AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0503730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503730 MtrunA17_Chr3g0103231 92.373 472 27 1 1 472 1 463 0.0 890
Msa0503730 MtrunA17_Chr3g0103211 82.090 469 75 1 1 469 1 460 0.0 808
Msa0503730 MtrunA17_Chr3g0103221 78.033 478 89 3 1 471 1 469 0.0 770
Msa0503730 MtrunA17_Chr3g0103251 88.547 358 21 1 135 472 19 376 0.0 650
Msa0503730 MtrunA17_Chr5g0447221 68.973 448 128 3 23 469 29 466 0.0 644
Msa0503730 MtrunA17_Chr3g0125091 51.082 462 216 2 6 466 17 469 1.15e-177 506
Msa0503730 MtrunA17_Chr3g0103271 51.812 469 213 3 2 469 9 465 2.82e-177 505
Msa0503730 MtrunA17_Chr8g0384661 51.101 454 208 3 15 466 42 483 4.89e-177 505
Msa0503730 MtrunA17_Chr3g0125081 50.325 461 220 1 6 466 17 468 3.40e-176 503
Msa0503730 MtrunA17_Chr3g0125101 49.784 462 222 2 6 466 17 469 7.51e-173 494
Msa0503730 MtrunA17_Chr4g0037201 48.701 462 220 2 13 466 49 501 6.61e-171 490
Msa0503730 MtrunA17_Chr1g0159761 51.910 445 202 3 10 451 14 449 5.28e-170 487
Msa0503730 MtrunA17_Chr3g0140761 48.093 472 228 3 4 466 8 471 4.91e-168 482
Msa0503730 MtrunA17_Chr5g0447231 51.678 447 206 2 23 468 25 462 2.29e-163 469
Msa0503730 MtrunA17_Chr1g0146491 47.228 451 227 2 16 463 16 458 2.21e-162 467
Msa0503730 MtrunA17_Chr3g0130641 47.903 453 222 3 16 466 26 466 2.35e-157 454
Msa0503730 MtrunA17_Chr3g0130651 50.115 435 201 4 11 443 14 434 2.36e-152 441
Msa0503730 MtrunA17_Chr1g0206871 46.341 451 226 3 23 464 15 458 1.38e-151 439
Msa0503730 MtrunA17_Chr3g0140531 42.612 467 260 4 1 466 1 460 7.10e-138 405
Msa0503730 MtrunA17_Chr1g0146411 41.480 446 247 3 17 462 27 458 6.84e-129 382
Msa0503730 MtrunA17_Chr3g0140541 42.418 455 253 3 9 463 11 456 1.17e-128 381
Msa0503730 MtrunA17_Chr2g0293331 42.070 454 248 5 16 466 5 446 4.44e-127 377
Msa0503730 MtrunA17_Chr1g0146331 40.667 450 253 5 17 463 14 452 4.88e-125 372
Msa0503730 MtrunA17_Chr1g0146391 39.062 448 264 4 17 464 6 444 4.27e-121 361
Msa0503730 MtrunA17_Chr1g0206851 46.176 353 177 3 115 466 30 370 3.28e-113 338
Msa0503730 MtrunA17_Chr1g0206831 48.071 337 154 4 135 466 13 333 2.66e-110 330
Msa0503730 MtrunA17_Chr3g0103261 97.778 135 3 0 1 135 1 135 4.51e-90 271
Msa0503730 MtrunA17_Chr5g0402151 46.026 302 123 4 26 327 3 264 4.98e-89 273
Msa0503730 MtrunA17_Chr1g0206821 54.028 211 97 0 256 466 310 520 4.21e-78 253
Msa0503730 MtrunA17_Chr1g0206821 44.487 263 128 4 7 260 1 254 1.00e-68 228
Msa0503730 MtrunA17_Chr3g0130671 47.699 239 112 3 1 237 19 246 2.23e-66 214
Msa0503730 MtrunA17_Chr3g0130661 48.824 170 82 2 295 463 2 167 9.89e-54 178
Msa0503730 MtrunA17_Chr6g0458931 27.869 427 260 12 22 441 41 426 1.01e-41 154
Msa0503730 MtrunA17_Chr4g0057851 27.907 430 253 11 22 438 2 387 4.94e-41 152
Msa0503730 MtrunA17_Chr8g0376991 27.137 468 295 9 4 466 2 428 1.25e-40 150
Msa0503730 MtrunA17_Chr2g0331721 27.189 434 271 10 10 438 32 425 1.32e-39 148
Msa0503730 MtrunA17_Chr7g0230011 29.363 361 214 9 10 353 3 339 6.77e-36 138
Msa0503730 MtrunA17_Chr5g0422741 28.009 457 280 13 18 469 22 434 4.34e-34 133
Msa0503730 MtrunA17_Chr3g0122921 26.059 472 279 15 8 471 16 425 1.33e-32 128
Msa0503730 MtrunA17_Chr1g0206841 56.190 105 44 1 1 105 1 103 3.68e-32 118
Msa0503730 MtrunA17_Chr1g0198531 26.078 464 292 11 10 467 12 430 2.84e-31 125
Msa0503730 MtrunA17_Chr1g0206861 60.215 93 37 0 16 108 14 106 6.02e-31 117
Msa0503730 MtrunA17_Chr6g0459021 27.689 437 270 11 34 466 45 439 1.01e-30 123
Msa0503730 MtrunA17_Chr6g0459011 26.328 433 271 9 39 466 1 390 1.33e-30 122
Msa0503730 MtrunA17_Chr3g0077651 27.647 340 215 7 22 354 51 366 2.02e-29 120
Msa0503730 MtrunA17_Chr6g0458921 26.420 405 244 12 1 401 1 355 2.77e-29 119
Msa0503730 MtrunA17_Chr6g0459031 26.914 405 242 12 1 401 1 355 4.50e-29 118
Msa0503730 MtrunA17_Chr1g0184721 23.965 459 302 15 14 466 13 430 4.69e-29 119
Msa0503730 MtrunA17_Chr1g0198541 26.340 429 264 12 19 440 20 403 1.21e-26 111
Msa0503730 MtrunA17_Chr2g0328081 26.667 390 237 9 18 401 9 355 3.07e-26 110
Msa0503730 MtrunA17_Chr6g0459001 25.105 478 307 8 21 471 20 473 7.28e-26 110
Msa0503730 MtrunA17_Chr4g0027241 26.559 433 261 15 4 422 19 408 3.94e-24 104
Msa0503730 MtrunA17_Chr1g0198081 24.627 402 262 11 34 430 70 435 9.63e-24 103
Msa0503730 MtrunA17_Chr4g0038711 25.298 419 268 11 24 430 71 456 1.40e-23 103
Msa0503730 MtrunA17_Chr1g0146351 48.980 98 49 1 34 131 14 110 2.98e-22 91.7
