Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502980 | XP_013459956.1 | 72.165 | 97 | 26 | 1 | 20 | 115 | 412 | 508 | 1.94e-35 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502980 | sp|Q6L3Y2|R1B11_SOLDE | 47.692 | 65 | 33 | 1 | 52 | 115 | 796 | 860 | 6.29e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502980 | A0A072UWL3 | 72.165 | 97 | 26 | 1 | 20 | 115 | 412 | 508 | 9.28e-36 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0409490 | Msa0502980 | 0.819763 | 9.791812e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502980 | MtrunA17_Chr3g0101331 | 72.165 | 97 | 26 | 1 | 20 | 115 | 412 | 508 | 1.79e-39 | 139 |
| Msa0502980 | MtrunA17_Chr3g0100831 | 69.792 | 96 | 28 | 1 | 21 | 115 | 400 | 495 | 2.44e-38 | 136 |
| Msa0502980 | MtrunA17_Chr3g0112511 | 68.041 | 97 | 30 | 1 | 20 | 115 | 395 | 491 | 4.62e-38 | 135 |
| Msa0502980 | MtrunA17_Chr3g0100731 | 67.677 | 99 | 25 | 2 | 21 | 115 | 160 | 255 | 1.89e-37 | 133 |
| Msa0502980 | MtrunA17_Chr3g0100681 | 67.708 | 96 | 30 | 1 | 21 | 115 | 218 | 313 | 1.16e-36 | 130 |
| Msa0502980 | MtrunA17_Chr1g0189321 | 65.979 | 97 | 26 | 2 | 23 | 115 | 1 | 94 | 1.95e-36 | 124 |
| Msa0502980 | MtrunA17_Chr3g0100961 | 66.667 | 96 | 31 | 1 | 21 | 115 | 405 | 500 | 2.83e-36 | 130 |
| Msa0502980 | MtrunA17_Chr3g0100971 | 66.667 | 96 | 31 | 1 | 21 | 115 | 402 | 497 | 6.34e-36 | 129 |
| Msa0502980 | MtrunA17_Chr3g0100851 | 63.542 | 96 | 34 | 1 | 21 | 115 | 281 | 376 | 2.31e-35 | 127 |
| Msa0502980 | MtrunA17_Chr3g0100761 | 64.583 | 96 | 33 | 1 | 21 | 115 | 362 | 457 | 2.03e-34 | 124 |
| Msa0502980 | MtrunA17_Chr3g0101391 | 65.625 | 96 | 32 | 1 | 21 | 115 | 87 | 182 | 5.43e-34 | 123 |
| Msa0502980 | MtrunA17_Chr3g0101321 | 64.583 | 96 | 33 | 1 | 21 | 115 | 397 | 492 | 2.95e-33 | 121 |
| Msa0502980 | MtrunA17_Chr3g0100801 | 85.938 | 64 | 9 | 0 | 52 | 115 | 393 | 456 | 1.21e-32 | 119 |
| Msa0502980 | MtrunA17_Chr1g0189351 | 63.918 | 97 | 34 | 1 | 20 | 115 | 401 | 497 | 1.69e-32 | 119 |
| Msa0502980 | MtrunA17_Chr1g0149071 | 62.500 | 96 | 19 | 1 | 20 | 115 | 122 | 200 | 8.90e-30 | 110 |
| Msa0502980 | MtrunA17_Chr1g0189271 | 64.286 | 84 | 29 | 1 | 20 | 102 | 241 | 324 | 3.20e-29 | 107 |
| Msa0502980 | MtrunA17_Chr3g0101171 | 68.493 | 73 | 22 | 1 | 43 | 115 | 1 | 72 | 4.05e-29 | 101 |
