Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503600 | XP_013460014.1 | 94.643 | 224 | 7 | 1 | 1 | 224 | 1 | 219 | 1.54e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503600 | sp|P82413|RK19_SPIOL | 62.500 | 104 | 39 | 0 | 117 | 220 | 123 | 226 | 7.58e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503600 | A0A072V7A1 | 94.643 | 224 | 7 | 1 | 1 | 224 | 1 | 219 | 7.35e-148 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0503600 | Msa1106870 | 0.804544 | 2.053359e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503600 | MtrunA17_Chr3g0102051 | 94.643 | 224 | 7 | 1 | 1 | 224 | 1 | 219 | 1.42e-151 | 419 |
| Msa0503600 | MtrunA17_Chr5g0399711 | 36.321 | 212 | 106 | 3 | 10 | 220 | 39 | 222 | 3.13e-39 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503600 | AT5G11750.1 | 73.377 | 154 | 33 | 3 | 73 | 224 | 80 | 227 | 8.67e-74 | 223 |
| Msa0503600 | AT4G11630.1 | 72.848 | 151 | 33 | 2 | 74 | 224 | 81 | 223 | 4.61e-73 | 221 |
| Msa0503600 | AT5G11750.2 | 65.896 | 173 | 37 | 4 | 73 | 224 | 80 | 251 | 2.27e-71 | 218 |
| Msa0503600 | AT1G24240.1 | 71.154 | 156 | 37 | 2 | 69 | 224 | 73 | 220 | 2.08e-64 | 199 |
| Msa0503600 | AT4G17560.1 | 59.615 | 104 | 42 | 0 | 117 | 220 | 115 | 218 | 1.37e-36 | 128 |
| Msa0503600 | AT5G47190.1 | 58.654 | 104 | 43 | 0 | 117 | 220 | 119 | 222 | 3.58e-36 | 127 |
| Msa0503600 | AT1G24240.2 | 60.759 | 79 | 23 | 2 | 69 | 147 | 73 | 143 | 5.70e-22 | 88.6 |
Find 64 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGTGTTTCTATTATAAA+AGG | 0.194759 | 3_4:-46999554 | Msa0503600:CDS |
| TTGATGCGGGGAGGCAATTC+AGG | 0.268789 | 3_4:+46999919 | None:intergenic |
| CTTTCGATCATATCGTGTTT+TGG | 0.276614 | 3_4:-46998626 | Msa0503600:three_prime_UTR |
| ATCCCTCAGGTAGTAGAGTT+TGG | 0.318153 | 3_4:+46998837 | None:intergenic |
| ACCTTTATCTCCTTTATGTT+AGG | 0.356884 | 3_4:+46998886 | None:intergenic |
| ACCTAACATAAAGGAGATAA+AGG | 0.358575 | 3_4:-46998887 | Msa0503600:CDS |
| CGGGGAGGCAATTCAGGTTC+TGG | 0.369112 | 3_4:+46999925 | None:intergenic |
| ACACTACATTCAGACTTAGA+AGG | 0.398714 | 3_4:-46999499 | Msa0503600:CDS |
| GAAGGATGGTAGCTGGGGTT+GGG | 0.398853 | 3_4:-46999481 | Msa0503600:CDS |
| TTGTCCCTCATTTCCGAAGC+AGG | 0.430695 | 3_4:-46999999 | Msa0503600:CDS |
| GAAAGAGATTTGGCGGAGAT+AGG | 0.431305 | 3_4:+47003360 | None:intergenic |
| ATATAACCAGGCTTTATATC+AGG | 0.433635 | 3_4:+46999716 | None:intergenic |
| AGAAGGATGGTAGCTGGGGT+TGG | 0.434672 | 3_4:-46999482 | Msa0503600:CDS |
| TCTAGAGTTGAGTCTGGTAA+TGG | 0.441522 | 3_4:-47000060 | Msa0503600:CDS |
| CGGTAGACATAAACCTGCTT+CGG | 0.445201 | 3_4:+46999986 | None:intergenic |
| AGAATGCATGTGAATACATA+TGG | 0.454243 | 3_4:+46998727 | None:intergenic |
| GACTTAGAAGGATGGTAGCT+GGG | 0.461287 | 3_4:-46999487 | Msa0503600:CDS |
| GGCGTGTTTCTATTATAAAA+GGG | 0.465947 | 3_4:-46999553 | Msa0503600:CDS |
| TTACGGTGGAGAAAGAGATT+TGG | 0.468649 | 3_4:+47003350 | None:intergenic |
| ACGAATCAGCCATGGCTTCA+CGG | 0.473904 | 3_4:-47003447 | Msa0503600:exon |
| TAATCTCTTGAATTTGATGC+GGG | 0.475265 | 3_4:+46999906 | None:intergenic |
| GAGAGGAAGAAGAAAAGCTT+TGG | 0.486437 | 3_4:+47003471 | None:intergenic |
| GTATTCTCTAGAGTTGAGTC+TGG | 0.494132 | 3_4:-47000066 | Msa0503600:CDS |
| AGACTTAGAAGGATGGTAGC+TGG | 0.494744 | 3_4:-46999488 | Msa0503600:CDS |
| AGACAAAGAAGCAGTGGAGG+AGG | 0.496174 | 3_4:-46999759 | Msa0503600:CDS |
| ATCTCTCACTCGCTCTTCAT+CGG | 0.497958 | 3_4:-47003398 | Msa0503600:CDS |
| CGGTGGAGAAAGAGATTTGG+CGG | 0.501530 | 3_4:+47003353 | None:intergenic |
| ATAAACCTGCTTCGGAAATG+AGG | 0.502963 | 3_4:+46999994 | None:intergenic |
| TAAAAGGGATTGTTATTGCA+AGG | 0.505129 | 3_4:-46999538 | Msa0503600:CDS |
| AACCGCGAGGCACATTATGC+AGG | 0.510916 | 3_4:-46999878 | Msa0503600:CDS |
| ACAGAACCATGCTGAAATGA+AGG | 0.517294 | 3_4:+47000024 | None:intergenic |
| CAGGTATTCACCTAACATAA+AGG | 0.524817 | 3_4:-46998896 | Msa0503600:CDS |
| GACACTAGTCTTCAGCCTGT+TGG | 0.531116 | 3_4:-46998788 | Msa0503600:three_prime_UTR |
| CTAATCTCTTGAATTTGATG+CGG | 0.543771 | 3_4:+46999905 | None:intergenic |
| TCATATATCATAGGAAGTAC+CGG | 0.546725 | 3_4:-46999585 | Msa0503600:intron |
| GAGGTACCTGATATAAAGCC+TGG | 0.550742 | 3_4:-46999722 | Msa0503600:CDS |
| GAAACACGCCTCTTGTTCTC+CGG | 0.554578 | 3_4:+46999566 | None:intergenic |
| AGGCAATTCAGGTTCTGGTA+AGG | 0.561434 | 3_4:+46999930 | None:intergenic |
| CAAAACACGATATGATCGAA+AGG | 0.561824 | 3_4:+46998627 | None:intergenic |
