Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503180 | XP_003621910.1 | 62.559 | 211 | 68 | 2 | 1 | 200 | 1 | 211 | 2.14e-82 | 259 |
| Msa0503180 | XP_003621910.1 | 69.118 | 136 | 38 | 1 | 196 | 327 | 65 | 200 | 1.20e-57 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503180 | G7KXW3 | 62.559 | 211 | 68 | 2 | 1 | 200 | 1 | 211 | 1.02e-82 | 259 |
| Msa0503180 | G7KXW3 | 69.118 | 136 | 38 | 1 | 196 | 327 | 65 | 200 | 5.74e-58 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0503170 | Msa0503180 | 0.985929 | 4.041459e-165 | -8.615850e-47 |
| Msa0503180 | Msa0503190 | 0.941267 | 5.597257e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503180 | MtrunA17_Chr7g0223411 | 62.559 | 211 | 68 | 2 | 1 | 200 | 1 | 211 | 1.97e-86 | 259 |
| Msa0503180 | MtrunA17_Chr7g0223411 | 69.118 | 136 | 38 | 1 | 196 | 327 | 65 | 200 | 1.11e-61 | 196 |
| Msa0503180 | MtrunA17_Chr7g0223461 | 41.096 | 219 | 104 | 6 | 1 | 195 | 1 | 218 | 2.67e-43 | 148 |
| Msa0503180 | MtrunA17_Chr7g0223461 | 41.606 | 137 | 65 | 3 | 205 | 326 | 75 | 211 | 2.00e-25 | 101 |
| Msa0503180 | MtrunA17_Chr7g0223421 | 38.115 | 244 | 104 | 7 | 1 | 200 | 4 | 244 | 4.56e-41 | 143 |
| Msa0503180 | MtrunA17_Chr7g0223421 | 36.306 | 157 | 63 | 4 | 205 | 326 | 78 | 232 | 1.74e-21 | 91.7 |
| Msa0503180 | MtrunA17_Chr7g0223501 | 37.931 | 232 | 105 | 6 | 1 | 196 | 1 | 229 | 1.90e-40 | 141 |
| Msa0503180 | MtrunA17_Chr7g0223501 | 40.678 | 118 | 65 | 3 | 205 | 319 | 75 | 190 | 2.09e-18 | 82.8 |
| Msa0503180 | MtrunA17_Chr1g0162651 | 27.232 | 224 | 113 | 6 | 17 | 196 | 43 | 260 | 2.73e-17 | 80.5 |
| Msa0503180 | MtrunA17_Chr1g0162651 | 27.215 | 158 | 76 | 4 | 205 | 327 | 100 | 253 | 4.47e-11 | 62.4 |
| Msa0503180 | MtrunA17_Chr4g0034271 | 28.054 | 221 | 112 | 6 | 17 | 196 | 25 | 239 | 4.18e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503180 | AT2G16050.1 | 28.696 | 230 | 121 | 9 | 4 | 196 | 13 | 236 | 3.43e-17 | 80.1 |
Find 52 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAAGTGTTTCAAGGATA+TGG | 0.264954 | 3_4:+46144715 | Msa0503180:CDS |
| TGTGAAGTGTTTCAAGGATA+TGG | 0.264954 | 3_4:+46147350 | Msa0503180:CDS |
| CATATGACCAACCTTCAAAT+TGG | 0.292759 | 3_4:-46144661 | None:intergenic |
| CATATGACCAACCTTCAAAT+TGG | 0.292759 | 3_4:-46147296 | None:intergenic |
| CGTGCTATCATGAAATTTAC+TGG | 0.315601 | 3_4:+46144782 | Msa0503180:CDS |
| CGTGCTATCATGAAATTTAC+TGG | 0.315601 | 3_4:+46147417 | Msa0503180:CDS |
| TTACAATGAACACACTTTGA+TGG | 0.327459 | 3_4:-46144617 | None:intergenic |
| TTACAATGAACACACTTTGA+TGG | 0.327459 | 3_4:-46147252 | None:intergenic |
| AATAATAATAAGAGGTCAAA+AGG | 0.360252 | 3_4:+46144752 | Msa0503180:CDS |
| AATAATAATAAGAGGTCAAA+AGG | 0.360252 | 3_4:+46147387 | Msa0503180:CDS |
| GGTGTAGAGCATAGTCTGTT+TGG | 0.375990 | 3_4:-46144520 | None:intergenic |
| GGTGTAGAGCATAGTCTGTT+TGG | 0.375990 | 3_4:-46147155 | None:intergenic |
| ATCAAAGTGTGTTCATTGTA+AGG | 0.384337 | 3_4:+46144619 | Msa0503180:CDS |
| ATCAAAGTGTGTTCATTGTA+AGG | 0.384337 | 3_4:+46147254 | Msa0503180:CDS |
| GAAATTTACTGGCAAATTAG+TGG | 0.406057 | 3_4:+46144793 | Msa0503180:CDS |