Msa0503730 MtrunA17_Chr8g0387941 24.946 465 287 18 17 465 18 436 2.02e-19 90.5
Msa0503730 MtrunA17_Chr3g0143701 22.637 455 302 14 22 464 83 499 6.57e-19 89.4
Msa0503730 MtrunA17_Chr2g0281341 24.090 357 236 9 23 363 95 432 1.65e-14 75.9
Msa0503730 MtrunA17_Chr1g0159751 57.692 52 22 0 273 324 1 52 5.87e-14 67.0
Msa0503730 MtrunA17_Chr5g0436281 23.529 408 251 12 54 451 4 360 4.44e-13 70.9
Msa0503730 MtrunA17_Chr4g0058161 24.762 420 259 16 54 466 71 440 4.75e-12 67.8
Msa0503730 MtrunA17_Chr5g0406351 22.145 429 282 14 23 438 107 496 5.19e-11 64.7
Msa0503730 MtrunA17_Chr5g0406331 22.145 429 279 13 24 438 87 474 7.00e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503730 AT5G23810.1 57.930 454 177 4 19 467 21 465 6.88e-177 504
Msa0503730 AT1G77380.1 52.477 444 200 2 10 451 16 450 1.84e-175 501
Msa0503730 AT5G09220.1 49.780 454 216 3 16 466 38 482 3.75e-173 496
Msa0503730 AT1G44100.1 50.968 465 207 4 12 466 16 469 5.08e-171 490
Msa0503730 AT5G63850.1 50.000 454 215 3 16 466 11 455 1.20e-170 488
Msa0503730 AT1G10010.1 48.000 475 237 3 1 471 1 469 1.68e-168 483
Msa0503730 AT1G10010.2 48.000 475 237 3 1 471 2 470 1.80e-168 483
Msa0503730 AT1G58360.1 46.652 463 241 2 2 464 15 471 2.22e-165 476
Msa0503730 AT5G49630.1 46.436 463 236 3 8 466 17 471 3.25e-159 460
Msa0503730 AT5G23810.2 59.327 327 121 3 19 342 21 338 6.09e-126 370
Msa0503730 AT5G23810.4 54.694 245 99 3 19 260 21 256 1.29e-83 259
Msa0503730 AT5G23810.5 55.155 194 84 2 19 209 21 214 3.17e-65 210
Msa0503730 AT5G23810.3 55.155 194 84 2 19 209 21 214 3.17e-65 210
Msa0503730 AT1G61270.1 26.164 451 283 9 22 465 32 439 4.38e-40 150
Msa0503730 AT5G40780.1 25.386 453 287 11 22 467 32 440 1.82e-36 140
Msa0503730 AT3G01760.1 24.717 441 286 10 22 455 30 431 1.29e-35 137
Msa0503730 AT1G24400.1 27.191 445 258 13 34 464 39 431 5.02e-35 135
Msa0503730 AT5G40780.3 25.459 436 274 11 39 467 1 392 1.71e-34 133
Msa0503730 AT5G40780.2 25.459 436 274 11 39 467 1 392 1.71e-34 133
Msa0503730 AT1G48640.1 24.889 450 290 9 22 468 39 443 2.05e-32 129
Msa0503730 AT1G67640.1 27.191 445 271 11 34 472 39 436 2.34e-32 128
Msa0503730 AT1G25530.1 25.862 464 298 10 8 467 12 433 1.09e-29 120
Msa0503730 AT1G71680.2 28.487 337 209 8 22 352 33 343 1.24e-26 110
Msa0503730 AT1G71680.1 28.487 337 209 8 22 352 33 343 6.67e-26 110
Msa0503730 AT1G08230.2 27.295 403 236 15 34 422 38 397 3.53e-17 84.3
Msa0503730 AT5G41800.1 23.305 472 287 18 17 465 16 435 2.42e-16 81.6
Msa0503730 AT3G55740.1 25.330 379 230 14 54 427 60 390 7.64e-15 77.0
Msa0503730 AT3G55740.2 24.870 386 223 13 54 427 4 334 8.99e-15 76.3
Msa0503730 AT3G55740.3 24.870 386 223 13 54 427 4 334 8.99e-15 76.3
Msa0503730 AT2G39890.2 23.775 408 250 17 54 451 63 419 2.21e-14 75.5
Msa0503730 AT2G39890.1 23.775 408 250 17 54 451 63 419 2.21e-14 75.5
Msa0503730 AT2G39890.3 23.659 410 248 17 54 451 4 360 2.92e-14 74.7
Msa0503730 AT2G36590.1 23.885 381 239 11 54 430 57 390 3.06e-14 75.1
Msa0503730 AT1G47670.1 23.249 357 239 10 23 363 93 430 5.54e-12 68.2
Msa0503730 AT4G35180.1 24.122 427 273 12 23 439 57 442 4.47e-11 65.5

Find 122 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATAATGCTTACTTTATT+TGG 0.040040 3_4:+47276921 Msa0503730:three_prime_UTR
CCTTACTTCAACTCAGTTCT+AGG 0.156826 3_4:+47276681 Msa0503730:CDS
GATAGGGATTAAGATATTTA+AGG 0.177898 3_4:+47276995 Msa0503730:three_prime_UTR
TGCAGAAAATGGAAGAATTA+TGG 0.179312 3_4:+47275303 Msa0503730:CDS
TATTAGGAGCTATAAATTTC+TGG 0.200136 3_4:+47276706 Msa0503730:CDS
TCAACTTGTATATTATTAAA+TGG 0.211424 3_4:-47277036 None:intergenic
TAATAATGCTTACTTTATTT+GGG 0.219006 3_4:+47276922 Msa0503730:three_prime_UTR
TTGAATTTGAATCATATTCT+TGG 0.237090 3_4:+47273856 Msa0503730:five_prime_UTR
AACTCAGTTCTAGGATTATT+AGG 0.246030 3_4:+47276690 Msa0503730:CDS
TTGGAGCTTGGACTAGAAAA+TGG 0.253711 3_4:+47276778 Msa0503730:CDS
TGCTTTGGATATGCAGCTTT+TGG 0.255768 3_4:+47275631 Msa0503730:CDS
CATATCATCACAGCAGTTAT+TGG 0.260349 3_4:+47274077 Msa0503730:CDS
TATGAGGTAATTATTATATA+AGG 0.261161 3_4:-47273692 None:intergenic
AGAAATCCTGATTCGGTAAC+TGG 0.263130 3_4:+47274221 Msa0503730:CDS
AAATAAAGTAAGCATTATTA+AGG 0.273350 3_4:-47276919 None:intergenic
CCATAACATGGCTTGGGTTT+CGG 0.279944 3_4:+47275088 Msa0503730:CDS
CACCAAGCTCCTTGTAATTA+TGG 0.294590 3_4:+47275002 Msa0503730:CDS
GGAAATCTCTTGACAGGGTT+TGG 0.296932 3_4:+47275667 Msa0503730:CDS
