Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1106870 | XP_013448969.1 | 93.333 | 255 | 14 | 2 | 1 | 253 | 1 | 254 | 4.08e-165 | 467 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1106870 | sp|Q8W487|YB95_ARATH | 43.191 | 257 | 135 | 8 | 1 | 253 | 1 | 250 | 8.99e-59 | 189 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1106870 | I3SR78 | 93.333 | 255 | 14 | 2 | 1 | 253 | 1 | 254 | 1.95e-165 | 467 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0047650 | Msa1106870 | 0.800012 | 1.759479e-48 | -8.615850e-47 |
Msa0648620 | Msa1106870 | 0.807760 | 4.317824e-50 | -8.615850e-47 |
Msa0648670 | Msa1106870 | 0.812908 | 3.346202e-51 | -8.615850e-47 |
Msa0223950 | Msa1106870 | 0.813216 | 2.863386e-51 | -8.615850e-47 |
Msa1022730 | Msa1106870 | 0.840125 | 1.049950e-57 | -8.615850e-47 |
Msa1106870 | Msa1116940 | 0.813279 | 2.773305e-51 | -8.615850e-47 |
Msa1106870 | Msa1136880 | 0.816241 | 6.119181e-52 | -8.615850e-47 |
Msa1106870 | Msa1211820 | 0.843077 | 1.749260e-58 | -8.615850e-47 |
Msa1106870 | Msa1299690 | 0.815662 | 8.241241e-52 | -8.615850e-47 |
Msa1106870 | Msa1332230 | 0.849149 | 3.892942e-60 | -8.615850e-47 |
Msa1106870 | Msa1341780 | 0.834051 | 3.746756e-56 | -8.615850e-47 |
Msa1106870 | Msa1364810 | 0.848404 | 6.262496e-60 | -8.615850e-47 |
Msa1106870 | Msa1433590 | 0.850247 | 1.921301e-60 | -8.615850e-47 |
Msa0265200 | Msa1106870 | 0.816203 | 6.242412e-52 | -8.615850e-47 |
Msa0503600 | Msa1106870 | 0.804544 | 2.053359e-49 | -8.615850e-47 |
Msa0587830 | Msa1106870 | 0.841863 | 3.671804e-58 | -8.615850e-47 |
Msa0587850 | Msa1106870 | 0.859426 | 4.171372e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1106870 | MtrunA17_Chr7g0239661 | 93.333 | 255 | 14 | 2 | 1 | 253 | 1 | 254 | 3.76e-169 | 467 |
Msa1106870 | MtrunA17_Chr5g0435861 | 46.614 | 251 | 112 | 5 | 20 | 252 | 8 | 254 | 2.47e-68 | 211 |
Msa1106870 | MtrunA17_Chr4g0001071 | 38.365 | 159 | 90 | 3 | 98 | 253 | 83 | 236 | 1.36e-28 | 108 |
Msa1106870 | MtrunA17_Chr1g0149801 | 31.602 | 231 | 140 | 9 | 28 | 253 | 16 | 233 | 2.02e-20 | 87.0 |
Msa1106870 | MtrunA17_Chr7g0257161 | 46.667 | 60 | 32 | 0 | 194 | 253 | 141 | 200 | 1.55e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1106870 | AT5G02050.1 | 47.232 | 271 | 121 | 6 | 1 | 253 | 1 | 267 | 6.54e-69 | 213 |
Msa1106870 | AT3G55605.1 | 44.528 | 265 | 128 | 8 | 1 | 253 | 1 | 258 | 5.92e-62 | 195 |
Msa1106870 | AT2G39795.1 | 43.191 | 257 | 135 | 8 | 1 | 253 | 1 | 250 | 9.13e-60 | 189 |
Msa1106870 | AT5G05990.1 | 38.521 | 257 | 134 | 7 | 18 | 252 | 4 | 258 | 2.68e-47 | 158 |
Msa1106870 | AT2G39790.1 | 33.597 | 253 | 153 | 8 | 1 | 252 | 1 | 239 | 1.84e-34 | 124 |
Msa1106870 | AT1G15870.1 | 31.308 | 214 | 131 | 8 | 47 | 253 | 37 | 241 | 7.19e-27 | 104 |
Msa1106870 | AT1G80720.2 | 31.313 | 198 | 125 | 5 | 58 | 253 | 53 | 241 | 1.26e-22 | 93.2 |
Msa1106870 | AT1G80720.1 | 31.313 | 198 | 125 | 5 | 58 | 253 | 1 | 189 | 1.75e-22 | 91.7 |
Msa1106870 | AT4G31930.1 | 31.535 | 241 | 142 | 9 | 19 | 253 | 11 | 234 | 4.21e-19 | 83.6 |
Msa1106870 | AT4G32605.1 | 31.915 | 94 | 60 | 1 | 164 | 253 | 126 | 219 | 6.77e-11 | 60.8 |
Find 93 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATTCATCCGGATTCTTTA+TGG | 0.182617 | 7_3:-47573066 | None:intergenic |
AGGGTTTAGTGTTAGGGTTT+TGG | 0.197741 | 7_3:-47570489 | None:intergenic |
GGGTTTGAGGGTTTAGTGTT+AGG | 0.271227 | 7_3:-47570496 | None:intergenic |
ATGGAGTGTGTATGGAGTTT+GGG | 0.281286 | 7_3:+47573003 | Msa1106870:CDS |
TTGAGATGTTATCTATAGTT+TGG | 0.302035 | 7_3:+47573614 | Msa1106870:three_prime_UTR |
CTCTGTTGAGGTGCCACGTT+AGG | 0.340860 | 7_3:-47572900 | None:intergenic |
AATGGAGTGTGTATGGAGTT+TGG | 0.345306 | 7_3:+47573002 | Msa1106870:CDS |
