AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106870 MtrunA17_Chr7g0239661 93.333 255 14 2 1 253 1 254 3.76e-169 467
Msa1106870 MtrunA17_Chr5g0435861 46.614 251 112 5 20 252 8 254 2.47e-68 211
Msa1106870 MtrunA17_Chr4g0001071 38.365 159 90 3 98 253 83 236 1.36e-28 108
Msa1106870 MtrunA17_Chr1g0149801 31.602 231 140 9 28 253 16 233 2.02e-20 87.0
Msa1106870 MtrunA17_Chr7g0257161 46.667 60 32 0 194 253 141 200 1.55e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106870 AT5G02050.1 47.232 271 121 6 1 253 1 267 6.54e-69 213
Msa1106870 AT3G55605.1 44.528 265 128 8 1 253 1 258 5.92e-62 195
Msa1106870 AT2G39795.1 43.191 257 135 8 1 253 1 250 9.13e-60 189
Msa1106870 AT5G05990.1 38.521 257 134 7 18 252 4 258 2.68e-47 158
Msa1106870 AT2G39790.1 33.597 253 153 8 1 252 1 239 1.84e-34 124
Msa1106870 AT1G15870.1 31.308 214 131 8 47 253 37 241 7.19e-27 104
Msa1106870 AT1G80720.2 31.313 198 125 5 58 253 53 241 1.26e-22 93.2
Msa1106870 AT1G80720.1 31.313 198 125 5 58 253 1 189 1.75e-22 91.7
Msa1106870 AT4G31930.1 31.535 241 142 9 19 253 11 234 4.21e-19 83.6
Msa1106870 AT4G32605.1 31.915 94 60 1 164 253 126 219 6.77e-11 60.8

Find 93 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCATCCGGATTCTTTA+TGG 0.182617 7_3:-47573066 None:intergenic
AGGGTTTAGTGTTAGGGTTT+TGG 0.197741 7_3:-47570489 None:intergenic
GGGTTTGAGGGTTTAGTGTT+AGG 0.271227 7_3:-47570496 None:intergenic
ATGGAGTGTGTATGGAGTTT+GGG 0.281286 7_3:+47573003 Msa1106870:CDS
TTGAGATGTTATCTATAGTT+TGG 0.302035 7_3:+47573614 Msa1106870:three_prime_UTR
CTCTGTTGAGGTGCCACGTT+AGG 0.340860 7_3:-47572900 None:intergenic
AATGGAGTGTGTATGGAGTT+TGG 0.345306 7_3:+47573002 Msa1106870:CDS
CTATCAATCACAACCTCATC+AGG 0.345649 7_3:-47573038 None:intergenic
CTATCATTCTCATTCTTCTC+GGG 0.360091 7_3:-47572939 None:intergenic
CAAAGACAACAAGGAATACT+TGG 0.378496 7_3:+47573308 Msa1106870:CDS
GCTATCATTCTCATTCTTCT+CGG 0.381925 7_3:-47572940 None:intergenic
GATTGCGCTGTGGAAGGTTC+TGG 0.386945 7_3:-47570619 None:intergenic
CAAAGGAAATGGAGTGTGTA+TGG 0.388939 7_3:+47572995 Msa1106870:CDS
AGTTGAATAGTTCTTTCTCC+AGG 0.396432 7_3:-47572831 None:intergenic
GGTTTGAGGGTTTAGTGTTA+GGG 0.399619 7_3:-47570495 None:intergenic
GAGTGTAGAAAGGGGTTTGA+GGG 0.401665 7_3:-47570508 None:intergenic
GAGGAGAGGGAGTGCGGCGG+CGG 0.404148 7_3:-47570571 None:intergenic
AAACAAATGAGACCTATCTA+TGG 0.406555 7_3:-47573574 None:intergenic
TAACCATCAGATCATATTAC+AGG 0.408949 7_3:-47573461 None:intergenic
GTGCGGCGGCGGCGCCGCGA+CGG 0.413744 7_3:-47570560 None:intergenic
GGACTCTTGTATTTGATTGA+AGG 0.418794 7_3:-47573553 None:intergenic
GGCGGCGCCGCGACGGAGAG+CGG 0.421645 7_3:-47570553 None:intergenic
TGAAGACCAGCTGGTATATG+AGG 0.426221 7_3:+47573088 Msa1106870:CDS
ATGCATTTAAACTAAAATCA+AGG 0.442879 7_3:-47573431 None:intergenic
GACTCTTGTATTTGATTGAA+GGG 0.453370 7_3:-47573552 None:intergenic
TGCGGAGGTGAGTGTAGAAA+GGG 0.487812 7_3:-47570517 None:intergenic
TTGAAAATAGTCACAACTAA+AGG 0.491752 7_3:-47572975 None:intergenic
AGCTGGTCTTCAGATTCATC+CGG 0.494031 7_3:-47573077 None:intergenic
TTTGAGATCGAGGACAACCC+TGG 0.494413 7_3:+47572813 Msa1106870:CDS
ACTTGAGAAAAGCCTTCTGC+AGG 0.495315 7_3:-47573224 None:intergenic