TTCTGTAACAATCAGATAAA+AGG 0.300294 3_4:-47274202 None:intergenic
TCATTTGGTCGGCGGCTATC+AGG 0.304160 3_4:+47275741 Msa0503730:CDS
TACCTATGCTGTGGCTGCTT+TGG 0.304448 3_4:+47275616 Msa0503730:CDS
AATCGCGTTATTGCAGAAAA+TGG 0.313689 3_4:+47275292 Msa0503730:CDS
CTAGAAAATGGATTGTTCTA+AGG 0.318873 3_4:+47276790 Msa0503730:CDS
GTCACAATGGTTGGATTTGT+TGG 0.330720 3_4:+47276837 Msa0503730:CDS
TCAAGAAGGATAATTGAATA+TGG 0.335571 3_4:-47275412 None:intergenic
CTTCAAATTACAAAAGCTTC+TGG 0.337199 3_4:+47273903 Msa0503730:CDS
CAAAATCTGGTTAATCTTCC+AGG 0.338409 3_4:+47275363 Msa0503730:CDS
GCAGAAAATGGAAGAATTAT+GGG 0.345376 3_4:+47275304 Msa0503730:CDS
CCAATGTAAATAAGCCAATA+AGG 0.352895 3_4:-47275700 None:intergenic
AACCCTGTCAAGAGATTTCC+TGG 0.353548 3_4:-47275664 None:intergenic
ATAGCATATAGTAATTATAT+TGG 0.358357 3_4:-47273767 None:intergenic
TGCTTTCTTGTCACAATGGT+TGG 0.359600 3_4:+47276828 Msa0503730:CDS
CTAAAGTTCCTAACAAAATC+TGG 0.359899 3_4:+47275350 Msa0503730:CDS
AGAATTATGGGAAGTATAAC+AGG 0.360907 3_4:+47275316 Msa0503730:CDS
AATTATCCTTCTTGAGATAC+AGG 0.364268 3_4:+47275420 Msa0503730:CDS
ATAGGGATTAAGATATTTAA+GGG 0.366816 3_4:+47276996 Msa0503730:three_prime_UTR
TGTTTGTATTATCATTCATT+TGG 0.389709 3_4:+47275726 Msa0503730:CDS
AGAGAGAAAATTAGTGGAAA+AGG 0.394800 3_4:+47276879 Msa0503730:CDS
ATAGAGGAAGTTTCACTTTG+TGG 0.396172 3_4:-47276575 None:intergenic
CTATCAGCAGTGCTATATAT+TGG 0.398528 3_4:-47276507 None:intergenic
TGTACAAAGTACATTTCTAC+TGG 0.402848 3_4:-47276747 None:intergenic
CCGAAACCCAAGCCATGTTA+TGG 0.410102 3_4:-47275088 None:intergenic
ATCTCAAAAGCTGGTAATAG+AGG 0.416607 3_4:-47276591 None:intergenic
TACAGAAGAAAGTTGGAGCT+TGG 0.429896 3_4:+47276766 Msa0503730:CDS
ATCACAGCAGTTATTGGTTC+CGG 0.434147 3_4:+47274083 Msa0503730:CDS
GCACAACAAAGCAAGGTAAC+TGG 0.434792 3_4:-47274155 None:intergenic
AACTTGTATATGATGCTGTT+TGG 0.437628 3_4:+47275029 Msa0503730:CDS
AGCTATAAATTTCTGGCCAT+TGG 0.438131 3_4:+47276713 Msa0503730:CDS
GGATTTGTTGGATCATTTGA+AGG 0.441279 3_4:+47276849 Msa0503730:CDS
ATCATAAGAGAGAAAATTAG+TGG 0.441440 3_4:+47276873 Msa0503730:CDS
ATTGTTTGATTCTCTGGTGG+AGG 0.441973 3_4:-47275550 None:intergenic
TATATAGCACTGCTGATAGA+TGG 0.445501 3_4:+47276511 Msa0503730:CDS
AGAATATGATTCAAATTCAA+TGG 0.447370 3_4:-47273853 None:intergenic
TCAACCACAAAGCCACTGTT+GGG 0.449153 3_4:-47276549 None:intergenic
ATAGGAGAATTACTTCAAAC+TGG 0.449963 3_4:-47274476 None:intergenic
ATACCCCAACAGTGGCTTTG+TGG 0.453124 3_4:+47276545 Msa0503730:CDS
ACACCAGGAAATCTCTTGAC+AGG 0.456267 3_4:+47275661 Msa0503730:CDS
CCTAGAACTGAGTTGAAGTA+AGG 0.457809 3_4:-47276681 None:intergenic
CTTTATTTGGGGTTGTACAT+TGG 0.462786 3_4:+47276934 Msa0503730:three_prime_UTR
CGGATCTCCATAACATGGCT+TGG 0.466830 3_4:+47275081 Msa0503730:CDS
ATGATGATGGACATGCAAAA+AGG 0.466879 3_4:+47273934 Msa0503730:CDS
AGGCAACATCACCAAGTGCC+TGG 0.470572 3_4:-47275381 None:intergenic
GATGCTGTTAGAGTTAATCT+TGG 0.473459 3_4:+47274266 Msa0503730:CDS
TGTATTATCATTCATTTGGT+CGG 0.476158 3_4:+47275730 Msa0503730:CDS
GGATCTCCATAACATGGCTT+GGG 0.481533 3_4:+47275082 Msa0503730:CDS
TGCTTGCTTTCTTGTCACAA+TGG 0.485278 3_4:+47276824 Msa0503730:CDS
TACTTTGTACAGAAGAAAGT+TGG 0.497035 3_4:+47276759 Msa0503730:CDS
ACTGCTCAACTAGGATGGAT+TGG 0.498130 3_4:+47274128 Msa0503730:CDS
TTACTTCAAACTGGTGGCTG+TGG 0.499027 3_4:-47274467 None:intergenic
TTCATTGTTTGATTCTCTGG+TGG 0.499978 3_4:-47275553 None:intergenic
TATAGTAATTATATTGGCAT+GGG 0.501139 3_4:-47273761 None:intergenic
TGGTTAATCTTCCAGGCACT+TGG 0.501530 3_4:+47275370 Msa0503730:CDS
CTGATTCGGTAACTGGGAAA+AGG 0.501707 3_4:+47274228 Msa0503730:CDS
CCTTATTGGCTTATTTACAT+TGG 0.502022 3_4:+47275700 Msa0503730:CDS
CACCATAATTACAAGGAGCT+TGG 0.503623 3_4:-47275004 None:intergenic
TCAAATTGCTATCATAAAGA+AGG 0.504054 3_4:+47274978 Msa0503730:CDS
AATTGAATATGGATAGGAAA+AGG 0.504294 3_4:-47275401 None:intergenic
GGATTAAGATATTTAAGGGA+TGG 0.513676 3_4:+47277000 Msa0503730:three_prime_UTR
GATTGTAATGTCGTTCATAC+CGG 0.514727 3_4:+47275061 Msa0503730:CDS
CAAGCCATGTTATGGAGATC+CGG 0.515900 3_4:-47275080 None:intergenic
TAAAATAAGAACATCTGCAT+TGG 0.516785 3_4:+47273801 Msa0503730:five_prime_UTR
TTGTTACAGAAATCCTGATT+CGG 0.518368 3_4:+47274214 Msa0503730:CDS
ATCAACCACAAAGCCACTGT+TGG 0.518974 3_4:-47276550 None:intergenic
CTGCATGATCTGTGATTATG+AGG 0.527869 3_4:-47273708 None:intergenic
