0502730:CDS
GTGATGAGTGGGTTTCGCGA+CGG 0.669184 3_4:-45390106 None:intergenic
GCAAAAGGGGATTCACCGTG+CGG 0.705636 3_4:-45391257 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTCTTTTTGTAAT+TGG + chr3_4:45388856-45388875 Msa0502730:intron 10.0%
!! AAAAATCTTTGAATTTAAAT+CGG - chr3_4:45389558-45389577 None:intergenic 10.0%
!!! TTAAATTAAAAGATTTTAGA+TGG + chr3_4:45389616-45389635 Msa0502730:intron 10.0%
!!! TAAATTAAAAGATTTTAGAT+GGG + chr3_4:45389617-45389636 Msa0502730:intron 10.0%
!!! TAAAATCGTTTAATTTAAAT+CGG - chr3_4:45389648-45389667 None:intergenic 10.0%
!!! TAAATTAAACGATTTTAAAT+CGG + chr3_4:45389651-45389670 Msa0502730:intron 10.0%
!!! TATAAAATTGTTTTTAAATC+GGG - chr3_4:45389895-45389914 None:intergenic 10.0%
!! TCTAACTAAACAAAAAAAAA+AGG - chr3_4:45387959-45387978 None:intergenic 15.0%
!! TAAATCGTAAGTTAATTATA+GGG + chr3_4:45388438-45388457 Msa0502730:intron 15.0%
!! TCTAACATCTATAAAATATT+AGG - chr3_4:45388550-45388569 None:intergenic 15.0%
!!! TATTTTATAGATGTTAGAAA+AGG + chr3_4:45388552-45388571 Msa0502730:intron 15.0%
!! TATATGAAAACAACATTATA+TGG - chr3_4:45389040-45389059 None:intergenic 15.0%
!!! ATTTTTTTTATACACGATTA+TGG - chr3_4:45389504-45389523 None:intergenic 15.0%
!! AAATATAGAGAGAATTTAAA+TGG + chr3_4:45389526-45389545 Msa0502730:intron 15.0%
!! AATATAGAGAGAATTTAAAT+GGG + chr3_4:45389527-45389546 Msa0502730:intron 15.0%
!!! AAATTAAACGATTTTAAATC+GGG + chr3_4:45389652-45389671 Msa0502730:intron 15.0%
!!! ATCAAATACACTTTTTAAAT+CGG + chr3_4:45389694-45389713 Msa0502730:intron 15.0%
!! TATTCATAATTATGTACTAA+AGG + chr3_4:45390657-45390676 Msa0502730:intron 15.0%
!! GATACAAAAATATGTATATT+AGG + chr3_4:45390821-45390840 Msa0502730:intron 15.0%
!! GATAAAATCTATTTATGTAT+TGG + chr3_4:45390869-45390888 Msa0502730:intron 15.0%
!! TTATAAATTTCATATTCTAG+AGG + chr3_4:45391042-45391061 Msa0502730:intron 15.0%
!! TATAAATTTCATATTCTAGA+GGG + chr3_4:45391043-45391062 Msa0502730:intron 15.0%
!! AACAGAAATATTAATTCATA+AGG - chr3_4:45391609-45391628 None:intergenic 15.0%
!! TTGGTATGTGATAATATTTA+TGG + chr3_4:45387842-45387861 Msa0502730:intron 20.0%
!!! AAGAGAAATTTTCAAAAACA+GGG - chr3_4:45388019-45388038 None:intergenic 20.0%
!!! AAAGAGAAATTTTCAAAAAC+AGG - chr3_4:45388020-45388039 None:intergenic 20.0%
!!! AATTTGCTTTTATTCTTCTT+TGG + chr3_4:45388070-45388089 Msa0502730:intron 20.0%
!! AATTCATTATTCGATGTTAT+TGG + chr3_4:45388322-45388341 Msa0502730:intron 20.0%
!! GTAAATCGTAAGTTAATTAT+AGG + chr3_4:45388437-45388456 Msa0502730:intron 20.0%
!! GTCAAATTACAAAATAATTC+TGG - chr3_4:45389389-45389408 None:intergenic 20.0%
!! AAATATCATATGATCAATGA+AGG - chr3_4:45389465-45389484 None:intergenic 20.0%