TAGCTTGTCCATAAAGAATC+CGG 0.497260 7_3:+47573058 Msa1106870:CDS
TGGAGGAAGTTGCCGCTGCA+CGG 0.501833 7_3:-47570599 None:intergenic
TGAGTGTAGAAAGGGGTTTG+AGG 0.505609 7_3:-47570509 None:intergenic
TTGCCGCTGCACGGCGAGAG+AGG 0.509670 7_3:-47570590 None:intergenic
GGGTTGTCCTCGATCTCAAA+AGG 0.511746 7_3:-47572810 None:intergenic
CGAAGAAGAGTATCATCAGC+GGG 0.511851 7_3:-47570723 None:intergenic
TCTGTTGAGGTGCCACGTTA+GGG 0.512444 7_3:-47572899 None:intergenic
TTGCGGAGGTGAGTGTAGAA+AGG 0.517086 7_3:-47570518 None:intergenic
GTTGAATAGTTCTTTCTCCA+GGG 0.519495 7_3:-47572830 None:intergenic
AAATACAAGAGTCCATAGAT+AGG 0.526268 7_3:+47573562 Msa1106870:three_prime_UTR
AGAGAGGAGAGGGAGTGCGG+CGG 0.530798 7_3:-47570574 None:intergenic
GGTGACTGCTTTCCCTGATG+AGG 0.538518 7_3:+47573025 Msa1106870:CDS
ACCTCAACAGAGTGAGGATG+AGG 0.540010 7_3:+47572911 Msa1106870:CDS
GAGTGGTTTCACTGTGGCGA+AGG 0.541359 7_3:-47570653 None:intergenic
CTGCACGGCGAGAGAGGAGA+GGG 0.542154 7_3:-47570584 None:intergenic
TGAAATCGACTGTGCTCTTG+AGG 0.545067 7_3:+47570758 Msa1106870:CDS
CCCTCTCGTAGCTTCGCTTA+CGG 0.550555 7_3:+47570684 Msa1106870:CDS
ACTGTGGCGAAGGAGGTTAA+CGG 0.552843 7_3:-47570643 None:intergenic
GCTCTTGAGGATAATAATGA+AGG 0.555442 7_3:+47570771 Msa1106870:CDS
TTGTGTTGGGTGTTATCCCT+CGG 0.555715 7_3:-47573257 None:intergenic
GCCTCATCCTCACTCTGTTG+AGG 0.559817 7_3:-47572912 None:intergenic
TGCATTTAAACTAAAATCAA+GGG 0.563695 7_3:-47573430 None:intergenic
AAAGACAACAAGGAATACTT+GGG 0.563940 7_3:+47573309 Msa1106870:CDS
AACGGCGATTGCGCTGTGGA+AGG 0.565623 7_3:-47570625 None:intergenic
GATCTCAAAAGGAAAATCAC+CGG 0.567645 7_3:-47572799 None:intergenic
GGATGAATCTGAAGACCAGC+TGG 0.570489 7_3:+47573079 Msa1106870:CDS
CAGGTCCCTCATATACCAGC+TGG 0.571273 7_3:-47573094 None:intergenic
TGGTTTCACTGTGGCGAAGG+AGG 0.574627 7_3:-47570650 None:intergenic
GCGAGAGAGGAGAGGGAGTG+CGG 0.575299 7_3:-47570577 None:intergenic
TATCATTCTCATTCTTCTCG+GGG 0.576332 7_3:-47572938 None:intergenic
CTCAAGTATCTCGAGATCCG+AGG 0.584465 7_3:+47573240 Msa1106870:CDS
CACAGTCGATTTCACTGTCA+AGG 0.589925 7_3:-47570749 None:intergenic
TTTGGATGAAAACCTGCAGA+AGG 0.596555 7_3:+47573212 Msa1106870:CDS
TCAAGTATCTCGAGATCCGA+GGG 0.601222 7_3:+47573241 Msa1106870:CDS
TTCTACACTCACCTCCGCAA+TGG 0.601289 7_3:+47570521 Msa1106870:exon
CTAAATGCTTACGTGAACTC+AGG 0.611960 7_3:-47573113 None:intergenic
TCTCCTCTCTCGCCGTGCAG+CGG 0.617355 7_3:+47570587 Msa1106870:CDS
ATCTCAAAAGGAAAATCACC+GGG 0.618030 7_3:-47572798 None:intergenic
TGGAGTGTGTATGGAGTTTG+GGG 0.622811 7_3:+47573004 Msa1106870:CDS
TGCGCTGTGGAAGGTTCTGG+AGG 0.628252 7_3:-47570616 None:intergenic
GAAGACCAGCTGGTATATGA+GGG 0.628639 7_3:+47573089 Msa1106870:CDS
TATCAATCACAACCTCATCA+GGG 0.630563 7_3:-47573037 None:intergenic
GCTGCACGGCGAGAGAGGAG+AGG 0.631466 7_3:-47570585 None:intergenic
TGTCCTGTAATATGATCTGA+TGG 0.633731 7_3:+47573458 Msa1106870:three_prime_UTR
TCGAAGAAGAGTATCATCAG+CGG 0.634573 7_3:-47570724 None:intergenic
TCTATAGTTTGGCTAGACGA+AGG 0.636043 7_3:+47573625 Msa1106870:three_prime_UTR
CGTGGCACCTCAACAGAGTG+AGG 0.643427 7_3:+47572905 Msa1106870:CDS
CATGTTCAACAAAGACAACA+AGG 0.647062 7_3:+47573299 Msa1106870:CDS
ACAACAAGGAATACTTGGGG+TGG 0.664017 7_3:+47573313 Msa1106870:CDS
