Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411810 | XP_013460087.1 | 93.220 | 472 | 23 | 1 | 1 | 472 | 1 | 463 | 0.0 | 900 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411810 | sp|Q9FF99|AAP7_ARATH | 57.489 | 454 | 179 | 4 | 19 | 467 | 21 | 465 | 6.91e-175 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411810 | A0A072UYC4 | 93.220 | 472 | 23 | 1 | 1 | 472 | 1 | 463 | 0.0 | 900 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0411810 | Msa0503730 | 0.870722 | 1.176799e-66 | -8.615850e-47 |
| Msa0411810 | Msa0512900 | 0.804705 | 1.900592e-49 | -8.615850e-47 |
| Msa0411810 | Msa0933100 | 0.804309 | 2.298569e-49 | -8.615850e-47 |
| Msa0411810 | Msa0969520 | 0.806964 | 6.368883e-50 | -8.615850e-47 |
| Msa0411810 | Msa1082500 | 0.812973 | 3.237348e-51 | -8.615850e-47 |
| Msa0411810 | Msa1090260 | 0.803379 | 3.584892e-49 | -8.615850e-47 |
| Msa0411810 | Msa1162550 | -0.801020 | 1.096451e-48 | -8.615850e-47 |
| Msa0411810 | Msa1233890 | 0.803279 | 3.761050e-49 | -8.615850e-47 |
| Msa0411810 | Msa1407600 | 0.802861 | 4.589754e-49 | -8.615850e-47 |
| Msa0411810 | Msa1427230 | 0.800313 | 1.528137e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411810 | MtrunA17_Chr3g0103231 | 91.949 | 472 | 29 | 1 | 1 | 472 | 1 | 463 | 0.0 | 886 |
| Msa0411810 | MtrunA17_Chr3g0103211 | 81.876 | 469 | 76 | 1 | 1 | 469 | 1 | 460 | 0.0 | 803 |
| Msa0411810 | MtrunA17_Chr3g0103221 | 78.243 | 478 | 88 | 3 | 1 | 471 | 1 | 469 | 0.0 | 770 |
| Msa0411810 | MtrunA17_Chr3g0103251 | 87.709 | 358 | 24 | 1 | 135 | 472 | 19 | 376 | 0.0 | 643 |
| Msa0411810 | MtrunA17_Chr5g0447221 | 68.750 | 448 | 129 | 3 | 23 | 469 | 29 | 466 | 0.0 | 642 |
| Msa0411810 | MtrunA17_Chr8g0384661 | 51.101 | 454 | 208 | 3 | 15 | 466 | 42 | 483 | 7.15e-176 | 502 |
| Msa0411810 | MtrunA17_Chr3g0125081 | 50.108 | 461 | 221 | 1 | 6 | 466 | 17 | 468 | 5.25e-175 | 499 |
| Msa0411810 | MtrunA17_Chr3g0103271 | 51.173 | 469 | 216 | 3 | 2 | 469 | 9 | 465 | 1.25e-174 | 498 |
| Msa0411810 | MtrunA17_Chr3g0125091 | 50.649 | 462 | 218 | 2 | 6 | 466 | 17 | 469 | 1.71e-174 | 498 |
| Msa0411810 | MtrunA17_Chr3g0125101 | 49.351 | 462 | 224 | 2 | 6 | 466 | 17 | 469 | 2.48e-170 | 488 |
| Msa0411810 | MtrunA17_Chr4g0037201 | 48.701 | 462 | 220 | 2 | 13 | 466 | 49 | 501 | 9.64e-170 | 488 |
| Msa0411810 | MtrunA17_Chr1g0159761 | 51.910 | 445 | 202 | 3 | 10 | 451 | 14 | 449 | 3.26e-169 | 484 |
| Msa0411810 | MtrunA17_Chr3g0140761 | 47.881 | 472 | 229 | 3 | 4 | 466 | 8 | 471 | 1.80e-165 | 475 |
| Msa0411810 | MtrunA17_Chr5g0447231 | 51.007 | 447 | 209 | 2 | 23 | 468 | 25 | 462 | 1.78e-160 | 462 |
| Msa0411810 | MtrunA17_Chr1g0146491 | 47.007 | 451 | 228 | 2 | 16 | 463 | 16 | 458 | 6.25e-160 | 461 |
| Msa0411810 | MtrunA17_Chr3g0130641 | 47.903 | 453 | 222 | 3 | 16 | 466 | 26 | 466 | 1.21e-156 | 453 |
| Msa0411810 | MtrunA17_Chr3g0130651 | 50.115 | 435 | 201 | 4 | 11 | 443 | 14 | 434 | 4.06e-152 | 441 |
| Msa0411810 | MtrunA17_Chr1g0206871 | 45.815 | 454 | 224 | 3 | 23 | 464 | 15 | 458 | 9.23e-149 | 432 |
| Msa0411810 | MtrunA17_Chr3g0140531 | 42.398 | 467 | 261 | 4 | 1 | 466 | 1 | 460 | 6.87e-137 | 402 |
| Msa0411810 | MtrunA17_Chr3g0140541 | 42.198 | 455 | 254 | 3 | 9 | 463 | 11 | 456 | 6.83e-128 | 379 |
| Msa0411810 | MtrunA17_Chr1g0146411 | 41.031 | 446 | 249 | 3 | 17 | 462 | 27 | 458 | 9.23e-128 | 379 |
| Msa0411810 | MtrunA17_Chr2g0293331 | 41.850 | 454 | 249 | 5 | 16 | 466 | 5 | 446 | 2.64e-127 | 377 |
| Msa0411810 | MtrunA17_Chr1g0146331 | 40.179 | 448 | 258 | 4 | 17 | 463 | 14 | 452 | 1.92e-125 | 373 |
| Msa0411810 | MtrunA17_Chr1g0146391 | 39.062 | 448 | 264 | 4 | 17 | 464 | 6 | 444 | 3.89e-122 | 364 |
| Msa0411810 | MtrunA17_Chr1g0206851 | 45.609 | 353 | 179 | 3 | 115 | 466 | 30 | 370 | 2.11e-110 | 331 |
| Msa0411810 | MtrunA17_Chr1g0206831 | 47.447 | 333 | 162 | 3 | 135 | 466 | 13 | 333 | 1.35e-107 | 323 |
| Msa0411810 | MtrunA17_Chr3g0103261 | 98.519 | 135 | 2 | 0 | 1 | 135 | 1 | 135 | 7.63e-91 | 273 |
| Msa0411810 | MtrunA17_Chr5g0402151 | 45.364 | 302 | 125 | 3 | 26 | 327 | 3 | 264 | 1.94e-87 | 269 |
| Msa0411810 | MtrunA17_Chr1g0206821 | 53.555 | 211 | 98 | 0 | 256 | 466 | 310 | 520 | 7.60e-77 | 249 |
| Msa0411810 | MtrunA17_Chr1g0206821 | 44.106 | 263 | 129 | 4 | 7 | 260 | 1 | 254 | 2.58e-67 | 224 |
| Msa0411810 | MtrunA17_Chr3g0130671 | 48.117 | 239 | 111 | 3 | 1 | 237 | 19 | 246 | 2.86e-66 | 214 |
| Msa0411810 | MtrunA17_Chr3g0130661 | 48.824 | 170 | 82 | 2 | 295 | 463 | 2 | 167 | 8.71e-54 | 178 |
| Msa0411810 | MtrunA17_Chr6g0458931 | 27.400 | 427 | 262 | 12 | 22 | 441 | 41 | 426 | 4.55e-40 | 149 |