| Msa0502980 | MtrunA17_Chr3g0101251 | 60.825 | 97 | 34 | 2 | 20 | 115 | 368 | 461 | 4.26e-29 | 109 |
| Msa0502980 | MtrunA17_Chr1g0151481 | 55.102 | 98 | 39 | 2 | 21 | 115 | 408 | 503 | 1.78e-28 | 108 |
| Msa0502980 | MtrunA17_Chr3g0080791 | 53.608 | 97 | 44 | 1 | 20 | 115 | 406 | 502 | 9.09e-28 | 105 |
| Msa0502980 | MtrunA17_Chr3g0080771 | 53.608 | 97 | 44 | 1 | 20 | 115 | 406 | 502 | 1.06e-27 | 105 |
| Msa0502980 | MtrunA17_Chr3g0101181 | 57.732 | 97 | 37 | 2 | 20 | 115 | 412 | 505 | 2.79e-26 | 101 |
| Msa0502980 | MtrunA17_Chr3g0094301 | 51.546 | 97 | 46 | 1 | 20 | 115 | 406 | 502 | 4.63e-26 | 101 |
| Msa0502980 | MtrunA17_Chr7g0229761 | 51.546 | 97 | 46 | 1 | 20 | 115 | 406 | 502 | 4.63e-26 | 101 |
| Msa0502980 | MtrunA17_Chr3g0080741 | 50.515 | 97 | 47 | 1 | 20 | 115 | 408 | 504 | 5.63e-26 | 100 |
| Msa0502980 | MtrunA17_Chr3g0101221 | 55.670 | 97 | 40 | 3 | 20 | 115 | 407 | 501 | 1.04e-25 | 100 |
| Msa0502980 | MtrunA17_Chr3g0101211 | 56.701 | 97 | 39 | 3 | 20 | 115 | 194 | 288 | 1.33e-25 | 99.0 |
| Msa0502980 | MtrunA17_Chr3g0081391 | 50.515 | 97 | 47 | 1 | 20 | 115 | 405 | 501 | 2.25e-25 | 99.4 |
| Msa0502980 | MtrunA17_Chr3g0081361 | 49.505 | 101 | 46 | 2 | 18 | 115 | 408 | 506 | 2.35e-25 | 99.4 |
| Msa0502980 | MtrunA17_Chr3g0080601 | 53.608 | 97 | 44 | 1 | 20 | 115 | 405 | 501 | 3.96e-25 | 98.6 |
| Msa0502980 | MtrunA17_Chr3g0080731 | 49.485 | 97 | 48 | 1 | 20 | 115 | 406 | 502 | 7.89e-25 | 97.8 |
| Msa0502980 | MtrunA17_Chr3g0084351 | 50.515 | 97 | 47 | 1 | 20 | 115 | 331 | 427 | 2.42e-24 | 96.3 |
| Msa0502980 | MtrunA17_Chr3g0101011 | 51.613 | 93 | 44 | 1 | 20 | 111 | 418 | 510 | 2.48e-24 | 96.3 |
| Msa0502980 | MtrunA17_Chr3g0080651 | 51.546 | 97 | 45 | 2 | 15 | 109 | 318 | 414 | 3.74e-24 | 95.9 |
| Msa0502980 | MtrunA17_Chr3g0080721 | 53.846 | 91 | 41 | 1 | 20 | 109 | 144 | 234 | 3.84e-24 | 95.5 |
| Msa0502980 | MtrunA17_Chr3g0081371 | 50.515 | 97 | 47 | 1 | 20 | 115 | 410 | 506 | 4.85e-24 | 95.5 |
| Msa0502980 | MtrunA17_Chr5g0444301 | 78.947 | 57 | 12 | 0 | 59 | 115 | 1 | 57 | 7.12e-24 | 94.4 |
| Msa0502980 | MtrunA17_Chr3g0101201 | 52.577 | 97 | 43 | 2 | 20 | 115 | 405 | 499 | 9.64e-24 | 94.7 |
| Msa0502980 | MtrunA17_Chr3g0081341 | 50.515 | 97 | 47 | 1 | 20 | 115 | 469 | 565 | 1.40e-23 | 94.0 |
| Msa0502980 | MtrunA17_Chr3g0081211 | 50.549 | 91 | 44 | 1 | 26 | 115 | 410 | 500 | 1.63e-23 | 94.0 |