!! ATATAGAGAGAATTTAAATG+GGG + chr3_4:45389528-45389547 Msa0502730:intron 20.0%
!!! TGAATATGACTTTTTAAATC+GGG - chr3_4:45389742-45389761 None:intergenic 20.0%
!!! GTGAATATGACTTTTTAAAT+CGG - chr3_4:45389743-45389762 None:intergenic 20.0%
!!! ATTAACTCAGAGATTTTAAA+TGG + chr3_4:45389797-45389816 Msa0502730:intron 20.0%
!!! TTAACTCAGAGATTTTAAAT+GGG + chr3_4:45389798-45389817 Msa0502730:intron 20.0%
!! AGAATTTCAATTGTAAGATA+GGG + chr3_4:45390343-45390362 Msa0502730:intron 20.0%
!!! TTTTAGATTTTTTGTTGCTT+AGG + chr3_4:45390586-45390605 Msa0502730:intron 20.0%
!!! TTTAGATTTTTTGTTGCTTA+GGG + chr3_4:45390587-45390606 Msa0502730:intron 20.0%
!! AAATATGTATATTAGGTAAC+TGG + chr3_4:45390828-45390847 Msa0502730:intron 20.0%
!! ATCTATTTATGTATTGGATT+TGG + chr3_4:45390875-45390894 Msa0502730:intron 20.0%
!! TTTCATTAGTTCAATATTGT+TGG + chr3_4:45390953-45390972 Msa0502730:intron 20.0%
!! ATGAAATTTATAAGTGATTC+TGG - chr3_4:45391035-45391054 None:intergenic 20.0%
! CAAATTCAAAGAATTTGATG+AGG - chr3_4:45388056-45388075 None:intergenic 25.0%
! TTAAGAATTTCAAGACCTAT+GGG - chr3_4:45388096-45388115 None:intergenic 25.0%
! ATTAAGAATTTCAAGACCTA+TGG - chr3_4:45388097-45388116 None:intergenic 25.0%
! ATAGGTCTTGAAATTCTTAA+TGG + chr3_4:45388096-45388115 Msa0502730:intron 25.0%
! TCTTGAAATTCTTAATGGAA+AGG + chr3_4:45388101-45388120 Msa0502730:CDS 25.0%
! AATTATAACCTGAACATGAA+GGG - chr3_4:45388140-45388159 None:intergenic 25.0%
! ATTAACTTACGATTTACTCA+TGG - chr3_4:45388434-45388453 None:intergenic 25.0%
! ATTGGTTGTAGATAATGTAA+AGG + chr3_4:45388874-45388893 Msa0502730:intron 25.0%
!!! AATGTTGTTTTCATATAAGC+TGG + chr3_4:45389043-45389062 Msa0502730:intron 25.0%
! AAAAAGCTATTAACATGACA+TGG - chr3_4:45389310-45389329 None:intergenic 25.0%
!!! CTTGTTAGCCTTTTTTTAAA+TGG + chr3_4:45389582-45389601 Msa0502730:intron 25.0%
!! GGTTGATACCATTTAAAAAA+AGG - chr3_4:45389593-45389612 None:intergenic 25.0%
!! TACTAGTGACTTTTTAAATC+AGG - chr3_4:45389765-45389784 None:intergenic 25.0%
!! TCAAAATCTTTTCTTGTCAT+GGG - chr3_4:45389847-45389866 None:intergenic 25.0%
! ATGTGAGAAATTCGTAATTA+AGG + chr3_4:45390311-45390330 Msa0502730:intron 25.0%
! GAGAATTTCAATTGTAAGAT+AGG + chr3_4:45390342-45390361 Msa0502730:intron 25.0%
!! GTTTATTCTGTAGTTTTCAA+TGG + chr3_4:45390561-45390580 Msa0502730:intron 25.0%
!!! TTTGATTTTGACTTGGTAAT+TGG + chr3_4:45390620-45390639 Msa0502730:intron 25.0%
!!! TTGATTTTGACTTGGTAATT+GGG + chr3_4:45390621-45390640 Msa0502730:intron 25.0%
!!! TCTTTTCTTGTTTATATCCA+CGG + chr3_4:45390785-45390804 Msa0502730:intron 25.0%
! GAACTAATGAAAACATCAAA+CGG - chr3_4:45390945-45390964 None:intergenic 25.0%
! TGATATATGTTGCATTTAGA+AGG + chr3_4:45391628-45391647 Msa0502730:intron 25.0%