| Msa0411810 | MtrunA17_Chr4g0057851 | 27.494 | 411 | 248 | 10 | 34 | 438 | 21 | 387 | 3.77e-39 | 146 |
| Msa0411810 | MtrunA17_Chr8g0376991 | 26.767 | 467 | 296 | 9 | 5 | 466 | 3 | 428 | 1.34e-38 | 145 |
| Msa0411810 | MtrunA17_Chr2g0331721 | 26.498 | 434 | 274 | 10 | 10 | 438 | 32 | 425 | 8.30e-38 | 144 |
| Msa0411810 | MtrunA17_Chr7g0230011 | 28.809 | 361 | 216 | 9 | 10 | 353 | 3 | 339 | 7.17e-34 | 132 |
| Msa0411810 | MtrunA17_Chr5g0422741 | 27.790 | 457 | 281 | 13 | 18 | 469 | 22 | 434 | 3.07e-33 | 130 |
| Msa0411810 | MtrunA17_Chr1g0206841 | 56.190 | 105 | 44 | 1 | 1 | 105 | 1 | 103 | 3.42e-32 | 118 |
| Msa0411810 | MtrunA17_Chr1g0206861 | 61.957 | 92 | 34 | 1 | 16 | 106 | 14 | 105 | 1.57e-30 | 115 |
| Msa0411810 | MtrunA17_Chr3g0122921 | 25.636 | 472 | 281 | 15 | 8 | 471 | 16 | 425 | 1.68e-30 | 122 |
| Msa0411810 | MtrunA17_Chr1g0198531 | 25.862 | 464 | 293 | 11 | 10 | 467 | 12 | 430 | 1.93e-30 | 122 |
| Msa0411810 | MtrunA17_Chr6g0459021 | 27.231 | 437 | 272 | 11 | 34 | 466 | 45 | 439 | 6.86e-29 | 118 |
| Msa0411810 | MtrunA17_Chr1g0184721 | 24.183 | 459 | 301 | 15 | 14 | 466 | 13 | 430 | 7.60e-29 | 118 |
| Msa0411810 | MtrunA17_Chr6g0459011 | 25.866 | 433 | 273 | 9 | 39 | 466 | 1 | 390 | 8.67e-29 | 117 |
| Msa0411810 | MtrunA17_Chr3g0077651 | 27.353 | 340 | 216 | 7 | 22 | 354 | 51 | 366 | 5.32e-28 | 116 |
| Msa0411810 | MtrunA17_Chr6g0458921 | 25.532 | 470 | 296 | 12 | 1 | 466 | 1 | 420 | 8.50e-28 | 115 |
| Msa0411810 | MtrunA17_Chr6g0459031 | 25.957 | 470 | 294 | 12 | 1 | 466 | 1 | 420 | 1.24e-27 | 114 |
| Msa0411810 | MtrunA17_Chr1g0198541 | 26.107 | 429 | 265 | 12 | 19 | 440 | 20 | 403 | 1.18e-25 | 108 |
| Msa0411810 | MtrunA17_Chr2g0328081 | 26.154 | 390 | 239 | 9 | 18 | 401 | 9 | 355 | 2.57e-24 | 105 |
| Msa0411810 | MtrunA17_Chr6g0459001 | 24.843 | 479 | 307 | 9 | 21 | 471 | 20 | 473 | 4.76e-24 | 104 |
| Msa0411810 | MtrunA17_Chr4g0038711 | 25.298 | 419 | 268 | 11 | 24 | 430 | 71 | 456 | 2.03e-23 | 102 |
| Msa0411810 | MtrunA17_Chr4g0027241 | 26.328 | 433 | 262 | 15 | 4 | 422 | 19 | 408 | 2.24e-23 | 102 |
| Msa0411810 | MtrunA17_Chr1g0198081 | 24.069 | 403 | 263 | 13 | 34 | 430 | 70 | 435 | 9.16e-23 | 100 |
| Msa0411810 | MtrunA17_Chr1g0146351 | 48.980 | 98 | 49 | 1 | 34 | 131 | 14 | 110 | 1.58e-22 | 92.4 |
| Msa0411810 | MtrunA17_Chr8g0387941 | 25.376 | 465 | 285 | 19 | 17 | 465 | 18 | 436 | 1.58e-19 | 90.9 |
| Msa0411810 | MtrunA17_Chr1g0159751 | 57.692 | 52 | 22 | 0 | 273 | 324 | 1 | 52 | 6.11e-14 | 67.0 |
| Msa0411810 | MtrunA17_Chr4g0058161 | 25.000 | 420 | 258 | 16 | 54 | 466 | 71 | 440 | 7.49e-13 | 70.5 |
| Msa0411810 | MtrunA17_Chr2g0281341 | 23.810 | 357 | 237 | 9 | 23 | 363 | 95 | 432 | 1.39e-12 | 69.7 |
| Msa0411810 | MtrunA17_Chr5g0436281 | 23.284 | 408 | 252 | 12 | 54 | 451 | 4 | 360 | 4.81e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411810 | AT5G23810.1 | 57.489 | 454 | 179 | 4 | 19 | 467 | 21 | 465 | 7.03e-176 | 502 |
| Msa0411810 | AT1G77380.1 | 52.477 | 444 | 200 | 2 | 10 | 451 | 16 | 450 | 1.76e-174 | 498 |
| Msa0411810 | AT5G09220.1 | 49.780 | 454 | 216 | 3 | 16 | 466 | 38 | 482 | 6.81e-172 | 493 |
| Msa0411810 | AT5G63850.1 | 50.000 | 454 | 215 | 3 | 16 | 466 | 11 | 455 | 1.08e-169 | 486 |
| Msa0411810 | AT1G44100.1 | 50.968 | 465 | 207 | 4 | 12 | 466 | 16 | 469 | 1.47e-169 | 486 |
| Msa0411810 | AT1G10010.2 | 47.579 | 475 | 239 | 3 | 1 | 471 | 2 | 470 | 3.78e-165 | 475 |
| Msa0411810 | AT1G10010.1 | 47.579 | 475 | 239 | 3 | 1 | 471 | 1 | 469 | 4.35e-165 | 474 |
| Msa0411810 | AT1G58360.1 | 46.436 | 463 | 242 | 2 | 2 | 464 | 15 | 471 | 6.01e-164 | 472 |
| Msa0411810 | AT5G49630.1 | 46.436 | 463 | 236 | 3 | 8 | 466 | 17 | 471 | 4.25e-158 | 457 |
| Msa0411810 | AT5G23810.2 | 58.716 | 327 | 123 | 3 | 19 | 342 | 21 | 338 | 1.13e-124 | 367 |
| Msa0411810 | AT5G23810.4 | 53.878 | 245 | 101 | 3 | 19 | 260 | 21 | 256 | 3.30e-82 | 255 |
| Msa0411810 | AT5G23810.5 | 55.155 | 194 | 84 | 2 | 19 | 209 | 21 | 214 | 9.46e-66 | 211 |
| Msa0411810 | AT5G23810.3 | 55.155 | 194 | 84 | 2 | 19 | 209 | 21 | 214 | 9.46e-66 | 211 |
| Msa0411810 | AT1G61270.1 | 25.778 | 450 | 284 | 9 | 22 | 464 | 32 | 438 | 6.11e-38 | 144 |
| Msa0411810 | AT5G40780.1 | 25.397 | 441 | 278 | 11 | 34 | 467 | 44 | 440 | 1.22e-34 | 135 |
| Msa0411810 | AT3G01760.1 | 25.170 | 441 | 284 | 12 | 22 | 455 | 30 | 431 | 3.02e-33 | 131 |
| Msa0411810 | AT1G24400.1 | 26.966 | 445 | 259 | 13 | 34 | 464 | 39 | 431 | 3.76e-33 | 130 |
| Msa0411810 | AT5G40780.3 | 25.000 | 436 | 276 | 11 | 39 | 467 | 1 | 392 | 1.28e-32 | 128 |