AAAAGATTTATCTCAAAAGC+TGG 0.538707 3_4:-47276600 None:intergenic
CATAAGAGAATATATGTGGC+TGG 0.539043 3_4:+47274394 Msa0503730:CDS
GAAATCCTGATTCGGTAACT+GGG 0.541547 3_4:+47274222 Msa0503730:CDS
AAGGATAATTGAATATGGAT+AGG 0.542619 3_4:-47275407 None:intergenic
TCATTTACATACTCGTTCAT+CGG 0.550099 3_4:+47275128 Msa0503730:CDS
TCTGGTGCTTATGATGATGA+TGG 0.551479 3_4:+47273921 Msa0503730:CDS
AATAATGCTTACTTTATTTG+GGG 0.553190 3_4:+47276923 Msa0503730:three_prime_UTR
GAAAAGGAACTACTCTTACA+TGG 0.555365 3_4:+47274244 Msa0503730:CDS
GGAGTACTGCTCAACTAGGA+TGG 0.557246 3_4:+47274123 Msa0503730:CDS
AGCTATGTGATTTCAACCAC+TGG 0.557700 3_4:+47276642 Msa0503730:CDS
ACATACTCGTTCATCGGACT+AGG 0.557789 3_4:+47275134 Msa0503730:CDS
TCGTTCATCGGACTAGGACT+TGG 0.565860 3_4:+47275140 Msa0503730:CDS
ATATAGTAATTATATTGGCA+TGG 0.572477 3_4:-47273762 None:intergenic
AACTATTGCACAACAAAGCA+AGG 0.575679 3_4:-47274162 None:intergenic
CACCAGGAAATCTCTTGACA+GGG 0.578235 3_4:+47275662 Msa0503730:CDS
TTAATGTAATGTAATAGTAG+TGG 0.583560 3_4:+47276957 Msa0503730:three_prime_UTR
AAGGTACCTGTATCTCAAGA+AGG 0.587507 3_4:-47275426 None:intergenic
GCTCAACTAGGATGGATTGG+AGG 0.592122 3_4:+47274131 Msa0503730:CDS
GCATGGAGTACTGCTCAACT+AGG 0.605078 3_4:+47274119 Msa0503730:CDS
ACTGGGAAATATATAGCCAA+TGG 0.606675 3_4:-47276729 None:intergenic
AGGTCATAAGAGAATATATG+TGG 0.613300 3_4:+47274390 Msa0503730:intron
ATTATCATTCATTTGGTCGG+CGG 0.615061 3_4:+47275733 Msa0503730:CDS
GGCAACACTAGTCCCATACA+AGG 0.621147 3_4:-47274434 None:intergenic
ATAGTAATTATATTGGCATG+GGG 0.621448 3_4:-47273760 None:intergenic
AAGTTACCACCATAATTACA+AGG 0.636485 3_4:-47275011 None:intergenic
CATACCGGATCTCCATAACA+TGG 0.636804 3_4:+47275076 Msa0503730:CDS
GTACAAAGTACATTTCTACT+GGG 0.641752 3_4:-47276746 None:intergenic
ACATTCTTCTACCTATGCTG+TGG 0.646044 3_4:+47275607 Msa0503730:CDS
GGAGAATTACTTCAAACTGG+TGG 0.648453 3_4:-47274473 None:intergenic
TGTAATGAAGATTGCAACCA+TGG 0.649304 3_4:-47275584 None:intergenic
CAACCACAAAGCCACTGTTG+GGG 0.657802 3_4:-47276548 None:intergenic
CAAGCTCCTTGTAATTATGG+TGG 0.659202 3_4:+47275005 Msa0503730:CDS
AGGAAATTTAAAGAGTGCTG+TGG 0.662726 3_4:+47274052 Msa0503730:intron
CCATGCCAATGACAAAACAC+CGG 0.666606 3_4:-47274102 None:intergenic
AAATAGAATTGCTAGTCCAG+TGG 0.666901 3_4:-47276658 None:intergenic
ATCCAAAGCAGCCACAGCAT+AGG 0.684779 3_4:-47275618 None:intergenic
GGTGGCTGTGGTAAGTACAC+AGG 0.685509 3_4:-47274455 None:intergenic
TAGTAATTATATTGGCATGG+GGG 0.710364 3_4:-47273759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCAAATTACAAATTTAT+TGG - chr3_4:47277084-47277103 None:intergenic 10.0%
!! TATGAGGTAATTATTATATA+AGG - chr3_4:47273695-47273714 None:intergenic 15.0%
!! ATAGCATATAGTAATTATAT+TGG - chr3_4:47273770-47273789 None:intergenic 15.0%
!! ATAATTGTGTATTATTAGAT+TGG - chr3_4:47274928-47274947 None:intergenic 15.0%
!! ATTAGAATATGAAATGTTTA+AGG - chr3_4:47275448-47275467 None:intergenic 15.0%
!! TTAAGTTATGATAAATCAAA+AGG - chr3_4:47275823-47275842 None:intergenic 15.0%
!!! TTTTGATTTATCATAACTTA+AGG + chr3_4:47275822-47275841 Msa0503730:intron 15.0%
!! AAATAAAGTAAGCATTATTA+AGG - chr3_4:47276922-47276941 None:intergenic 15.0%
!! TTAATAATGCTTACTTTATT+TGG + chr3_4:47276921-47276940 Msa0503730:three_prime_UTR 15.0%
!!! TAATAATGCTTACTTTATTT+GGG + chr3_4:47276922-47276941 Msa0503730:three_prime_UTR 15.0%
!! TCAACTTGTATATTATTAAA+TGG - chr3_4:47277039-47277058 None:intergenic 15.0%
!! AATTTGTAATTTGATATTGA+TGG + chr3_4:47277087-47277106 Msa0503730:intron 15.0%
!! TATAGTAATTATATTGGCAT+GGG - chr3_4:47273764-47273783 None:intergenic 20.0%
!! ATATAGTAATTATATTGGCA+TGG - chr3_4:47273765-47273784 None:intergenic 20.0%
!! AGAATATGATTCAAATTCAA+TGG - chr3_4:47273856-47273875 None:intergenic 20.0%
!! TTGAATTTGAATCATATTCT+TGG + chr3_4:47273856-47273875 Msa0503730:five_prime_UTR 20.0%
!! ATCATATTCTTGGATAAAAA+TGG + chr3_4:47273866-47273885 Msa0503730:exon 20.0%
!! TGTATATGAGAAAAATGAAT+TGG - chr3_4:47274003-47274022 None:intergenic 20.0%
!!! ATTCATTTTTCTCATATACA+TGG + chr3_4:47274003-47274022 Msa0503730:intron 20.0%
!!! CTTTCAAGTTATAACTATTA+TGG - chr3_4:47274362-47274381 None:intergenic 20.0%
!! TAATAGTTATAACTTGAAAG+TGG + chr3_4:47274362-47274381 Msa0503730:intron 20.0%
!! TATTAGCACTAATTATACTT+TGG + chr3_4:47274608-47274627 Msa0503730:intron 20.0%
!! ATTATTGTACTAATGAATAC+AGG + chr3_4:47274943-47274962 Msa0503730:intron 20.0%