| TCCTCTCTACGAATCAGCCA+TGG | 0.566678 | 3_4:-47003455 | Msa0503600:exon |
| TTTAGACAAAGAAGCAGTGG+AGG | 0.569964 | 3_4:-46999762 | Msa0503600:CDS |
| GTTATTGCAAGGCGTAATTG+TGG | 0.573207 | 3_4:-46999527 | Msa0503600:CDS |
| GAGATTTGGCGGAGATAGGT+CGG | 0.575095 | 3_4:+47003364 | None:intergenic |
| GAAGAGTCTCCGTGAAGCCA+TGG | 0.578236 | 3_4:+47003438 | None:intergenic |
| AAAACACGATATGATCGAAA+GGG | 0.580980 | 3_4:+46998628 | None:intergenic |
| TAAACCTGCTTCGGAAATGA+GGG | 0.601675 | 3_4:+46999995 | None:intergenic |
| AGGAAGTACCGGAGAACAAG+AGG | 0.604082 | 3_4:-46999574 | Msa0503600:CDS |
| CTAGAGAATACATTCGTCTG+AGG | 0.606666 | 3_4:+47000078 | None:intergenic |
| GCCATGGCTGATTCGTAGAG+AGG | 0.609430 | 3_4:+47003454 | None:intergenic |
| GGAGGTGAAAGAACAGAGAG+AGG | 0.615909 | 3_4:-46999741 | Msa0503600:CDS |
| CTCTTGAATTTGATGCGGGG+AGG | 0.619557 | 3_4:+46999910 | None:intergenic |
| TTGAGCTGCACAATATAACC+AGG | 0.624977 | 3_4:+46999704 | None:intergenic |
| AGATTGCCTTCATTTCAGCA+TGG | 0.626288 | 3_4:-47000030 | Msa0503600:CDS |
| AGAATCAACAGAATTTGTCT+CGG | 0.631893 | 3_4:+46999966 | None:intergenic |
| TACATTCAGACTTAGAAGGA+TGG | 0.634854 | 3_4:-46999495 | Msa0503600:CDS |
| GAGCCAAACTCTACTACCTG+AGG | 0.635973 | 3_4:-46998840 | Msa0503600:CDS |
| AAGAGCGAGTGAGAGATGAA+CGG | 0.636322 | 3_4:+47003404 | None:intergenic |
| ACTTAGAAGGATGGTAGCTG+GGG | 0.639779 | 3_4:-46999486 | Msa0503600:CDS |
| AGCGAGTGAGAGATGAACGG+AGG | 0.664015 | 3_4:+47003407 | None:intergenic |
| AGCCAAACTCTACTACCTGA+GGG | 0.676552 | 3_4:-46998839 | Msa0503600:CDS |
| AATCTCTTGAATTTGATGCG+GGG | 0.693261 | 3_4:+46999907 | None:intergenic |
| TGCCTGCATAATGTGCCTCG+CGG | 0.696013 | 3_4:+46999876 | None:intergenic |
| TTATATTGTGCAGCTCAAAG+TGG | 0.710180 | 3_4:-46999699 | Msa0503600:intron |
| AGAGATTAGATAAAACCGCG+AGG | 0.790741 | 3_4:-46999891 | Msa0503600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATTTAATAAAGTG+TGG | + | chr3_4:46999932-46999951 | None:intergenic | 10.0% |
| !!! | TGTATTTTGTTTTAAATAAA+GGG | - | chr3_4:47002167-47002186 | Msa0503600:intron | 10.0% |
| !!! | AAAAATGTAATAATTTTAGA+TGG | + | chr3_4:47003355-47003374 | None:intergenic | 10.0% |
| !! | ACATAATTATAAGCAAAATT+AGG | - | chr3_4:47000191-47000210 | Msa0503600:intron | 15.0% |
| !!! | AATTTATTTTCTCTAAAGTT+TGG | - | chr3_4:47000584-47000603 | Msa0503600:intron | 15.0% |
| !!! | ATTTATTTTCTCTAAAGTTT+GGG | - | chr3_4:47000585-47000604 | Msa0503600:intron | 15.0% |
| !! | TTATTTATGGGATTATTTAA+TGG | - | chr3_4:47000677-47000696 | Msa0503600:intron | 15.0% |
| !!! | TGCAATTTTTCATTATAAAA+CGG | - | chr3_4:47000777-47000796 | Msa0503600:intron | 15.0% |
| !!! | CTGTATTTTGTTTTAAATAA+AGG | - | chr3_4:47002166-47002185 | Msa0503600:intron | 15.0% |
| !! | TAATCATTTGTAAAAATTGT+TGG | - | chr3_4:47002202-47002221 | Msa0503600:intron | 15.0% |
| !!! | TTCTTTTTATTCTCTTTTTT+GGG | + | chr3_4:47002786-47002805 | None:intergenic | 15.0% |
| !!! | ATTCTTTTTATTCTCTTTTT+TGG | + | chr3_4:47002787-47002806 | None:intergenic | 15.0% |
| !! | TTATTTGAATTATTGTTATG+AGG | - | chr3_4:47002843-47002862 | Msa0503600:intron | 15.0% |
| !!! | TTAATAATTTTGTTATACTC+AGG | - | chr3_4:47003255-47003274 | Msa0503600:intron | 15.0% |
| !!! | CTAGATTCTTTATTTTAATA+TGG | - | chr3_4:47003322-47003341 | Msa0503600:intron | 15.0% |
| !! | TTTCATGCTTATAGAAAAAT+TGG | - | chr3_4:46998790-46998809 | Msa0503600:three_prime_UTR | 20.0% |
| !! | TTCATGCTTATAGAAAAATT+GGG | - | chr3_4:46998791-46998810 | Msa0503600:three_prime_UTR | 20.0% |
| !! | TATAAACACTTATAGCATAA+AGG | - | chr3_4:46999019-46999038 | Msa0503600:intron | 20.0% |
| !!! | GAATAACATAACAAGATTTT+TGG | - | chr3_4:46999164-46999183 | Msa0503600:intron | 20.0% |
| !!! | TTGTATCATTTTCACAAATT+GGG | - | chr3_4:46999386-46999405 | Msa0503600:intron | 20.0% |
| !!! | AGATGTTTTATGTAGAAAAA+TGG | + | chr3_4:46999746-46999765 | None:intergenic | 20.0% |
| !! | TAACATTAAATCCAAAGAAA+CGG | + | chr3_4:47000807-47000826 | None:intergenic | 20.0% |
| !! | TTTGGATTTAATGTTACATT+AGG | - | chr3_4:47000811-47000830 | Msa0503600:intron | 20.0% |
| !!! | AGATGTTTTTGTTAAAGAAA+GGG | - | chr3_4:47001136-47001155 | Msa0503600:intron | 20.0% |
| !! | AGATATACATAAATTATGGA+AGG | + | chr3_4:47002584-47002603 | None:intergenic | 20.0% |
| !! | AAGCAGATATACATAAATTA+TGG | + | chr3_4:47002588-47002607 | None:intergenic | 20.0% |
| !!! | TCTCTATTTTTTGACTTTTA+AGG | - | chr3_4:47002715-47002734 | Msa0503600:intron | 20.0% |