| Msa0411810 | AT5G40780.2 | 25.000 | 436 | 276 | 11 | 39 | 467 | 1 | 392 | 1.28e-32 | 128 |
| Msa0411810 | AT1G67640.1 | 26.966 | 445 | 272 | 11 | 34 | 472 | 39 | 436 | 1.13e-30 | 124 |
| Msa0411810 | AT1G48640.1 | 24.444 | 450 | 292 | 9 | 22 | 468 | 39 | 443 | 5.75e-30 | 122 |
| Msa0411810 | AT1G25530.1 | 25.647 | 464 | 299 | 10 | 8 | 467 | 12 | 433 | 9.34e-29 | 118 |
| Msa0411810 | AT1G71680.2 | 28.190 | 337 | 210 | 8 | 22 | 352 | 33 | 343 | 1.99e-25 | 107 |
| Msa0411810 | AT1G71680.1 | 28.190 | 337 | 210 | 8 | 22 | 352 | 33 | 343 | 9.17e-25 | 107 |
| Msa0411810 | AT1G08230.2 | 27.047 | 403 | 237 | 15 | 34 | 422 | 38 | 397 | 2.69e-16 | 81.3 |
| Msa0411810 | AT5G41800.1 | 23.617 | 470 | 284 | 19 | 17 | 463 | 16 | 433 | 1.31e-15 | 79.3 |
| Msa0411810 | AT2G39890.2 | 23.659 | 410 | 248 | 17 | 54 | 451 | 63 | 419 | 1.40e-13 | 73.2 |
| Msa0411810 | AT2G39890.1 | 23.659 | 410 | 248 | 17 | 54 | 451 | 63 | 419 | 1.40e-13 | 73.2 |
| Msa0411810 | AT2G39890.3 | 23.659 | 410 | 248 | 17 | 54 | 451 | 4 | 360 | 1.57e-13 | 72.4 |
| Msa0411810 | AT2G36590.1 | 23.885 | 381 | 239 | 11 | 54 | 430 | 57 | 390 | 1.60e-13 | 72.8 |
Find 122 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATAATGCTTACTTTATT+TGG | 0.040040 | 3_2:-54359148 | Msa0411810:three_prime_UTR |
| CCTTACTTCAACTCAGTTCT+AGG | 0.156826 | 3_2:-54359388 | Msa0411810:CDS |
| GATAGGGATTAAGATATTTA+AGG | 0.177898 | 3_2:-54359074 | Msa0411810:three_prime_UTR |
| TGCAGAAAATGGAAGAATTA+TGG | 0.179312 | 3_2:-54360766 | Msa0411810:CDS |
| TATTAGGAGCTATAAATTTC+TGG | 0.200136 | 3_2:-54359363 | Msa0411810:CDS |
| TCAACTTGTATATTATTAAA+TGG | 0.211424 | 3_2:+54359033 | None:intergenic |
| TAATAATGCTTACTTTATTT+GGG | 0.219006 | 3_2:-54359147 | Msa0411810:three_prime_UTR |
| TTGAATTTGAATCATATTCT+TGG | 0.237090 | 3_2:-54362213 | Msa0411810:five_prime_UTR |
| AACTCAGTTCTAGGATTATT+AGG | 0.246030 | 3_2:-54359379 | Msa0411810:CDS |
| TTGGAGCTTGGACTAGAAAA+TGG | 0.253711 | 3_2:-54359291 | Msa0411810:CDS |
| TGCTTTGGATATGCAGCTTT+TGG | 0.255768 | 3_2:-54360438 | Msa0411810:CDS |
| CATATCATCACAGCAGTTAT+TGG | 0.260349 | 3_2:-54361992 | Msa0411810:CDS |
| TATGAGGTAATTATTATATA+AGG | 0.261161 | 3_2:+54362377 | None:intergenic |
| AGAAATCCTGATTCGGTAAC+TGG | 0.263130 | 3_2:-54361848 | Msa0411810:CDS |
| AAATAAAGTAAGCATTATTA+AGG | 0.273350 | 3_2:+54359150 | None:intergenic |
| CCATAACATGGCTTGGGTTT+CGG | 0.279944 | 3_2:-54360981 | Msa0411810:CDS |
| CACCAAGCTCCTTGTAATTA+TGG | 0.294590 | 3_2:-54361067 | Msa0411810:CDS |
| AGAATTATGGGAAGTTTAAC+AGG | 0.296794 | 3_2:-54360753 | Msa0411810:CDS |
| GGAAATCTCTTGACAGGGTT+TGG | 0.296932 | 3_2:-54360402 | Msa0411810:CDS |
| TTCTGTAACAATCAGATAAA+AGG | 0.300294 | 3_2:+54361867 | None:intergenic |
| TCATTTGGTCGGCGGCTATC+AGG | 0.304160 | 3_2:-54360328 | Msa0411810:intron |
| TACCTATGCTGTGGCTGCTT+TGG | 0.304448 | 3_2:-54360453 | Msa0411810:CDS |
| AATCGCGTTATTGCAGAAAA+TGG | 0.313689 | 3_2:-54360777 | Msa0411810:CDS |
| CTAGAAAATGGATTGTTCTA+AGG | 0.318873 | 3_2:-54359279 | Msa0411810:CDS |
| GTCACAATGGTTGGATTTGT+TGG | 0.330720 | 3_2:-54359232 | Msa0411810:CDS |
| TCAAGAAGGATAATTGAATA+TGG | 0.335571 | 3_2:+54360657 | None:intergenic |
| CTTCAAATTACAAAAGCTTC+TGG | 0.337199 | 3_2:-54362166 | Msa0411810:CDS |
| CAAAATCTGGTTAATCTTCC+AGG | 0.338409 | 3_2:-54360706 | Msa0411810:CDS |
| GCAGAAAATGGAAGAATTAT+GGG | 0.345376 | 3_2:-54360765 | Msa0411810:CDS |
| CCAATGTAAATAAGCCAATA+AGG | 0.348488 | 3_2:+54360369 | None:intergenic |
| AACCCTGTCAAGAGATTTCC+TGG | 0.353548 | 3_2:+54360405 | None:intergenic |
| ATAGCATATAGTAATTATAT+TGG | 0.358357 | 3_2:+54362302 | None:intergenic |
| TGCTTTCTTGTCACAATGGT+TGG | 0.359600 | 3_2:-54359241 | Msa0411810:CDS |
| CTAAAGTTCCTAACAAAATC+TGG | 0.359899 | 3_2:-54360719 | Msa0411810:CDS |
| AATTATCCTTCTTGAGATAC+AGG | 0.364268 | 3_2:-54360649 | Msa0411810:intron |
| ATAGGGATTAAGATATTTAA+GGG | 0.366816 | 3_2:-54359073 | Msa0411810:three_prime_UTR |
| TGTTTGTATTATCATTCATT+TGG | 0.389709 | 3_2:-54360343 | Msa0411810:CDS |
| AGAGAGAAAATTAGTGGAAA+AGG | 0.394800 | 3_2:-54359190 | Msa0411810:CDS |
| ATAGAGGAAGTTTCACTTTG+TGG | 0.396172 | 3_2:+54359494 | None:intergenic |
| CTATCAGCAGTGCTATATAT+TGG | 0.398528 | 3_2:+54359562 | None:intergenic |
| TGTACAAAGTACATTTCTAC+TGG | 0.402848 | 3_2:+54359322 | None:intergenic |
| CCGAAACCCAAGCCATGTTA+TGG | 0.410102 | 3_2:+54360981 | None:intergenic |
| ATCTCAAAAGCTGGTAATAG+AGG | 0.416607 | 3_2:+54359478 | None:intergenic |
| TACAGAAGAAAGTTGGAGCT+TGG | 0.429896 | 3_2:-54359303 | Msa0411810:CDS |
| ATCACAGCAGTTATTGGTTC+CGG | 0.434147 | 3_2:-54361986 | Msa0411810:CDS |