TAGACTTCTTCTAATTGACT+TGG + chr3_4:45387975-45387994 Msa0502730:intron 30.0%
CAATTATAACCTGAACATGA+AGG - chr3_4:45388141-45388160 None:intergenic 30.0%
! CTTCATGTTCAGGTTATAAT+TGG + chr3_4:45388139-45388158 Msa0502730:CDS 30.0%
ATCGTAAGTTAATTATAGGG+CGG + chr3_4:45388441-45388460 Msa0502730:intron 30.0%
AAAATATTAGGTCAACTCGA+CGG - chr3_4:45388538-45388557 None:intergenic 30.0%
! TGACTTGTAGATAACATATC+TGG + chr3_4:45388651-45388670 Msa0502730:intron 30.0%
TGGCTAAAGATTGTTAGAAA+AGG + chr3_4:45388671-45388690 Msa0502730:intron 30.0%
TCTGTTTAGACTACATACAT+TGG - chr3_4:45388732-45388751 None:intergenic 30.0%
GAGTTTAAACTTCATCTACA+TGG + chr3_4:45388811-45388830 Msa0502730:intron 30.0%
AACACTCATTTAGCATACAA+GGG - chr3_4:45388943-45388962 None:intergenic 30.0%
AAACACTCATTTAGCATACA+AGG - chr3_4:45388944-45388963 None:intergenic 30.0%
! TGTATGCTAAATGAGTGTTT+TGG + chr3_4:45388944-45388963 Msa0502730:intron 30.0%
! GTATGCTAAATGAGTGTTTT+GGG + chr3_4:45388945-45388964 Msa0502730:intron 30.0%
!!! TCATTTGTTTTGTTTCAAGC+TGG + chr3_4:45388979-45388998 Msa0502730:intron 30.0%
ACATGTTTGCTTAATTGTAC+AGG + chr3_4:45389136-45389155 Msa0502730:intron 30.0%
! AATTGATTCAGTTGATGCTT+TGG + chr3_4:45389178-45389197 Msa0502730:CDS 30.0%
! ATTGATTCAGTTGATGCTTT+GGG + chr3_4:45389179-45389198 Msa0502730:CDS 30.0%
GATAAGACTTTGCAAATTCT+AGG + chr3_4:45389245-45389264 Msa0502730:intron 30.0%
! AACGATTTTAAATCGGGTAA+AGG + chr3_4:45389658-45389677 Msa0502730:intron 30.0%
! ACGATTTTAAATCGGGTAAA+GGG + chr3_4:45389659-45389678 Msa0502730:intron 30.0%
! GTCAAAATCTTTTCTTGTCA+TGG - chr3_4:45389848-45389867 None:intergenic 30.0%
CAACTAAAGAAAGATGAACA+CGG - chr3_4:45390290-45390309 None:intergenic 30.0%
! GGTTTTCTTCTTTGAATTAC+TGG + chr3_4:45390364-45390383 Msa0502730:intron 30.0%
! TTGGAATTTTTATGTGTGTG+TGG + chr3_4:45390412-45390431 Msa0502730:intron 30.0%
!!! GTGAAGTTTTGATTTTGACT+TGG + chr3_4:45390613-45390632 Msa0502730:intron 30.0%
TTCATACTATAGAAGTTCCA+TGG + chr3_4:45390692-45390711 Msa0502730:intron 30.0%
! TCCATGGATTGATTTATCAT+TGG + chr3_4:45390708-45390727 Msa0502730:intron 30.0%
! CCATGGATTGATTTATCATT+GGG + chr3_4:45390709-45390728 Msa0502730:intron 30.0%
TTCAATATTGTTGGCATGAA+GGG + chr3_4:45390962-45390981 Msa0502730:intron 30.0%
!! TATAAGTGATTCTGGAATCA+CGG - chr3_4:45391027-45391046 None:intergenic 30.0%
! AATTTCATATTCTAGAGGGT+TGG + chr3_4:45391047-45391066 Msa0502730:intron 30.0%
! GTTGGCTTATATGTATGTAT+TGG + chr3_4:45391065-45391084 Msa0502730:intron 30.0%
CACATATTCATGCAAGAAAA+AGG - chr3_4:45391110-45391129 None:intergenic 30.0%
!! TTGCGATCATTTTTGTCAAA+CGG + chr3_4:45391201-45391220 Msa0502730:CDS 30.0%