AGCGGTGTACATAGCCATTG+CGG 0.666792 7_3:-47570535 None:intergenic
GGTTAACGGCGATTGCGCTG+TGG 0.671069 7_3:-47570629 None:intergenic
ACGAGAGGGTACAAAATGAG+TGG 0.672739 7_3:-47570670 None:intergenic
AAGAAGAGTATCATCAGCGG+GGG 0.679029 7_3:-47570721 None:intergenic
TATGATCTGATGGTTACTTG+AGG 0.683829 7_3:+47573468 Msa1106870:three_prime_UTR
GCCGTAAGCGAAGCTACGAG+AGG 0.685303 7_3:-47570685 None:intergenic
ATGTACACCGCTCTCCGTCG+CGG 0.689738 7_3:+47570546 Msa1106870:CDS
TCAAGTTGACATCCCTAACG+TGG 0.692064 7_3:+47572887 Msa1106870:CDS
GCGGAGGTGAGTGTAGAAAG+GGG 0.698638 7_3:-47570516 None:intergenic
CCGTAAGCGAAGCTACGAGA+GGG 0.698699 7_3:-47570684 None:intergenic
GGTGTACATAGCCATTGCGG+AGG 0.709206 7_3:-47570532 None:intergenic
GAAGAAGAGTATCATCAGCG+GGG 0.713416 7_3:-47570722 None:intergenic
CAAAATGAGTGGTTTCACTG+TGG 0.726427 7_3:-47570659 None:intergenic
AAGACAACAAGGAATACTTG+GGG 0.756411 7_3:+47573310 Msa1106870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACTTAAAAACAAA+TGG - chr7_3:47570825-47570844 None:intergenic 10.0%
!!! AAAAAATTACGTTTGTTAAA+AGG - chr7_3:47570797-47570816 None:intergenic 15.0%
!!! AGTTTCAATTTTTTTTTTGT+TGG + chr7_3:47570920-47570939 Msa1106870:intron 15.0%
!!! GTTTCAATTTTTTTTTTGTT+GGG + chr7_3:47570921-47570940 Msa1106870:intron 15.0%
!! AAGATGTAAAAATTCTATAA+TGG + chr7_3:47571091-47571110 Msa1106870:intron 15.0%
!! AAAAACAAAACTTCACAAAA+GGG - chr7_3:47570996-47571015 None:intergenic 20.0%
!! TAAAAACAAAACTTCACAAA+AGG - chr7_3:47570997-47571016 None:intergenic 20.0%
!!! TGAAGTTTTGTTTTTATTAG+TGG + chr7_3:47571001-47571020 Msa1106870:intron 20.0%
!!! TAGAATTTTTACATCTTACA+AGG - chr7_3:47571088-47571107 None:intergenic 20.0%
!!! TCATTTTCTCAAAATATTAC+TGG + chr7_3:47571312-47571331 Msa1106870:intron 20.0%
!!! TTCATCCAATATCATTTTTT+CGG - chr7_3:47571638-47571657 None:intergenic 20.0%
!!! TTTAGTTGATGTAAATAAAG+TGG + chr7_3:47571692-47571711 Msa1106870:intron 20.0%
!! AAATATAAACAAAAATGGAG+TGG - chr7_3:47571985-47572004 None:intergenic 20.0%
!! GAGTGAAATATAAACAAAAA+TGG - chr7_3:47571990-47572009 None:intergenic 20.0%
!! TAAATCCAGACTTAAAAAAT+AGG - chr7_3:47572028-47572047 None:intergenic 20.0%
!! TGCATTTAAACTAAAATCAA+GGG - chr7_3:47573433-47573452 None:intergenic 20.0%
!! ATGCATTTAAACTAAAATCA+AGG - chr7_3:47573434-47573453 None:intergenic 20.0%
!!! GCTAATAATTTTTGAAAACT+TGG + chr7_3:47573493-47573512 Msa1106870:three_prime_UTR 20.0%
! AAAACAAAACTTCACAAAAG+GGG - chr7_3:47570995-47571014 None:intergenic 25.0%
! TGGATCTTAATAGAATGATA+AGG + chr7_3:47571021-47571040 Msa1106870:intron 25.0%
! GGATCTTAATAGAATGATAA+GGG + chr7_3:47571022-47571041 Msa1106870:intron 25.0%
!! AGAATGATAAGGGTTTTTAT+AGG + chr7_3:47571032-47571051 Msa1106870:intron 25.0%
!! GAATGATAAGGGTTTTTATA+GGG + chr7_3:47571033-47571052 Msa1106870:intron 25.0%
!! TTTTACATCTTACAAGGAAA+TGG - chr7_3:47571082-47571101 None:intergenic 25.0%
!! CATGTTCTGAACATTATTAT+TGG + chr7_3:47571237-47571256 Msa1106870:intron 25.0%
!! AGTGTCAATAATATTTCTAC+CGG + chr7_3:47571866-47571885 Msa1106870:intron 25.0%
! AAATAGGTCATTGAAACATA+CGG - chr7_3:47572012-47572031 None:intergenic 25.0%
!!! AATGACCTATTTTTTAAGTC+TGG + chr7_3:47572020-47572039 Msa1106870:intron 25.0%