| !!! | TATTTTTTGACTTTTAAGGA+GGG | - | chr3_4:47002719-47002738 | Msa0503600:intron | 20.0% |
| !!! | AGAATATGATGATGAATTTA+TGG | - | chr3_4:47002817-47002836 | Msa0503600:intron | 20.0% |
| !!! | GTATTTTCTAAAGTAACATA+AGG | + | chr3_4:47002944-47002963 | None:intergenic | 20.0% |
| !! | AAGCACAATTAACTTTAAAT+TGG | + | chr3_4:47003046-47003065 | None:intergenic | 20.0% |
| !!! | TAGTGTCAGTTTTTATTTTA+GGG | + | chr3_4:47003208-47003227 | None:intergenic | 20.0% |
| ! | TCACATAAACTAGTTACATT+CGG | - | chr3_4:46998739-46998758 | Msa0503600:three_prime_UTR | 25.0% |
| ! | CTTATAGAAAAATTGGGATT+CGG | - | chr3_4:46998797-46998816 | Msa0503600:exon | 25.0% |
| ! | TTATAGAAAAATTGGGATTC+GGG | - | chr3_4:46998798-46998817 | Msa0503600:exon | 25.0% |
| ! | GATTAAAAAACTTTGCACAT+AGG | + | chr3_4:46998974-46998993 | None:intergenic | 25.0% |
| ! | TGAAAACCATTTAAACACTT+AGG | + | chr3_4:46999102-46999121 | None:intergenic | 25.0% |
| !! | ATGGTTTTCAATGATAACTA+TGG | - | chr3_4:46999112-46999131 | Msa0503600:intron | 25.0% |
| !! | TGGTTTTCAATGATAACTAT+GGG | - | chr3_4:46999113-46999132 | Msa0503600:intron | 25.0% |
| ! | TTGTTAAAATCGTATAGTTG+AGG | - | chr3_4:46999142-46999161 | Msa0503600:intron | 25.0% |
| !! | GTTGTATCATTTTCACAAAT+TGG | - | chr3_4:46999385-46999404 | Msa0503600:intron | 25.0% |
| !! | TACTGATTATTTGATAAGGA+TGG | - | chr3_4:46999474-46999493 | Msa0503600:CDS | 25.0% |
| ! | TATTAATGAGGCAATTGATT+TGG | - | chr3_4:46999498-46999517 | Msa0503600:CDS | 25.0% |
| !!! | CTATTTTTATCTGAAGACAT+TGG | + | chr3_4:46999651-46999670 | None:intergenic | 25.0% |
| ! | TACAAACAGAAACAATACTT+TGG | + | chr3_4:46999880-46999899 | None:intergenic | 25.0% |
| !!! | AATCTGTTGATAATGCAAAA+TGG | - | chr3_4:46999973-46999992 | Msa0503600:CDS | 25.0% |
| ! | ATAATGAAGTAAACGATGAA+GGG | + | chr3_4:47000007-47000026 | None:intergenic | 25.0% |
| ! | TATAATGAAGTAAACGATGA+AGG | + | chr3_4:47000008-47000027 | None:intergenic | 25.0% |
| ! | TCATCGTTTACTTCATTATA+TGG | - | chr3_4:47000008-47000027 | Msa0503600:CDS | 25.0% |
| !! | ACATAAGACTTTTCTTTTAG+AGG | - | chr3_4:47000060-47000079 | Msa0503600:CDS | 25.0% |
| ! | GATTATGACAAAAGATTACA+TGG | + | chr3_4:47000142-47000161 | None:intergenic | 25.0% |
| ! | TCAAAGAAAGTTCATGTATT+TGG | + | chr3_4:47000253-47000272 | None:intergenic | 25.0% |
| ! | CCTTAATTATAAGCAAAAGT+AGG | + | chr3_4:47000276-47000295 | None:intergenic | 25.0% |
| !!! | CCTACTTTTGCTTATAATTA+AGG | - | chr3_4:47000273-47000292 | Msa0503600:intron | 25.0% |
| ! | AACAATCTCAGGTTATTTAT+GGG | - | chr3_4:47000665-47000684 | Msa0503600:intron | 25.0% |
| ! | TTTATGGGATTATTTAATGG+AGG | - | chr3_4:47000680-47000699 | Msa0503600:intron | 25.0% |
| ! | AACTTAAATTTAGCATGCTT+GGG | - | chr3_4:47000714-47000733 | Msa0503600:intron | 25.0% |
| ! | AACATTAAATCCAAAGAAAC+GGG | + | chr3_4:47000806-47000825 | None:intergenic | 25.0% |
| !!! | TTGTTTCATTTTTTCATGCT+TGG | - | chr3_4:46998779-46998798 | Msa0503600:three_prime_UTR | 25.0% |
| !!! | TGTTTCATTTTTTCATGCTT+GGG | - | chr3_4:46998780-46998799 | Msa0503600:three_prime_UTR | 25.0% |
| ! | CATAAACACTTATAGCATAA+AGG | - | chr3_4:47001093-47001112 | Msa0503600:intron | 25.0% |
| !!! | GAGATGTTTTTGTTAAAGAA+AGG | - | chr3_4:47001135-47001154 | Msa0503600:intron | 25.0% |
| !!! | GATGTTTTTGTTAAAGAAAG+GGG | - | chr3_4:47001137-47001156 | Msa0503600:intron | 25.0% |
| !! | GTTTTCAATCTGATAAGTAT+GGG | - | chr3_4:47001179-47001198 | Msa0503600:intron | 25.0% |
| !! | TTTTCAATCTGATAAGTATG+GGG | - | chr3_4:47001180-47001199 | Msa0503600:intron | 25.0% |
| ! | AAAAAGTTGTTTATCCAAGT+TGG | - | chr3_4:47001848-47001867 | Msa0503600:intron | 25.0% |
| ! | AAAAGTTGTTTATCCAAGTT+GGG | - | chr3_4:47001849-47001868 | Msa0503600:intron | 25.0% |
| ! | TTTGTTACAATTTCTTGTGT+AGG | - | chr3_4:47001897-47001916 | Msa0503600:intron | 25.0% |
| !! | CTTCTTTGTCTAAAATCTAA+AGG | + | chr3_4:47002241-47002260 | None:intergenic | 25.0% |
| ! | ACTGTTATGTCATATATCAT+AGG | - | chr3_4:47002415-47002434 | Msa0503600:intron | 25.0% |
| !!! | ATATTCATGCTATTTTGAAC+TGG | - | chr3_4:47002668-47002687 | Msa0503600:intron | 25.0% |
| ! | AAAATAGAGACATAAATCAC+AGG | + | chr3_4:47002705-47002724 | None:intergenic | 25.0% |
| !!! | CTATTTTTTGACTTTTAAGG+AGG | - | chr3_4:47002718-47002737 | Msa0503600:intron | 25.0% |
| !!! | CTAGTGTCAGTTTTTATTTT+AGG | + | chr3_4:47003209-47003228 | None:intergenic | 25.0% |