TGTTTATGTTGCTGTCAAAT+CGG + chr3_4:45391425-45391444 Msa0502730:CDS 30.0%
! AAATCGGTAATGCATTTTGT+TGG + chr3_4:45391441-45391460 Msa0502730:intron 30.0%
!! TTCTTCTAATTGACTTGGTG+TGG + chr3_4:45387980-45387999 Msa0502730:intron 35.0%
TTTATTCTTCTTTGGCCCAT+AGG + chr3_4:45388078-45388097 Msa0502730:intron 35.0%
!!! CGATGTTATTGGTTTTTGTC+AGG + chr3_4:45388333-45388352 Msa0502730:intron 35.0%
! TTTTGTCAGGATTGTGTTGT+CGG + chr3_4:45388346-45388365 Msa0502730:intron 35.0%
! GCAATAGTTCTATTACAGCA+TGG + chr3_4:45388481-45388500 Msa0502730:intron 35.0%
!!! GTTTTGTTTCAAGCTGGATA+TGG + chr3_4:45388985-45389004 Msa0502730:intron 35.0%
TGGCAAGGAGAAAAAATAGA+AGG + chr3_4:45389217-45389236 Msa0502730:intron 35.0%
CTATTAACATGACATGGACA+AGG - chr3_4:45389304-45389323 None:intergenic 35.0%
! CGATTTTAAATCGGGTAAAG+GGG + chr3_4:45389660-45389679 Msa0502730:intron 35.0%
! GATTTTAAATCGGGTAAAGG+GGG + chr3_4:45389661-45389680 Msa0502730:intron 35.0%
TAAATCGGCCACCTATAAAT+CGG + chr3_4:45389709-45389728 Msa0502730:intron 35.0%
!!! TCATGGGTTTTTAAGTCAAG+TGG - chr3_4:45389831-45389850 None:intergenic 35.0%
! GTTTGGGATCTGATGAATTT+GGG - chr3_4:45389959-45389978 None:intergenic 35.0%
AAGGGTGAGAAATTAGGTTT+GGG - chr3_4:45389975-45389994 None:intergenic 35.0%
! GGGTTTGATGGTTAATAAGA+GGG - chr3_4:45390052-45390071 None:intergenic 35.0%
TGAGTCATTCAATCGTAATG+TGG - chr3_4:45390247-45390266 None:intergenic 35.0%
ATTACGATTGAATGACTCAC+AGG + chr3_4:45390248-45390267 Msa0502730:intron 35.0%
TAAAGAAAGATGAACACGGA+AGG - chr3_4:45390286-45390305 None:intergenic 35.0%
TGTGAAGACTGTTGGAAATT+TGG + chr3_4:45390393-45390412 Msa0502730:intron 35.0%
TTCTTCTTTCATTCGCTACT+TGG + chr3_4:45390538-45390557 Msa0502730:intron 35.0%
TCTTCTTTCATTCGCTACTT+GGG + chr3_4:45390539-45390558 Msa0502730:intron 35.0%
!!! AGATTTTTTGTTGCTTAGGG+TGG + chr3_4:45390590-45390609 Msa0502730:intron 35.0%
!!! GATTTTTTGTTGCTTAGGGT+GGG + chr3_4:45390591-45390610 Msa0502730:intron 35.0%
CCCAATGATAAATCAATCCA+TGG - chr3_4:45390712-45390731 None:intergenic 35.0%
TATCAAGTTCTGTTTAACCG+TGG - chr3_4:45390805-45390824 None:intergenic 35.0%
GTATATTAGGTAACTGGTTG+TGG + chr3_4:45390834-45390853 Msa0502730:intron 35.0%
GTTCAATATTGTTGGCATGA+AGG + chr3_4:45390961-45390980 Msa0502730:intron 35.0%
!! TGCGATCATTTTTGTCAAAC+GGG + chr3_4:45391202-45391221 Msa0502730:CDS 35.0%
!! ATCATTTTTGTCAAACGGGA+AGG + chr3_4:45391206-45391225 Msa0502730:CDS 35.0%
! TTGCAAGATGTCTGAAATTG+TGG - chr3_4:45391352-45391371 None:intergenic 35.0%
ACAATTTCAGACATCTTGCA+AGG + chr3_4:45391351-45391370 Msa0502730:intron 35.0%
ATCTTGCAAGGAAAAGGTAA+AGG + chr3_4:45391363-45391382 Msa0502730:CDS 35.0%