| GAAATTTACTGGCAAATTAG+TGG | 0.406057 | 3_4:+46147428 | Msa0503180:CDS |
| TTGCAATTGCACATTCTGTA+TGG | 0.422174 | 3_4:-46144364 | None:intergenic |
| GCTTGTGGAAAAGATTTGTT+AGG | 0.436947 | 3_4:+46144479 | Msa0503180:CDS |
| GCTTGTGGAAAAGATTTGTT+AGG | 0.436947 | 3_4:+46147114 | Msa0503180:CDS |
| GTGTAGAGCATAGTCTGTTT+GGG | 0.456600 | 3_4:-46144519 | None:intergenic |
| GTGTAGAGCATAGTCTGTTT+GGG | 0.456600 | 3_4:-46147154 | None:intergenic |
| AAAGTTTGAATAATAATAAG+AGG | 0.467019 | 3_4:+46144744 | Msa0503180:CDS |
| AAAGTTTGAATAATAATAAG+AGG | 0.467019 | 3_4:+46147379 | Msa0503180:CDS |
| TGTTCATGTGAAGTGTTTCA+AGG | 0.490839 | 3_4:+46144709 | Msa0503180:CDS |
| TGTTCATGTGAAGTGTTTCA+AGG | 0.490839 | 3_4:+46147344 | Msa0503180:CDS |
| GTTGCGAGGAACCAATTTGA+AGG | 0.507705 | 3_4:+46144650 | Msa0503180:CDS |
| GTTGCGAGGAACCAATTTGA+AGG | 0.507705 | 3_4:+46147285 | Msa0503180:CDS |
| TTTAAGTTACGTGAGAAAGC+AGG | 0.518670 | 3_4:+46144437 | Msa0503180:intron |
| TTTAAGTTACGTGAGAAAGC+AGG | 0.518670 | 3_4:+46147072 | Msa0503180:intron |
| ATGGTAGCCATAAAACTAGT+AGG | 0.537312 | 3_4:-46144848 | None:intergenic |
| ATAATAATAAGAGGTCAAAA+GGG | 0.541908 | 3_4:+46144753 | Msa0503180:CDS |
| ATAATAATAAGAGGTCAAAA+GGG | 0.541908 | 3_4:+46147388 | Msa0503180:CDS |
| TAATGTATGTTGATGATCCA+TGG | 0.546047 | 3_4:-46144237 | None:intergenic |
| CATAGTCTGTTTGGGAACAA+TGG | 0.556656 | 3_4:-46144511 | None:intergenic |
| CATAGTCTGTTTGGGAACAA+TGG | 0.556656 | 3_4:-46147146 | None:intergenic |
| ATGTAGTTAATTCTGATGAA+AGG | 0.564478 | 3_4:+46144681 | Msa0503180:intron |
| ATGTAGTTAATTCTGATGAA+AGG | 0.564478 | 3_4:+46147316 | Msa0503180:intron |
| TCTTTCATCTTCAAACAACA+AGG | 0.578540 | 3_4:-46147177 | None:intergenic |
| TTACGTGAGAAAGCAGGACC+AGG | 0.592128 | 3_4:+46144443 | Msa0503180:CDS |
| TTACGTGAGAAAGCAGGACC+AGG | 0.592128 | 3_4:+46147078 | Msa0503180:CDS |
| TCTTTCAGCTTCAAACAACA+AGG | 0.592460 | 3_4:-46144542 | None:intergenic |
| CTTTCATCTTCAAACAACAA+GGG | 0.603932 | 3_4:-46147176 | None:intergenic |
| TACATTACAACTGAACGTTG+TGG | 0.619382 | 3_4:+46144253 | Msa0503180:CDS |
| CTTTCAGCTTCAAACAACAA+GGG | 0.622276 | 3_4:-46144541 | None:intergenic |
| CAAGCATCACAGAATCCACC+TGG | 0.622946 | 3_4:-46144461 | None:intergenic |
| CAAGCATCACAGAATCCACC+TGG | 0.622946 | 3_4:-46147096 | None:intergenic |
| GGTGGATTCTGTGATGCTTG+TGG | 0.625129 | 3_4:+46144464 | Msa0503180:CDS |
| GGTGGATTCTGTGATGCTTG+TGG | 0.625129 | 3_4:+46147099 | Msa0503180:CDS |
| CGTGAGAAAGCAGGACCAGG+TGG | 0.698735 | 3_4:+46144446 | Msa0503180:CDS |
| CGTGAGAAAGCAGGACCAGG+TGG | 0.698735 | 3_4:+46147081 | Msa0503180:CDS |
| GTAAGGATATGAATGTTGCG+AGG | 0.713114 | 3_4:+46144636 | Msa0503180:CDS |
| GTAAGGATATGAATGTTGCG+AGG | 0.713114 | 3_4:+46147271 | Msa0503180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAAAAAAAATATTACT+AGG | + | chr3_4:46146184-46146203 | Msa0503180:intron | 10.0% |
| !! | TTAATATAAGTTAATGTATT+TGG | + | chr3_4:46146589-46146608 | Msa0503180:intron | 10.0% |
| !!! | AAAAAGCATTTATTGAAAAA+TGG | - | chr3_4:46144419-46144438 | None:intergenic | 15.0% |