!! ATTTACATCTAATGGGTAAA+AGG - chr7_3:47572164-47572183 None:intergenic 25.0%
! ATGAGCAATTTACATCTAAT+GGG - chr7_3:47572171-47572190 None:intergenic 25.0%
! AATGAGCAATTTACATCTAA+TGG - chr7_3:47572172-47572191 None:intergenic 25.0%
! AAGAGATATTCAAATCTACA+AGG - chr7_3:47572405-47572424 None:intergenic 25.0%
!!! AAACCTTTTTTTTAGTCTGA+AGG + chr7_3:47572433-47572452 Msa1106870:intron 25.0%
! TTGAAAATAGTCACAACTAA+AGG - chr7_3:47572978-47572997 None:intergenic 25.0%
!! TTAGTTGTGACTATTTTCAA+AGG + chr7_3:47572978-47572997 Msa1106870:CDS 25.0%
! TTGAGATGTTATCTATAGTT+TGG + chr7_3:47573614-47573633 Msa1106870:three_prime_UTR 25.0%
! TGTAGCAGAATTTGAACTTT+TGG - chr7_3:47571571-47571590 None:intergenic 30.0%
TTCCACCGAAAAAATGATAT+TGG + chr7_3:47571630-47571649 Msa1106870:intron 30.0%
!!! ATCCAATATCATTTTTTCGG+TGG - chr7_3:47571635-47571654 None:intergenic 30.0%
!! GGATTTATTTTTCTCTGTCT+TGG + chr7_3:47572041-47572060 Msa1106870:intron 30.0%
!! AAAACATGCTTTAACTTGAC+TGG + chr7_3:47572129-47572148 Msa1106870:intron 30.0%
! TCAAATGTTGTTTATTGCTC+TGG + chr7_3:47572191-47572210 Msa1106870:intron 30.0%
GTAGCAAATCAAAGAATCTT+TGG - chr7_3:47572367-47572386 None:intergenic 30.0%
CAACCTTCAGACTAAAAAAA+AGG - chr7_3:47572439-47572458 None:intergenic 30.0%
! GTGACTATTTTCAAAGGAAA+TGG + chr7_3:47572984-47573003 Msa1106870:CDS 30.0%
!! TGTTCATTTTTACAGCGATT+TGG + chr7_3:47573194-47573213 Msa1106870:intron 30.0%
! TGTAAAAAGTTGGTTGTGTT+GGG - chr7_3:47573273-47573292 None:intergenic 30.0%
CATGTATTCCTGTAAAAAGT+TGG - chr7_3:47573283-47573302 None:intergenic 30.0%
AAAGACAACAAGGAATACTT+GGG + chr7_3:47573309-47573328 Msa1106870:CDS 30.0%
TAACCATCAGATCATATTAC+AGG - chr7_3:47573464-47573483 None:intergenic 30.0%
GACTCTTGTATTTGATTGAA+GGG - chr7_3:47573555-47573574 None:intergenic 30.0%
AAATACAAGAGTCCATAGAT+AGG + chr7_3:47573562-47573581 Msa1106870:three_prime_UTR 30.0%
AAACAAATGAGACCTATCTA+TGG - chr7_3:47573577-47573596 None:intergenic 30.0%
GCTCTTGAGGATAATAATGA+AGG + chr7_3:47570771-47570790 Msa1106870:CDS 35.0%
TTATAGGGTTGTTAGTGTTG+TGG + chr7_3:47571048-47571067 Msa1106870:intron 35.0%
! TAGGATTTGATCTGAAGTGT+GGG - chr7_3:47571143-47571162 None:intergenic 35.0%
! TTAGGATTTGATCTGAAGTG+TGG - chr7_3:47571144-47571163 None:intergenic 35.0%
ACACTTCAGATCAAATCCTA+AGG + chr7_3:47571143-47571162 Msa1106870:intron 35.0%
TCAATGTGTCAGTACTTCAT+AGG + chr7_3:47571262-47571281 Msa1106870:intron 35.0%
TGTTAGTGTCAGTACTTCAT+AGG + chr7_3:47571343-47571362 Msa1106870:intron 35.0%
!! TACAGAGTGTTGTCAAATAG+TGG - chr7_3:47571439-47571458 None:intergenic 35.0%
ACACTGTAGTGTTATATCAC+TGG + chr7_3:47571504-47571523 Msa1106870:intron 35.0%
! AGCAGAATTTGAACTTTTGG+TGG - chr7_3:47571568-47571587 None:intergenic 35.0%
ACTTTGAGCTACATTCAAAG+TGG - chr7_3:47571667-47571686 None:intergenic 35.0%
TCAATTGTGTTGTGTGTATG+TGG + chr7_3:47571729-47571748 Msa1106870:intron 35.0%
CAATTGTGTTGTGTGTATGT+GGG + chr7_3:47571730-47571749 Msa1106870:intron 35.0%
AAGATTTGTCCTTTGTAGTC+TGG + chr7_3:47571793-47571812 Msa1106870:intron 35.0%
AGATTTGTCCTTTGTAGTCT+GGG + chr7_3:47571794-47571813 Msa1106870:intron 35.0%
! GTCTTCTTTTGCTACTCATT+TGG + chr7_3:47571823-47571842 Msa1106870:intron 35.0%