| GCACAACAAAGCAAGGTAAC+TGG | 0.434792 | 3_2:+54361914 | None:intergenic |
| AACTTGTATATGATGCTGTT+TGG | 0.437628 | 3_2:-54361040 | Msa0411810:CDS |
| AGCTATAAATTTCTGGCCAT+TGG | 0.438131 | 3_2:-54359356 | Msa0411810:CDS |
| GGATTTGTTGGATCATTTGA+AGG | 0.441279 | 3_2:-54359220 | Msa0411810:CDS |
| ATCATAAGAGAGAAAATTAG+TGG | 0.441440 | 3_2:-54359196 | Msa0411810:CDS |
| TTCATTGTTTGATTCTCTTG+TGG | 0.443853 | 3_2:+54360516 | None:intergenic |
| TATATAGCACTGCTGATAGA+TGG | 0.445501 | 3_2:-54359558 | Msa0411810:CDS |
| AGAATATGATTCAAATTCAA+TGG | 0.447370 | 3_2:+54362216 | None:intergenic |
| TCAACCACAAAGCCACTGTT+GGG | 0.449153 | 3_2:+54359520 | None:intergenic |
| ATAGGAGAATTACTTCAAAC+TGG | 0.449963 | 3_2:+54361593 | None:intergenic |
| ATACCCCAACAGTGGCTTTG+TGG | 0.453124 | 3_2:-54359524 | Msa0411810:CDS |
| ACACCAGGAAATCTCTTGAC+AGG | 0.456267 | 3_2:-54360408 | Msa0411810:CDS |
| CCTAGAACTGAGTTGAAGTA+AGG | 0.457809 | 3_2:+54359388 | None:intergenic |
| CTTTATTTGGGGTTGTACAT+TGG | 0.462786 | 3_2:-54359135 | Msa0411810:three_prime_UTR |
| CGGATCTCCATAACATGGCT+TGG | 0.466830 | 3_2:-54360988 | Msa0411810:CDS |
| ATGATGATGGACATGCAAAA+AGG | 0.466879 | 3_2:-54362135 | Msa0411810:CDS |
| AGGCAACATCACCAAGTGCC+TGG | 0.470572 | 3_2:+54360688 | None:intergenic |
| GATGCTGTTAGAGTTAATCT+TGG | 0.473459 | 3_2:-54361803 | Msa0411810:intron |
| TGTATTATCATTCATTTGGT+CGG | 0.476158 | 3_2:-54360339 | Msa0411810:CDS |
| AAGGATAATTGAATATGGAT+TGG | 0.477388 | 3_2:+54360662 | None:intergenic |
| AATTGAATATGGATTGGAAA+AGG | 0.478870 | 3_2:+54360668 | None:intergenic |
| GGATCTCCATAACATGGCTT+GGG | 0.481533 | 3_2:-54360987 | Msa0411810:CDS |
| TGCTTGCTTTCTTGTCACAA+TGG | 0.485278 | 3_2:-54359245 | Msa0411810:CDS |
| CCTTATTGGCTTATTTACAT+TGG | 0.486080 | 3_2:-54360369 | Msa0411810:CDS |
| TACTTTGTACAGAAGAAAGT+TGG | 0.497035 | 3_2:-54359310 | Msa0411810:CDS |
| ACTGCTCAACTAGGATGGAT+TGG | 0.498130 | 3_2:-54361941 | Msa0411810:CDS |
| TTACTTCAAACTGGTGGCTG+TGG | 0.499027 | 3_2:+54361602 | None:intergenic |
| TATAGTAATTATATTGGCAT+GGG | 0.501139 | 3_2:+54362308 | None:intergenic |
| TGGTTAATCTTCCAGGCACT+TGG | 0.501530 | 3_2:-54360699 | Msa0411810:CDS |
| CTGATTCGGTAACTGGGAAA+AGG | 0.501707 | 3_2:-54361841 | Msa0411810:CDS |
| CACCATAATTACAAGGAGCT+TGG | 0.503623 | 3_2:+54361065 | None:intergenic |
| TCAAATTGCTATCATAAAGA+AGG | 0.504054 | 3_2:-54361091 | Msa0411810:CDS |
| ATTGTTTGATTCTCTTGTGG+AGG | 0.509307 | 3_2:+54360519 | None:intergenic |
| GGATTAAGATATTTAAGGGA+TGG | 0.513676 | 3_2:-54359069 | Msa0411810:three_prime_UTR |
| GATTGTAATGTCGTTCATAC+CGG | 0.514727 | 3_2:-54361008 | Msa0411810:CDS |
| CAAGCCATGTTATGGAGATC+CGG | 0.515900 | 3_2:+54360989 | None:intergenic |
| TAAAATAAGAACATCTGCAT+TGG | 0.516785 | 3_2:-54362268 | Msa0411810:five_prime_UTR |
| TTGTTACAGAAATCCTGATT+CGG | 0.518368 | 3_2:-54361855 | Msa0411810:CDS |
| ATCAACCACAAAGCCACTGT+TGG | 0.518974 | 3_2:+54359519 | None:intergenic |
| CTGCATGATCTGTGATTATG+AGG | 0.527869 | 3_2:+54362361 | None:intergenic |
| AAAAGATTTATCTCAAAAGC+TGG | 0.538707 | 3_2:+54359469 | None:intergenic |
| GAAATCCTGATTCGGTAACT+GGG | 0.541547 | 3_2:-54361847 | Msa0411810:CDS |
| CATAAGAGAACATATGTGGC+TGG | 0.547798 | 3_2:-54361675 | Msa0411810:CDS |
| TCATTTACATACTCGTTCAT+CGG | 0.550099 | 3_2:-54360941 | Msa0411810:CDS |
| TCTGGTGCTTATGATGATGA+TGG | 0.551479 | 3_2:-54362148 | Msa0411810:CDS |
| AATAATGCTTACTTTATTTG+GGG | 0.553190 | 3_2:-54359146 | Msa0411810:three_prime_UTR |
| GAAAAGGAACTACTCTTACA+TGG | 0.555365 | 3_2:-54361825 | Msa0411810:CDS |
| GGAGTACTGCTCAACTAGGA+TGG | 0.557246 | 3_2:-54361946 | Msa0411810:CDS |
| AGCTATGTGATTTCAACCAC+TGG | 0.557700 | 3_2:-54359427 | Msa0411810:CDS |
| ACATACTCGTTCATCGGACT+AGG | 0.557789 | 3_2:-54360935 | Msa0411810:CDS |
| TCGTTCATCGGACTAGGACT+TGG | 0.565860 | 3_2:-54360929 | Msa0411810:CDS |
| ATATAGTAATTATATTGGCA+TGG | 0.572477 | 3_2:+54362307 | None:intergenic |
| AACTATTGCACAACAAAGCA+AGG | 0.575679 | 3_2:+54361907 | None:intergenic |
| CACCAGGAAATCTCTTGACA+GGG | 0.578235 | 3_2:-54360407 | Msa0411810:CDS |
| TTAATGTAATGTAATAGTAG+TGG | 0.583560 | 3_2:-54359112 | Msa0411810:three_prime_UTR |
| AAGGTACCTGTATCTCAAGA+AGG | 0.587507 | 3_2:+54360643 | None:intergenic |
| GCTCAACTAGGATGGATTGG+AGG | 0.592122 | 3_2:-54361938 | Msa0411810:CDS |
| GCATGGAGTACTGCTCAACT+AGG | 0.605078 | 3_2:-54361950 | Msa0411810:CDS |
| ACTGGGAAATATATAGCCAA+TGG | 0.606675 | 3_2:+54359340 | None:intergenic |
| AGGTCATAAGAGAACATATG+TGG | 0.612533 | 3_2:-54361679 | Msa0411810:CDS |
| ATTATCATTCATTTGGTCGG+CGG | 0.615061 | 3_2:-54360336 | Msa0411810:CDS |