| !! | AAAGTTTGAATAATAATAAG+AGG | + | chr3_4:46144744-46144763 | Msa0503180:CDS | 15.0% |
| !! | TATTTGAATACAATCTTAAA+AGG | - | chr3_4:46145006-46145025 | None:intergenic | 15.0% |
| !! | ATTGTATTCAAATATTGTAA+TGG | + | chr3_4:46145012-46145031 | Msa0503180:intron | 15.0% |
| !!! | TTTTAATAAGTCTAATAGTT+TGG | - | chr3_4:46146220-46146239 | None:intergenic | 15.0% |
| !!! | ATATTTAAACCTTGAAATTT+TGG | - | chr3_4:46146492-46146511 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAATTAACTTTTT+AGG | + | chr3_4:46146801-46146820 | Msa0503180:intron | 15.0% |
| !!! | TAAACAAAAATCTACATTTT+AGG | - | chr3_4:46146890-46146909 | None:intergenic | 15.0% |
| !!! | AAAAAGCATTTATTGAAAAA+TGG | - | chr3_4:46144419-46144438 | None:intergenic | 15.0% |
| !! | AAAGTTTGAATAATAATAAG+AGG | + | chr3_4:46144744-46144763 | Msa0503180:CDS | 15.0% |
| !! | TTTATTGAAAAATGGATGAA+CGG | - | chr3_4:46144411-46144430 | None:intergenic | 20.0% |
| !!! | GATAAATTTTGTGATAAAGA+TGG | + | chr3_4:46144563-46144582 | Msa0503180:CDS | 20.0% |
| !! | AATAATAATAAGAGGTCAAA+AGG | + | chr3_4:46144752-46144771 | Msa0503180:CDS | 20.0% |
| !! | ATAATAATAAGAGGTCAAAA+GGG | + | chr3_4:46144753-46144772 | Msa0503180:CDS | 20.0% |
| !! | TAGTACTACCAATATAATTT+CGG | + | chr3_4:46144914-46144933 | Msa0503180:intron | 20.0% |
| !!! | TTAAGTTTTATAAATTTCCC+AGG | - | chr3_4:46145171-46145190 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGAATTGCAAAA+GGG | - | chr3_4:46145813-46145832 | None:intergenic | 20.0% |
| !! | TAATTAGGGTTTAATTATAG+TGG | - | chr3_4:46145951-46145970 | None:intergenic | 20.0% |
| !! | TAGTACTATTGTTGTAATTA+GGG | - | chr3_4:46145965-46145984 | None:intergenic | 20.0% |
| !! | TTAGTACTATTGTTGTAATT+AGG | - | chr3_4:46145966-46145985 | None:intergenic | 20.0% |
| !! | GAGATAAAGTAAATAAGAAA+AGG | + | chr3_4:46146052-46146071 | Msa0503180:intron | 20.0% |
| !! | AGAGAAAAAAAGAAAGAAAA+AGG | + | chr3_4:46146116-46146135 | Msa0503180:intron | 20.0% |
| !! | CATAAAATCTTGACATTTAA+TGG | - | chr3_4:46146311-46146330 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr3_4:46146791-46146810 | None:intergenic | 20.0% |
| !! | TTTATTGAAAAATGGATGAA+CGG | - | chr3_4:46144411-46144430 | None:intergenic | 20.0% |
| !!! | GATAAATTTTGTGATAAAGA+TGG | + | chr3_4:46144563-46144582 | Msa0503180:CDS | 20.0% |
| !! | AATAATAATAAGAGGTCAAA+AGG | + | chr3_4:46144752-46144771 | Msa0503180:CDS | 20.0% |
| !! | ATAATAATAAGAGGTCAAAA+GGG | + | chr3_4:46144753-46144772 | Msa0503180:CDS | 20.0% |
| ! | ATGTAGTTAATTCTGATGAA+AGG | + | chr3_4:46144681-46144700 | Msa0503180:intron | 25.0% |
| !! | AGTTGATACCGAAATTATAT+TGG | - | chr3_4:46144925-46144944 | None:intergenic | 25.0% |
| ! | GTACATGTGTATTTCTTTAA+TGG | - | chr3_4:46145074-46145093 | None:intergenic | 25.0% |
| ! | ATTTCCATGATTTCTTACAA+AGG | - | chr3_4:46145216-46145235 | None:intergenic | 25.0% |
| !!! | AAGATTTTTGGTGATAGTTA+CGG | - | chr3_4:46145572-46145591 | None:intergenic | 25.0% |
| ! | ACTATCACCAAAAATCTTAT+CGG | + | chr3_4:46145574-46145593 | Msa0503180:intron | 25.0% |