!! TTATTGTACTAATGAATACA+GGG + chr3_4:47274944-47274963 Msa0503730:intron 20.0%
!! TGTTTGTATTATCATTCATT+TGG + chr3_4:47275726-47275745 Msa0503730:CDS 20.0%
!!! AATTACTAGTGAATTTTGAT+TGG - chr3_4:47275778-47275797 None:intergenic 20.0%
!! ATTATTGTTTCACATCTATA+TGG + chr3_4:47276457-47276476 Msa0503730:intron 20.0%
!!! AATAATGCTTACTTTATTTG+GGG + chr3_4:47276923-47276942 Msa0503730:three_prime_UTR 20.0%
!! TTAATGTAATGTAATAGTAG+TGG + chr3_4:47276957-47276976 Msa0503730:three_prime_UTR 20.0%
!! ATAGGGATTAAGATATTTAA+GGG + chr3_4:47276996-47277015 Msa0503730:three_prime_UTR 20.0%
! ATAGTAATTATATTGGCATG+GGG - chr3_4:47273763-47273782 None:intergenic 25.0%
! TAAAATAAGAACATCTGCAT+TGG + chr3_4:47273801-47273820 Msa0503730:five_prime_UTR 25.0%
! TATTCTTGGATAAAAATGGA+TGG + chr3_4:47273870-47273889 Msa0503730:exon 25.0%
! ATTCTTGGATAAAAATGGAT+GGG + chr3_4:47273871-47273890 Msa0503730:exon 25.0%
! TTCTGTAACAATCAGATAAA+AGG - chr3_4:47274205-47274224 None:intergenic 25.0%
!! TTCAATTTTTGACCTTGTAT+GGG + chr3_4:47274422-47274441 Msa0503730:CDS 25.0%
!! GACTTATTTCCTTTTCTTTT+AGG + chr3_4:47274521-47274540 Msa0503730:intron 25.0%
! AACTTAGTTAAGCTCTTAAT+TGG + chr3_4:47274560-47274579 Msa0503730:intron 25.0%
! ACTTAGTTAAGCTCTTAATT+GGG + chr3_4:47274561-47274580 Msa0503730:intron 25.0%
!! ATTGGGACTGATTTATTTAT+TGG + chr3_4:47274578-47274597 Msa0503730:intron 25.0%
!!! TTTTGTTTTACCAAGCAATA+AGG + chr3_4:47274642-47274661 Msa0503730:intron 25.0%
!!! TTTGTTTTACCAAGCAATAA+GGG + chr3_4:47274643-47274662 Msa0503730:intron 25.0%
! ATTGTGTATTATTAGATTGG+TGG - chr3_4:47274925-47274944 None:intergenic 25.0%
! TCAAATTGCTATCATAAAGA+AGG + chr3_4:47274978-47274997 Msa0503730:CDS 25.0%
!! AAGATTAACCAGATTTTGTT+AGG - chr3_4:47275361-47275380 None:intergenic 25.0%
! AATTGAATATGGATAGGAAA+AGG - chr3_4:47275404-47275423 None:intergenic 25.0%
! AAGGATAATTGAATATGGAT+AGG - chr3_4:47275410-47275429 None:intergenic 25.0%
! TCAAGAAGGATAATTGAATA+TGG - chr3_4:47275415-47275434 None:intergenic 25.0%
! TATTGAATTATGTTGAGAAC+AGG + chr3_4:47275513-47275532 Msa0503730:intron 25.0%
!! TTTTTCATTGTTTGATTCTC+TGG - chr3_4:47275559-47275578 None:intergenic 25.0%
!!! TTGGATTTTTTGAACCTTAT+TGG + chr3_4:47275686-47275705 Msa0503730:CDS 25.0%
! TGTATTATCATTCATTTGGT+CGG + chr3_4:47275730-47275749 Msa0503730:CDS 25.0%
!!! TAGTGAATTTTGATTGGTAA+GGG - chr3_4:47275772-47275791 None:intergenic 25.0%
!! ACTTCATTGAAACTTTTGAA+AGG + chr3_4:47275927-47275946 Msa0503730:intron 25.0%
!!! CTTCATTGAAACTTTTGAAA+GGG + chr3_4:47275928-47275947 Msa0503730:intron 25.0%
! TTATTATCCTTACTTAAGAC+TGG - chr3_4:47276323-47276342 None:intergenic 25.0%
! AAAAGATTTATCTCAAAAGC+TGG - chr3_4:47276603-47276622 None:intergenic 25.0%
! TATTAGGAGCTATAAATTTC+TGG + chr3_4:47276706-47276725 Msa0503730:CDS 25.0%
! ATCATAAGAGAGAAAATTAG+TGG + chr3_4:47276873-47276892 Msa0503730:CDS 25.0%
! GATAGGGATTAAGATATTTA+AGG + chr3_4:47276995-47277014 Msa0503730:three_prime_UTR 25.0%
TAGTAATTATATTGGCATGG+GGG - chr3_4:47273762-47273781 None:intergenic 30.0%
CTTCAAATTACAAAAGCTTC+TGG + chr3_4:47273903-47273922 Msa0503730:CDS 30.0%
!! ATATCGAATATTGTTTCTGC+AGG + chr3_4:47274032-47274051 Msa0503730:intron 30.0%
TTGTTACAGAAATCCTGATT+CGG + chr3_4:47274214-47274233 Msa0503730:CDS 30.0%
! ATAACTTGAAAGTGGTTTTC+AGG + chr3_4:47274370-47274389 Msa0503730:intron 30.0%
AGGTCATAAGAGAATATATG+TGG + chr3_4:47274390-47274409 Msa0503730:intron 30.0%
CATACAAGGTCAAAAATTGA+AGG - chr3_4:47274423-47274442 None:intergenic 30.0%
! CTTCAATTTTTGACCTTGTA+TGG + chr3_4:47274421-47274440 Msa0503730:CDS 30.0%
ATAGGAGAATTACTTCAAAC+TGG - chr3_4:47274479-47274498 None:intergenic 30.0%
!! ATATTCATGAAGCGTTGAAT+AGG - chr3_4:47274497-47274516 None:intergenic 30.0%
TATTCAACGCTTCATGAATA+TGG + chr3_4:47274496-47274515 Msa0503730:intron 30.0%
CAAATAGAGCCTAAAAGAAA+AGG - chr3_4:47274533-47274552 None:intergenic 30.0%
! CTTTTCTTTTAGGCTCTATT+TGG + chr3_4:47274531-47274550 Msa0503730:intron 30.0%
! AACAGCTTATAACTTGTATG+AGG - chr3_4:47274830-47274849 None:intergenic 30.0%
AAGTTACCACCATAATTACA+AGG - chr3_4:47275014-47275033 None:intergenic 30.0%
AACTTGTATATGATGCTGTT+TGG + chr3_4:47275029-47275048 Msa0503730:CDS 30.0%
TCATTTACATACTCGTTCAT+CGG + chr3_4:47275128-47275147 Msa0503730:CDS 30.0%
ATTGTTGCGACAATTATTGT+GGG - chr3_4:47275219-47275238 None:intergenic 30.0%
AATTGTTGCGACAATTATTG+TGG - chr3_4:47275220-47275239 None:intergenic 30.0%