CATGTGCAAAACTATGATAC+CGG - chr7_3:47571888-47571907 None:intergenic 35.0%
TTGTTTATTGCTCTGGTTGA+GGG + chr7_3:47572198-47572217 Msa1106870:intron 35.0%
!! TGGTGTTATGTTTGGTATCA+TGG + chr7_3:47572239-47572258 Msa1106870:intron 35.0%
CATTATCTGCAGATTATCTG+TGG + chr7_3:47572494-47572513 Msa1106870:intron 35.0%
TCTGTGGTATAAGAAAATGC+AGG + chr7_3:47572510-47572529 Msa1106870:intron 35.0%
GAGTGTCATATACTGATGAT+TGG + chr7_3:47572573-47572592 Msa1106870:intron 35.0%
ATATACTGATGATTGGCACT+AGG + chr7_3:47572580-47572599 Msa1106870:intron 35.0%
ATCTCAAAAGGAAAATCACC+GGG - chr7_3:47572801-47572820 None:intergenic 35.0%
GATCTCAAAAGGAAAATCAC+CGG - chr7_3:47572802-47572821 None:intergenic 35.0%
!!! TGATTTTCCTTTTGAGATCG+AGG + chr7_3:47572803-47572822 Msa1106870:CDS 35.0%
GTTGAATAGTTCTTTCTCCA+GGG - chr7_3:47572833-47572852 None:intergenic 35.0%
AGTTGAATAGTTCTTTCTCC+AGG - chr7_3:47572834-47572853 None:intergenic 35.0%
TATCATTCTCATTCTTCTCG+GGG - chr7_3:47572941-47572960 None:intergenic 35.0%
CTATCATTCTCATTCTTCTC+GGG - chr7_3:47572942-47572961 None:intergenic 35.0%
GCTATCATTCTCATTCTTCT+CGG - chr7_3:47572943-47572962 None:intergenic 35.0%
TATCAATCACAACCTCATCA+GGG - chr7_3:47573040-47573059 None:intergenic 35.0%
! TAGCTTGTCCATAAAGAATC+CGG + chr7_3:47573058-47573077 Msa1106870:CDS 35.0%
AGATTCATCCGGATTCTTTA+TGG - chr7_3:47573069-47573088 None:intergenic 35.0%
! CTGTAAAAAGTTGGTTGTGT+TGG - chr7_3:47573274-47573293 None:intergenic 35.0%
! CAACACAACCAACTTTTTAC+AGG + chr7_3:47573272-47573291 Msa1106870:CDS 35.0%
CATGTTCAACAAAGACAACA+AGG + chr7_3:47573299-47573318 Msa1106870:CDS 35.0%
CAAAGACAACAAGGAATACT+TGG + chr7_3:47573308-47573327 Msa1106870:CDS 35.0%
AAGACAACAAGGAATACTTG+GGG + chr7_3:47573310-47573329 Msa1106870:CDS 35.0%
TGTCCTGTAATATGATCTGA+TGG + chr7_3:47573458-47573477 Msa1106870:three_prime_UTR 35.0%
TATGATCTGATGGTTACTTG+AGG + chr7_3:47573468-47573487 Msa1106870:three_prime_UTR 35.0%
GGACTCTTGTATTTGATTGA+AGG - chr7_3:47573556-47573575 None:intergenic 35.0%
!!! TGTTAGGGTTTTGGGTAATG+GGG - chr7_3:47570483-47570502 None:intergenic 40.0%
!!! GTGTTAGGGTTTTGGGTAAT+GGG - chr7_3:47570484-47570503 None:intergenic 40.0%
!!! AGTGTTAGGGTTTTGGGTAA+TGG - chr7_3:47570485-47570504 None:intergenic 40.0%
! GGGTTTAGTGTTAGGGTTTT+GGG - chr7_3:47570491-47570510 None:intergenic 40.0%
! AGGGTTTAGTGTTAGGGTTT+TGG - chr7_3:47570492-47570511 None:intergenic 40.0%
GGTTTGAGGGTTTAGTGTTA+GGG - chr7_3:47570498-47570517 None:intergenic 40.0%
CAAAATGAGTGGTTTCACTG+TGG - chr7_3:47570662-47570681 None:intergenic 40.0%
!! TCGAAGAAGAGTATCATCAG+CGG - chr7_3:47570727-47570746 None:intergenic 40.0%
ATCAAATCCTAAGGTGTGTC+CGG + chr7_3:47571152-47571171 Msa1106870:intron 40.0%
CAATGACACATGTCAGATAC+CGG - chr7_3:47571174-47571193 None:intergenic 40.0%
TAGGTTACTCGTGTTGTCAA+TGG + chr7_3:47571362-47571381 Msa1106870:intron 40.0%
TACTCGTGTTGTCAATGGAT+CGG + chr7_3:47571367-47571386 Msa1106870:intron 40.0%
CAAGCAGTGTTGTCAAATGT+CGG - chr7_3:47571535-47571554 None:intergenic 40.0%
ACAACAAACCCAGACTACAA+AGG - chr7_3:47571805-47571824 None:intergenic 40.0%
GTTGTTTATTGCTCTGGTTG+AGG + chr7_3:47572197-47572216 Msa1106870:intron 40.0%