| ! | ATTGAGAATAGAGATTCTTA+AGG | - | chr3_4:46145653-46145672 | None:intergenic | 25.0% |
| ! | TCTATTCTCAATCATATCAT+TGG | + | chr3_4:46145661-46145680 | Msa0503180:intron | 25.0% |
| !! | GTTTTCAAAAGAATTGCAAA+AGG | - | chr3_4:46145814-46145833 | None:intergenic | 25.0% |
| !!! | TTGCAATTCTTTTGAAAACA+CGG | + | chr3_4:46145815-46145834 | Msa0503180:intron | 25.0% |
| ! | AAACAATCTGAAAGTAATCT+CGG | - | chr3_4:46145909-46145928 | None:intergenic | 25.0% |
| ! | ATAGTACTAAGACAACAATA+TGG | + | chr3_4:46145976-46145995 | Msa0503180:intron | 25.0% |
| ! | ATTTACTTTATCTCTTCTCA+TGG | - | chr3_4:46146046-46146065 | None:intergenic | 25.0% |
| ! | AAAAAAGAAAGAAAAAGGAG+TGG | + | chr3_4:46146121-46146140 | Msa0503180:intron | 25.0% |
| ! | AAAAAGAAAGAAAAAGGAGT+GGG | + | chr3_4:46146122-46146141 | Msa0503180:intron | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | chr3_4:46146826-46146845 | Msa0503180:intron | 25.0% |
| ! | ATGTAGTTAATTCTGATGAA+AGG | + | chr3_4:46144681-46144700 | Msa0503180:intron | 25.0% |
| ! | TTTTGTAAAGAGCTAGGTTA+TGG | + | chr3_4:46144299-46144318 | Msa0503180:CDS | 30.0% |
| TTACAATGAACACACTTTGA+TGG | - | chr3_4:46144620-46144639 | None:intergenic | 30.0% | |
| ATCAAAGTGTGTTCATTGTA+AGG | + | chr3_4:46144619-46144638 | Msa0503180:CDS | 30.0% | |
| GAAATTTACTGGCAAATTAG+TGG | + | chr3_4:46144793-46144812 | Msa0503180:CDS | 30.0% | |
| !!! | ACTAATCGACGTTGTTTTAA+TGG | + | chr3_4:46144823-46144842 | Msa0503180:CDS | 30.0% |
| !!! | AATGGATCCTACTAGTTTTA+TGG | + | chr3_4:46144841-46144860 | Msa0503180:CDS | 30.0% |
| ACGAGCTATAAGTTAACTTA+TGG | + | chr3_4:46144950-46144969 | Msa0503180:intron | 30.0% | |
| AATCATGGAAATCAACAACA+AGG | + | chr3_4:46145224-46145243 | Msa0503180:intron | 30.0% | |
| ATCATGGAAATCAACAACAA+GGG | + | chr3_4:46145225-46145244 | Msa0503180:intron | 30.0% | |
| ! | CGTTATTTCCATTATTGGAA+TGG | - | chr3_4:46145256-46145275 | None:intergenic | 30.0% |
| !! | TCTGAAGCAAATATTGACTT+AGG | + | chr3_4:46145504-46145523 | Msa0503180:intron | 30.0% |
| AGACAACACATAATTTATCC+TGG | + | chr3_4:46145870-46145889 | Msa0503180:intron | 30.0% | |
| ! | ATTATAGTGGAAAAATCCCT+TGG | - | chr3_4:46145938-46145957 | None:intergenic | 30.0% |
| ! | AAGACAACAATATGGATTGA+AGG | + | chr3_4:46145984-46146003 | Msa0503180:intron | 30.0% |
| ACTGTTGTAAATCGACAATT+TGG | + | chr3_4:46146420-46146439 | Msa0503180:intron | 30.0% | |
| ! | TGAAATTTTGGATGAAGATG+TGG | - | chr3_4:46146480-46146499 | None:intergenic | 30.0% |
| CATCTTCATCCAAAATTTCA+AGG | + | chr3_4:46146480-46146499 | Msa0503180:intron | 30.0% | |
| CTTTCATCTTCAAACAACAA+GGG | - | chr3_4:46147179-46147198 | None:intergenic | 30.0% | |
| TCTTTCATCTTCAAACAACA+AGG | - | chr3_4:46147180-46147199 | None:intergenic | 30.0% | |
| TTACAATGAACACACTTTGA+TGG | - | chr3_4:46144620-46144639 | None:intergenic | 30.0% | |
| ATCAAAGTGTGTTCATTGTA+AGG | + | chr3_4:46144619-46144638 | Msa0503180:CDS | 30.0% | |
| GAAATTTACTGGCAAATTAG+TGG | + | chr3_4:46144793-46144812 | Msa0503180:CDS | 30.0% | |
| !!! | ACTAATCGACGTTGTTTTAA+TGG | + | chr3_4:46144823-46144842 | Msa0503180:CDS | 30.0% |