| Msa0502980 | MtrunA17_Chr3g0080751 | 51.000 | 100 | 43 | 3 | 20 | 115 | 406 | 503 | 1.63e-23 | 94.0 |
| Msa0502980 | MtrunA17_Chr3g0081191 | 46.000 | 100 | 51 | 2 | 18 | 115 | 399 | 497 | 2.57e-22 | 90.5 |
| Msa0502980 | MtrunA17_Chr3g0101241 | 51.546 | 97 | 43 | 2 | 20 | 115 | 381 | 474 | 1.60e-21 | 88.2 |
| Msa0502980 | MtrunA17_Chr3g0100701 | 85.417 | 48 | 7 | 0 | 68 | 115 | 283 | 330 | 1.61e-21 | 88.2 |
| Msa0502980 | MtrunA17_Chr3g0101271 | 51.546 | 97 | 43 | 2 | 20 | 115 | 381 | 474 | 1.65e-21 | 88.2 |
| Msa0502980 | MtrunA17_Chr3g0101231 | 68.750 | 64 | 20 | 0 | 52 | 115 | 442 | 505 | 2.51e-21 | 87.8 |
| Msa0502980 | MtrunA17_Chr3g0081181 | 49.000 | 100 | 43 | 3 | 20 | 115 | 390 | 485 | 3.17e-20 | 84.3 |
| Msa0502980 | MtrunA17_Chr5g0410021 | 44.565 | 92 | 50 | 1 | 25 | 115 | 392 | 483 | 4.71e-17 | 75.5 |
| Msa0502980 | MtrunA17_Chr5g0410031 | 41.053 | 95 | 55 | 1 | 22 | 115 | 393 | 487 | 5.51e-17 | 75.1 |
| Msa0502980 | MtrunA17_Chr5g0409971 | 44.565 | 92 | 50 | 1 | 25 | 115 | 395 | 486 | 1.24e-16 | 74.3 |
| Msa0502980 | MtrunA17_Chr5g0410001 | 40.206 | 97 | 53 | 2 | 22 | 115 | 392 | 486 | 1.59e-16 | 73.9 |
| Msa0502980 | MtrunA17_Chr5g0409991 | 44.565 | 92 | 50 | 1 | 25 | 115 | 390 | 481 | 8.59e-16 | 72.0 |
| Msa0502980 | MtrunA17_Chr5g0404741 | 48.333 | 60 | 31 | 0 | 52 | 111 | 421 | 480 | 1.92e-14 | 68.2 |
| Msa0502980 | MtrunA17_Chr4g0037421 | 42.188 | 64 | 37 | 0 | 52 | 115 | 482 | 545 | 4.53e-14 | 67.0 |
| Msa0502980 | MtrunA17_Chr3g0080631 | 55.556 | 54 | 24 | 0 | 62 | 115 | 404 | 457 | 6.44e-13 | 63.5 |
| Msa0502980 | MtrunA17_Chr3g0100791 | 80.000 | 35 | 7 | 0 | 81 | 115 | 1 | 35 | 1.55e-12 | 62.4 |
| Msa0502980 | MtrunA17_Chr8g0344071 | 42.857 | 63 | 36 | 0 | 53 | 115 | 690 | 752 | 3.87e-12 | 61.6 |
| Msa0502980 | MtrunA17_Chr3g0101361 | 75.000 | 36 | 9 | 0 | 80 | 115 | 295 | 330 | 1.33e-11 | 60.1 |
| Msa0502980 | MtrunA17_Chr3g0081841 | 51.613 | 62 | 29 | 1 | 55 | 115 | 189 | 250 | 7.19e-11 | 57.8 |
| Msa0502980 | MtrunA17_Chr7g0219851 | 42.647 | 68 | 35 | 1 | 52 | 115 | 424 | 491 | 7.52e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502980 | AT3G07040.1 | 46.429 | 56 | 30 | 0 | 53 | 108 | 434 | 489 | 3.43e-11 | 59.3 |
Find 19 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCATGTTTGTTGTATTT+TGG | 0.154976 | 3_4:+45811832 | Msa0502980:CDS |