AACATAAACAGTGTCATCTG+TGG - chr3_4:45391415-45391434 None:intergenic 35.0%
TGCAGATGACAAAACAATGT+TGG + chr3_4:45391530-45391549 Msa0502730:intron 35.0%
!! TAGTTTAAAGCACTGCTGAC+TGG + chr3_4:45387887-45387906 Msa0502730:intron 40.0%
AGTACATACCTGCAGAATCA+GGG - chr3_4:45388167-45388186 None:intergenic 40.0%
TAGTACATACCTGCAGAATC+AGG - chr3_4:45388168-45388187 None:intergenic 40.0%
GGTAGTCACACTAGAAAGAT+AGG - chr3_4:45388517-45388536 None:intergenic 40.0%
TAAAGGTCATGTCGTGTATG+TGG + chr3_4:45388891-45388910 Msa0502730:intron 40.0%
! TAGCATACAAGGGTTTTCAG+CGG - chr3_4:45388933-45388952 None:intergenic 40.0%
! ATAAGCTGGATTTGTTCCAG+TGG + chr3_4:45389057-45389076 Msa0502730:intron 40.0%
TATATGAAAACTGCAGCCAC+TGG - chr3_4:45389076-45389095 None:intergenic 40.0%
GTTTACATGACGAGACATTG+TGG + chr3_4:45389362-45389381 Msa0502730:intron 40.0%
GTGAACATCCGATTTATAGG+TGG - chr3_4:45389720-45389739 None:intergenic 40.0%
! GGTTTGGGATCTGATGAATT+TGG - chr3_4:45389960-45389979 None:intergenic 40.0%
GAAGGGTGAGAAATTAGGTT+TGG - chr3_4:45389976-45389995 None:intergenic 40.0%
! CGGGTTTGATGGTTAATAAG+AGG - chr3_4:45390053-45390072 None:intergenic 40.0%
AGAATAGAGGGTTTCAGTGA+GGG - chr3_4:45390167-45390186 None:intergenic 40.0%
AGGGATTTGCAGAGAATAGA+GGG - chr3_4:45390179-45390198 None:intergenic 40.0%
! AGTGATTCGACAGTTGGTTT+GGG - chr3_4:45390210-45390229 None:intergenic 40.0%
AAGTGATTCGACAGTTGGTT+TGG - chr3_4:45390211-45390230 None:intergenic 40.0%
ACCAACTGTCGAATCACTTT+CGG + chr3_4:45390212-45390231 Msa0502730:intron 40.0%
GGATTGAATGTGAAGACTGT+TGG + chr3_4:45390385-45390404 Msa0502730:intron 40.0%
GAAATTGTGAGAGACAGTGA+AGG + chr3_4:45390465-45390484 Msa0502730:intron 40.0%
! TGAGAGACAGTGAAGGTTTT+GGG + chr3_4:45390472-45390491 Msa0502730:intron 40.0%
GGGAATTCTGTATGATCTAG+TGG + chr3_4:45390729-45390748 Msa0502730:intron 40.0%
! GAAAAAGGTGACGAGTTTTG+AGG - chr3_4:45391095-45391114 None:intergenic 40.0%
AAAGGAAACTGGCTGCAAAA+GGG - chr3_4:45391274-45391293 None:intergenic 40.0%
AAAAGGAAACTGGCTGCAAA+AGG - chr3_4:45391275-45391294 None:intergenic 40.0%
TCAAACCGTGAAAAGGAAAC+TGG - chr3_4:45391285-45391304 None:intergenic 40.0%
TCAGACATCTTGCAAGGAAA+AGG + chr3_4:45391357-45391376 Msa0502730:intron 40.0%
CAATGTTGGAACTTGTGAGT+TGG + chr3_4:45391544-45391563 Msa0502730:intron 40.0%
ATGGCTTCTCTATTGTGCTC+TGG + chr3_4:45387861-45387880 Msa0502730:intron 45.0%
!! TTTAAAGCACTGCTGACTGG+TGG + chr3_4:45387890-45387909 Msa0502730:intron 45.0%
TGTCAATGCCCTTCATGTTC+AGG + chr3_4:45388129-45388148 Msa0502730:CDS 45.0%
AATTGGAACCCTGATTCTGC+AGG + chr3_4:45388156-45388175 Msa0502730:CDS 45.0%
CTGCAGTTGTGTAGAAAGAG+TGG + chr3_4:45388238-45388257 Msa0502730:intron 45.0%