| TACATTACAACTGAACGTTG+TGG | + | chr3_4:46144253-46144272 | Msa0503180:CDS | 35.0% | |
| TTGCAATTGCACATTCTGTA+TGG | - | chr3_4:46144367-46144386 | None:intergenic | 35.0% | |
| ! | TTTAAGTTACGTGAGAAAGC+AGG | + | chr3_4:46144437-46144456 | Msa0503180:intron | 35.0% |
| ! | GCTTGTGGAAAAGATTTGTT+AGG | + | chr3_4:46144479-46144498 | Msa0503180:CDS | 35.0% |
| CTTTCAGCTTCAAACAACAA+GGG | - | chr3_4:46144544-46144563 | None:intergenic | 35.0% | |
| TCTTTCAGCTTCAAACAACA+AGG | - | chr3_4:46144545-46144564 | None:intergenic | 35.0% | |
| CATATGACCAACCTTCAAAT+TGG | - | chr3_4:46144664-46144683 | None:intergenic | 35.0% | |
| ! | TGTTCATGTGAAGTGTTTCA+AGG | + | chr3_4:46144709-46144728 | Msa0503180:CDS | 35.0% |
| ! | TGTGAAGTGTTTCAAGGATA+TGG | + | chr3_4:46144715-46144734 | Msa0503180:CDS | 35.0% |
| CGTGCTATCATGAAATTTAC+TGG | + | chr3_4:46144782-46144801 | Msa0503180:CDS | 35.0% | |
| ATGGTAGCCATAAAACTAGT+AGG | - | chr3_4:46144851-46144870 | None:intergenic | 35.0% | |
| !!! | TAGTTTTATGGCTACCATTG+TGG | + | chr3_4:46144853-46144872 | Msa0503180:intron | 35.0% |
| CATGATTTCTTACAAAGGTG+TGG | - | chr3_4:46145211-46145230 | None:intergenic | 35.0% | |
| CACACCTTTGTAAGAAATCA+TGG | + | chr3_4:46145209-46145228 | Msa0503180:intron | 35.0% | |
| TCATGGAAATCAACAACAAG+GGG | + | chr3_4:46145226-46145245 | Msa0503180:intron | 35.0% | |
| ! | TGGGTCGTTATTTCCATTAT+TGG | - | chr3_4:46145261-46145280 | None:intergenic | 35.0% |
| ACTGTAGGTCTTCATTTGAT+GGG | - | chr3_4:46145280-46145299 | None:intergenic | 35.0% | |
| AACTGTAGGTCTTCATTTGA+TGG | - | chr3_4:46145281-46145300 | None:intergenic | 35.0% | |
| CTCATATGTCTATATAAGCG+TGG | + | chr3_4:46145416-46145435 | Msa0503180:intron | 35.0% | |
| GTCAATATTTGCTTCAGAGA+TGG | - | chr3_4:46145502-46145521 | None:intergenic | 35.0% | |
| ! | AGATGCTCCGATAAGATTTT+TGG | - | chr3_4:46145584-46145603 | None:intergenic | 35.0% |
| TATTCGATGGTAGACCAATA+TGG | - | chr3_4:46145611-46145630 | None:intergenic | 35.0% | |
| CAGGTACTATATCTATTCGA+TGG | - | chr3_4:46145624-46145643 | None:intergenic | 35.0% | |
| GAGATTCTTAAGGATGATTC+AGG | - | chr3_4:46145643-46145662 | None:intergenic | 35.0% | |
| ATCATATCATTGGCGTTAGA+AGG | + | chr3_4:46145671-46145690 | Msa0503180:intron | 35.0% | |
| ! | TTTTTCTCACCTTCAGTTAC+TGG | - | chr3_4:46145759-46145778 | None:intergenic | 35.0% |
| ! | ACAACAATATGGATTGAAGG+CGG | + | chr3_4:46145987-46146006 | Msa0503180:intron | 35.0% |
| ATTGAAGGCGGTTTCAAATA+GGG | + | chr3_4:46145999-46146018 | Msa0503180:intron | 35.0% | |
| TCTCTTAGAAATTTCAACGG+TGG | - | chr3_4:46146394-46146413 | None:intergenic | 35.0% | |
| GGCTCTCTTAGAAATTTCAA+CGG | - | chr3_4:46146397-46146416 | None:intergenic | 35.0% | |
| !! | TTGTCGATTTACAACAGTGT+AGG | - | chr3_4:46146418-46146437 | None:intergenic | 35.0% |
| CATGGATGTTCATACTTAGT+TGG | + | chr3_4:46146566-46146585 | Msa0503180:intron | 35.0% | |
| TGAACATTTATGTGTTGTGC+TGG | + | chr3_4:46146728-46146747 | Msa0503180:intron | 35.0% | |