| GATTCAACTTCATAATCTTT+TGG | 0.252017 | 3_4:-45811862 | None:intergenic |
| ATGCATGATTTAAGATAAAA+AGG | 0.281885 | 3_4:-45811816 | None:intergenic |
| AGTTGCAGAAGGATATTTAA+TGG | 0.315002 | 3_4:+45811954 | Msa0502980:CDS |
| AAGAAGAATTCCCATTTGAT+TGG | 0.336069 | 3_4:+45811756 | Msa0502980:CDS |
| GTATCCTCACTTAGAATTGA+TGG | 0.358881 | 3_4:+45812003 | Msa0502980:CDS |
| GGAGCTGATTCATCGAAGTT+TGG | 0.401620 | 3_4:+45811975 | Msa0502980:CDS |
| TTCATCCTTCACAAATCCTT+CGG | 0.412281 | 3_4:-45811911 | None:intergenic |
| AGAAGAATTCCCATTTGATT+GGG | 0.422602 | 3_4:+45811757 | Msa0502980:CDS |
| TGATGATGAACTTAGCAAAC+TGG | 0.482104 | 3_4:+45810977 | None:intergenic |
| AGGATTTGTGAAGGATGAAA+GGG | 0.513336 | 3_4:+45811915 | Msa0502980:CDS |
| AAGGATTTGTGAAGGATGAA+AGG | 0.525589 | 3_4:+45811914 | Msa0502980:CDS |
| TCTATACTGTTTAGTCCTCA+CGG | 0.582237 | 3_4:+45811005 | Msa0502980:CDS |
| CAAAGAGATCGATTCGACAA+TGG | 0.600842 | 3_4:+45811884 | Msa0502980:CDS |
| ACTTTGGAACAAGTTGCAGA+AGG | 0.612209 | 3_4:+45811943 | Msa0502980:CDS |
| TTATCCATCAATTCTAAGTG+AGG | 0.617291 | 3_4:-45812007 | None:intergenic |
| GGATTTGTGAAGGATGAAAG+GGG | 0.639183 | 3_4:+45811916 | Msa0502980:CDS |
| ATTCGACAATGGATAGCCGA+AGG | 0.650930 | 3_4:+45811895 | Msa0502980:CDS |
| GATAGCCGAAGGATTTGTGA+AGG | 0.660075 | 3_4:+45811906 | Msa0502980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACACATTTATTTTTTATTA+AGG | - | chr3_4:45811431-45811450 | None:intergenic | 10.0% |
| !!! | AACACATTTATTTTTTATTA+AGG | - | chr3_4:45811431-45811450 | None:intergenic | 10.0% |
| !!! | TGTCTTTTATATTGATAATT+TGG | + | chr3_4:45811297-45811316 | Msa0502980:intron | 15.0% |
| !!! | TGTCTTTTATATTGATAATT+TGG | + | chr3_4:45811297-45811316 | Msa0502980:intron | 15.0% |
| !! | ATACAATTCAATATAAGGAT+TGG | - | chr3_4:45811263-45811282 | None:intergenic | 20.0% |
| !! | CGATTATACAATTCAATATA+AGG | - | chr3_4:45811268-45811287 | None:intergenic | 20.0% |
| !!! | ACTCAATTTTCTTGAATAAA+AGG | - | chr3_4:45811484-45811503 | None:intergenic | 20.0% |
| !!! | TTTGGTTGTTATTTATACAA+CGG | + | chr3_4:45811643-45811662 | Msa0502980:intron | 20.0% |
| !!! | ATGCATGATTTAAGATAAAA+AGG | - | chr3_4:45811819-45811838 | None:intergenic | 20.0% |
| !! | ATACAATTCAATATAAGGAT+TGG | - | chr3_4:45811263-45811282 | None:intergenic | 20.0% |