AACTCAACGTCTATATTTCA+TGG - chr3_4:47275271-47275290 None:intergenic 30.0%
TGCAGAAAATGGAAGAATTA+TGG + chr3_4:47275303-47275322 Msa0503730:CDS 30.0%
GCAGAAAATGGAAGAATTAT+GGG + chr3_4:47275304-47275323 Msa0503730:CDS 30.0%
! AGAATTATGGGAAGTATAAC+AGG + chr3_4:47275316-47275335 Msa0503730:CDS 30.0%
CTAAAGTTCCTAACAAAATC+TGG + chr3_4:47275350-47275369 Msa0503730:CDS 30.0%
AATTATCCTTCTTGAGATAC+AGG + chr3_4:47275420-47275439 Msa0503730:CDS 30.0%
CCAATGTAAATAAGCCAATA+AGG - chr3_4:47275703-47275722 None:intergenic 30.0%
!! CCTTATTGGCTTATTTACAT+TGG + chr3_4:47275700-47275719 Msa0503730:CDS 30.0%
!!! CTAGTGAATTTTGATTGGTA+AGG - chr3_4:47275773-47275792 None:intergenic 30.0%
CAAAAGTTTCAATGAAGTGT+CGG - chr3_4:47275925-47275944 None:intergenic 30.0%
TATTGAACCAGTCTTAAGTA+AGG + chr3_4:47276313-47276332 Msa0503730:intron 30.0%
!! AACTCAGTTCTAGGATTATT+AGG + chr3_4:47276690-47276709 Msa0503730:CDS 30.0%
GTACAAAGTACATTTCTACT+GGG - chr3_4:47276749-47276768 None:intergenic 30.0%
TGTACAAAGTACATTTCTAC+TGG - chr3_4:47276750-47276769 None:intergenic 30.0%
TACTTTGTACAGAAGAAAGT+TGG + chr3_4:47276759-47276778 Msa0503730:CDS 30.0%
!! CTAGAAAATGGATTGTTCTA+AGG + chr3_4:47276790-47276809 Msa0503730:CDS 30.0%
AGAGAGAAAATTAGTGGAAA+AGG + chr3_4:47276879-47276898 Msa0503730:CDS 30.0%
! GTTTTCAGAGTTGTTAGATA+GGG + chr3_4:47276979-47276998 Msa0503730:three_prime_UTR 30.0%
GGATTAAGATATTTAAGGGA+TGG + chr3_4:47277000-47277019 Msa0503730:three_prime_UTR 30.0%
!! ATGATGATGGACATGCAAAA+AGG + chr3_4:47273934-47273953 Msa0503730:CDS 35.0%
!! AGGAAATTTAAAGAGTGCTG+TGG + chr3_4:47274052-47274071 Msa0503730:intron 35.0%
CATATCATCACAGCAGTTAT+TGG + chr3_4:47274077-47274096 Msa0503730:CDS 35.0%
AACTATTGCACAACAAAGCA+AGG - chr3_4:47274165-47274184 None:intergenic 35.0%
GAAAAGGAACTACTCTTACA+TGG + chr3_4:47274244-47274263 Msa0503730:CDS 35.0%
GATGCTGTTAGAGTTAATCT+TGG + chr3_4:47274266-47274285 Msa0503730:CDS 35.0%
CATAAGAGAATATATGTGGC+TGG + chr3_4:47274394-47274413 Msa0503730:CDS 35.0%
CTGCACTACTAATTTCATTC+AGG - chr3_4:47274697-47274716 None:intergenic 35.0%
CTGAATGAAATTAGTAGTGC+AGG + chr3_4:47274695-47274714 Msa0503730:intron 35.0%
AAGCTATGTACAAAGTTGAG+TGG - chr3_4:47274728-47274747 None:intergenic 35.0%
CCTATATGTTACATGCTTAG+AGG - chr3_4:47274753-47274772 None:intergenic 35.0%
CCTCTAAGCATGTAACATAT+AGG + chr3_4:47274750-47274769 Msa0503730:intron 35.0%
! CATTAGCTATCGTTAGCTTA+TGG + chr3_4:47274852-47274871 Msa0503730:intron 35.0%
GATTGTAATGTCGTTCATAC+CGG + chr3_4:47275061-47275080 Msa0503730:CDS 35.0%
AATCGCGTTATTGCAGAAAA+TGG + chr3_4:47275292-47275311 Msa0503730:CDS 35.0%
CAAAATCTGGTTAATCTTCC+AGG + chr3_4:47275363-47275382 Msa0503730:CDS 35.0%
TTCATTGTTTGATTCTCTGG+TGG - chr3_4:47275556-47275575 None:intergenic 35.0%
!! AACAATGAAAAAAGCGTCCA+TGG + chr3_4:47275567-47275586 Msa0503730:CDS 35.0%
TGTAATGAAGATTGCAACCA+TGG - chr3_4:47275587-47275606 None:intergenic 35.0%
ATTATCATTCATTTGGTCGG+CGG + chr3_4:47275733-47275752 Msa0503730:CDS 35.0%
AGCATTAGTGTAGTGTATGT+AGG + chr3_4:47276043-47276062 Msa0503730:intron 35.0%
! CAAATAAGAAAGCACAGCAT+AGG - chr3_4:47276209-47276228 None:intergenic 35.0%
GGTTCAATACTAGGTAACAT+GGG - chr3_4:47276302-47276321 None:intergenic 35.0%
TGGTTCAATACTAGGTAACA+TGG - chr3_4:47276303-47276322 None:intergenic 35.0%
! CTTAAGACTGGTTCAATACT+AGG - chr3_4:47276311-47276330 None:intergenic 35.0%
ACATGACAAAACAGTGAAAG+AGG - chr3_4:47276421-47276440 None:intergenic 35.0%
CTATCAGCAGTGCTATATAT+TGG - chr3_4:47276510-47276529 None:intergenic 35.0%
TATATAGCACTGCTGATAGA+TGG + chr3_4:47276511-47276530 Msa0503730:CDS 35.0%
TCAAAAAAATACCCCAACAG+TGG + chr3_4:47276537-47276556 Msa0503730:CDS 35.0%
ATAGAGGAAGTTTCACTTTG+TGG - chr3_4:47276578-47276597 None:intergenic 35.0%
ATCTCAAAAGCTGGTAATAG+AGG - chr3_4:47276594-47276613 None:intergenic 35.0%
AAATAGAATTGCTAGTCCAG+TGG - chr3_4:47276661-47276680 None:intergenic 35.0%
!! AGCTATAAATTTCTGGCCAT+TGG + chr3_4:47276713-47276732 Msa0503730:CDS 35.0%
ACTGGGAAATATATAGCCAA+TGG - chr3_4:47276732-47276751 None:intergenic 35.0%
!! GGATTTGTTGGATCATTTGA+AGG + chr3_4:47276849-47276868 Msa0503730:CDS 35.0%
! CTTTATTTGGGGTTGTACAT+TGG + chr3_4:47276934-47276953 Msa0503730:three_prime_UTR 35.0%
! GGTTTTCAGAGTTGTTAGAT+AGG + chr3_4:47276978-47276997 Msa0503730:three_prime_UTR 35.0%