| TGCTTATAATAGTGATCGGA+GGG | - | chr3_4:46146787-46146806 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGATCGG+AGG | - | chr3_4:46146788-46146807 | None:intergenic | 35.0% | |
| ATGGAGTATGTCAAGTCAAT+GGG | - | chr3_4:46146983-46147002 | None:intergenic | 35.0% | |
| TATGGAGTATGTCAAGTCAA+TGG | - | chr3_4:46146984-46147003 | None:intergenic | 35.0% | |
| TTGCAATTGCACATTCTGTA+TGG | - | chr3_4:46144367-46144386 | None:intergenic | 35.0% | |
| ! | TTTAAGTTACGTGAGAAAGC+AGG | + | chr3_4:46144437-46144456 | Msa0503180:intron | 35.0% |
| ! | GCTTGTGGAAAAGATTTGTT+AGG | + | chr3_4:46144479-46144498 | Msa0503180:CDS | 35.0% |
| CATATGACCAACCTTCAAAT+TGG | - | chr3_4:46144664-46144683 | None:intergenic | 35.0% | |
| ! | TGTTCATGTGAAGTGTTTCA+AGG | + | chr3_4:46144709-46144728 | Msa0503180:CDS | 35.0% |
| ! | TGTGAAGTGTTTCAAGGATA+TGG | + | chr3_4:46144715-46144734 | Msa0503180:CDS | 35.0% |
| CGTGCTATCATGAAATTTAC+TGG | + | chr3_4:46144782-46144801 | Msa0503180:CDS | 35.0% | |
| ! | TGCAGCTTTTGTAAAGAGCT+AGG | + | chr3_4:46144293-46144312 | Msa0503180:CDS | 40.0% |
| !!! | TGCAATTGCTGTTTTCACAG+TGG | - | chr3_4:46144334-46144353 | None:intergenic | 40.0% |
| CATAGTCTGTTTGGGAACAA+TGG | - | chr3_4:46144514-46144533 | None:intergenic | 40.0% | |
| GTGTAGAGCATAGTCTGTTT+GGG | - | chr3_4:46144522-46144541 | None:intergenic | 40.0% | |
| GTAAGGATATGAATGTTGCG+AGG | + | chr3_4:46144636-46144655 | Msa0503180:CDS | 40.0% | |
| TCAACACTAGATCAAGAACC+TGG | + | chr3_4:46145150-46145169 | Msa0503180:intron | 40.0% | |
| CAACACTAGATCAAGAACCT+GGG | + | chr3_4:46145151-46145170 | Msa0503180:intron | 40.0% | |
| TTGCATGCTGACATTAGTGT+GGG | - | chr3_4:46145341-46145360 | None:intergenic | 40.0% | |
| ACTAATGTCAGCATGCAACA+AGG | + | chr3_4:46145343-46145362 | Msa0503180:intron | 40.0% | |
| AGATGGTAAGAATGTTGGGA+AGG | - | chr3_4:46145380-46145399 | None:intergenic | 40.0% | |
| CGTCAGATGGTAAGAATGTT+GGG | - | chr3_4:46145384-46145403 | None:intergenic | 40.0% | |
| CCAACATTCTTACCATCTGA+CGG | + | chr3_4:46145382-46145401 | Msa0503180:intron | 40.0% | |
| GATCAATAATGACCGTCAGA+TGG | - | chr3_4:46145397-46145416 | None:intergenic | 40.0% | |
| !! | GCAAATATTGACTTAGGCGT+CGG | + | chr3_4:46145510-46145529 | Msa0503180:intron | 40.0% |
| !! | GGAGCGTGTTTCTATTTTAC+AGG | + | chr3_4:46145531-46145550 | Msa0503180:intron | 40.0% |
| ! | TTTGGTGATAGTTACGGTGA+GGG | - | chr3_4:46145566-46145585 | None:intergenic | 40.0% |
| !! | TTTTGGTGATAGTTACGGTG+AGG | - | chr3_4:46145567-46145586 | None:intergenic | 40.0% |
| TATCATTGGCGTTAGAAGGA+CGG | + | chr3_4:46145675-46145694 | Msa0503180:intron | 40.0% | |
| TTGTATCCACCAGTAACTGA+AGG | + | chr3_4:46145747-46145766 | Msa0503180:intron | 40.0% | |
| TTTGAAAACACGGATAGCAG+CGG | + | chr3_4:46145825-46145844 | Msa0503180:intron | 40.0% | |
| AGCGGAAAGTAGAGAGATAA+GGG | + | chr3_4:46145843-46145862 | Msa0503180:intron | 40.0% | |
| GAAAGTAATCTCGGATTGTG+AGG | - | chr3_4:46145900-46145919 | None:intergenic | 40.0% | |
| TCAGATTGTTTGCACTTCCA+AGG | + | chr3_4:46145918-46145937 | Msa0503180:intron | 40.0% | |
| CAGATTGTTTGCACTTCCAA+GGG | + | chr3_4:46145919-46145938 | Msa0503180:intron | 40.0% | |