| ! | TTAATCACAAAAATTCCAAC+AGG | + | chr3_4:47003239-47003258 | None:intergenic | 25.0% |
| ! | CTTCAAAAAAATTCAGAGTT+GGG | + | chr3_4:47003463-47003482 | None:intergenic | 25.0% |
| ! | TCTTCAAAAAAATTCAGAGT+TGG | + | chr3_4:47003464-47003483 | None:intergenic | 25.0% |
| !! | AAATGAAGTGAAAGTGCTTA+CGG | + | chr3_4:46998679-46998698 | None:intergenic | 30.0% |
| CTTATTTCCATAAGCTCTTT+AGG | - | chr3_4:46998924-46998943 | Msa0503600:intron | 30.0% | |
| !!! | GCTGTTTTTGTTAAAGAAAG+AGG | - | chr3_4:46999065-46999084 | Msa0503600:intron | 30.0% |
| ACGTTTCCTAAGTGTTTAAA+TGG | - | chr3_4:46999093-46999112 | Msa0503600:intron | 30.0% | |
| ! | GGTTTTCAATGATAACTATG+GGG | - | chr3_4:46999114-46999133 | Msa0503600:intron | 30.0% |
| ! | GTTTTCAATGATAACTATGG+GGG | - | chr3_4:46999115-46999134 | Msa0503600:intron | 30.0% |
| ! | TTTTCAATGATAACTATGGG+GGG | - | chr3_4:46999116-46999135 | Msa0503600:intron | 30.0% |
| !!! | GATTTTTGGTTTGATGAACT+TGG | - | chr3_4:46999178-46999197 | Msa0503600:intron | 30.0% |
| GGAGTATAATTAGTGGTATT+AGG | - | chr3_4:46999318-46999337 | Msa0503600:intron | 30.0% | |
| GTACTTTATGATCATGAATG+AGG | - | chr3_4:46999352-46999371 | Msa0503600:intron | 30.0% | |
| ! | TATCATTTTCACAAATTGGG+AGG | - | chr3_4:46999389-46999408 | Msa0503600:intron | 30.0% |
| ! | ATTGGGAGGAAAGAAAATTT+TGG | - | chr3_4:46999403-46999422 | Msa0503600:intron | 30.0% |
| AGTGCAGTATAATTTATGCA+TGG | - | chr3_4:46999427-46999446 | Msa0503600:intron | 30.0% | |
| GTATAATTTATGCATGGTAG+TGG | - | chr3_4:46999433-46999452 | Msa0503600:intron | 30.0% | |
| !! | GTGGTACTGATTATTTGATA+AGG | - | chr3_4:46999470-46999489 | Msa0503600:CDS | 30.0% |
| GATAAGGATGGTTATTAATG+AGG | - | chr3_4:46999486-46999505 | Msa0503600:CDS | 30.0% | |
| TATTCTGATTCCATTACAGA+GGG | - | chr3_4:46999623-46999642 | Msa0503600:intron | 30.0% | |
| AAACTGAAGTTGAAACCAAA+TGG | + | chr3_4:46999803-46999822 | None:intergenic | 30.0% | |
| ! | TCTATAGCCTTCTTATTTGT+TGG | - | chr3_4:46999840-46999859 | Msa0503600:intron | 30.0% |
| CAAACTACCAACAAATAAGA+AGG | + | chr3_4:46999850-46999869 | None:intergenic | 30.0% | |
| TAATGAAGTAAACGATGAAG+GGG | + | chr3_4:47000006-47000025 | None:intergenic | 30.0% | |
| AGCAAAATTAGGTCAAAGAA+AGG | - | chr3_4:47000202-47000221 | Msa0503600:intron | 30.0% | |
| TCAAAGAAAGGTAACGTATT+TGG | - | chr3_4:47000214-47000233 | Msa0503600:intron | 30.0% | |
| !! | AACGTATTTGGTTCAAGTTT+TGG | - | chr3_4:47000226-47000245 | Msa0503600:intron | 30.0% |
| ATTCCAAAGCATATGCAAAA+GGG | + | chr3_4:47000377-47000396 | None:intergenic | 30.0% | |
| AATTCCAAAGCATATGCAAA+AGG | + | chr3_4:47000378-47000397 | None:intergenic | 30.0% | |
| !! | TTTGCATATGCTTTGGAATT+TGG | - | chr3_4:47000378-47000397 | Msa0503600:intron | 30.0% |
| !! | TTGCATATGCTTTGGAATTT+GGG | - | chr3_4:47000379-47000398 | Msa0503600:intron | 30.0% |
| TTTACTTTCATAGACTCTCT+AGG | - | chr3_4:47000517-47000536 | Msa0503600:intron | 30.0% | |
| !!! | TATTTTCTCTAAAGTTTGGG+TGG | - | chr3_4:47000588-47000607 | Msa0503600:intron | 30.0% |
| ! | AGTGTGTTTGGTTTAACATA+AGG | - | chr3_4:47000628-47000647 | Msa0503600:intron | 30.0% |
| GTTTAACATAAGGTAAGAGT+AGG | - | chr3_4:47000638-47000657 | Msa0503600:intron | 30.0% | |
| CAACAATCTCAGGTTATTTA+TGG | - | chr3_4:47000664-47000683 | Msa0503600:intron | 30.0% | |
| ATTTAATGGAGGAAAAGAAG+TGG | - | chr3_4:47000691-47000710 | Msa0503600:intron | 30.0% | |
| GAACTTAAATTTAGCATGCT+TGG | - | chr3_4:47000713-47000732 | Msa0503600:intron | 30.0% | |
| !!! | ATTTTTTCATGCTTGGGTTA+CGG | - | chr3_4:47000858-47000877 | Msa0503600:intron | 30.0% |
| CTTATTTGCATAAGCTCTTT+AGG | - | chr3_4:47000985-47001004 | Msa0503600:intron | 30.0% | |
| ! | GGTTTTCAATCTGATAAGTA+TGG | - | chr3_4:47001178-47001197 | Msa0503600:intron | 30.0% |
| TTTCAATCTGATAAGTATGG+GGG | - | chr3_4:47001181-47001200 | Msa0503600:intron | 30.0% | |
| ! | GGTTGTTTGTTAAAATCGTA+TGG | - | chr3_4:47001202-47001221 | Msa0503600:intron | 30.0% |
| TTGTTAAAATCGTATGGTTG+AGG | - | chr3_4:47001208-47001227 | Msa0503600:intron | 30.0% | |
| AGGAAAAACATAACAAGCTT+AGG | - | chr3_4:47001228-47001247 | Msa0503600:intron | 30.0% | |
| TACATTCGAAAGTGATTTCT+TGG | - | chr3_4:47001308-47001327 | Msa0503600:intron | 30.0% | |
| TCAAATACTTAGTTGCACAA+TGG | - | chr3_4:47001359-47001378 | Msa0503600:intron | 30.0% | |
| TAAACTGCACGATGATAATA+TGG | - | chr3_4:47001428-47001447 | Msa0503600:intron | 30.0% | |