TTTGCACTGCTTCCTGTCTT+GGG + chr3_4:45388376-45388395 Msa0502730:CDS 45.0%
TGGAACATCAGGTGTTCTTC+AGG + chr3_4:45388399-45388418 Msa0502730:CDS 45.0%
GGAACATCAGGTGTTCTTCA+GGG + chr3_4:45388400-45388419 Msa0502730:CDS 45.0%
TCGTGTATGTGGTGGTATCT+AGG + chr3_4:45388902-45388921 Msa0502730:intron 45.0%
TTGGGCCATAGTGAGGTTAT+TGG + chr3_4:45389197-45389216 Msa0502730:intron 45.0%
CCTTGCCAATAACCTCACTA+TGG - chr3_4:45389205-45389224 None:intergenic 45.0%
CCATAGTGAGGTTATTGGCA+AGG + chr3_4:45389202-45389221 Msa0502730:intron 45.0%
CGGGTGAACATCCGATTTAT+AGG - chr3_4:45389723-45389742 None:intergenic 45.0%
TGAGGGAAGGGTGAGAAATT+AGG - chr3_4:45389981-45390000 None:intergenic 45.0%
TTTGGATCTCGCACAGGAAT+GGG - chr3_4:45390005-45390024 None:intergenic 45.0%
ATTTGGATCTCGCACAGGAA+TGG - chr3_4:45390006-45390025 None:intergenic 45.0%
GATGAGAGTTGGCTGAGATT+TGG - chr3_4:45390023-45390042 None:intergenic 45.0%
CAAACCTTGAGGTGATGAGT+GGG - chr3_4:45390120-45390139 None:intergenic 45.0%
ACAAACCTTGAGGTGATGAG+TGG - chr3_4:45390121-45390140 None:intergenic 45.0%
GAGAATAGAGGGTTTCAGTG+AGG - chr3_4:45390168-45390187 None:intergenic 45.0%
GAGGGATTTGCAGAGAATAG+AGG - chr3_4:45390180-45390199 None:intergenic 45.0%
!! TCGACAGTTGGTTTGGGTAA+CGG - chr3_4:45390204-45390223 None:intergenic 45.0%
ACCGAAAGTGATTCGACAGT+TGG - chr3_4:45390216-45390235 None:intergenic 45.0%
! GTGAGAGACAGTGAAGGTTT+TGG + chr3_4:45390471-45390490 Msa0502730:intron 45.0%
! GAGAGACAGTGAAGGTTTTG+GGG + chr3_4:45390473-45390492 Msa0502730:intron 45.0%
TAGACAGCCAAAATGCAAGC+AGG + chr3_4:45391177-45391196 Msa0502730:intron 45.0%
! TCGCAATCCTGCTTGCATTT+TGG - chr3_4:45391187-45391206 None:intergenic 45.0%
AAGGAAACTGGCTGCAAAAG+GGG - chr3_4:45391273-45391292 None:intergenic 45.0%
! TGCAGCCAGTTTCCTTTTCA+CGG + chr3_4:45391277-45391296 Msa0502730:CDS 45.0%
AGCAGACTCAAACCGTGAAA+AGG - chr3_4:45391292-45391311 None:intergenic 45.0%
TGCTACACCTGCTTGTATTG+AGG + chr3_4:45391308-45391327 Msa0502730:CDS 45.0%
!! GGAAAAGGTAAAGGTGCTGA+TGG + chr3_4:45391372-45391391 Msa0502730:CDS 45.0%
!!! TAAAATCTTTTAATTTAAAT+CGG - chr3_4:45389614-45389633 None:intergenic 5.0%
!!! ATATAAAATTGTTTTTAAAT+CGG - chr3_4:45389896-45389915 None:intergenic 5.0%
GCTGACTGGTGGTATGTGAA+TGG + chr3_4:45387901-45387920 Msa0502730:intron 50.0%
CTTTGCACTGCTTCCTGTCT+TGG + chr3_4:45388375-45388394 Msa0502730:CDS 50.0%
AGGTCATGTCGTGTATGTGG+TGG + chr3_4:45388894-45388913 Msa0502730:intron 50.0%
! TGATGCTTTGGGCCATAGTG+AGG + chr3_4:45389190-45389209 Msa0502730:CDS 50.0%
TTGGATCTCGCACAGGAATG+GGG - chr3_4:45390004-45390023 None:intergenic 50.0%
CTGAGATTTGGATCTCGCAC+AGG - chr3_4:45390011-45390030 None:intergenic 50.0%