CTATCAATCACAACCTCATC+AGG | 0.345649 | 7_3:-47573038 | None:intergenic |
CTATCATTCTCATTCTTCTC+GGG | 0.360091 | 7_3:-47572939 | None:intergenic |
CAAAGACAACAAGGAATACT+TGG | 0.378496 | 7_3:+47573308 | Msa1106870:CDS |
GCTATCATTCTCATTCTTCT+CGG | 0.381925 | 7_3:-47572940 | None:intergenic |
GATTGCGCTGTGGAAGGTTC+TGG | 0.386945 | 7_3:-47570619 | None:intergenic |
CAAAGGAAATGGAGTGTGTA+TGG | 0.388939 | 7_3:+47572995 | Msa1106870:CDS |
AGTTGAATAGTTCTTTCTCC+AGG | 0.396432 | 7_3:-47572831 | None:intergenic |
GGTTTGAGGGTTTAGTGTTA+GGG | 0.399619 | 7_3:-47570495 | None:intergenic |
GAGTGTAGAAAGGGGTTTGA+GGG | 0.401665 | 7_3:-47570508 | None:intergenic |
GAGGAGAGGGAGTGCGGCGG+CGG | 0.404148 | 7_3:-47570571 | None:intergenic |
AAACAAATGAGACCTATCTA+TGG | 0.406555 | 7_3:-47573574 | None:intergenic |
TAACCATCAGATCATATTAC+AGG | 0.408949 | 7_3:-47573461 | None:intergenic |
GTGCGGCGGCGGCGCCGCGA+CGG | 0.413744 | 7_3:-47570560 | None:intergenic |
GGACTCTTGTATTTGATTGA+AGG | 0.418794 | 7_3:-47573553 | None:intergenic |
GGCGGCGCCGCGACGGAGAG+CGG | 0.421645 | 7_3:-47570553 | None:intergenic |
TGAAGACCAGCTGGTATATG+AGG | 0.426221 | 7_3:+47573088 | Msa1106870:CDS |
ATGCATTTAAACTAAAATCA+AGG | 0.442879 | 7_3:-47573431 | None:intergenic |
GACTCTTGTATTTGATTGAA+GGG | 0.453370 | 7_3:-47573552 | None:intergenic |
TGCGGAGGTGAGTGTAGAAA+GGG | 0.487812 | 7_3:-47570517 | None:intergenic |
TTGAAAATAGTCACAACTAA+AGG | 0.491752 | 7_3:-47572975 | None:intergenic |
AGCTGGTCTTCAGATTCATC+CGG | 0.494031 | 7_3:-47573077 | None:intergenic |
TTTGAGATCGAGGACAACCC+TGG | 0.494413 | 7_3:+47572813 | Msa1106870:CDS |
ACTTGAGAAAAGCCTTCTGC+AGG | 0.495315 | 7_3:-47573224 | None:intergenic |
TAGCTTGTCCATAAAGAATC+CGG | 0.497260 | 7_3:+47573058 | Msa1106870:CDS |
TGGAGGAAGTTGCCGCTGCA+CGG | 0.501833 | 7_3:-47570599 | None:intergenic |
TGAGTGTAGAAAGGGGTTTG+AGG | 0.505609 | 7_3:-47570509 | None:intergenic |
TTGCCGCTGCACGGCGAGAG+AGG | 0.509670 | 7_3:-47570590 | None:intergenic |
GGGTTGTCCTCGATCTCAAA+AGG | 0.511746 | 7_3:-47572810 | None:intergenic |
CGAAGAAGAGTATCATCAGC+GGG | 0.511851 | 7_3:-47570723 | None:intergenic |
TCTGTTGAGGTGCCACGTTA+GGG | 0.512444 | 7_3:-47572899 | None:intergenic |
TTGCGGAGGTGAGTGTAGAA+AGG | 0.517086 | 7_3:-47570518 | None:intergenic |
GTTGAATAGTTCTTTCTCCA+GGG | 0.519495 | 7_3:-47572830 | None:intergenic |
AAATACAAGAGTCCATAGAT+AGG | 0.526268 | 7_3:+47573562 | Msa1106870:three_prime_UTR |
AGAGAGGAGAGGGAGTGCGG+CGG | 0.530798 | 7_3:-47570574 | None:intergenic |
GGTGACTGCTTTCCCTGATG+AGG | 0.538518 | 7_3:+47573025 | Msa1106870:CDS |
ACCTCAACAGAGTGAGGATG+AGG | 0.540010 | 7_3:+47572911 | Msa1106870:CDS |
GAGTGGTTTCACTGTGGCGA+AGG | 0.541359 | 7_3:-47570653 | None:intergenic |
CTGCACGGCGAGAGAGGAGA+GGG | 0.542154 | 7_3:-47570584 | None:intergenic |
TGAAATCGACTGTGCTCTTG+AGG | 0.545067 | 7_3:+47570758 | Msa1106870:CDS |
CCCTCTCGTAGCTTCGCTTA+CGG | 0.550555 | 7_3:+47570684 | Msa1106870:CDS |
ACTGTGGCGAAGGAGGTTAA+CGG | 0.552843 | 7_3:-47570643 | None:intergenic |
GCTCTTGAGGATAATAATGA+AGG | 0.555442 | 7_3:+47570771 | Msa1106870:CDS |
TTGTGTTGGGTGTTATCCCT+CGG | 0.555715 | 7_3:-47573257 | None:intergenic |
GCCTCATCCTCACTCTGTTG+AGG | 0.559817 | 7_3:-47572912 | None:intergenic |
TGCATTTAAACTAAAATCAA+GGG | 0.563695 | 7_3:-47573430 | None:intergenic |
AAAGACAACAAGGAATACTT+GGG | 0.563940 | 7_3:+47573309 | Msa1106870:CDS |
AACGGCGATTGCGCTGTGGA+AGG | 0.565623 | 7_3:-47570625 | None:intergenic |
GATCTCAAAAGGAAAATCAC+CGG | 0.567645 | 7_3:-47572799 | None:intergenic |
GGATGAATCTGAAGACCAGC+TGG | 0.570489 | 7_3:+47573079 | Msa1106870:CDS |
CAGGTCCCTCATATACCAGC+TGG | 0.571273 | 7_3:-47573094 | None:intergenic |
TGGTTTCACTGTGGCGAAGG+AGG | 0.574627 | 7_3:-47570650 | None:intergenic |