| GTTTCATTAGTTGAGCAATT+AGG | - | chr3_4:47001688-47001707 | Msa0503600:intron | 30.0% | |
| TGATGTAATTATCTGCATAC+TGG | - | chr3_4:47001729-47001748 | Msa0503600:intron | 30.0% | |
| GATGTAATTATCTGCATACT+GGG | - | chr3_4:47001730-47001749 | Msa0503600:intron | 30.0% | |
| ! | AATTTTTCGTTGGATCTTTG+TGG | - | chr3_4:47001760-47001779 | Msa0503600:intron | 30.0% |
| ATATACAACCAACAAAAGCA+TGG | + | chr3_4:47001803-47001822 | None:intergenic | 30.0% | |
| AGAATCAACAGAATTTGTCT+CGG | + | chr3_4:47002046-47002065 | None:intergenic | 30.0% | |
| TAATCTCTTGAATTTGATGC+GGG | + | chr3_4:47002106-47002125 | None:intergenic | 30.0% | |
| CTAATCTCTTGAATTTGATG+CGG | + | chr3_4:47002107-47002126 | None:intergenic | 30.0% | |
| ! | ATATAACCAGGCTTTATATC+AGG | + | chr3_4:47002296-47002315 | None:intergenic | 30.0% |
| ! | TCATATATCATAGGAAGTAC+CGG | - | chr3_4:47002424-47002443 | Msa0503600:intron | 30.0% |
| ! | AGGCGTGTTTCTATTATAAA+AGG | - | chr3_4:47002455-47002474 | Msa0503600:intron | 30.0% |
| ! | GGCGTGTTTCTATTATAAAA+GGG | - | chr3_4:47002456-47002475 | Msa0503600:intron | 30.0% |
| ! | TAAAAGGGATTGTTATTGCA+AGG | - | chr3_4:47002471-47002490 | Msa0503600:intron | 30.0% |
| ! | GGTCTGTTTGAATAAGTTTT+TGG | + | chr3_4:47002923-47002942 | None:intergenic | 30.0% |
| !! | ATAAGAGTATCAATTAGCTC+AGG | + | chr3_4:47003091-47003110 | None:intergenic | 30.0% |
| CTAATTGATACTCTTATGAC+AGG | - | chr3_4:47003094-47003113 | Msa0503600:intron | 30.0% | |
| ACCTAACATAAAGGAGATAA+AGG | - | chr3_4:47003122-47003141 | Msa0503600:intron | 30.0% | |
| ACCTTTATCTCCTTTATGTT+AGG | + | chr3_4:47003126-47003145 | None:intergenic | 30.0% | |
| AGAATGCATGTGAATACATA+TGG | + | chr3_4:47003285-47003304 | None:intergenic | 30.0% | |
| AAAACACGATATGATCGAAA+GGG | + | chr3_4:47003384-47003403 | None:intergenic | 30.0% | |
| AAGCTATCCTAAAGAGCTTA+TGG | + | chr3_4:46998934-46998953 | None:intergenic | 35.0% | |
| !! | AAGCTCTTTAGGATAGCTTA+TGG | - | chr3_4:46998935-46998954 | Msa0503600:intron | 35.0% |
| ! | ATGTGGTGGAGTATAATTAG+TGG | - | chr3_4:46999311-46999330 | Msa0503600:intron | 35.0% |
| !! | ATGAGGCAATTGATTTGGAA+TGG | - | chr3_4:46999503-46999522 | Msa0503600:CDS | 35.0% |
| !! | AATTGATTTGGAATGGATCC+AGG | - | chr3_4:46999510-46999529 | Msa0503600:CDS | 35.0% |
| ! | AATGGATCCAGGATTAGTAA+GGG | - | chr3_4:46999521-46999540 | Msa0503600:CDS | 35.0% |
| ACATTCTTGTTGGAGTTAAG+AGG | - | chr3_4:46999576-46999595 | Msa0503600:intron | 35.0% | |
| GTATTCTGATTCCATTACAG+AGG | - | chr3_4:46999622-46999641 | Msa0503600:intron | 35.0% | |
| ATTCTGATTCCATTACAGAG+GGG | - | chr3_4:46999624-46999643 | Msa0503600:intron | 35.0% | |
| TGCTTAGATATATCGCCATT+TGG | - | chr3_4:46999785-46999804 | Msa0503600:intron | 35.0% | |
| AAGGCTATAGATGTGAAATC+GGG | + | chr3_4:46999831-46999850 | None:intergenic | 35.0% | |
| GAAGGCTATAGATGTGAAAT+CGG | + | chr3_4:46999832-46999851 | None:intergenic | 35.0% | |
| TCTTGAGTAATGTATGCTCT+TGG | - | chr3_4:47000091-47000110 | Msa0503600:CDS | 35.0% | |
| CTTGAGTAATGTATGCTCTT+GGG | - | chr3_4:47000092-47000111 | Msa0503600:CDS | 35.0% | |
| TTGAGTAATGTATGCTCTTG+GGG | - | chr3_4:47000093-47000112 | Msa0503600:CDS | 35.0% | |
| GAGATGTTAGACTCATTGTA+CGG | - | chr3_4:47000115-47000134 | Msa0503600:intron | 35.0% | |
| TTGCTTATAATTAAGGCCAG+AGG | - | chr3_4:47000280-47000299 | Msa0503600:intron | 35.0% | |
| TGCTTATAATTAAGGCCAGA+GGG | - | chr3_4:47000281-47000300 | Msa0503600:intron | 35.0% | |
| !! | AGGGACTAAATAGTTTGCTT+AGG | - | chr3_4:47000300-47000319 | Msa0503600:intron | 35.0% |
| ! | ATTTGGGATATGAGTCTGTT+TGG | - | chr3_4:47000395-47000414 | Msa0503600:intron | 35.0% |
| TTGTTTGTGGTCTATTTCGA+AGG | - | chr3_4:47000745-47000764 | Msa0503600:intron | 35.0% | |
| !!! | TTTTTTCATGCTTGGGTTAC+GGG | - | chr3_4:47000859-47000878 | Msa0503600:intron | 35.0% |
| AAGAGCTTATGCAAATAAGC+TGG | + | chr3_4:47000984-47001003 | None:intergenic | 35.0% | |
| !! | AAGCTCTTTAGGATAGCTTA+TGG | - | chr3_4:46998935-46998954 | Msa0503600:intron | 35.0% |
| !! | GGGTTTGCTAATTGTTGAAA+TGG | - | chr3_4:47001157-47001176 | Msa0503600:intron | 35.0% |
| AAGCTTAGGTTTGATGAACT+TGG | - | chr3_4:47001242-47001261 | Msa0503600:intron | 35.0% | |
| CGAAAGTGATTTCTTGGAAT+TGG | - | chr3_4:47001314-47001333 | Msa0503600:intron | 35.0% | |
| TGGAATTGGTTGCATTTGAA+AGG | - | chr3_4:47001328-47001347 | Msa0503600:intron | 35.0% | |
| !!! | GCTTTGTTTTGTCACATTAC+TGG | - | chr3_4:47001454-47001473 | Msa0503600:intron | 35.0% |