| GATTGAAGGCGGTTTCAAAT+AGG | + | chr3_4:46145998-46146017 | Msa0503180:intron | 40.0% | |
| CACATCCGGTTCAATAATGT+GGG | - | chr3_4:46146368-46146387 | None:intergenic | 40.0% | |
| TCACATCCGGTTCAATAATG+TGG | - | chr3_4:46146369-46146388 | None:intergenic | 40.0% | |
| TCGTATCATTCTCACTTCTG+TGG | - | chr3_4:46146457-46146476 | None:intergenic | 40.0% | |
| ATTCTAGCACGTACTTGACA+TGG | + | chr3_4:46146548-46146567 | Msa0503180:intron | 40.0% | |
| CATAGTCTGTTTGGGAACAA+TGG | - | chr3_4:46144514-46144533 | None:intergenic | 40.0% | |
| GTGTAGAGCATAGTCTGTTT+GGG | - | chr3_4:46144522-46144541 | None:intergenic | 40.0% | |
| GTAAGGATATGAATGTTGCG+AGG | + | chr3_4:46144636-46144655 | Msa0503180:CDS | 40.0% | |
| GGTGTAGAGCATAGTCTGTT+TGG | - | chr3_4:46144523-46144542 | None:intergenic | 45.0% | |
| GTTGCGAGGAACCAATTTGA+AGG | + | chr3_4:46144650-46144669 | Msa0503180:CDS | 45.0% | |
| CGAGGAACCAATTTGAAGGT+TGG | + | chr3_4:46144654-46144673 | Msa0503180:intron | 45.0% | |
| ! | GAGGCGTTCTGTTTAACTGT+AGG | - | chr3_4:46145295-46145314 | None:intergenic | 45.0% |
| TGCTTTGTGCGAGTGTCTTT+GGG | - | chr3_4:46145317-46145336 | None:intergenic | 45.0% | |
| TTGCTTTGTGCGAGTGTCTT+TGG | - | chr3_4:46145318-46145337 | None:intergenic | 45.0% | |
| GTTGCATGCTGACATTAGTG+TGG | - | chr3_4:46145342-46145361 | None:intergenic | 45.0% | |
| CCGTCAGATGGTAAGAATGT+TGG | - | chr3_4:46145385-46145404 | None:intergenic | 45.0% | |
| ! | TTGGTGATAGTTACGGTGAG+GGG | - | chr3_4:46145565-46145584 | None:intergenic | 45.0% |
| TCGATGGTAGACCAATATGG+AGG | - | chr3_4:46145608-46145627 | None:intergenic | 45.0% | |
| ATCATTGGCGTTAGAAGGAC+GGG | + | chr3_4:46145676-46145695 | Msa0503180:intron | 45.0% | |
| TTCTCACCTTCAGTTACTGG+TGG | - | chr3_4:46145756-46145775 | None:intergenic | 45.0% | |
| CAGCGGAAAGTAGAGAGATA+AGG | + | chr3_4:46145842-46145861 | Msa0503180:intron | 45.0% | |
| GTTCAATAATGTGGGAGAGC+AGG | - | chr3_4:46146360-46146379 | None:intergenic | 45.0% | |
| GCTCTCCCACATTATTGAAC+CGG | + | chr3_4:46146360-46146379 | Msa0503180:intron | 45.0% | |
| TTCAACGGTGGTATCACATC+CGG | - | chr3_4:46146382-46146401 | None:intergenic | 45.0% | |
| GGTGTAGAGCATAGTCTGTT+TGG | - | chr3_4:46144523-46144542 | None:intergenic | 45.0% | |
| GTTGCGAGGAACCAATTTGA+AGG | + | chr3_4:46144650-46144669 | Msa0503180:CDS | 45.0% | |
| CGAGGAACCAATTTGAAGGT+TGG | + | chr3_4:46144654-46144673 | Msa0503180:intron | 45.0% | |
| !! | CTTATAAAATTATATTAAAA+AGG | - | chr3_4:46145051-46145070 | None:intergenic | 5.0% |
| !!! | TTATATTTTCTATATTAATA+AGG | - | chr3_4:46146156-46146175 | None:intergenic | 5.0% |
| !!! | TTTTTTTTCTTTTTAAATAT+TGG | - | chr3_4:46146955-46146974 | None:intergenic | 5.0% |
| !! | ATTTAAAAAGAAAAAAAAAT+AGG | + | chr3_4:46146957-46146976 | Msa0503180:intron | 5.0% |
| TTACGTGAGAAAGCAGGACC+AGG | + | chr3_4:46144443-46144462 | Msa0503180:CDS | 50.0% | |
| CAAGCATCACAGAATCCACC+TGG | - | chr3_4:46144464-46144483 | None:intergenic | 50.0% | |
| ! | GGTGGATTCTGTGATGCTTG+TGG | + | chr3_4:46144464-46144483 | Msa0503180:CDS | 50.0% |