GCGAGAGAGGAGAGGGAGTG+CGG | 0.575299 | 7_3:-47570577 | None:intergenic |
TATCATTCTCATTCTTCTCG+GGG | 0.576332 | 7_3:-47572938 | None:intergenic |
CTCAAGTATCTCGAGATCCG+AGG | 0.584465 | 7_3:+47573240 | Msa1106870:CDS |
CACAGTCGATTTCACTGTCA+AGG | 0.589925 | 7_3:-47570749 | None:intergenic |
TTTGGATGAAAACCTGCAGA+AGG | 0.596555 | 7_3:+47573212 | Msa1106870:CDS |
TCAAGTATCTCGAGATCCGA+GGG | 0.601222 | 7_3:+47573241 | Msa1106870:CDS |
TTCTACACTCACCTCCGCAA+TGG | 0.601289 | 7_3:+47570521 | Msa1106870:exon |
CTAAATGCTTACGTGAACTC+AGG | 0.611960 | 7_3:-47573113 | None:intergenic |
TCTCCTCTCTCGCCGTGCAG+CGG | 0.617355 | 7_3:+47570587 | Msa1106870:CDS |
ATCTCAAAAGGAAAATCACC+GGG | 0.618030 | 7_3:-47572798 | None:intergenic |
TGGAGTGTGTATGGAGTTTG+GGG | 0.622811 | 7_3:+47573004 | Msa1106870:CDS |
TGCGCTGTGGAAGGTTCTGG+AGG | 0.628252 | 7_3:-47570616 | None:intergenic |
GAAGACCAGCTGGTATATGA+GGG | 0.628639 | 7_3:+47573089 | Msa1106870:CDS |
TATCAATCACAACCTCATCA+GGG | 0.630563 | 7_3:-47573037 | None:intergenic |
GCTGCACGGCGAGAGAGGAG+AGG | 0.631466 | 7_3:-47570585 | None:intergenic |
TGTCCTGTAATATGATCTGA+TGG | 0.633731 | 7_3:+47573458 | Msa1106870:three_prime_UTR |
TCGAAGAAGAGTATCATCAG+CGG | 0.634573 | 7_3:-47570724 | None:intergenic |
TCTATAGTTTGGCTAGACGA+AGG | 0.636043 | 7_3:+47573625 | Msa1106870:three_prime_UTR |
CGTGGCACCTCAACAGAGTG+AGG | 0.643427 | 7_3:+47572905 | Msa1106870:CDS |
CATGTTCAACAAAGACAACA+AGG | 0.647062 | 7_3:+47573299 | Msa1106870:CDS |
ACAACAAGGAATACTTGGGG+TGG | 0.664017 | 7_3:+47573313 | Msa1106870:CDS |
AGCGGTGTACATAGCCATTG+CGG | 0.666792 | 7_3:-47570535 | None:intergenic |
GGTTAACGGCGATTGCGCTG+TGG | 0.671069 | 7_3:-47570629 | None:intergenic |
ACGAGAGGGTACAAAATGAG+TGG | 0.672739 | 7_3:-47570670 | None:intergenic |
AAGAAGAGTATCATCAGCGG+GGG | 0.679029 | 7_3:-47570721 | None:intergenic |
TATGATCTGATGGTTACTTG+AGG | 0.683829 | 7_3:+47573468 | Msa1106870:three_prime_UTR |
GCCGTAAGCGAAGCTACGAG+AGG | 0.685303 | 7_3:-47570685 | None:intergenic |
ATGTACACCGCTCTCCGTCG+CGG | 0.689738 | 7_3:+47570546 | Msa1106870:CDS |
TCAAGTTGACATCCCTAACG+TGG | 0.692064 | 7_3:+47572887 | Msa1106870:CDS |
GCGGAGGTGAGTGTAGAAAG+GGG | 0.698638 | 7_3:-47570516 | None:intergenic |
CCGTAAGCGAAGCTACGAGA+GGG | 0.698699 | 7_3:-47570684 | None:intergenic |
GGTGTACATAGCCATTGCGG+AGG | 0.709206 | 7_3:-47570532 | None:intergenic |
GAAGAAGAGTATCATCAGCG+GGG | 0.713416 | 7_3:-47570722 | None:intergenic |
CAAAATGAGTGGTTTCACTG+TGG | 0.726427 | 7_3:-47570659 | None:intergenic |
AAGACAACAAGGAATACTTG+GGG | 0.756411 | 7_3:+47573310 | Msa1106870:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAACTTAAAAACAAA+TGG | - | chr7_3:47570825-47570844 | None:intergenic | 10.0% |
!!! | AAAAAATTACGTTTGTTAAA+AGG | - | chr7_3:47570797-47570816 | None:intergenic | 15.0% |
!!! | AGTTTCAATTTTTTTTTTGT+TGG | + | chr7_3:47570920-47570939 | Msa1106870:intron | 15.0% |
!!! | GTTTCAATTTTTTTTTTGTT+GGG | + | chr7_3:47570921-47570940 | Msa1106870:intron | 15.0% |
!! | AAGATGTAAAAATTCTATAA+TGG | + | chr7_3:47571091-47571110 | Msa1106870:intron | 15.0% |
!! | AAAAACAAAACTTCACAAAA+GGG | - | chr7_3:47570996-47571015 | None:intergenic | 20.0% |
!! | TAAAAACAAAACTTCACAAA+AGG | - | chr7_3:47570997-47571016 | None:intergenic | 20.0% |
!!! | TGAAGTTTTGTTTTTATTAG+TGG | + | chr7_3:47571001-47571020 | Msa1106870:intron | 20.0% |
!!! | TAGAATTTTTACATCTTACA+AGG | - | chr7_3:47571088-47571107 | None:intergenic | 20.0% |
!!! | TCATTTTCTCAAAATATTAC+TGG | + | chr7_3:47571312-47571331 | Msa1106870:intron | 20.0% |
!!! | TTCATCCAATATCATTTTTT+CGG | - | chr7_3:47571638-47571657 | None:intergenic | 20.0% |
!!! | TTTAGTTGATGTAAATAAAG+TGG | + | chr7_3:47571692-47571711 | Msa1106870:intron | 20.0% |