| ! | GGGTTGATTAACTGTATTGA+TGG | - | chr3_4:47001576-47001595 | Msa0503600:intron | 35.0% |
| ! | AATGAAACAGCCTTATAACC+TGG | + | chr3_4:47001676-47001695 | None:intergenic | 35.0% |
| ! | TTCTTATGCCATGCTTTTGT+TGG | - | chr3_4:47001792-47001811 | Msa0503600:intron | 35.0% |
| ! | CAAGTTGGGATAATCTCTTA+CGG | - | chr3_4:47001863-47001882 | Msa0503600:intron | 35.0% |
| AATCTCTTGAATTTGATGCG+GGG | + | chr3_4:47002105-47002124 | None:intergenic | 35.0% | |
| ! | GATTTTAGACAAAGAAGCAG+TGG | - | chr3_4:47002244-47002263 | Msa0503600:intron | 35.0% |
| TTATATTGTGCAGCTCAAAG+TGG | - | chr3_4:47002310-47002329 | Msa0503600:intron | 35.0% | |
| ACACTACATTCAGACTTAGA+AGG | - | chr3_4:47002510-47002529 | Msa0503600:intron | 35.0% | |
| TACATTCAGACTTAGAAGGA+TGG | - | chr3_4:47002514-47002533 | Msa0503600:intron | 35.0% | |
| TGGAAGGTAATACTTACAGT+GGG | + | chr3_4:47002568-47002587 | None:intergenic | 35.0% | |
| ATGGAAGGTAATACTTACAG+TGG | + | chr3_4:47002569-47002588 | None:intergenic | 35.0% | |
| ! | AAGGAGGGTGTAGTTAAAAT+AGG | - | chr3_4:47002734-47002753 | Msa0503600:intron | 35.0% |
| ! | CAATGTGTGTTTTGTGTACA+TGG | - | chr3_4:47002987-47003006 | Msa0503600:intron | 35.0% |
| CAGGTATTCACCTAACATAA+AGG | - | chr3_4:47003113-47003132 | Msa0503600:intron | 35.0% | |
| CAAAACACGATATGATCGAA+AGG | + | chr3_4:47003385-47003404 | None:intergenic | 35.0% | |
| ! | CTTTCGATCATATCGTGTTT+TGG | - | chr3_4:47003383-47003402 | Msa0503600:CDS | 35.0% |
| !!! | GATCATATCGTGTTTTGGAA+AGG | - | chr3_4:47003388-47003407 | Msa0503600:CDS | 35.0% |
| GAGAGGAAGAAGAAAAGCTT+TGG | + | chr3_4:46998541-46998560 | None:intergenic | 40.0% | |
| TTACGGTGGAGAAAGAGATT+TGG | + | chr3_4:46998662-46998681 | None:intergenic | 40.0% | |
| ! | TGGTTTGATGAACTTGGTGA+CGG | - | chr3_4:46999184-46999203 | Msa0503600:intron | 40.0% |
| !!! | ATGTTTGGCATTGGCCATTT+TGG | - | chr3_4:46999265-46999284 | Msa0503600:intron | 40.0% |
| !!! | TGTTTGGCATTGGCCATTTT+GGG | - | chr3_4:46999266-46999285 | Msa0503600:intron | 40.0% |
| CACCTTATACGTACCCAAAA+TGG | + | chr3_4:46999282-46999301 | None:intergenic | 40.0% | |
| !! | CATTTTGGGTACGTATAAGG+TGG | - | chr3_4:46999280-46999299 | Msa0503600:intron | 40.0% |
| ! | ATAAGGTGGAGAGGTATATG+TGG | - | chr3_4:46999294-46999313 | Msa0503600:intron | 40.0% |
| TGATCATGAATGAGGATGAG+AGG | - | chr3_4:46999360-46999379 | Msa0503600:intron | 40.0% | |
| ! | GAATGGATCCAGGATTAGTA+AGG | - | chr3_4:46999520-46999539 | Msa0503600:CDS | 40.0% |
| CTTACTTCCCTTACTAATCC+TGG | + | chr3_4:46999531-46999550 | None:intergenic | 40.0% | |
| AACAAGAATGTGATCTGTGG+TGG | + | chr3_4:46999567-46999586 | None:intergenic | 40.0% | |
| ACCACAGATCACATTCTTGT+TGG | - | chr3_4:46999566-46999585 | Msa0503600:CDS | 40.0% | |
| TCCAACAAGAATGTGATCTG+TGG | + | chr3_4:46999570-46999589 | None:intergenic | 40.0% | |
| AGCAAACTATTTAGTCCCTC+TGG | + | chr3_4:47000299-47000318 | None:intergenic | 40.0% | |
| ! | TTGCCCTTTTGCATATGCTT+TGG | - | chr3_4:47000371-47000390 | Msa0503600:intron | 40.0% |
| TTTGGGTGGATCTTGCTAAA+TGG | - | chr3_4:47000602-47000621 | Msa0503600:intron | 40.0% | |
| GCTAAATGGATGAGTGTGTT+TGG | - | chr3_4:47000616-47000635 | Msa0503600:intron | 40.0% | |
| AAAACGGTTTCCCGTTTCTT+TGG | - | chr3_4:47000793-47000812 | Msa0503600:intron | 40.0% | |
| ATAGCATAAAGGTGACTGTC+TGG | - | chr3_4:47001104-47001123 | Msa0503600:intron | 40.0% | |
| ! | AGGTTTGATGAACTTGGTGA+CGG | - | chr3_4:47001248-47001267 | Msa0503600:intron | 40.0% |
| TGGTTGCATTTGAAAGGATC+TGG | - | chr3_4:47001334-47001353 | Msa0503600:intron | 40.0% | |
| ! | GTCTGATTTTTGCTGCTGTT+AGG | - | chr3_4:47001484-47001503 | Msa0503600:intron | 40.0% |
| GATGGAATTAGTGTTAGTGC+AGG | - | chr3_4:47001594-47001613 | Msa0503600:intron | 40.0% | |
| TCCAATGAAGCCAGGTTATA+AGG | - | chr3_4:47001663-47001682 | Msa0503600:intron | 40.0% | |
| !! | GGGCGTTTGAAATTTTTCGT+TGG | - | chr3_4:47001750-47001769 | Msa0503600:intron | 40.0% |
| CGTAAGAGATTATCCCAACT+TGG | + | chr3_4:47001865-47001884 | None:intergenic | 40.0% | |
| CTAGAGAATACATTCGTCTG+AGG | + | chr3_4:47001934-47001953 | None:intergenic | 40.0% | |
| !! | GTATTCTCTAGAGTTGAGTC+TGG | - | chr3_4:47001943-47001962 | Msa0503600:intron | 40.0% |
| ! | TCTAGAGTTGAGTCTGGTAA+TGG | - | chr3_4:47001949-47001968 | Msa0503600:intron | 40.0% |
| AGATTGCCTTCATTTCAGCA+TGG | - | chr3_4:47001979-47001998 | Msa0503600:intron | 40.0% | |