| !! | CGATTATACAATTCAATATA+AGG | - | chr3_4:45811268-45811287 | None:intergenic | 20.0% |
| !!! | ACTCAATTTTCTTGAATAAA+AGG | - | chr3_4:45811484-45811503 | None:intergenic | 20.0% |
| !!! | TTTGGTTGTTATTTATACAA+CGG | + | chr3_4:45811643-45811662 | Msa0502980:intron | 20.0% |
| !!! | ATGCATGATTTAAGATAAAA+AGG | - | chr3_4:45811819-45811838 | None:intergenic | 20.0% |
| !!! | TTTACACATCACTAGTTTTA+TGG | + | chr3_4:45811205-45811224 | Msa0502980:intron | 25.0% |
| ! | TACAAATTACAATCATTCGA+AGG | - | chr3_4:45811542-45811561 | None:intergenic | 25.0% |
| !! | CATGTAAATGCATTTTTACA+TGG | - | chr3_4:45811702-45811721 | None:intergenic | 25.0% |
| ! | CATGTAAAAATGCATTTACA+TGG | + | chr3_4:45811700-45811719 | Msa0502980:intron | 25.0% |
| !! | TTTTCTTATCCCAATCAAAT+GGG | - | chr3_4:45811769-45811788 | None:intergenic | 25.0% |
| !! | ATTGGGATAAGAAAAGTTTT+AGG | + | chr3_4:45811774-45811793 | Msa0502980:intron | 25.0% |
| !! | GATTCAACTTCATAATCTTT+TGG | - | chr3_4:45811865-45811884 | None:intergenic | 25.0% |
| !!! | TTTACACATCACTAGTTTTA+TGG | + | chr3_4:45811205-45811224 | Msa0502980:intron | 25.0% |
| ! | TACAAATTACAATCATTCGA+AGG | - | chr3_4:45811542-45811561 | None:intergenic | 25.0% |
| !! | CATGTAAATGCATTTTTACA+TGG | - | chr3_4:45811702-45811721 | None:intergenic | 25.0% |
| ! | CATGTAAAAATGCATTTACA+TGG | + | chr3_4:45811700-45811719 | Msa0502980:intron | 25.0% |
| !! | TTTTCTTATCCCAATCAAAT+GGG | - | chr3_4:45811769-45811788 | None:intergenic | 25.0% |
| !! | ATTGGGATAAGAAAAGTTTT+AGG | + | chr3_4:45811774-45811793 | Msa0502980:intron | 25.0% |
| !! | GATTCAACTTCATAATCTTT+TGG | - | chr3_4:45811865-45811884 | None:intergenic | 25.0% |
| ! | TACATTGCTTCTTTCTTTTC+AGG | + | chr3_4:45811387-45811406 | Msa0502980:intron | 30.0% |
| TTAAGGAAATGTTCCAAAAC+AGG | - | chr3_4:45811414-45811433 | None:intergenic | 30.0% | |
| CTTGAATAAAAGGACAAAGT+AGG | - | chr3_4:45811474-45811493 | None:intergenic | 30.0% | |
| ! | TTCTTCTACTTCTGTAGTTT+TGG | + | chr3_4:45811625-45811644 | Msa0502980:intron | 30.0% |
| AAGAAGAATTCCCATTTGAT+TGG | + | chr3_4:45811756-45811775 | Msa0502980:CDS | 30.0% | |
| AGAAGAATTCCCATTTGATT+GGG | + | chr3_4:45811757-45811776 | Msa0502980:CDS | 30.0% | |
| ! | CTTTTCTTATCCCAATCAAA+TGG | - | chr3_4:45811770-45811789 | None:intergenic | 30.0% |