!! | AAATATAAACAAAAATGGAG+TGG | - | chr7_3:47571985-47572004 | None:intergenic | 20.0% |
!! | GAGTGAAATATAAACAAAAA+TGG | - | chr7_3:47571990-47572009 | None:intergenic | 20.0% |
!! | TAAATCCAGACTTAAAAAAT+AGG | - | chr7_3:47572028-47572047 | None:intergenic | 20.0% |
!! | TGCATTTAAACTAAAATCAA+GGG | - | chr7_3:47573433-47573452 | None:intergenic | 20.0% |
!! | ATGCATTTAAACTAAAATCA+AGG | - | chr7_3:47573434-47573453 | None:intergenic | 20.0% |
!!! | GCTAATAATTTTTGAAAACT+TGG | + | chr7_3:47573493-47573512 | Msa1106870:three_prime_UTR | 20.0% |
! | AAAACAAAACTTCACAAAAG+GGG | - | chr7_3:47570995-47571014 | None:intergenic | 25.0% |
! | TGGATCTTAATAGAATGATA+AGG | + | chr7_3:47571021-47571040 | Msa1106870:intron | 25.0% |
! | GGATCTTAATAGAATGATAA+GGG | + | chr7_3:47571022-47571041 | Msa1106870:intron | 25.0% |
!! | AGAATGATAAGGGTTTTTAT+AGG | + | chr7_3:47571032-47571051 | Msa1106870:intron | 25.0% |
!! | GAATGATAAGGGTTTTTATA+GGG | + | chr7_3:47571033-47571052 | Msa1106870:intron | 25.0% |
!! | TTTTACATCTTACAAGGAAA+TGG | - | chr7_3:47571082-47571101 | None:intergenic | 25.0% |
!! | CATGTTCTGAACATTATTAT+TGG | + | chr7_3:47571237-47571256 | Msa1106870:intron | 25.0% |
!! | AGTGTCAATAATATTTCTAC+CGG | + | chr7_3:47571866-47571885 | Msa1106870:intron | 25.0% |
! | AAATAGGTCATTGAAACATA+CGG | - | chr7_3:47572012-47572031 | None:intergenic | 25.0% |
!!! | AATGACCTATTTTTTAAGTC+TGG | + | chr7_3:47572020-47572039 | Msa1106870:intron | 25.0% |
!! | ATTTACATCTAATGGGTAAA+AGG | - | chr7_3:47572164-47572183 | None:intergenic | 25.0% |
! | ATGAGCAATTTACATCTAAT+GGG | - | chr7_3:47572171-47572190 | None:intergenic | 25.0% |
! | AATGAGCAATTTACATCTAA+TGG | - | chr7_3:47572172-47572191 | None:intergenic | 25.0% |
! | AAGAGATATTCAAATCTACA+AGG | - | chr7_3:47572405-47572424 | None:intergenic | 25.0% |
!!! | AAACCTTTTTTTTAGTCTGA+AGG | + | chr7_3:47572433-47572452 | Msa1106870:intron | 25.0% |
! | TTGAAAATAGTCACAACTAA+AGG | - | chr7_3:47572978-47572997 | None:intergenic | 25.0% |
!! | TTAGTTGTGACTATTTTCAA+AGG | + | chr7_3:47572978-47572997 | Msa1106870:CDS | 25.0% |
! | TTGAGATGTTATCTATAGTT+TGG | + | chr7_3:47573614-47573633 | Msa1106870:three_prime_UTR | 25.0% |
! | TGTAGCAGAATTTGAACTTT+TGG | - | chr7_3:47571571-47571590 | None:intergenic | 30.0% |
TTCCACCGAAAAAATGATAT+TGG | + | chr7_3:47571630-47571649 | Msa1106870:intron | 30.0% | |
!!! | ATCCAATATCATTTTTTCGG+TGG | - | chr7_3:47571635-47571654 | None:intergenic | 30.0% |
!! | GGATTTATTTTTCTCTGTCT+TGG | + | chr7_3:47572041-47572060 | Msa1106870:intron | 30.0% |
!! | AAAACATGCTTTAACTTGAC+TGG | + | chr7_3:47572129-47572148 | Msa1106870:intron | 30.0% |
! | TCAAATGTTGTTTATTGCTC+TGG | + | chr7_3:47572191-47572210 | Msa1106870:intron | 30.0% |
GTAGCAAATCAAAGAATCTT+TGG | - | chr7_3:47572367-47572386 | None:intergenic | 30.0% | |
CAACCTTCAGACTAAAAAAA+AGG | - | chr7_3:47572439-47572458 | None:intergenic | 30.0% | |
! | GTGACTATTTTCAAAGGAAA+TGG | + | chr7_3:47572984-47573003 | Msa1106870:CDS | 30.0% |
!! | TGTTCATTTTTACAGCGATT+TGG | + | chr7_3:47573194-47573213 | Msa1106870:intron | 30.0% |
! | TGTAAAAAGTTGGTTGTGTT+GGG | - | chr7_3:47573273-47573292 | None:intergenic | 30.0% |
CATGTATTCCTGTAAAAAGT+TGG | - | chr7_3:47573283-47573302 | None:intergenic | 30.0% | |
AAAGACAACAAGGAATACTT+GGG | + | chr7_3:47573309-47573328 | Msa1106870:CDS | 30.0% | |
TAACCATCAGATCATATTAC+AGG | - | chr7_3:47573464-47573483 | None:intergenic | 30.0% | |
GACTCTTGTATTTGATTGAA+GGG | - | chr7_3:47573555-47573574 | None:intergenic | 30.0% | |
AAATACAAGAGTCCATAGAT+AGG | + | chr7_3:47573562-47573581 | Msa1106870:three_prime_UTR | 30.0% | |
AAACAAATGAGACCTATCTA+TGG | - | chr7_3:47573577-47573596 | None:intergenic | 30.0% | |