| ACAGAACCATGCTGAAATGA+AGG | + | chr3_4:47001988-47002007 | None:intergenic | 40.0% | |
| TAAACCTGCTTCGGAAATGA+GGG | + | chr3_4:47002017-47002036 | None:intergenic | 40.0% | |
| ATAAACCTGCTTCGGAAATG+AGG | + | chr3_4:47002018-47002037 | None:intergenic | 40.0% | |
| AGAGATTAGATAAAACCGCG+AGG | - | chr3_4:47002118-47002137 | Msa0503600:intron | 40.0% | |
| TTTAGACAAAGAAGCAGTGG+AGG | - | chr3_4:47002247-47002266 | Msa0503600:intron | 40.0% | |
| TTGAGCTGCACAATATAACC+AGG | + | chr3_4:47002308-47002327 | None:intergenic | 40.0% | |
| GTTATTGCAAGGCGTAATTG+TGG | - | chr3_4:47002482-47002501 | Msa0503600:intron | 40.0% | |
| AACTCGACTCAACAAAACTC+CGG | + | chr3_4:47002628-47002647 | None:intergenic | 40.0% | |
| CAACACAAAACGCATTGAAC+TGG | + | chr3_4:47003016-47003035 | None:intergenic | 40.0% | |
| AAGAGCGAGTGAGAGATGAA+CGG | + | chr3_4:46998608-46998627 | None:intergenic | 45.0% | |
| ATCTCTCACTCGCTCTTCAT+CGG | - | chr3_4:46998611-46998630 | Msa0503600:three_prime_UTR | 45.0% | |
| GAAAGAGATTTGGCGGAGAT+AGG | + | chr3_4:46998652-46998671 | None:intergenic | 45.0% | |
| !! | TGAAGTGAAAGTGCTTACGG+TGG | + | chr3_4:46998676-46998695 | None:intergenic | 45.0% |
| AGCATAAAGGTGACTGTGTC+TGG | - | chr3_4:46999032-46999051 | Msa0503600:intron | 45.0% | |
| ! | GGTTTGATGAACTTGGTGAC+GGG | - | chr3_4:46999185-46999204 | Msa0503600:intron | 45.0% |
| AGCACACTGAAAACTAGTGC+AGG | - | chr3_4:46999235-46999254 | Msa0503600:intron | 45.0% | |
| GCACACTGAAAACTAGTGCA+GGG | - | chr3_4:46999236-46999255 | Msa0503600:intron | 45.0% | |
| !! | GGCCATTTTGGGTACGTATA+AGG | - | chr3_4:46999277-46999296 | Msa0503600:intron | 45.0% |
| GAGTAGGAAGCAACAATCTC+AGG | - | chr3_4:47000654-47000673 | Msa0503600:intron | 45.0% | |
| !! | TTGGGTTTGCTGCTTGTTTG+TGG | - | chr3_4:47000732-47000751 | Msa0503600:intron | 45.0% |
| ! | GGTTTGATGAACTTGGTGAC+GGG | - | chr3_4:46999185-46999204 | Msa0503600:intron | 45.0% |
| CAACGCGTAGACAAAGCAAA+AGG | + | chr3_4:47001394-47001413 | None:intergenic | 45.0% | |
| ! | CTTTTGCTTTGTCTACGCGT+TGG | - | chr3_4:47001392-47001411 | Msa0503600:intron | 45.0% |
| CTTCATGATCCAATGAAGCC+AGG | - | chr3_4:47001655-47001674 | Msa0503600:intron | 45.0% | |
| GCCTTATAACCTGGCTTCAT+TGG | + | chr3_4:47001667-47001686 | None:intergenic | 45.0% | |
| CGGTAGACATAAACCTGCTT+CGG | + | chr3_4:47002026-47002045 | None:intergenic | 45.0% | |
| ! | AGGCAATTCAGGTTCTGGTA+AGG | + | chr3_4:47002082-47002101 | None:intergenic | 45.0% |
| ! | GAGGTACCTGATATAAAGCC+TGG | - | chr3_4:47002287-47002306 | Msa0503600:intron | 45.0% |
| AGACTTAGAAGGATGGTAGC+TGG | - | chr3_4:47002521-47002540 | Msa0503600:intron | 45.0% | |
| GACTTAGAAGGATGGTAGCT+GGG | - | chr3_4:47002522-47002541 | Msa0503600:intron | 45.0% | |
| ACTTAGAAGGATGGTAGCTG+GGG | - | chr3_4:47002523-47002542 | Msa0503600:intron | 45.0% | |
| AGCCAAACTCTACTACCTGA+GGG | - | chr3_4:47003170-47003189 | Msa0503600:intron | 45.0% | |
| ATCCCTCAGGTAGTAGAGTT+TGG | + | chr3_4:47003175-47003194 | None:intergenic | 45.0% | |
| ! | GGGCATTCATTTTATCCCTC+AGG | + | chr3_4:47003188-47003207 | None:intergenic | 45.0% |
| TCCTCTCTACGAATCAGCCA+TGG | - | chr3_4:46998554-46998573 | Msa0503600:three_prime_UTR | 50.0% | |
| ACGAATCAGCCATGGCTTCA+CGG | - | chr3_4:46998562-46998581 | Msa0503600:three_prime_UTR | 50.0% | |
| GAGATTTGGCGGAGATAGGT+CGG | + | chr3_4:46998648-46998667 | None:intergenic | 50.0% | |
| CGGTGGAGAAAGAGATTTGG+CGG | + | chr3_4:46998659-46998678 | None:intergenic | 50.0% | |
| CACTGAAAACTAGTGCAGGG+AGG | - | chr3_4:46999239-46999258 | Msa0503600:intron | 50.0% | |
| ! | AGTGCAGGGAGGTGTATGTT+TGG | - | chr3_4:46999250-46999269 | Msa0503600:intron | 50.0% |
| ! | GGGAGGTGTATGTTTGGCAT+TGG | - | chr3_4:46999256-46999275 | Msa0503600:intron | 50.0% |
| TGGGTACGTATAAGGTGGAG+AGG | - | chr3_4:46999285-46999304 | Msa0503600:intron | 50.0% | |
| ! | AGGTGGAGAGGTATATGTGG+TGG | - | chr3_4:46999297-46999316 | Msa0503600:intron | 50.0% |
| AGTGGTACTTGAGTGCAGAG+TGG | - | chr3_4:46999451-46999470 | Msa0503600:intron | 50.0% | |
| GACATTGGACCCCTCTGTAA+TGG | + | chr3_4:46999636-46999655 | None:intergenic | 50.0% | |
| TTGCTTTGTCTACGCGTTGG+TGG | - | chr3_4:47001395-47001414 | Msa0503600:intron | 50.0% | |
| CTGTTAGGTGTCCACAGTTC+TGG | - | chr3_4:47001499-47001518 | Msa0503600:intron | 50.0% | |
| !! | GGTCTGGTGTTGCGGATATT+GGG | - | chr3_4:47001556-47001575 | Msa0503600:intron | 50.0% |
| TTGTCCCTCATTTCCGAAGC+AGG | - | chr3_4:47002010-47002029 | Msa0503600:intron | 50.0% | |