| GGCAACACTAGTCCCATACA+AGG | 0.621147 | 3_2:+54361635 | None:intergenic |
| ATAGTAATTATATTGGCATG+GGG | 0.621448 | 3_2:+54362309 | None:intergenic |
| AAGTTACCACCATAATTACA+AGG | 0.636485 | 3_2:+54361058 | None:intergenic |
| CATACCGGATCTCCATAACA+TGG | 0.636804 | 3_2:-54360993 | Msa0411810:CDS |
| GTACAAAGTACATTTCTACT+GGG | 0.641752 | 3_2:+54359323 | None:intergenic |
| ACATTCTTCTACCTATGCTG+TGG | 0.646044 | 3_2:-54360462 | Msa0411810:CDS |
| GGAGAATTACTTCAAACTGG+TGG | 0.648453 | 3_2:+54361596 | None:intergenic |
| TGTAATGAAGATTGCAACCA+TGG | 0.649304 | 3_2:+54360485 | None:intergenic |
| CAACCACAAAGCCACTGTTG+GGG | 0.657802 | 3_2:+54359521 | None:intergenic |
| CAAGCTCCTTGTAATTATGG+TGG | 0.659202 | 3_2:-54361064 | Msa0411810:CDS |
| AGGAAATTTAAAGAGTGCTG+TGG | 0.662726 | 3_2:-54362017 | Msa0411810:CDS |
| AAATAGAATTGCTAGTCCAG+TGG | 0.666901 | 3_2:+54359411 | None:intergenic |
| ATCCAAAGCAGCCACAGCAT+AGG | 0.684779 | 3_2:+54360451 | None:intergenic |
| GGTGGCTGTGGTAAGTACAC+AGG | 0.685509 | 3_2:+54361614 | None:intergenic |
| CCATGCCAAAGACAAAACAC+CGG | 0.705880 | 3_2:+54361967 | None:intergenic |
| TAGTAATTATATTGGCATGG+GGG | 0.710364 | 3_2:+54362310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAAATTACAAATTTAT+TGG | + | chr3_2:54362325-54362344 | None:intergenic | 10.0% |
| !! | TATGAGGTAATTATTATATA+AGG | + | chr3_2:54358936-54358955 | None:intergenic | 15.0% |
| !! | ATAGCATATAGTAATTATAT+TGG | + | chr3_2:54359011-54359030 | None:intergenic | 15.0% |
| !! | ATAATTGTGTATTATTAGAT+TGG | + | chr3_2:54360169-54360188 | None:intergenic | 15.0% |
| !! | ATTAGAATATGAAATGTTTA+AGG | + | chr3_2:54360689-54360708 | None:intergenic | 15.0% |
| !! | TTAAGTTATGATAAATCAAA+AGG | + | chr3_2:54361064-54361083 | None:intergenic | 15.0% |
| !!! | TTTTGATTTATCATAACTTA+AGG | - | chr3_2:54361063-54361082 | Msa0411810:CDS | 15.0% |
| !! | AAATAAAGTAAGCATTATTA+AGG | + | chr3_2:54362163-54362182 | None:intergenic | 15.0% |
| !! | TTAATAATGCTTACTTTATT+TGG | - | chr3_2:54362162-54362181 | Msa0411810:CDS | 15.0% |
| !!! | TAATAATGCTTACTTTATTT+GGG | - | chr3_2:54362163-54362182 | Msa0411810:CDS | 15.0% |
| !! | TCAACTTGTATATTATTAAA+TGG | + | chr3_2:54362280-54362299 | None:intergenic | 15.0% |
| !! | AATTTGTAATTTGATATTGA+TGG | - | chr3_2:54362328-54362347 | Msa0411810:five_prime_UTR | 15.0% |
| !! | TATAGTAATTATATTGGCAT+GGG | + | chr3_2:54359005-54359024 | None:intergenic | 20.0% |
| !! | ATATAGTAATTATATTGGCA+TGG | + | chr3_2:54359006-54359025 | None:intergenic | 20.0% |
| !! | AGAATATGATTCAAATTCAA+TGG | + | chr3_2:54359097-54359116 | None:intergenic | 20.0% |
| !! | TTGAATTTGAATCATATTCT+TGG | - | chr3_2:54359097-54359116 | Msa0411810:three_prime_UTR | 20.0% |
| !! | ATCATATTCTTGGATAAAAA+TGG | - | chr3_2:54359107-54359126 | Msa0411810:three_prime_UTR | 20.0% |
| !! | TGTATATGAGAAAAATGAAT+TGG | + | chr3_2:54359244-54359263 | None:intergenic | 20.0% |
| !!! | ATTCATTTTTCTCATATACA+TGG | - | chr3_2:54359244-54359263 | Msa0411810:CDS | 20.0% |
| !!! | CTTTCAAGTTATAACTATTA+TGG | + | chr3_2:54359603-54359622 | None:intergenic | 20.0% |
| !! | TAATAGTTATAACTTGAAAG+TGG | - | chr3_2:54359603-54359622 | Msa0411810:intron | 20.0% |
| !! | TATTAGCACTAATTATACTT+TGG | - | chr3_2:54359849-54359868 | Msa0411810:intron | 20.0% |
| !! | ATTATTGTACTAATGAATAC+AGG | - | chr3_2:54360184-54360203 | Msa0411810:intron | 20.0% |
| !! | TTATTGTACTAATGAATACA+GGG | - | chr3_2:54360185-54360204 | Msa0411810:intron | 20.0% |
| !! | TGTTTGTATTATCATTCATT+TGG | - | chr3_2:54360967-54360986 | Msa0411810:CDS | 20.0% |
| !!! | AATTACTAGTGAATTTTGAT+TGG | + | chr3_2:54361019-54361038 | None:intergenic | 20.0% |
| !! | ATTATTGTTTCACATCTATA+TGG | - | chr3_2:54361698-54361717 | Msa0411810:intron | 20.0% |
| !!! | AATAATGCTTACTTTATTTG+GGG | - | chr3_2:54362164-54362183 | Msa0411810:CDS | 20.0% |
| !! | TTAATGTAATGTAATAGTAG+TGG | - | chr3_2:54362198-54362217 | Msa0411810:exon | 20.0% |
| !! | ATAGGGATTAAGATATTTAA+GGG | - | chr3_2:54362237-54362256 | Msa0411810:five_prime_UTR | 20.0% |
| ! | ATAGTAATTATATTGGCATG+GGG | + | chr3_2:54359004-54359023 | None:intergenic | 25.0% |
| ! | TAAAATAAGAACATCTGCAT+TGG | - | chr3_2:54359042-54359061 | Msa0411810:three_prime_UTR | 25.0% |
| ! | TATTCTTGGATAAAAATGGA+TGG | - | chr3_2:54359111-54359130 | Msa0411810:three_prime_UTR | 25.0% |
| ! | ATTCTTGGATAAAAATGGAT+GGG | - | chr3_2:54359112-54359131 | Msa0411810:three_prime_UTR | 25.0% |
| ! | TTCTGTAACAATCAGATAAA+AGG | + | chr3_2:54359446-54359465 | None:intergenic | 25.0% |
| !! | TTCAATTTTTGACCTTGTAT+GGG | - | chr3_2:54359663-54359682 | Msa0411810:intron | 25.0% |