CTGCATGATCTGTGATTATG+AGG - chr3_4:47273711-47273730 None:intergenic 40.0%
! TCTGGTGCTTATGATGATGA+TGG + chr3_4:47273921-47273940 Msa0503730:CDS 40.0%
!! ATCACAGCAGTTATTGGTTC+CGG + chr3_4:47274083-47274102 Msa0503730:CDS 40.0%
!! AGAAATCCTGATTCGGTAAC+TGG + chr3_4:47274221-47274240 Msa0503730:CDS 40.0%
!! GAAATCCTGATTCGGTAACT+GGG + chr3_4:47274222-47274241 Msa0503730:CDS 40.0%
GGAGAATTACTTCAAACTGG+TGG - chr3_4:47274476-47274495 None:intergenic 40.0%
AACTACATGCCCTTATTGCT+TGG - chr3_4:47274655-47274674 None:intergenic 40.0%
! AAGCAATAAGGGCATGTAGT+TGG + chr3_4:47274654-47274673 Msa0503730:intron 40.0%
CACCAAGCTCCTTGTAATTA+TGG + chr3_4:47275002-47275021 Msa0503730:CDS 40.0%
CACCATAATTACAAGGAGCT+TGG - chr3_4:47275007-47275026 None:intergenic 40.0%
CAAGCTCCTTGTAATTATGG+TGG + chr3_4:47275005-47275024 Msa0503730:CDS 40.0%
TTGCGACAATTATTGTGGGA+CGG - chr3_4:47275215-47275234 None:intergenic 40.0%
! AAGGTACCTGTATCTCAAGA+AGG - chr3_4:47275429-47275448 None:intergenic 40.0%
ATTGTTTGATTCTCTGGTGG+AGG - chr3_4:47275553-47275572 None:intergenic 40.0%
ACATTCTTCTACCTATGCTG+TGG + chr3_4:47275607-47275626 Msa0503730:CDS 40.0%
!! TGCTTTGGATATGCAGCTTT+TGG + chr3_4:47275631-47275650 Msa0503730:CDS 40.0%
TGACGTTGTCATATCAGTGT+TGG - chr3_4:47275964-47275983 None:intergenic 40.0%
AACAGCAGAAGAGACATAGT+TGG + chr3_4:47276128-47276147 Msa0503730:intron 40.0%
AGCTATGTGATTTCAACCAC+TGG + chr3_4:47276642-47276661 Msa0503730:CDS 40.0%
! CCTAGAACTGAGTTGAAGTA+AGG - chr3_4:47276684-47276703 None:intergenic 40.0%
CCTTACTTCAACTCAGTTCT+AGG + chr3_4:47276681-47276700 Msa0503730:CDS 40.0%
TACAGAAGAAAGTTGGAGCT+TGG + chr3_4:47276766-47276785 Msa0503730:CDS 40.0%
! TTGGAGCTTGGACTAGAAAA+TGG + chr3_4:47276778-47276797 Msa0503730:CDS 40.0%
TGCTTGCTTTCTTGTCACAA+TGG + chr3_4:47276824-47276843 Msa0503730:CDS 40.0%
TGCTTTCTTGTCACAATGGT+TGG + chr3_4:47276828-47276847 Msa0503730:CDS 40.0%
GTCACAATGGTTGGATTTGT+TGG + chr3_4:47276837-47276856 Msa0503730:CDS 40.0%
GATGGACATGCAAAAAGGAC+TGG + chr3_4:47273939-47273958 Msa0503730:CDS 45.0%
! TGGTTCCGGTGTTTTGTCAT+TGG + chr3_4:47274097-47274116 Msa0503730:CDS 45.0%
CCATGCCAATGACAAAACAC+CGG - chr3_4:47274105-47274124 None:intergenic 45.0%
ACTGCTCAACTAGGATGGAT+TGG + chr3_4:47274128-47274147 Msa0503730:CDS 45.0%
GCACAACAAAGCAAGGTAAC+TGG - chr3_4:47274158-47274177 None:intergenic 45.0%
! CTTTTCCCAGTTACCGAATC+AGG - chr3_4:47274230-47274249 None:intergenic 45.0%
!! CTGATTCGGTAACTGGGAAA+AGG + chr3_4:47274228-47274247 Msa0503730:CDS 45.0%
TTACTTCAAACTGGTGGCTG+TGG - chr3_4:47274470-47274489 None:intergenic 45.0%
CATACCGGATCTCCATAACA+TGG + chr3_4:47275076-47275095 Msa0503730:CDS 45.0%
CAAGCCATGTTATGGAGATC+CGG - chr3_4:47275083-47275102 None:intergenic 45.0%
GGATCTCCATAACATGGCTT+GGG + chr3_4:47275082-47275101 Msa0503730:CDS 45.0%
! CCATAACATGGCTTGGGTTT+CGG + chr3_4:47275088-47275107 Msa0503730:CDS 45.0%
ACATACTCGTTCATCGGACT+AGG + chr3_4:47275134-47275153 Msa0503730:CDS 45.0%
GACAATTATTGTGGGACGGA+TGG - chr3_4:47275211-47275230 None:intergenic 45.0%
TGGTTAATCTTCCAGGCACT+TGG + chr3_4:47275370-47275389 Msa0503730:CDS 45.0%
!! GCTTTTGGAGATTCTACACC+AGG + chr3_4:47275646-47275665 Msa0503730:CDS 45.0%
ACACCAGGAAATCTCTTGAC+AGG + chr3_4:47275661-47275680 Msa0503730:CDS 45.0%
CACCAGGAAATCTCTTGACA+GGG + chr3_4:47275662-47275681 Msa0503730:CDS 45.0%
AACCCTGTCAAGAGATTTCC+TGG - chr3_4:47275667-47275686 None:intergenic 45.0%
GGAAATCTCTTGACAGGGTT+TGG + chr3_4:47275667-47275686 Msa0503730:CDS 45.0%
TCAACCACAAAGCCACTGTT+GGG - chr3_4:47276552-47276571 None:intergenic 45.0%
ATCAACCACAAAGCCACTGT+TGG - chr3_4:47276553-47276572 None:intergenic 45.0%
! CCGGTGTTTTGTCATTGGCA+TGG + chr3_4:47274102-47274121 Msa0503730:CDS 50.0%
!! GCATGGAGTACTGCTCAACT+AGG + chr3_4:47274119-47274138 Msa0503730:CDS 50.0%
!! GGAGTACTGCTCAACTAGGA+TGG + chr3_4:47274123-47274142 Msa0503730:CDS 50.0%
!! GCTCAACTAGGATGGATTGG+AGG + chr3_4:47274131-47274150 Msa0503730:CDS 50.0%
GGCAACACTAGTCCCATACA+AGG - chr3_4:47274437-47274456 None:intergenic 50.0%
CGGATCTCCATAACATGGCT+TGG + chr3_4:47275081-47275100 Msa0503730:CDS 50.0%
CCGAAACCCAAGCCATGTTA+TGG - chr3_4:47275091-47275110 None:intergenic 50.0%
! TCGTTCATCGGACTAGGACT+TGG + chr3_4:47275140-47275159 Msa0503730:CDS 50.0%
TACCTATGCTGTGGCTGCTT+TGG + chr3_4:47275616-47275635 Msa0503730:CDS 50.0%
ATCCAAAGCAGCCACAGCAT+AGG - chr3_4:47275621-47275640 None:intergenic 50.0%