| CTCGAAAAAACCTGAAGCCG+CGG | - | chr3_4:46144882-46144901 | None:intergenic | 50.0% | |
| GGGGTCAGCCATTCCAATAA+TGG | + | chr3_4:46145245-46145264 | Msa0503180:intron | 50.0% | |
| TTTGTGCGAGTGTCTTTGGG+AGG | - | chr3_4:46145314-46145333 | None:intergenic | 50.0% | |
| CGTGGCATCTCTGTCACATT+AGG | + | chr3_4:46145434-46145453 | Msa0503180:intron | 50.0% | |
| ! | CGGAGCATCTTCCTCCATAT+TGG | + | chr3_4:46145594-46145613 | Msa0503180:intron | 50.0% |
| !!! | GCAGGAGTGGTTTTTGGTGA+TGG | - | chr3_4:46146342-46146361 | None:intergenic | 50.0% |
| ATAATGTGGGAGAGCAGGAG+TGG | - | chr3_4:46146355-46146374 | None:intergenic | 50.0% | |
| ! | ATAGTGATCGGAGGGTGTAG+TGG | - | chr3_4:46146779-46146798 | None:intergenic | 50.0% |
| TTACGTGAGAAAGCAGGACC+AGG | + | chr3_4:46144443-46144462 | Msa0503180:CDS | 50.0% | |
| CAAGCATCACAGAATCCACC+TGG | - | chr3_4:46144464-46144483 | None:intergenic | 50.0% | |
| ! | GGTGGATTCTGTGATGCTTG+TGG | + | chr3_4:46144464-46144483 | Msa0503180:CDS | 50.0% |
| GTGATAGTTACGGTGAGGGG+TGG | - | chr3_4:46145562-46145581 | None:intergenic | 55.0% | |
| CTCGGATTGTGAGGTGAACC+AGG | - | chr3_4:46145891-46145910 | None:intergenic | 55.0% | |
| ! | GGGAGAGCAGGAGTGGTTTT+TGG | - | chr3_4:46146348-46146367 | None:intergenic | 55.0% |
| CGTGAGAAAGCAGGACCAGG+TGG | + | chr3_4:46144446-46144465 | Msa0503180:CDS | 60.0% | |
| GGCTACCATTGTGGAAGCCG+CGG | + | chr3_4:46144862-46144881 | Msa0503180:intron | 60.0% | |
| TGAAGCCGCGGCTTCCACAA+TGG | - | chr3_4:46144870-46144889 | None:intergenic | 60.0% | |
| ATTGTGGAAGCCGCGGCTTC+AGG | + | chr3_4:46144869-46144888 | Msa0503180:intron | 60.0% | |
| CGTGAGAAAGCAGGACCAGG+TGG | + | chr3_4:46144446-46144465 | Msa0503180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 46144239 | 46147488 | 46144239 | ID=Msa0503180;Name=Msa0503180 |
| chr3_4 | mRNA | 46144239 | 46147488 | 46144239 | ID=Msa0503180-mRNA-1;Parent=Msa0503180;Name=Msa0503180-mRNA-1;_AED=0.23;_eAED=0.27;_QI=0|0|0|1|0|0|5|0|327 |
| chr3_4 | exon | 46144239 | 46144409 | 46144239 | ID=Msa0503180-mRNA-1:exon:9864;Parent=Msa0503180-mRNA-1 |
| chr3_4 | exon | 46144443 | 46144671 | 46144443 | ID=Msa0503180-mRNA-1:exon:9865;Parent=Msa0503180-mRNA-1 |
| chr3_4 | exon | 46144687 | 46144871 | 46144687 | ID=Msa0503180-mRNA-1:exon:9866;Parent=Msa0503180-mRNA-1 |
| chr3_4 | exon | 46147078 | 46147306 | 46147078 | ID=Msa0503180-mRNA-1:exon:9867;Parent=Msa0503180-mRNA-1 |
| chr3_4 | exon | 46147322 | 46147488 | 46147322 | ID=Msa0503180-mRNA-1:exon:9868;Parent=Msa0503180-mRNA-1 |
| chr3_4 | CDS | 46144239 | 46144409 | 46144239 | ID=Msa0503180-mRNA-1:cds;Parent=Msa0503180-mRNA-1 |
| chr3_4 | CDS | 46144443 | 46144671 | 46144443 | ID=Msa0503180-mRNA-1:cds;Parent=Msa0503180-mRNA-1 |
| chr3_4 | CDS | 46144687 | 46144871 | 46144687 | ID=Msa0503180-mRNA-1:cds;Parent=Msa0503180-mRNA-1 |
| chr3_4 | CDS | 46147078 | 46147306 | 46147078 | ID=Msa0503180-mRNA-1:cds;Parent=Msa0503180-mRNA-1 |
| chr3_4 | CDS | 46147322 | 46147488 | 46147322 | ID=Msa0503180-mRNA-1:cds;Parent=Msa0503180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