| !! | GACTTATTTCCTTTTCTTTT+AGG | - | chr3_2:54359762-54359781 | Msa0411810:intron | 25.0% |
| ! | AACTTAGTTAAGCTCTTAAT+TGG | - | chr3_2:54359801-54359820 | Msa0411810:intron | 25.0% |
| ! | ACTTAGTTAAGCTCTTAATT+GGG | - | chr3_2:54359802-54359821 | Msa0411810:intron | 25.0% |
| !! | ATTGGGACTGATTTATTTAT+TGG | - | chr3_2:54359819-54359838 | Msa0411810:intron | 25.0% |
| !!! | TTTTGTTTTACCAAGCAATA+AGG | - | chr3_2:54359883-54359902 | Msa0411810:intron | 25.0% |
| !!! | TTTGTTTTACCAAGCAATAA+GGG | - | chr3_2:54359884-54359903 | Msa0411810:intron | 25.0% |
| ! | ATTGTGTATTATTAGATTGG+TGG | + | chr3_2:54360166-54360185 | None:intergenic | 25.0% |
| ! | TCAAATTGCTATCATAAAGA+AGG | - | chr3_2:54360219-54360238 | Msa0411810:intron | 25.0% |
| !! | AAGATTAACCAGATTTTGTT+AGG | + | chr3_2:54360602-54360621 | None:intergenic | 25.0% |
| !!! | AATTGAATATGGATTGGAAA+AGG | + | chr3_2:54360645-54360664 | None:intergenic | 25.0% |
| ! | AAGGATAATTGAATATGGAT+TGG | + | chr3_2:54360651-54360670 | None:intergenic | 25.0% |
| ! | TCAAGAAGGATAATTGAATA+TGG | + | chr3_2:54360656-54360675 | None:intergenic | 25.0% |
| ! | TATTGAATTATGTTGAGAAC+AGG | - | chr3_2:54360754-54360773 | Msa0411810:CDS | 25.0% |
| ! | TGTATTATCATTCATTTGGT+CGG | - | chr3_2:54360971-54360990 | Msa0411810:CDS | 25.0% |
| !!! | TAGTGAATTTTGATTGGTAA+GGG | + | chr3_2:54361013-54361032 | None:intergenic | 25.0% |
| !! | ACTTCATTGAAACTTTTGAA+AGG | - | chr3_2:54361168-54361187 | Msa0411810:intron | 25.0% |
| !!! | CTTCATTGAAACTTTTGAAA+GGG | - | chr3_2:54361169-54361188 | Msa0411810:intron | 25.0% |
| ! | TTATTATCCTTACTTAAGAC+TGG | + | chr3_2:54361564-54361583 | None:intergenic | 25.0% |
| ! | AAAAGATTTATCTCAAAAGC+TGG | + | chr3_2:54361844-54361863 | None:intergenic | 25.0% |
| ! | TATTAGGAGCTATAAATTTC+TGG | - | chr3_2:54361947-54361966 | Msa0411810:CDS | 25.0% |
| ! | ATCATAAGAGAGAAAATTAG+TGG | - | chr3_2:54362114-54362133 | Msa0411810:intron | 25.0% |
| ! | GATAGGGATTAAGATATTTA+AGG | - | chr3_2:54362236-54362255 | Msa0411810:five_prime_UTR | 25.0% |
| TAGTAATTATATTGGCATGG+GGG | + | chr3_2:54359003-54359022 | None:intergenic | 30.0% | |
| CTTCAAATTACAAAAGCTTC+TGG | - | chr3_2:54359144-54359163 | Msa0411810:three_prime_UTR | 30.0% | |
| !! | ATATCGAATATTGTTTCTGC+AGG | - | chr3_2:54359273-54359292 | Msa0411810:CDS | 30.0% |
| TTGTTACAGAAATCCTGATT+CGG | - | chr3_2:54359455-54359474 | Msa0411810:CDS | 30.0% | |
| ! | ATAACTTGAAAGTGGTTTTC+AGG | - | chr3_2:54359611-54359630 | Msa0411810:intron | 30.0% |
| CATACAAGGTCAAAAATTGA+AGG | + | chr3_2:54359664-54359683 | None:intergenic | 30.0% | |
| ! | CTTCAATTTTTGACCTTGTA+TGG | - | chr3_2:54359662-54359681 | Msa0411810:intron | 30.0% |
| ATAGGAGAATTACTTCAAAC+TGG | + | chr3_2:54359720-54359739 | None:intergenic | 30.0% | |
| !! | ATATTCATGAAGCGTTGAAT+AGG | + | chr3_2:54359738-54359757 | None:intergenic | 30.0% |
| TATTCAACGCTTCATGAATA+TGG | - | chr3_2:54359737-54359756 | Msa0411810:intron | 30.0% | |
| CAAATAGAGCCTAAAAGAAA+AGG | + | chr3_2:54359774-54359793 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTTAGGCTCTATT+TGG | - | chr3_2:54359772-54359791 | Msa0411810:intron | 30.0% |
| ! | AACAGCTTATAACTTGTATG+AGG | + | chr3_2:54360071-54360090 | None:intergenic | 30.0% |
| AAGTTACCACCATAATTACA+AGG | + | chr3_2:54360255-54360274 | None:intergenic | 30.0% | |
| AACTTGTATATGATGCTGTT+TGG | - | chr3_2:54360270-54360289 | Msa0411810:intron | 30.0% | |
| TCATTTACATACTCGTTCAT+CGG | - | chr3_2:54360369-54360388 | Msa0411810:CDS | 30.0% | |
| ATTGTTGCGACAATTATTGT+GGG | + | chr3_2:54360460-54360479 | None:intergenic | 30.0% | |
| AATTGTTGCGACAATTATTG+TGG | + | chr3_2:54360461-54360480 | None:intergenic | 30.0% | |
| AACTCAACGTCTATATTTCA+TGG | + | chr3_2:54360512-54360531 | None:intergenic | 30.0% | |
| TGCAGAAAATGGAAGAATTA+TGG | - | chr3_2:54360544-54360563 | Msa0411810:intron | 30.0% | |
| GCAGAAAATGGAAGAATTAT+GGG | - | chr3_2:54360545-54360564 | Msa0411810:intron | 30.0% | |
| AGAATTATGGGAAGTTTAAC+AGG | - | chr3_2:54360557-54360576 | Msa0411810:intron | 30.0% | |
| CTAAAGTTCCTAACAAAATC+TGG | - | chr3_2:54360591-54360610 | Msa0411810:intron | 30.0% | |
| AATTATCCTTCTTGAGATAC+AGG | - | chr3_2:54360661-54360680 | Msa0411810:CDS | 30.0% | |
| TTCATTGTTTGATTCTCTTG+TGG | + | chr3_2:54360797-54360816 | None:intergenic | 30.0% | |
| !!! | TTGGATTTTTTGAGCCTTAT+TGG | - | chr3_2:54360927-54360946 | Msa0411810:CDS | 30.0% |
| CCAATGTAAATAAGCCAATA+AGG | + | chr3_2:54360944-54360963 | None:intergenic | 30.0% | |
| !! | CCTTATTGGCTTATTTACAT+TGG | - | chr3_2:54360941-54360960 | Msa0411810:CDS | 30.0% |