GAGGGTCGATTGATGAGAGT+TGG - chr3_4:45390034-45390053 None:intergenic 50.0%
GAAACCCACTCATCACCTCA+AGG + chr3_4:45390113-45390132 Msa0502730:CDS 50.0%
GAGGTTTCGCACAAACCTTG+AGG - chr3_4:45390131-45390150 None:intergenic 50.0%
!! GTTGGTTTGGGTAACGGTGA+GGG - chr3_4:45390198-45390217 None:intergenic 50.0%
!! AGTTGGTTTGGGTAACGGTG+AGG - chr3_4:45390199-45390218 None:intergenic 50.0%
! TGTTTTGCAACGAGTCCGCA+CGG + chr3_4:45391242-45391261 Msa0502730:CDS 50.0%
CCATGCTCCTCAATACAAGC+AGG - chr3_4:45391318-45391337 None:intergenic 50.0%
CCTGCTTGTATTGAGGAGCA+TGG + chr3_4:45391315-45391334 Msa0502730:CDS 50.0%
!! GTAAAGGTGCTGATGGTTCC+TGG + chr3_4:45391379-45391398 Msa0502730:CDS 50.0%
CCTGATGTTCCACCCAAGAC+AGG - chr3_4:45388391-45388410 None:intergenic 55.0%
CCTGTCTTGGGTGGAACATC+AGG + chr3_4:45388388-45388407 Msa0502730:CDS 55.0%
ACAGGAATGGGGTGAGGGAA+GGG - chr3_4:45389993-45390012 None:intergenic 55.0%
! GTGATGAGTGGGTTTCGCGA+CGG - chr3_4:45390109-45390128 None:intergenic 55.0%
TTCAGTGAGGGTGAGGGCTT+TGG - chr3_4:45390155-45390174 None:intergenic 55.0%
GAGGGTTTCAGTGAGGGTGA+GGG - chr3_4:45390161-45390180 None:intergenic 55.0%
AGAGGGTTTCAGTGAGGGTG+AGG - chr3_4:45390162-45390181 None:intergenic 55.0%
GCAAAAGGGGATTCACCGTG+CGG - chr3_4:45391260-45391279 None:intergenic 55.0%
! GTGCTGATGGTTCCTGGCTT+TGG + chr3_4:45391385-45391404 Msa0502730:CDS 55.0%
ATCTGTGGTGCACCAAAGCC+AGG - chr3_4:45391400-45391419 None:intergenic 55.0%
GCACTGCTTCCTGTCTTGGG+TGG + chr3_4:45388379-45388398 Msa0502730:CDS 60.0%
CACAGGAATGGGGTGAGGGA+AGG - chr3_4:45389994-45390013 None:intergenic 60.0%
CTCGCACAGGAATGGGGTGA+GGG - chr3_4:45389998-45390017 None:intergenic 60.0%
TCTCGCACAGGAATGGGGTG+AGG - chr3_4:45389999-45390018 None:intergenic 60.0%
TGGATGTGCGGGTTTCGCGA+CGG - chr3_4:45390079-45390098 None:intergenic 60.0%
! ATGAGTGGGTTTCGCGACGG+AGG - chr3_4:45390106-45390125 None:intergenic 60.0%
! TGAGGGTGAGGGCTTTGGTG+AGG - chr3_4:45390150-45390169 None:intergenic 60.0%
ATGTGCGGGTTTCGCGACGG+CGG - chr3_4:45390076-45390095 None:intergenic 65.0%
ACGGAGGTGGGTGGATGTGC+GGG - chr3_4:45390090-45390109 None:intergenic 65.0%
GACGGAGGTGGGTGGATGTG+CGG - chr3_4:45390091-45390110 None:intergenic 65.0%
GTGGGTTTCGCGACGGAGGT+GGG - chr3_4:45390102-45390121 None:intergenic 65.0%
! AGTGGGTTTCGCGACGGAGG+TGG - chr3_4:45390103-45390122 None:intergenic 65.0%
GGTTTCGCGACGGAGGTGGG+TGG - chr3_4:45390099-45390118 None:intergenic 70.0%
! CGCGACGGCGGCGGGTTTGA+TGG - chr3_4:45390064-45390083 None:intergenic 75.0%
TGCGGGTTTCGCGACGGCGG+CGG - chr3_4:45390073-45390092 None:intergenic 75.0%