GCTCTTGAGGATAATAATGA+AGG | + | chr7_3:47570771-47570790 | Msa1106870:CDS | 35.0% | |
TTATAGGGTTGTTAGTGTTG+TGG | + | chr7_3:47571048-47571067 | Msa1106870:intron | 35.0% | |
! | TAGGATTTGATCTGAAGTGT+GGG | - | chr7_3:47571143-47571162 | None:intergenic | 35.0% |
! | TTAGGATTTGATCTGAAGTG+TGG | - | chr7_3:47571144-47571163 | None:intergenic | 35.0% |
ACACTTCAGATCAAATCCTA+AGG | + | chr7_3:47571143-47571162 | Msa1106870:intron | 35.0% | |
TCAATGTGTCAGTACTTCAT+AGG | + | chr7_3:47571262-47571281 | Msa1106870:intron | 35.0% | |
TGTTAGTGTCAGTACTTCAT+AGG | + | chr7_3:47571343-47571362 | Msa1106870:intron | 35.0% | |
!! | TACAGAGTGTTGTCAAATAG+TGG | - | chr7_3:47571439-47571458 | None:intergenic | 35.0% |
ACACTGTAGTGTTATATCAC+TGG | + | chr7_3:47571504-47571523 | Msa1106870:intron | 35.0% | |
! | AGCAGAATTTGAACTTTTGG+TGG | - | chr7_3:47571568-47571587 | None:intergenic | 35.0% |
ACTTTGAGCTACATTCAAAG+TGG | - | chr7_3:47571667-47571686 | None:intergenic | 35.0% | |
TCAATTGTGTTGTGTGTATG+TGG | + | chr7_3:47571729-47571748 | Msa1106870:intron | 35.0% | |
CAATTGTGTTGTGTGTATGT+GGG | + | chr7_3:47571730-47571749 | Msa1106870:intron | 35.0% | |
AAGATTTGTCCTTTGTAGTC+TGG | + | chr7_3:47571793-47571812 | Msa1106870:intron | 35.0% | |
AGATTTGTCCTTTGTAGTCT+GGG | + | chr7_3:47571794-47571813 | Msa1106870:intron | 35.0% | |
! | GTCTTCTTTTGCTACTCATT+TGG | + | chr7_3:47571823-47571842 | Msa1106870:intron | 35.0% |
CATGTGCAAAACTATGATAC+CGG | - | chr7_3:47571888-47571907 | None:intergenic | 35.0% | |
TTGTTTATTGCTCTGGTTGA+GGG | + | chr7_3:47572198-47572217 | Msa1106870:intron | 35.0% | |
!! | TGGTGTTATGTTTGGTATCA+TGG | + | chr7_3:47572239-47572258 | Msa1106870:intron | 35.0% |
CATTATCTGCAGATTATCTG+TGG | + | chr7_3:47572494-47572513 | Msa1106870:intron | 35.0% | |
TCTGTGGTATAAGAAAATGC+AGG | + | chr7_3:47572510-47572529 | Msa1106870:intron | 35.0% | |
GAGTGTCATATACTGATGAT+TGG | + | chr7_3:47572573-47572592 | Msa1106870:intron | 35.0% | |
ATATACTGATGATTGGCACT+AGG | + | chr7_3:47572580-47572599 | Msa1106870:intron | 35.0% | |
ATCTCAAAAGGAAAATCACC+GGG | - | chr7_3:47572801-47572820 | None:intergenic | 35.0% | |
GATCTCAAAAGGAAAATCAC+CGG | - | chr7_3:47572802-47572821 | None:intergenic | 35.0% | |
!!! | TGATTTTCCTTTTGAGATCG+AGG | + | chr7_3:47572803-47572822 | Msa1106870:CDS | 35.0% |
GTTGAATAGTTCTTTCTCCA+GGG | - | chr7_3:47572833-47572852 | None:intergenic | 35.0% | |
AGTTGAATAGTTCTTTCTCC+AGG | - | chr7_3:47572834-47572853 | None:intergenic | 35.0% | |
TATCATTCTCATTCTTCTCG+GGG | - | chr7_3:47572941-47572960 | None:intergenic | 35.0% | |
CTATCATTCTCATTCTTCTC+GGG | - | chr7_3:47572942-47572961 | None:intergenic | 35.0% | |
GCTATCATTCTCATTCTTCT+CGG | - | chr7_3:47572943-47572962 | None:intergenic | 35.0% | |
TATCAATCACAACCTCATCA+GGG | - | chr7_3:47573040-47573059 | None:intergenic | 35.0% | |
! | TAGCTTGTCCATAAAGAATC+CGG | + | chr7_3:47573058-47573077 | Msa1106870:CDS | 35.0% |
AGATTCATCCGGATTCTTTA+TGG | - | chr7_3:47573069-47573088 | None:intergenic | 35.0% | |
! | CTGTAAAAAGTTGGTTGTGT+TGG | - | chr7_3:47573274-47573293 | None:intergenic | 35.0% |
! | CAACACAACCAACTTTTTAC+AGG | + | chr7_3:47573272-47573291 | Msa1106870:CDS | 35.0% |
CATGTTCAACAAAGACAACA+AGG | + | chr7_3:47573299-47573318 | Msa1106870:CDS | 35.0% | |
CAAAGACAACAAGGAATACT+TGG | + | chr7_3:47573308-47573327 | Msa1106870:CDS | 35.0% | |
AAGACAACAAGGAATACTTG+GGG | + | chr7_3:47573310-47573329 | Msa1106870:CDS | 35.0% | |
TGTCCTGTAATATGATCTGA+TGG | + | chr7_3:47573458-47573477 | Msa1106870:three_prime_UTR | 35.0% | |
TATGATCTGATGGTTACTTG+AGG | + | chr7_3:47573468-47573487 | Msa1106870:three_prime_UTR | 35.0% | |
GGACTCTTGTATTTGATTGA+AGG | - | chr7_3:47573556-47573575 | None:intergenic | 35.0% | |