| GATAAAAAGGCAAATCATTG+TGG | - | chr3_4:45811806-45811825 | None:intergenic | 30.0% | |
| !!! | CATGCATGTTTGTTGTATTT+TGG | + | chr3_4:45811832-45811851 | Msa0502980:CDS | 30.0% |
| AGTTGCAGAAGGATATTTAA+TGG | + | chr3_4:45811954-45811973 | Msa0502980:CDS | 30.0% | |
| TTATCCATCAATTCTAAGTG+AGG | - | chr3_4:45812010-45812029 | None:intergenic | 30.0% | |
| ! | TACATTGCTTCTTTCTTTTC+AGG | + | chr3_4:45811387-45811406 | Msa0502980:intron | 30.0% |
| TTAAGGAAATGTTCCAAAAC+AGG | - | chr3_4:45811414-45811433 | None:intergenic | 30.0% | |
| CTTGAATAAAAGGACAAAGT+AGG | - | chr3_4:45811474-45811493 | None:intergenic | 30.0% | |
| ! | TTCTTCTACTTCTGTAGTTT+TGG | + | chr3_4:45811625-45811644 | Msa0502980:intron | 30.0% |
| AAGAAGAATTCCCATTTGAT+TGG | + | chr3_4:45811756-45811775 | Msa0502980:CDS | 30.0% | |
| AGAAGAATTCCCATTTGATT+GGG | + | chr3_4:45811757-45811776 | Msa0502980:CDS | 30.0% | |
| ! | CTTTTCTTATCCCAATCAAA+TGG | - | chr3_4:45811770-45811789 | None:intergenic | 30.0% |
| GATAAAAAGGCAAATCATTG+TGG | - | chr3_4:45811806-45811825 | None:intergenic | 30.0% | |
| !!! | CATGCATGTTTGTTGTATTT+TGG | + | chr3_4:45811832-45811851 | Msa0502980:CDS | 30.0% |
| AGTTGCAGAAGGATATTTAA+TGG | + | chr3_4:45811954-45811973 | Msa0502980:CDS | 30.0% | |
| TTATCCATCAATTCTAAGTG+AGG | - | chr3_4:45812010-45812029 | None:intergenic | 30.0% | |
| TCTATACTGTTTAGTCCTCA+CGG | + | chr3_4:45811005-45811024 | Msa0502980:CDS | 35.0% | |
| !!! | ACATCACTAGTTTTATGGCA+AGG | + | chr3_4:45811210-45811229 | Msa0502980:intron | 35.0% |
| GAGATTCACATTTCTTCAAG+TGG | + | chr3_4:45811353-45811372 | Msa0502980:intron | 35.0% | |
| !!! | TTTCTTTTCAGGTCCTGTTT+TGG | + | chr3_4:45811398-45811417 | Msa0502980:intron | 35.0% |
| TATATTACGAGAGCTTTGCT+TGG | + | chr3_4:45811574-45811593 | Msa0502980:intron | 35.0% | |
| TTCATCCTTCACAAATCCTT+CGG | - | chr3_4:45811914-45811933 | None:intergenic | 35.0% | |
| AAGGATTTGTGAAGGATGAA+AGG | + | chr3_4:45811914-45811933 | Msa0502980:CDS | 35.0% | |
| AGGATTTGTGAAGGATGAAA+GGG | + | chr3_4:45811915-45811934 | Msa0502980:CDS | 35.0% | |
| GTATCCTCACTTAGAATTGA+TGG | + | chr3_4:45812003-45812022 | Msa0502980:CDS | 35.0% | |
| TCTATACTGTTTAGTCCTCA+CGG | + | chr3_4:45811005-45811024 | Msa0502980:CDS | 35.0% | |
| !!! | ACATCACTAGTTTTATGGCA+AGG | + | chr3_4:45811210-45811229 | Msa0502980:intron | 35.0% |