TATGTTTGGTATCATGGTGC+TGG + chr7_3:47572245-47572264 Msa1106870:intron 40.0%
GCAAAGGCTCAAAATCATAG+TGG - chr7_3:47572301-47572320 None:intergenic 40.0%
CAAAGAATCTTTGGCATCAC+TGG - chr7_3:47572358-47572377 None:intergenic 40.0%
ATTGTGGGACAGATCTACAA+GGG - chr7_3:47572648-47572667 None:intergenic 40.0%
TTGTAGATCTGTCCCACAAT+CGG + chr7_3:47572648-47572667 Msa1106870:intron 40.0%
! CTTTTCCAGCTTGAATTTCC+CGG + chr7_3:47572780-47572799 Msa1106870:intron 40.0%
CAAAGGAAATGGAGTGTGTA+TGG + chr7_3:47572995-47573014 Msa1106870:CDS 40.0%
AATGGAGTGTGTATGGAGTT+TGG + chr7_3:47573002-47573021 Msa1106870:CDS 40.0%
ATGGAGTGTGTATGGAGTTT+GGG + chr7_3:47573003-47573022 Msa1106870:CDS 40.0%
CTATCAATCACAACCTCATC+AGG - chr7_3:47573041-47573060 None:intergenic 40.0%
CTAAATGCTTACGTGAACTC+AGG - chr7_3:47573116-47573135 None:intergenic 40.0%
TTTGGATGAAAACCTGCAGA+AGG + chr7_3:47573212-47573231 Msa1106870:CDS 40.0%
GGGTTTGAGGGTTTAGTGTT+AGG - chr7_3:47570499-47570518 None:intergenic 45.0%
GAGTGTAGAAAGGGGTTTGA+GGG - chr7_3:47570511-47570530 None:intergenic 45.0%
TGAGTGTAGAAAGGGGTTTG+AGG - chr7_3:47570512-47570531 None:intergenic 45.0%
! ACGAGAGGGTACAAAATGAG+TGG - chr7_3:47570673-47570692 None:intergenic 45.0%
!! AAGAAGAGTATCATCAGCGG+GGG - chr7_3:47570724-47570743 None:intergenic 45.0%
!! GAAGAAGAGTATCATCAGCG+GGG - chr7_3:47570725-47570744 None:intergenic 45.0%
!! CGAAGAAGAGTATCATCAGC+GGG - chr7_3:47570726-47570745 None:intergenic 45.0%
! CACAGTCGATTTCACTGTCA+AGG - chr7_3:47570752-47570771 None:intergenic 45.0%
TGAAATCGACTGTGCTCTTG+AGG + chr7_3:47570758-47570777 Msa1106870:CDS 45.0%
CACACGTTTCAGTGTAGTGT+CGG - chr7_3:47571200-47571219 None:intergenic 45.0%
ACTCGTGTTGTCAATGGATC+GGG + chr7_3:47571368-47571387 Msa1106870:intron 45.0%
TCTTGCGCTGTTACTAGTTC+AGG - chr7_3:47571777-47571796 None:intergenic 45.0%
GAACAACGACAGCAGTTATG+AGG - chr7_3:47571916-47571935 None:intergenic 45.0%
! CTGGTTGAGGGTTTGTTTCA+AGG + chr7_3:47572210-47572229 Msa1106870:intron 45.0%
! GGTTTGTTTCAAGGTCAGTC+TGG + chr7_3:47572219-47572238 Msa1106870:intron 45.0%
!! GGTCAGTCTGGTGTTATGTT+TGG + chr7_3:47572231-47572250 Msa1106870:intron 45.0%
GATTGTGGGACAGATCTACA+AGG - chr7_3:47572649-47572668 None:intergenic 45.0%
! TCCCACAATCGGTCTTTTTC+AGG + chr7_3:47572659-47572678 Msa1106870:intron 45.0%
CCCTGAAAAAGACCGATTGT+GGG - chr7_3:47572663-47572682 None:intergenic 45.0%
!! CCCACAATCGGTCTTTTTCA+GGG + chr7_3:47572660-47572679 Msa1106870:intron 45.0%
!!! CCACAATCGGTCTTTTTCAG+GGG + chr7_3:47572661-47572680 Msa1106870:intron 45.0%
AATCACCGGGAAATTCAAGC+TGG - chr7_3:47572788-47572807 None:intergenic 45.0%
!! TCAAGTTGACATCCCTAACG+TGG + chr7_3:47572887-47572906 Msa1106870:CDS 45.0%
TGGAGTGTGTATGGAGTTTG+GGG + chr7_3:47573004-47573023 Msa1106870:CDS 45.0%
!! AGCTGGTCTTCAGATTCATC+CGG - chr7_3:47573080-47573099 None:intergenic 45.0%
TGAAGACCAGCTGGTATATG+AGG + chr7_3:47573088-47573107 Msa1106870:CDS 45.0%
GAAGACCAGCTGGTATATGA+GGG + chr7_3:47573089-47573108 Msa1106870:CDS 45.0%
ACTTGAGAAAAGCCTTCTGC+AGG - chr7_3:47573227-47573246 None:intergenic 45.0%
TCAAGTATCTCGAGATCCGA+GGG + chr7_3:47573241-47573260 Msa1106870:CDS 45.0%
! TTGTGTTGGGTGTTATCCCT+CGG - chr7_3:47573260-47573279 None:intergenic 45.0%