!!! | TGTTAGGGTTTTGGGTAATG+GGG | - | chr7_3:47570483-47570502 | None:intergenic | 40.0% |
!!! | GTGTTAGGGTTTTGGGTAAT+GGG | - | chr7_3:47570484-47570503 | None:intergenic | 40.0% |
!!! | AGTGTTAGGGTTTTGGGTAA+TGG | - | chr7_3:47570485-47570504 | None:intergenic | 40.0% |
! | GGGTTTAGTGTTAGGGTTTT+GGG | - | chr7_3:47570491-47570510 | None:intergenic | 40.0% |
! | AGGGTTTAGTGTTAGGGTTT+TGG | - | chr7_3:47570492-47570511 | None:intergenic | 40.0% |
GGTTTGAGGGTTTAGTGTTA+GGG | - | chr7_3:47570498-47570517 | None:intergenic | 40.0% | |
CAAAATGAGTGGTTTCACTG+TGG | - | chr7_3:47570662-47570681 | None:intergenic | 40.0% | |
!! | TCGAAGAAGAGTATCATCAG+CGG | - | chr7_3:47570727-47570746 | None:intergenic | 40.0% |
ATCAAATCCTAAGGTGTGTC+CGG | + | chr7_3:47571152-47571171 | Msa1106870:intron | 40.0% | |
CAATGACACATGTCAGATAC+CGG | - | chr7_3:47571174-47571193 | None:intergenic | 40.0% | |
TAGGTTACTCGTGTTGTCAA+TGG | + | chr7_3:47571362-47571381 | Msa1106870:intron | 40.0% | |
TACTCGTGTTGTCAATGGAT+CGG | + | chr7_3:47571367-47571386 | Msa1106870:intron | 40.0% | |
CAAGCAGTGTTGTCAAATGT+CGG | - | chr7_3:47571535-47571554 | None:intergenic | 40.0% | |
ACAACAAACCCAGACTACAA+AGG | - | chr7_3:47571805-47571824 | None:intergenic | 40.0% | |
GTTGTTTATTGCTCTGGTTG+AGG | + | chr7_3:47572197-47572216 | Msa1106870:intron | 40.0% | |
TATGTTTGGTATCATGGTGC+TGG | + | chr7_3:47572245-47572264 | Msa1106870:intron | 40.0% | |
GCAAAGGCTCAAAATCATAG+TGG | - | chr7_3:47572301-47572320 | None:intergenic | 40.0% | |
CAAAGAATCTTTGGCATCAC+TGG | - | chr7_3:47572358-47572377 | None:intergenic | 40.0% | |
ATTGTGGGACAGATCTACAA+GGG | - | chr7_3:47572648-47572667 | None:intergenic | 40.0% | |
TTGTAGATCTGTCCCACAAT+CGG | + | chr7_3:47572648-47572667 | Msa1106870:intron | 40.0% | |
! | CTTTTCCAGCTTGAATTTCC+CGG | + | chr7_3:47572780-47572799 | Msa1106870:intron | 40.0% |
CAAAGGAAATGGAGTGTGTA+TGG | + | chr7_3:47572995-47573014 | Msa1106870:CDS | 40.0% | |
AATGGAGTGTGTATGGAGTT+TGG | + | chr7_3:47573002-47573021 | Msa1106870:CDS | 40.0% | |
ATGGAGTGTGTATGGAGTTT+GGG | + | chr7_3:47573003-47573022 | Msa1106870:CDS | 40.0% | |
CTATCAATCACAACCTCATC+AGG | - | chr7_3:47573041-47573060 | None:intergenic | 40.0% | |
CTAAATGCTTACGTGAACTC+AGG | - | chr7_3:47573116-47573135 | None:intergenic | 40.0% | |
TTTGGATGAAAACCTGCAGA+AGG | + | chr7_3:47573212-47573231 | Msa1106870:CDS | 40.0% | |
GGGTTTGAGGGTTTAGTGTT+AGG | - | chr7_3:47570499-47570518 | None:intergenic | 45.0% | |
GAGTGTAGAAAGGGGTTTGA+GGG | - | chr7_3:47570511-47570530 | None:intergenic | 45.0% | |
TGAGTGTAGAAAGGGGTTTG+AGG | - | chr7_3:47570512-47570531 | None:intergenic | 45.0% | |
! | ACGAGAGGGTACAAAATGAG+TGG | - | chr7_3:47570673-47570692 | None:intergenic | 45.0% |
!! | AAGAAGAGTATCATCAGCGG+GGG | - | chr7_3:47570724-47570743 | None:intergenic | 45.0% |
!! | GAAGAAGAGTATCATCAGCG+GGG | - | chr7_3:47570725-47570744 | None:intergenic | 45.0% |
!! | CGAAGAAGAGTATCATCAGC+GGG | - | chr7_3:47570726-47570745 | None:intergenic | 45.0% |
! | CACAGTCGATTTCACTGTCA+AGG | - | chr7_3:47570752-47570771 | None:intergenic | 45.0% |
TGAAATCGACTGTGCTCTTG+AGG | + | chr7_3:47570758-47570777 | Msa1106870:CDS | 45.0% | |
CACACGTTTCAGTGTAGTGT+CGG | - | chr7_3:47571200-47571219 | None:intergenic | 45.0% | |
ACTCGTGTTGTCAATGGATC+GGG | + | chr7_3:47571368-47571387 | Msa1106870:intron | 45.0% | |
TCTTGCGCTGTTACTAGTTC+AGG | - | chr7_3:47571777-47571796 | None:intergenic | 45.0% | |
GAACAACGACAGCAGTTATG+AGG | - | chr7_3:47571916-47571935 | None:intergenic | 45.0% | |
! | CTGGTTGAGGGTTTGTTTCA+AGG | + | chr7_3:47572210-47572229 | Msa1106870:intron | 45.0% |
! | GGTTTGTTTCAAGGTCAGTC+TGG | + | chr7_3:47572219-47572238 | Msa1106870:intron | 45.0% |