! GCGGGTTTCGCGACGGCGGC+GGG - chr3_4:45390072-45390091 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 45387839 45391652 45387839 ID=Msa0502730;Name=Msa0502730
chr3_4 mRNA 45387839 45391652 45387839 ID=Msa0502730-mRNA-1;Parent=Msa0502730;Name=Msa0502730-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0.14|0|0.5|0.28|0.37|8|0|207
chr3_4 exon 45387839 45387844 45387839 ID=Msa0502730-mRNA-1:exon:9643;Parent=Msa0502730-mRNA-1
chr3_4 exon 45388100 45388177 45388100 ID=Msa0502730-mRNA-1:exon:9644;Parent=Msa0502730-mRNA-1
chr3_4 exon 45388355 45388423 45388355 ID=Msa0502730-mRNA-1:exon:9645;Parent=Msa0502730-mRNA-1
chr3_4 exon 45389158 45389211 45389158 ID=Msa0502730-mRNA-1:exon:9646;Parent=Msa0502730-mRNA-1
chr3_4 exon 45389970 45390134 45389970 ID=Msa0502730-mRNA-1:exon:9647;Parent=Msa0502730-mRNA-1
chr3_4 exon 45391180 45391336 45391180 ID=Msa0502730-mRNA-1:exon:9648;Parent=Msa0502730-mRNA-1
chr3_4 exon 45391361 45391446 45391361 ID=Msa0502730-mRNA-1:exon:9649;Parent=Msa0502730-mRNA-1
chr3_4 exon 45391647 45391652 45391647 ID=Msa0502730-mRNA-1:exon:9650;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45387839 45387844 45387839 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45388100 45388177 45388100 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45388355 45388423 45388355 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45389158 45389211 45389158 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45389970 45390134 45389970 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45391180 45391336 45391180 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45391361 45391446 45391361 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
chr3_4 CDS 45391647 45391652 45391647 ID=Msa0502730-mRNA-1:cds;Parent=Msa0502730-mRNA-1
Gene Sequence

>Msa0502730

ATGTTGGTCTTGAAATTCTTAATGGAAAGGAACAGTGTCAATGCCCTTCATGTTCAGGTTATAATTGGAACCCTGATTCTGCAGGATTGTGTTGTCGGTTTGCTCTTTGCACTGCTTCCTGTCTTGGGTGGAACATCAGGTGTTCTTCAGGGAGTTCAAGTAATGATTACTGCAATTGATTCAGTTGATGCTTTGGGCCATAGTGAGATCCCAAACCTAATTTCTCACCCTTCCCTCACCCCATTCCTGTGCGAGATCCAAATCTCAGCCAACTCTCATCAATCGACCCTCTTATTAACCATCAAACCCGCCGCCGTCGCGAAACCCGCACATCCACCCACCTCCGTCGCGAAACCCACTCATCACCTCAAGACAGCCAAAATGCAAGCAGGATTGCGATCATTTTTGTCAAACGGGAAGGTCATTAAAAATGCTGTTTTGCAACGAGTCCGCACGGTGAATCCCCTTTTGCAGCCAGTTTCCTTTTCACGGTTTGAGTCTGCTACACCTGCTTGTATTGAGGAGCATGACATCTTGCAAGGAAAAGGTAAAGGTGCTGATGGTTCCTGGCTTTGGTGCACCACAGATGACACTGTTTATGTTGCTGTCAAATCGAAGGTG

Protein sequence

>Msa0502730

MLVLKFLMERNSVNALHVQVIIGTLILQDCVVGLLFALLPVLGGTSGVLQGVQVMITAIDSVDALGHSEIPNLISHPSLTPFLCEIQISANSHQSTLLLTIKPAAVAKPAHPPTSVAKPTHHLKTAKMQAGLRSFLSNGKVIKNAVLQRVRTVNPLLQPVSFSRFESATPACIEEHDILQGKGKGADGSWLWCTTDDTVYVAVKSKV