ACAACAAGGAATACTTGGGG+TGG + chr7_3:47573313-47573332 Msa1106870:CDS 45.0%
!!! GTTTTGGGTAATGGGGAAGC+TGG - chr7_3:47570476-47570495 None:intergenic 50.0%
TGCGGAGGTGAGTGTAGAAA+GGG - chr7_3:47570520-47570539 None:intergenic 50.0%
TTGCGGAGGTGAGTGTAGAA+AGG - chr7_3:47570521-47570540 None:intergenic 50.0%
TTCTACACTCACCTCCGCAA+TGG + chr7_3:47570521-47570540 Msa1106870:exon 50.0%
AGCGGTGTACATAGCCATTG+CGG - chr7_3:47570538-47570557 None:intergenic 50.0%
ACTGTGGCGAAGGAGGTTAA+CGG - chr7_3:47570646-47570665 None:intergenic 50.0%
TCAGATACCGGACACACCTT+AGG - chr7_3:47571162-47571181 None:intergenic 50.0%
CTCGTGTTGTCAATGGATCG+GGG + chr7_3:47571369-47571388 Msa1106870:intron 50.0%
! GTTTGGTATCATGGTGCTGG+TGG + chr7_3:47572248-47572267 Msa1106870:intron 50.0%
TCATAGTGGCTCCGTGCTTT+CGG - chr7_3:47572287-47572306 None:intergenic 50.0%
GAGCCTTTGCAAAACCACAG+TGG + chr7_3:47572311-47572330 Msa1106870:intron 50.0%
!! GAGCCACTGTGGTTTTGCAA+AGG - chr7_3:47572317-47572336 None:intergenic 50.0%
AAAACCACAGTGGCTCACTG+TGG + chr7_3:47572321-47572340 Msa1106870:intron 50.0%
ACAGTGGCTCACTGTGGTTT+GGG + chr7_3:47572327-47572346 Msa1106870:intron 50.0%
CCCCTGAAAAAGACCGATTG+TGG - chr7_3:47572664-47572683 None:intergenic 50.0%
!!! ATCGGTCTTTTTCAGGGGTC+AGG + chr7_3:47572666-47572685 Msa1106870:intron 50.0%
GGGTTGTCCTCGATCTCAAA+AGG - chr7_3:47572813-47572832 None:intergenic 50.0%
! TTTGAGATCGAGGACAACCC+TGG + chr7_3:47572813-47572832 Msa1106870:CDS 50.0%
! TCTGTTGAGGTGCCACGTTA+GGG - chr7_3:47572902-47572921 None:intergenic 50.0%
ACCTCAACAGAGTGAGGATG+AGG + chr7_3:47572911-47572930 Msa1106870:CDS 50.0%
GGATGAATCTGAAGACCAGC+TGG + chr7_3:47573079-47573098 Msa1106870:CDS 50.0%
CTCAAGTATCTCGAGATCCG+AGG + chr7_3:47573240-47573259 Msa1106870:CDS 50.0%
GCGGAGGTGAGTGTAGAAAG+GGG - chr7_3:47570519-47570538 None:intergenic 55.0%
GGTGTACATAGCCATTGCGG+AGG - chr7_3:47570535-47570554 None:intergenic 55.0%
GATTGCGCTGTGGAAGGTTC+TGG - chr7_3:47570622-47570641 None:intergenic 55.0%
TGGTTTCACTGTGGCGAAGG+AGG - chr7_3:47570653-47570672 None:intergenic 55.0%
GAGTGGTTTCACTGTGGCGA+AGG - chr7_3:47570656-47570675 None:intergenic 55.0%
CCGTAAGCGAAGCTACGAGA+GGG - chr7_3:47570687-47570706 None:intergenic 55.0%
CCCTCTCGTAGCTTCGCTTA+CGG + chr7_3:47570684-47570703 Msa1106870:CDS 55.0%
GGGTGCTAGTGCTACAGAGT+CGG - chr7_3:47571123-47571142 None:intergenic 55.0%
AGTGGCGCTGTAGCACTGTA+AGG - chr7_3:47571421-47571440 None:intergenic 55.0%
TTGCGCCTTTGCCGAAAGCA+CGG + chr7_3:47572273-47572292 Msa1106870:intron 55.0%
CAAACCACAGTGAGCCACTG+TGG - chr7_3:47572328-47572347 None:intergenic 55.0%
CACAGTGGCTCACTGTGGTT+TGG + chr7_3:47572326-47572345 Msa1106870:intron 55.0%
! CTCTGTTGAGGTGCCACGTT+AGG - chr7_3:47572903-47572922 None:intergenic 55.0%
GCCTCATCCTCACTCTGTTG+AGG - chr7_3:47572915-47572934 None:intergenic 55.0%
GGTGACTGCTTTCCCTGATG+AGG + chr7_3:47573025-47573044 Msa1106870:CDS 55.0%
CAGGTCCCTCATATACCAGC+TGG - chr7_3:47573097-47573116 None:intergenic 55.0%
ATGTACACCGCTCTCCGTCG+CGG + chr7_3:47570546-47570565 Msa1106870:CDS 60.0%
TGGAGGAAGTTGCCGCTGCA+CGG - chr7_3:47570602-47570621 None:intergenic 60.0%
! TGCGCTGTGGAAGGTTCTGG+AGG - chr7_3:47570619-47570638 None:intergenic 60.0%