!! | GGTCAGTCTGGTGTTATGTT+TGG | + | chr7_3:47572231-47572250 | Msa1106870:intron | 45.0% |
GATTGTGGGACAGATCTACA+AGG | - | chr7_3:47572649-47572668 | None:intergenic | 45.0% | |
! | TCCCACAATCGGTCTTTTTC+AGG | + | chr7_3:47572659-47572678 | Msa1106870:intron | 45.0% |
CCCTGAAAAAGACCGATTGT+GGG | - | chr7_3:47572663-47572682 | None:intergenic | 45.0% | |
!! | CCCACAATCGGTCTTTTTCA+GGG | + | chr7_3:47572660-47572679 | Msa1106870:intron | 45.0% |
!!! | CCACAATCGGTCTTTTTCAG+GGG | + | chr7_3:47572661-47572680 | Msa1106870:intron | 45.0% |
AATCACCGGGAAATTCAAGC+TGG | - | chr7_3:47572788-47572807 | None:intergenic | 45.0% | |
!! | TCAAGTTGACATCCCTAACG+TGG | + | chr7_3:47572887-47572906 | Msa1106870:CDS | 45.0% |
TGGAGTGTGTATGGAGTTTG+GGG | + | chr7_3:47573004-47573023 | Msa1106870:CDS | 45.0% | |
!! | AGCTGGTCTTCAGATTCATC+CGG | - | chr7_3:47573080-47573099 | None:intergenic | 45.0% |
TGAAGACCAGCTGGTATATG+AGG | + | chr7_3:47573088-47573107 | Msa1106870:CDS | 45.0% | |
GAAGACCAGCTGGTATATGA+GGG | + | chr7_3:47573089-47573108 | Msa1106870:CDS | 45.0% | |
ACTTGAGAAAAGCCTTCTGC+AGG | - | chr7_3:47573227-47573246 | None:intergenic | 45.0% | |
TCAAGTATCTCGAGATCCGA+GGG | + | chr7_3:47573241-47573260 | Msa1106870:CDS | 45.0% | |
! | TTGTGTTGGGTGTTATCCCT+CGG | - | chr7_3:47573260-47573279 | None:intergenic | 45.0% |
ACAACAAGGAATACTTGGGG+TGG | + | chr7_3:47573313-47573332 | Msa1106870:CDS | 45.0% | |
!!! | GTTTTGGGTAATGGGGAAGC+TGG | - | chr7_3:47570476-47570495 | None:intergenic | 50.0% |
TGCGGAGGTGAGTGTAGAAA+GGG | - | chr7_3:47570520-47570539 | None:intergenic | 50.0% | |
TTGCGGAGGTGAGTGTAGAA+AGG | - | chr7_3:47570521-47570540 | None:intergenic | 50.0% | |
TTCTACACTCACCTCCGCAA+TGG | + | chr7_3:47570521-47570540 | Msa1106870:exon | 50.0% | |
AGCGGTGTACATAGCCATTG+CGG | - | chr7_3:47570538-47570557 | None:intergenic | 50.0% | |
ACTGTGGCGAAGGAGGTTAA+CGG | - | chr7_3:47570646-47570665 | None:intergenic | 50.0% | |
TCAGATACCGGACACACCTT+AGG | - | chr7_3:47571162-47571181 | None:intergenic | 50.0% | |
CTCGTGTTGTCAATGGATCG+GGG | + | chr7_3:47571369-47571388 | Msa1106870:intron | 50.0% | |
! | GTTTGGTATCATGGTGCTGG+TGG | + | chr7_3:47572248-47572267 | Msa1106870:intron | 50.0% |
TCATAGTGGCTCCGTGCTTT+CGG | - | chr7_3:47572287-47572306 | None:intergenic | 50.0% | |
GAGCCTTTGCAAAACCACAG+TGG | + | chr7_3:47572311-47572330 | Msa1106870:intron | 50.0% | |
!! | GAGCCACTGTGGTTTTGCAA+AGG | - | chr7_3:47572317-47572336 | None:intergenic | 50.0% |
AAAACCACAGTGGCTCACTG+TGG | + | chr7_3:47572321-47572340 | Msa1106870:intron | 50.0% | |
ACAGTGGCTCACTGTGGTTT+GGG | + | chr7_3:47572327-47572346 | Msa1106870:intron | 50.0% | |
CCCCTGAAAAAGACCGATTG+TGG | - | chr7_3:47572664-47572683 | None:intergenic | 50.0% | |
!!! | ATCGGTCTTTTTCAGGGGTC+AGG | + | chr7_3:47572666-47572685 | Msa1106870:intron | 50.0% |
GGGTTGTCCTCGATCTCAAA+AGG | - | chr7_3:47572813-47572832 | None:intergenic | 50.0% | |
! | TTTGAGATCGAGGACAACCC+TGG | + | chr7_3:47572813-47572832 | Msa1106870:CDS | 50.0% |
! | TCTGTTGAGGTGCCACGTTA+GGG | - | chr7_3:47572902-47572921 | None:intergenic | 50.0% |
ACCTCAACAGAGTGAGGATG+AGG | + | chr7_3:47572911-47572930 | Msa1106870:CDS | 50.0% | |
GGATGAATCTGAAGACCAGC+TGG | + | chr7_3:47573079-47573098 | Msa1106870:CDS | 50.0% | |
CTCAAGTATCTCGAGATCCG+AGG | + | chr7_3:47573240-47573259 | Msa1106870:CDS | 50.0% | |
GCGGAGGTGAGTGTAGAAAG+GGG | - | chr7_3:47570519-47570538 | None:intergenic | 55.0% | |
GGTGTACATAGCCATTGCGG+AGG | - | chr7_3:47570535-47570554 | None:intergenic | 55.0% | |
GATTGCGCTGTGGAAGGTTC+TGG | - | chr7_3:47570622-47570641 | None:intergenic | 55.0% | |
TGGTTTCACTGTGGCGAAGG+AGG | - | chr7_3:47570653-47570672 | None:intergenic | 55.0% | |