| !!! | CTAGTGAATTTTGATTGGTA+AGG | + | chr3_2:54361014-54361033 | None:intergenic | 30.0% |
| CAAAAGTTTCAATGAAGTGT+CGG | + | chr3_2:54361166-54361185 | None:intergenic | 30.0% | |
| TATTGAACCAGTCTTAAGTA+AGG | - | chr3_2:54361554-54361573 | Msa0411810:intron | 30.0% | |
| !! | AACTCAGTTCTAGGATTATT+AGG | - | chr3_2:54361931-54361950 | Msa0411810:CDS | 30.0% |
| GTACAAAGTACATTTCTACT+GGG | + | chr3_2:54361990-54362009 | None:intergenic | 30.0% | |
| TGTACAAAGTACATTTCTAC+TGG | + | chr3_2:54361991-54362010 | None:intergenic | 30.0% | |
| TACTTTGTACAGAAGAAAGT+TGG | - | chr3_2:54362000-54362019 | Msa0411810:CDS | 30.0% | |
| !! | CTAGAAAATGGATTGTTCTA+AGG | - | chr3_2:54362031-54362050 | Msa0411810:intron | 30.0% |
| AGAGAGAAAATTAGTGGAAA+AGG | - | chr3_2:54362120-54362139 | Msa0411810:intron | 30.0% | |
| ! | GTTTTCAGAGTTGTTAGATA+GGG | - | chr3_2:54362220-54362239 | Msa0411810:five_prime_UTR | 30.0% |
| GGATTAAGATATTTAAGGGA+TGG | - | chr3_2:54362241-54362260 | Msa0411810:five_prime_UTR | 30.0% | |
| !! | ATGATGATGGACATGCAAAA+AGG | - | chr3_2:54359175-54359194 | Msa0411810:exon | 35.0% |
| !! | AGGAAATTTAAAGAGTGCTG+TGG | - | chr3_2:54359293-54359312 | Msa0411810:CDS | 35.0% |
| CATATCATCACAGCAGTTAT+TGG | - | chr3_2:54359318-54359337 | Msa0411810:CDS | 35.0% | |
| AACTATTGCACAACAAAGCA+AGG | + | chr3_2:54359406-54359425 | None:intergenic | 35.0% | |
| GAAAAGGAACTACTCTTACA+TGG | - | chr3_2:54359485-54359504 | Msa0411810:CDS | 35.0% | |
| GATGCTGTTAGAGTTAATCT+TGG | - | chr3_2:54359507-54359526 | Msa0411810:CDS | 35.0% | |
| AGGTCATAAGAGAACATATG+TGG | - | chr3_2:54359631-54359650 | Msa0411810:intron | 35.0% | |
| CTGCACTACTAATTTCATTC+AGG | + | chr3_2:54359938-54359957 | None:intergenic | 35.0% | |
| CTGAATGAAATTAGTAGTGC+AGG | - | chr3_2:54359936-54359955 | Msa0411810:intron | 35.0% | |
| AAGCTATGTACAAAGTTGAG+TGG | + | chr3_2:54359969-54359988 | None:intergenic | 35.0% | |
| CCTATATGTTACATGCTTAG+AGG | + | chr3_2:54359994-54360013 | None:intergenic | 35.0% | |
| CCTCTAAGCATGTAACATAT+AGG | - | chr3_2:54359991-54360010 | Msa0411810:intron | 35.0% | |
| ! | CATTAGCTATCGTTAGCTTA+TGG | - | chr3_2:54360093-54360112 | Msa0411810:intron | 35.0% |
| GATTGTAATGTCGTTCATAC+CGG | - | chr3_2:54360302-54360321 | Msa0411810:intron | 35.0% | |
| AATCGCGTTATTGCAGAAAA+TGG | - | chr3_2:54360533-54360552 | Msa0411810:CDS | 35.0% | |
| CAAAATCTGGTTAATCTTCC+AGG | - | chr3_2:54360604-54360623 | Msa0411810:intron | 35.0% | |
| ATTGTTTGATTCTCTTGTGG+AGG | + | chr3_2:54360794-54360813 | None:intergenic | 35.0% | |
| !! | AACAATGAAAAAAGCGTCCA+TGG | - | chr3_2:54360808-54360827 | Msa0411810:intron | 35.0% |
| TGTAATGAAGATTGCAACCA+TGG | + | chr3_2:54360828-54360847 | None:intergenic | 35.0% | |
| ATTATCATTCATTTGGTCGG+CGG | - | chr3_2:54360974-54360993 | Msa0411810:CDS | 35.0% | |
| AGCATTAGTGTAGTGTATGT+AGG | - | chr3_2:54361284-54361303 | Msa0411810:intron | 35.0% | |
| ! | CAAATAAGAAAGCACAGCAT+AGG | + | chr3_2:54361450-54361469 | None:intergenic | 35.0% |
| GGTTCAATACTAGGTAACAT+GGG | + | chr3_2:54361543-54361562 | None:intergenic | 35.0% | |
| TGGTTCAATACTAGGTAACA+TGG | + | chr3_2:54361544-54361563 | None:intergenic | 35.0% | |
| ! | CTTAAGACTGGTTCAATACT+AGG | + | chr3_2:54361552-54361571 | None:intergenic | 35.0% |
| ACATGACAAAACAGTGAAAG+AGG | + | chr3_2:54361662-54361681 | None:intergenic | 35.0% | |
| CTATCAGCAGTGCTATATAT+TGG | + | chr3_2:54361751-54361770 | None:intergenic | 35.0% | |
| TATATAGCACTGCTGATAGA+TGG | - | chr3_2:54361752-54361771 | Msa0411810:intron | 35.0% | |
| TCAAAAAAATACCCCAACAG+TGG | - | chr3_2:54361778-54361797 | Msa0411810:intron | 35.0% | |
| ATAGAGGAAGTTTCACTTTG+TGG | + | chr3_2:54361819-54361838 | None:intergenic | 35.0% | |
| ATCTCAAAAGCTGGTAATAG+AGG | + | chr3_2:54361835-54361854 | None:intergenic | 35.0% | |
| AAATAGAATTGCTAGTCCAG+TGG | + | chr3_2:54361902-54361921 | None:intergenic | 35.0% | |
| !! | AGCTATAAATTTCTGGCCAT+TGG | - | chr3_2:54361954-54361973 | Msa0411810:CDS | 35.0% |
| ACTGGGAAATATATAGCCAA+TGG | + | chr3_2:54361973-54361992 | None:intergenic | 35.0% | |
| !! | GGATTTGTTGGATCATTTGA+AGG | - | chr3_2:54362090-54362109 | Msa0411810:intron | 35.0% |
| ! | CTTTATTTGGGGTTGTACAT+TGG | - | chr3_2:54362175-54362194 | Msa0411810:CDS | 35.0% |
| ! | GGTTTTCAGAGTTGTTAGAT+AGG | - | chr3_2:54362219-54362238 | Msa0411810:five_prime_UTR | 35.0% |
| CTGCATGATCTGTGATTATG+AGG | + | chr3_2:54358952-54358971 | None:intergenic | 40.0% | |
| ! | TCTGGTGCTTATGATGATGA+TGG | - | chr3_2:54359162-54359181 | Msa0411810:three_prime_UTR | 40.0% |