AACGGCGATTGCGCTGTGGA+AGG - chr7_3:47570628-47570647 None:intergenic 60.0%
GGTTAACGGCGATTGCGCTG+TGG - chr7_3:47570632-47570651 None:intergenic 60.0%
GCCGTAAGCGAAGCTACGAG+AGG - chr7_3:47570688-47570707 None:intergenic 60.0%
TGGCTCCGTGCTTTCGGCAA+AGG - chr7_3:47572281-47572300 None:intergenic 60.0%
CGTGGCACCTCAACAGAGTG+AGG + chr7_3:47572905-47572924 Msa1106870:CDS 60.0%
! AGAGAGGAGAGGGAGTGCGG+CGG - chr7_3:47570577-47570596 None:intergenic 65.0%
GCGAGAGAGGAGAGGGAGTG+CGG - chr7_3:47570580-47570599 None:intergenic 65.0%
CTGCACGGCGAGAGAGGAGA+GGG - chr7_3:47570587-47570606 None:intergenic 65.0%
TCTCCTCTCTCGCCGTGCAG+CGG + chr7_3:47570587-47570606 Msa1106870:CDS 65.0%
GCTGCACGGCGAGAGAGGAG+AGG - chr7_3:47570588-47570607 None:intergenic 70.0%
TTGCCGCTGCACGGCGAGAG+AGG - chr7_3:47570593-47570612 None:intergenic 70.0%
! GAGGAGAGGGAGTGCGGCGG+CGG - chr7_3:47570574-47570593 None:intergenic 75.0%
! GGCGGCGCCGCGACGGAGAG+CGG - chr7_3:47570556-47570575 None:intergenic 85.0%
! GTGCGGCGGCGGCGCCGCGA+CGG - chr7_3:47570563-47570582 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 47570472 47573646 47570472 ID=Msa1106870;Name=Msa1106870
chr7_3 mRNA 47570472 47573646 47570472 ID=Msa1106870-mRNA-1;Parent=Msa1106870;Name=Msa1106870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=68|1|1|1|1|1|3|278|253
chr7_3 exon 47570472 47570806 47570472 ID=Msa1106870-mRNA-1:exon:9687;Parent=Msa1106870-mRNA-1
chr7_3 exon 47572789 47573123 47572789 ID=Msa1106870-mRNA-1:exon:9688;Parent=Msa1106870-mRNA-1
chr7_3 exon 47573209 47573646 47573209 ID=Msa1106870-mRNA-1:exon:9689;Parent=Msa1106870-mRNA-1
chr7_3 five_prime_UTR 47570472 47570539 47570472 ID=Msa1106870-mRNA-1:five_prime_utr;Parent=Msa1106870-mRNA-1
chr7_3 CDS 47570540 47570806 47570540 ID=Msa1106870-mRNA-1:cds;Parent=Msa1106870-mRNA-1
chr7_3 CDS 47572789 47573123 47572789 ID=Msa1106870-mRNA-1:cds;Parent=Msa1106870-mRNA-1
chr7_3 CDS 47573209 47573368 47573209 ID=Msa1106870-mRNA-1:cds;Parent=Msa1106870-mRNA-1
chr7_3 three_prime_UTR 47573369 47573646 47573369 ID=Msa1106870-mRNA-1:three_prime_utr;Parent=Msa1106870-mRNA-1
Gene Sequence

>Msa1106870

ATGGCTATGTACACCGCTCTCCGTCGCGGCGCCGCCGCCGCACTCCCTCTCCTCTCTCGCCGTGCAGCGGCAACTTCCTCCAGAACCTTCCACAGCGCAATCGCCGTTAACCTCCTTCGCCACAGTGAAACCACTCATTTTGTACCCTCTCGTAGCTTCGCTTACGGCGTTTTAGCGAAAACCCCCGCTGATGATACTCTTCTTCGAGTCCTTGACAGTGAAATCGACTGTGCTCTTGAGGATAATAATGAAGGCCTTTTAACAAACCTTGAATTTCCCGGTGATTTTCCTTTTGAGATCGAGGACAACCCTGGAGAAAGAACTATTCAACTGAAAAGACAATTTGAAGATGAAACTATCACAGTTCAAGTTGACATCCCTAACGTGGCACCTCAACAGAGTGAGGATGAGGCTGACCCCGAGAAGAATGAGAATGATAGCGAATCTAGCATTCCTTTAGTTGTGACTATTTTCAAAGGAAATGGAGTGTGTATGGAGTTTGGGGTGACTGCTTTCCCTGATGAGGTTGTGATTGATAGCTTGTCCATAAAGAATCCGGATGAATCTGAAGACCAGCTGGTATATGAGGGACCTGAGTTCACCGATTTGGATGAAAACCTGCAGAAGGCTTTTCTCAAGTATCTCGAGATCCGAGGGATAACACCCAACACAACCAACTTTTTACAGGAATACATGTTCAACAAAGACAACAAGGAATACTTGGGGTGGCTGAAGAAACTGAAGAGCTTCATTGAGAAATGA

Protein sequence

>Msa1106870

MAMYTALRRGAAAALPLLSRRAAATSSRTFHSAIAVNLLRHSETTHFVPSRSFAYGVLAKTPADDTLLRVLDSEIDCALEDNNEGLLTNLEFPGDFPFEIEDNPGERTIQLKRQFEDETITVQVDIPNVAPQQSEDEADPEKNENDSESSIPLVVTIFKGNGVCMEFGVTAFPDEVVIDSLSIKNPDESEDQLVYEGPEFTDLDENLQKAFLKYLEIRGITPNTTNFLQEYMFNKDNKEYLGWLKKLKSFIEK*