GAGTGGTTTCACTGTGGCGA+AGG | - | chr7_3:47570656-47570675 | None:intergenic | 55.0% | |
CCGTAAGCGAAGCTACGAGA+GGG | - | chr7_3:47570687-47570706 | None:intergenic | 55.0% | |
CCCTCTCGTAGCTTCGCTTA+CGG | + | chr7_3:47570684-47570703 | Msa1106870:CDS | 55.0% | |
GGGTGCTAGTGCTACAGAGT+CGG | - | chr7_3:47571123-47571142 | None:intergenic | 55.0% | |
AGTGGCGCTGTAGCACTGTA+AGG | - | chr7_3:47571421-47571440 | None:intergenic | 55.0% | |
TTGCGCCTTTGCCGAAAGCA+CGG | + | chr7_3:47572273-47572292 | Msa1106870:intron | 55.0% | |
CAAACCACAGTGAGCCACTG+TGG | - | chr7_3:47572328-47572347 | None:intergenic | 55.0% | |
CACAGTGGCTCACTGTGGTT+TGG | + | chr7_3:47572326-47572345 | Msa1106870:intron | 55.0% | |
! | CTCTGTTGAGGTGCCACGTT+AGG | - | chr7_3:47572903-47572922 | None:intergenic | 55.0% |
GCCTCATCCTCACTCTGTTG+AGG | - | chr7_3:47572915-47572934 | None:intergenic | 55.0% | |
GGTGACTGCTTTCCCTGATG+AGG | + | chr7_3:47573025-47573044 | Msa1106870:CDS | 55.0% | |
CAGGTCCCTCATATACCAGC+TGG | - | chr7_3:47573097-47573116 | None:intergenic | 55.0% | |
ATGTACACCGCTCTCCGTCG+CGG | + | chr7_3:47570546-47570565 | Msa1106870:CDS | 60.0% | |
TGGAGGAAGTTGCCGCTGCA+CGG | - | chr7_3:47570602-47570621 | None:intergenic | 60.0% | |
! | TGCGCTGTGGAAGGTTCTGG+AGG | - | chr7_3:47570619-47570638 | None:intergenic | 60.0% |
AACGGCGATTGCGCTGTGGA+AGG | - | chr7_3:47570628-47570647 | None:intergenic | 60.0% | |
GGTTAACGGCGATTGCGCTG+TGG | - | chr7_3:47570632-47570651 | None:intergenic | 60.0% | |
GCCGTAAGCGAAGCTACGAG+AGG | - | chr7_3:47570688-47570707 | None:intergenic | 60.0% | |
TGGCTCCGTGCTTTCGGCAA+AGG | - | chr7_3:47572281-47572300 | None:intergenic | 60.0% | |
CGTGGCACCTCAACAGAGTG+AGG | + | chr7_3:47572905-47572924 | Msa1106870:CDS | 60.0% | |
! | AGAGAGGAGAGGGAGTGCGG+CGG | - | chr7_3:47570577-47570596 | None:intergenic | 65.0% |
GCGAGAGAGGAGAGGGAGTG+CGG | - | chr7_3:47570580-47570599 | None:intergenic | 65.0% | |
CTGCACGGCGAGAGAGGAGA+GGG | - | chr7_3:47570587-47570606 | None:intergenic | 65.0% | |
TCTCCTCTCTCGCCGTGCAG+CGG | + | chr7_3:47570587-47570606 | Msa1106870:CDS | 65.0% | |
GCTGCACGGCGAGAGAGGAG+AGG | - | chr7_3:47570588-47570607 | None:intergenic | 70.0% | |
TTGCCGCTGCACGGCGAGAG+AGG | - | chr7_3:47570593-47570612 | None:intergenic | 70.0% | |
! | GAGGAGAGGGAGTGCGGCGG+CGG | - | chr7_3:47570574-47570593 | None:intergenic | 75.0% |
! | GGCGGCGCCGCGACGGAGAG+CGG | - | chr7_3:47570556-47570575 | None:intergenic | 85.0% |
! | GTGCGGCGGCGGCGCCGCGA+CGG | - | chr7_3:47570563-47570582 | None:intergenic | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 47570472 | 47573646 | 47570472 | ID=Msa1106870;Name=Msa1106870 |
chr7_3 | mRNA | 47570472 | 47573646 | 47570472 | ID=Msa1106870-mRNA-1;Parent=Msa1106870;Name=Msa1106870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=68|1|1|1|1|1|3|278|253 |
chr7_3 | exon | 47570472 | 47570806 | 47570472 | ID=Msa1106870-mRNA-1:exon:9687;Parent=Msa1106870-mRNA-1 |
chr7_3 | exon | 47572789 | 47573123 | 47572789 | ID=Msa1106870-mRNA-1:exon:9688;Parent=Msa1106870-mRNA-1 |
chr7_3 | exon | 47573209 | 47573646 | 47573209 | ID=Msa1106870-mRNA-1:exon:9689;Parent=Msa1106870-mRNA-1 |
chr7_3 | five_prime_UTR | 47570472 | 47570539 | 47570472 | ID=Msa1106870-mRNA-1:five_prime_utr;Parent=Msa1106870-mRNA-1 |
chr7_3 | CDS | 47570540 | 47570806 | 47570540 | ID=Msa1106870-mRNA-1:cds;Parent=Msa1106870-mRNA-1 |
chr7_3 | CDS | 47572789 | 47573123 | 47572789 | ID=Msa1106870-mRNA-1:cds;Parent=Msa1106870-mRNA-1 |
chr7_3 | CDS | 47573209 | 47573368 | 47573209 | ID=Msa1106870-mRNA-1:cds;Parent=Msa1106870-mRNA-1 |
chr7_3 | three_prime_UTR | 47573369 | 47573646 | 47573369 | ID=Msa1106870-mRNA-1:three_prime_utr;Parent=Msa1106870-mRNA-1 |
Gene Sequence |
Protein sequence |