| GAGATTCACATTTCTTCAAG+TGG | + | chr3_4:45811353-45811372 | Msa0502980:intron | 35.0% | |
| !!! | TTTCTTTTCAGGTCCTGTTT+TGG | + | chr3_4:45811398-45811417 | Msa0502980:intron | 35.0% |
| TATATTACGAGAGCTTTGCT+TGG | + | chr3_4:45811574-45811593 | Msa0502980:intron | 35.0% | |
| TTCATCCTTCACAAATCCTT+CGG | - | chr3_4:45811914-45811933 | None:intergenic | 35.0% | |
| AAGGATTTGTGAAGGATGAA+AGG | + | chr3_4:45811914-45811933 | Msa0502980:CDS | 35.0% | |
| AGGATTTGTGAAGGATGAAA+GGG | + | chr3_4:45811915-45811934 | Msa0502980:CDS | 35.0% | |
| GTATCCTCACTTAGAATTGA+TGG | + | chr3_4:45812003-45812022 | Msa0502980:CDS | 35.0% | |
| !! | CAAGGTTCTAAACCCTCTAA+GGG | + | chr3_4:45811228-45811247 | Msa0502980:intron | 40.0% |
| TGGAAAAACTAGCCCTTAGA+GGG | - | chr3_4:45811243-45811262 | None:intergenic | 40.0% | |
| TTGGAAAAACTAGCCCTTAG+AGG | - | chr3_4:45811244-45811263 | None:intergenic | 40.0% | |
| !! | GATAATTTGGTGTGAACTGC+AGG | + | chr3_4:45811310-45811329 | Msa0502980:intron | 40.0% |
| !! | CAAAGAGATCGATTCGACAA+TGG | + | chr3_4:45811884-45811903 | Msa0502980:CDS | 40.0% |
| GGATTTGTGAAGGATGAAAG+GGG | + | chr3_4:45811916-45811935 | Msa0502980:CDS | 40.0% | |
| GGATGAAAGGGGAAAAACTT+TGG | + | chr3_4:45811927-45811946 | Msa0502980:CDS | 40.0% | |
| !! | ACTTTGGAACAAGTTGCAGA+AGG | + | chr3_4:45811943-45811962 | Msa0502980:CDS | 40.0% |
| !! | CAAGGTTCTAAACCCTCTAA+GGG | + | chr3_4:45811228-45811247 | Msa0502980:intron | 40.0% |
| TGGAAAAACTAGCCCTTAGA+GGG | - | chr3_4:45811243-45811262 | None:intergenic | 40.0% | |
| TTGGAAAAACTAGCCCTTAG+AGG | - | chr3_4:45811244-45811263 | None:intergenic | 40.0% | |
| !! | GATAATTTGGTGTGAACTGC+AGG | + | chr3_4:45811310-45811329 | Msa0502980:intron | 40.0% |
| !! | CAAAGAGATCGATTCGACAA+TGG | + | chr3_4:45811884-45811903 | Msa0502980:CDS | 40.0% |
| GGATTTGTGAAGGATGAAAG+GGG | + | chr3_4:45811916-45811935 | Msa0502980:CDS | 40.0% | |
| GGATGAAAGGGGAAAAACTT+TGG | + | chr3_4:45811927-45811946 | Msa0502980:CDS | 40.0% | |
| !! | ACTTTGGAACAAGTTGCAGA+AGG | + | chr3_4:45811943-45811962 | Msa0502980:CDS | 40.0% |
| TCCTCACGGCTTGTCAAAAA+AGG | + | chr3_4:45811019-45811038 | Msa0502980:CDS | 45.0% | |
| !!! | ACCTTTTTTGACAAGCCGTG+AGG | - | chr3_4:45811023-45811042 | None:intergenic | 45.0% |
| !! | GCAAGGTTCTAAACCCTCTA+AGG | + | chr3_4:45811227-45811246 | Msa0502980:intron | 45.0% |