| CTCTTGAATTTGATGCGGGG+AGG | + | chr3_4:47002102-47002121 | None:intergenic | 50.0% | |
| AGACAAAGAAGCAGTGGAGG+AGG | - | chr3_4:47002250-47002269 | Msa0503600:intron | 50.0% | |
| GGAGGTGAAAGAACAGAGAG+AGG | - | chr3_4:47002268-47002287 | Msa0503600:intron | 50.0% | |
| !! | AGGAAGTACCGGAGAACAAG+AGG | - | chr3_4:47002435-47002454 | Msa0503600:intron | 50.0% |
| GAAACACGCCTCTTGTTCTC+CGG | + | chr3_4:47002446-47002465 | None:intergenic | 50.0% | |
| CTGCTTGTAACTCTGCACCT+TGG | - | chr3_4:47002602-47002621 | Msa0503600:intron | 50.0% | |
| TTGTAACTCTGCACCTTGGC+CGG | - | chr3_4:47002606-47002625 | Msa0503600:intron | 50.0% | |
| ACTCAACAAAACTCCGGCCA+AGG | + | chr3_4:47002622-47002641 | None:intergenic | 50.0% | |
| GAGCCAAACTCTACTACCTG+AGG | - | chr3_4:47003169-47003188 | Msa0503600:intron | 50.0% | |
| !! | GACACTAGTCTTCAGCCTGT+TGG | - | chr3_4:47003221-47003240 | Msa0503600:intron | 50.0% |
| !! | GCCATGGCTGATTCGTAGAG+AGG | + | chr3_4:46998558-46998577 | None:intergenic | 55.0% |
| GAAGAGTCTCCGTGAAGCCA+TGG | + | chr3_4:46998574-46998593 | None:intergenic | 55.0% | |
| AGCGAGTGAGAGATGAACGG+AGG | + | chr3_4:46998605-46998624 | None:intergenic | 55.0% | |
| !! | TGAACTTGGTGACGGGCACA+TGG | - | chr3_4:46999192-46999211 | Msa0503600:intron | 55.0% |
| !! | TGAACTTGGTGACGGGCACA+TGG | - | chr3_4:46999192-46999211 | Msa0503600:intron | 55.0% |
| !! | GTCCACAGTTCTGGTTTGCG+TGG | - | chr3_4:47001508-47001527 | Msa0503600:intron | 55.0% |
| GTCCACGCAAACCAGAACTG+TGG | + | chr3_4:47001513-47001532 | None:intergenic | 55.0% | |
| !! | CAGTTCTGGTTTGCGTGGAC+AGG | - | chr3_4:47001513-47001532 | Msa0503600:intron | 55.0% |
| GTCAGGTGCTAAGCAGAGCT+GGG | - | chr3_4:47001535-47001554 | Msa0503600:intron | 55.0% | |
| !! | GGGTCTGGTGTTGCGGATAT+TGG | - | chr3_4:47001555-47001574 | Msa0503600:intron | 55.0% |
| TTGATGCGGGGAGGCAATTC+AGG | + | chr3_4:47002093-47002112 | None:intergenic | 55.0% | |
| AACCGCGAGGCACATTATGC+AGG | - | chr3_4:47002131-47002150 | Msa0503600:intron | 55.0% | |
| TGCCTGCATAATGTGCCTCG+CGG | + | chr3_4:47002136-47002155 | None:intergenic | 55.0% | |
| AGAAGGATGGTAGCTGGGGT+TGG | - | chr3_4:47002527-47002546 | Msa0503600:intron | 55.0% | |
| GAAGGATGGTAGCTGGGGTT+GGG | - | chr3_4:47002528-47002547 | Msa0503600:intron | 55.0% | |
| ! | CTGGTTTGCGTGGACAGGTC+AGG | - | chr3_4:47001518-47001537 | Msa0503600:intron | 60.0% |
| GGTCAGGTGCTAAGCAGAGC+TGG | - | chr3_4:47001534-47001553 | Msa0503600:intron | 60.0% | |
| GTGCTAAGCAGAGCTGGGTC+TGG | - | chr3_4:47001540-47001559 | Msa0503600:intron | 60.0% | |
| ! | CAGAGCTGGGTCTGGTGTTG+CGG | - | chr3_4:47001548-47001567 | Msa0503600:intron | 60.0% |
| ! | CGGGGAGGCAATTCAGGTTC+TGG | + | chr3_4:47002087-47002106 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 46998533 | 47003498 | 46998533 | ID=Msa0503600;Name=Msa0503600 |
| chr3_4 | mRNA | 46998533 | 47003498 | 46998533 | ID=Msa0503600-mRNA-1;Parent=Msa0503600;Name=Msa0503600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=40|0.75|0.8|1|0.75|0.8|5|283|224 |
| chr3_4 | exon | 46998533 | 46998915 | 46998533 | ID=Msa0503600-mRNA-1:exon:10049;Parent=Msa0503600-mRNA-1 |
| chr3_4 | exon | 46999461 | 46999594 | 46999461 | ID=Msa0503600-mRNA-1:exon:10048;Parent=Msa0503600-mRNA-1 |
| chr3_4 | exon | 46999700 | 46999786 | 46999700 | ID=Msa0503600-mRNA-1:exon:10047;Parent=Msa0503600-mRNA-1 |
| chr3_4 | exon | 46999864 | 47000112 | 46999864 | ID=Msa0503600-mRNA-1:exon:10046;Parent=Msa0503600-mRNA-1 |
| chr3_4 | exon | 47003354 | 47003498 | 47003354 | ID=Msa0503600-mRNA-1:exon:10045;Parent=Msa0503600-mRNA-1 |
| chr3_4 | five_prime_UTR | 47003459 | 47003498 | 47003459 | ID=Msa0503600-mRNA-1:five_prime_utr;Parent=Msa0503600-mRNA-1 |
| chr3_4 | CDS | 47003354 | 47003458 | 47003354 | ID=Msa0503600-mRNA-1:cds;Parent=Msa0503600-mRNA-1 |
| chr3_4 | CDS | 46999864 | 47000112 | 46999864 | ID=Msa0503600-mRNA-1:cds;Parent=Msa0503600-mRNA-1 |
| chr3_4 | CDS | 46999700 | 46999786 | 46999700 | ID=Msa0503600-mRNA-1:cds;Parent=Msa0503600-mRNA-1 |
| chr3_4 | CDS | 46999461 | 46999594 | 46999461 | ID=Msa0503600-mRNA-1:cds;Parent=Msa0503600-mRNA-1 |
| chr3_4 | CDS | 46998816 | 46998915 | 46998816 | ID=Msa0503600-mRNA-1:cds;Parent=Msa0503600-mRNA-1 |
| chr3_4 | three_prime_UTR | 46998533 | 46998815 | 46998533 | ID=Msa0503600-mRNA-1:three_prime_utr;Parent=Msa0503600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