! ATACCCCAACAGTGGCTTTG+TGG + chr3_4:47276545-47276564 Msa0503730:CDS 50.0%
CAACCACAAAGCCACTGTTG+GGG - chr3_4:47276551-47276570 None:intergenic 50.0%
GGTGGCTGTGGTAAGTACAC+AGG - chr3_4:47274458-47274477 None:intergenic 55.0%
AGGCAACATCACCAAGTGCC+TGG - chr3_4:47275384-47275403 None:intergenic 55.0%
TCATTTGGTCGGCGGCTATC+AGG + chr3_4:47275741-47275760 Msa0503730:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 47273687 47277163 47273687 ID=Msa0503730;Name=Msa0503730
chr3_4 mRNA 47273687 47277163 47273687 ID=Msa0503730-mRNA-1;Parent=Msa0503730;Name=Msa0503730-mRNA-1;_AED=0.25;_eAED=0.25;_QI=198|0.85|0.87|1|0.85|0.75|8|234|472
chr3_4 exon 47273687 47273960 47273687 ID=Msa0503730-mRNA-1:exon:10145;Parent=Msa0503730-mRNA-1
chr3_4 exon 47274054 47274287 47274054 ID=Msa0503730-mRNA-1:exon:10146;Parent=Msa0503730-mRNA-1
chr3_4 exon 47274392 47274485 47274392 ID=Msa0503730-mRNA-1:exon:10147;Parent=Msa0503730-mRNA-1
chr3_4 exon 47274965 47275179 47274965 ID=Msa0503730-mRNA-1:exon:10148;Parent=Msa0503730-mRNA-1
chr3_4 exon 47275281 47275441 47275281 ID=Msa0503730-mRNA-1:exon:10149;Parent=Msa0503730-mRNA-1
chr3_4 exon 47275535 47275762 47275535 ID=Msa0503730-mRNA-1:exon:10150;Parent=Msa0503730-mRNA-1
chr3_4 exon 47276495 47277087 47276495 ID=Msa0503730-mRNA-1:exon:10151;Parent=Msa0503730-mRNA-1
chr3_4 exon 47277112 47277163 47277112 ID=Msa0503730-mRNA-1:exon:10152;Parent=Msa0503730-mRNA-1
chr3_4 five_prime_UTR 47273687 47273884 47273687 ID=Msa0503730-mRNA-1:five_prime_utr;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47273885 47273960 47273885 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47274054 47274287 47274054 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47274392 47274485 47274392 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47274965 47275179 47274965 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47275281 47275441 47275281 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47275535 47275762 47275535 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 CDS 47276495 47276905 47276495 ID=Msa0503730-mRNA-1:cds;Parent=Msa0503730-mRNA-1
chr3_4 three_prime_UTR 47276906 47277087 47276906 ID=Msa0503730-mRNA-1:three_prime_utr;Parent=Msa0503730-mRNA-1
chr3_4 three_prime_UTR 47277112 47277163 47277112 ID=Msa0503730-mRNA-1:three_prime_utr;Parent=Msa0503730-mRNA-1
Gene Sequence

>Msa0503730

ATGGATGGGAAAAACTCTCTTCAAATTACAAAAGCTTCTGGTGCTTATGATGATGATGGACATGCAAAAAGGACTGGAAATTTAAAGAGTGCTGTGGCTCATATCATCACAGCAGTTATTGGTTCCGGTGTTTTGTCATTGGCATGGAGTACTGCTCAACTAGGATGGATTGGAGGACCAGTTACCTTGCTTTGTTGTGCAATAGTTACTTATATTTCTTCGTTCCTTTTATCTGATTGTTACAGAAATCCTGATTCGGTAACTGGGAAAAGGAACTACTCTTACATGGATGCTGTTAGAGTTAATCTTGGTCATAAGAGAATATATGTGGCTGGTTTCCTTCAATTTTTGACCTTGTATGGGACTAGTGTTGCCTGTGTACTTACCACAGCCACCAGTTTGAAGGCTATTATGAGATCAAATTGCTATCATAAAGAAGGACACCAAGCTCCTTGTAATTATGGTGGTAACTTGTATATGATGCTGTTTGGACTTGTTCAGATTGTAATGTCGTTCATACCGGATCTCCATAACATGGCTTGGGTTTCGGTTGTTGCTGCACTAATGTCATTTACATACTCGTTCATCGGACTAGGACTTGGCATATCAACAGTCATAAACGTTGAGTTTAATCGCGTTATTGCAGAAAATGGAAGAATTATGGGAAGTATAACAGGAGTACAAACTGCTAAAGTTCCTAACAAAATCTGGTTAATCTTCCAGGCACTTGGTGATGTTGCCTTTTCCTATCCATATTCAATTATCCTTCTTGAGATACAGGACACACTAGAGTCTCCTCCACCAGAGAATCAAACAATGAAAAAAGCGTCCATGGTTGCAATCTTCATTACAACATTCTTCTACCTATGCTGTGGCTGCTTTGGATATGCAGCTTTTGGAGATTCTACACCAGGAAATCTCTTGACAGGGTTTGGATTTTTTGAACCTTATTGGCTTATTTACATTGGCAATGTTTGTATTATCATTCATTTGGTCGGCGGCTATCAGATATACAGTCAACCAATATATAGCACTGCTGATAGATGGTTCTCAAAAAAATACCCCAACAGTGGCTTTGTGGTTGATTTCCACAAAGTGAAACTTCCTCTATTACCAGCTTTTGAGATAAATCTTTTCAGATTCTGTTTTAGAACAAGCTATGTGATTTCAACCACTGGACTAGCAATTCTATTTCCTTACTTCAACTCAGTTCTAGGATTATTAGGAGCTATAAATTTCTGGCCATTGGCTATATATTTCCCAGTAGAAATGTACTTTGTACAGAAGAAAGTTGGAGCTTGGACTAGAAAATGGATTGTTCTAAGGATTTTTAGCTTTGCTTGCTTTCTTGTCACAATGGTTGGATTTGTTGGATCATTTGAAGGTATCATAAGAGAGAAAATTAGTGGAAAAGGTTAA
Protein sequence

>Msa0503730

MDGKNSLQITKASGAYDDDGHAKRTGNLKSAVAHIITAVIGSGVLSLAWSTAQLGWIGGPVTLLCCAIVTYISSFLLSDCYRNPDSVTGKRNYSYMDAVRVNLGHKRIYVAGFLQFLTLYGTSVACVLTTATSLKAIMRSNCYHKEGHQAPCNYGGNLYMMLFGLVQIVMSFIPDLHNMAWVSVVAALMSFTYSFIGLGLGISTVINVEFNRVIAENGRIMGSITGVQTAKVPNKIWLIFQALGDVAFSYPYSIILLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGDSTPGNLLTGFGFFEPYWLIYIGNVCIIIHLVGGYQIYSQPIYSTADRWFSKKYPNSGFVVDFHKVKLPLLPAFEINLFRFCFRTSYVISTTGLAILFPYFNSVLGLLGAINFWPLAIYFPVEMYFVQKKVGAWTRKWIVLRIFSFACFLVTMVGFVGSFEGIIREKISGKG*