| ATTCGACAATGGATAGCCGA+AGG | + | chr3_4:45811895-45811914 | Msa0502980:CDS | 45.0% | |
| GATAGCCGAAGGATTTGTGA+AGG | + | chr3_4:45811906-45811925 | Msa0502980:CDS | 45.0% | |
| ! | GGAGCTGATTCATCGAAGTT+TGG | + | chr3_4:45811975-45811994 | Msa0502980:CDS | 45.0% |
| TCCTCACGGCTTGTCAAAAA+AGG | + | chr3_4:45811019-45811038 | Msa0502980:CDS | 45.0% | |
| !!! | ACCTTTTTTGACAAGCCGTG+AGG | - | chr3_4:45811023-45811042 | None:intergenic | 45.0% |
| !! | GCAAGGTTCTAAACCCTCTA+AGG | + | chr3_4:45811227-45811246 | Msa0502980:intron | 45.0% |
| ATTCGACAATGGATAGCCGA+AGG | + | chr3_4:45811895-45811914 | Msa0502980:CDS | 45.0% | |
| GATAGCCGAAGGATTTGTGA+AGG | + | chr3_4:45811906-45811925 | Msa0502980:CDS | 45.0% | |
| ! | GGAGCTGATTCATCGAAGTT+TGG | + | chr3_4:45811975-45811994 | Msa0502980:CDS | 45.0% |
| TTGGTGTGAACTGCAGGTGA+TGG | + | chr3_4:45811316-45811335 | Msa0502980:intron | 50.0% | |
| ! | CTGCAGGTGATGGTCATCAA+TGG | + | chr3_4:45811326-45811345 | Msa0502980:intron | 50.0% |
| AGAGCTTTGCTTGGAGAGAG+AGG | + | chr3_4:45811583-45811602 | Msa0502980:intron | 50.0% | |
| TTGGTGTGAACTGCAGGTGA+TGG | + | chr3_4:45811316-45811335 | Msa0502980:intron | 50.0% | |
| ! | CTGCAGGTGATGGTCATCAA+TGG | + | chr3_4:45811326-45811345 | Msa0502980:intron | 50.0% |
| AGAGCTTTGCTTGGAGAGAG+AGG | + | chr3_4:45811583-45811602 | Msa0502980:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 45810982 | 45812029 | 45810982 | ID=Msa0502980;Name=Msa0502980 |
| chr3_4 | mRNA | 45810982 | 45812029 | 45810982 | ID=Msa0502980-mRNA-1;Parent=Msa0502980;Name=Msa0502980-mRNA-1;_AED=0.44;_eAED=0.50;_QI=0|0|0|1|0|0|3|0|115 |
| chr3_4 | exon | 45810982 | 45811040 | 45810982 | ID=Msa0502980-mRNA-1:exon:9789;Parent=Msa0502980-mRNA-1 |
| chr3_4 | exon | 45811734 | 45811788 | 45811734 | ID=Msa0502980-mRNA-1:exon:9790;Parent=Msa0502980-mRNA-1 |
| chr3_4 | exon | 45811796 | 45812029 | 45811796 | ID=Msa0502980-mRNA-1:exon:9791;Parent=Msa0502980-mRNA-1 |
| chr3_4 | CDS | 45810982 | 45811040 | 45810982 | ID=Msa0502980-mRNA-1:cds;Parent=Msa0502980-mRNA-1 |
| chr3_4 | CDS | 45811734 | 45811788 | 45811734 | ID=Msa0502980-mRNA-1:cds;Parent=Msa0502980-mRNA-1 |
| chr3_4 | CDS | 45811796 | 45812029 | 45811796 | ID=Msa0502980-mRNA-1:cds;Parent=Msa0502980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