| !! | ATCACAGCAGTTATTGGTTC+CGG | - | chr3_2:54359324-54359343 | Msa0411810:CDS | 40.0% |
| !! | AGAAATCCTGATTCGGTAAC+TGG | - | chr3_2:54359462-54359481 | Msa0411810:CDS | 40.0% |
| !! | GAAATCCTGATTCGGTAACT+GGG | - | chr3_2:54359463-54359482 | Msa0411810:CDS | 40.0% |
| CATAAGAGAACATATGTGGC+TGG | - | chr3_2:54359635-54359654 | Msa0411810:intron | 40.0% | |
| GGAGAATTACTTCAAACTGG+TGG | + | chr3_2:54359717-54359736 | None:intergenic | 40.0% | |
| AACTACATGCCCTTATTGCT+TGG | + | chr3_2:54359896-54359915 | None:intergenic | 40.0% | |
| ! | AAGCAATAAGGGCATGTAGT+TGG | - | chr3_2:54359895-54359914 | Msa0411810:intron | 40.0% |
| CACCAAGCTCCTTGTAATTA+TGG | - | chr3_2:54360243-54360262 | Msa0411810:intron | 40.0% | |
| CACCATAATTACAAGGAGCT+TGG | + | chr3_2:54360248-54360267 | None:intergenic | 40.0% | |
| CAAGCTCCTTGTAATTATGG+TGG | - | chr3_2:54360246-54360265 | Msa0411810:intron | 40.0% | |
| TTGCGACAATTATTGTGGGA+CGG | + | chr3_2:54360456-54360475 | None:intergenic | 40.0% | |
| ! | AAGGTACCTGTATCTCAAGA+AGG | + | chr3_2:54360670-54360689 | None:intergenic | 40.0% |
| ACATTCTTCTACCTATGCTG+TGG | - | chr3_2:54360848-54360867 | Msa0411810:intron | 40.0% | |
| !! | TGCTTTGGATATGCAGCTTT+TGG | - | chr3_2:54360872-54360891 | Msa0411810:intron | 40.0% |
| TGACGTTGTCATATCAGTGT+TGG | + | chr3_2:54361205-54361224 | None:intergenic | 40.0% | |
| AACAGCAGAAGAGACATAGT+TGG | - | chr3_2:54361369-54361388 | Msa0411810:intron | 40.0% | |
| AGCTATGTGATTTCAACCAC+TGG | - | chr3_2:54361883-54361902 | Msa0411810:CDS | 40.0% | |
| ! | CCTAGAACTGAGTTGAAGTA+AGG | + | chr3_2:54361925-54361944 | None:intergenic | 40.0% |
| CCTTACTTCAACTCAGTTCT+AGG | - | chr3_2:54361922-54361941 | Msa0411810:CDS | 40.0% | |
| TACAGAAGAAAGTTGGAGCT+TGG | - | chr3_2:54362007-54362026 | Msa0411810:CDS | 40.0% | |
| ! | TTGGAGCTTGGACTAGAAAA+TGG | - | chr3_2:54362019-54362038 | Msa0411810:intron | 40.0% |
| TGCTTGCTTTCTTGTCACAA+TGG | - | chr3_2:54362065-54362084 | Msa0411810:intron | 40.0% | |
| TGCTTTCTTGTCACAATGGT+TGG | - | chr3_2:54362069-54362088 | Msa0411810:intron | 40.0% | |
| GTCACAATGGTTGGATTTGT+TGG | - | chr3_2:54362078-54362097 | Msa0411810:intron | 40.0% | |
| GATGGACATGCAAAAAGGAC+TGG | - | chr3_2:54359180-54359199 | Msa0411810:exon | 45.0% | |
| ! | TGGTTCCGGTGTTTTGTCTT+TGG | - | chr3_2:54359338-54359357 | Msa0411810:CDS | 45.0% |
| CCATGCCAAAGACAAAACAC+CGG | + | chr3_2:54359346-54359365 | None:intergenic | 45.0% | |
| ACTGCTCAACTAGGATGGAT+TGG | - | chr3_2:54359369-54359388 | Msa0411810:CDS | 45.0% | |
| GCACAACAAAGCAAGGTAAC+TGG | + | chr3_2:54359399-54359418 | None:intergenic | 45.0% | |
| ! | CTTTTCCCAGTTACCGAATC+AGG | + | chr3_2:54359471-54359490 | None:intergenic | 45.0% |
| !! | CTGATTCGGTAACTGGGAAA+AGG | - | chr3_2:54359469-54359488 | Msa0411810:CDS | 45.0% |
| TTACTTCAAACTGGTGGCTG+TGG | + | chr3_2:54359711-54359730 | None:intergenic | 45.0% | |
| CATACCGGATCTCCATAACA+TGG | - | chr3_2:54360317-54360336 | Msa0411810:intron | 45.0% | |
| CAAGCCATGTTATGGAGATC+CGG | + | chr3_2:54360324-54360343 | None:intergenic | 45.0% | |
| GGATCTCCATAACATGGCTT+GGG | - | chr3_2:54360323-54360342 | Msa0411810:intron | 45.0% | |
| ! | CCATAACATGGCTTGGGTTT+CGG | - | chr3_2:54360329-54360348 | Msa0411810:CDS | 45.0% |
| ACATACTCGTTCATCGGACT+AGG | - | chr3_2:54360375-54360394 | Msa0411810:CDS | 45.0% | |
| GACAATTATTGTGGGACGGA+TGG | + | chr3_2:54360452-54360471 | None:intergenic | 45.0% | |
| TGGTTAATCTTCCAGGCACT+TGG | - | chr3_2:54360611-54360630 | Msa0411810:intron | 45.0% | |
| !! | GCTTTTGGAGATTCTACACC+AGG | - | chr3_2:54360887-54360906 | Msa0411810:intron | 45.0% |
| ACACCAGGAAATCTCTTGAC+AGG | - | chr3_2:54360902-54360921 | Msa0411810:intron | 45.0% | |
| CACCAGGAAATCTCTTGACA+GGG | - | chr3_2:54360903-54360922 | Msa0411810:intron | 45.0% | |
| AACCCTGTCAAGAGATTTCC+TGG | + | chr3_2:54360908-54360927 | None:intergenic | 45.0% | |
| GGAAATCTCTTGACAGGGTT+TGG | - | chr3_2:54360908-54360927 | Msa0411810:intron | 45.0% | |
| TCAACCACAAAGCCACTGTT+GGG | + | chr3_2:54361793-54361812 | None:intergenic | 45.0% | |
| ATCAACCACAAAGCCACTGT+TGG | + | chr3_2:54361794-54361813 | None:intergenic | 45.0% | |
| ! | CCGGTGTTTTGTCTTTGGCA+TGG | - | chr3_2:54359343-54359362 | Msa0411810:CDS | 50.0% |
| !! | GCATGGAGTACTGCTCAACT+AGG | - | chr3_2:54359360-54359379 | Msa0411810:CDS | 50.0% |
| !! | GGAGTACTGCTCAACTAGGA+TGG | - | chr3_2:54359364-54359383 | Msa0411810:CDS | 50.0% |
| !! | GCTCAACTAGGATGGATTGG+AGG | - | chr3_2:54359372-54359391 | Msa0411810:CDS | 50.0% |
| GGCAACACTAGTCCCATACA+AGG | + | chr3_2:54359678-54359697 | None:intergenic | 50.0% | |
| CGGATCTCCATAACATGGCT+TGG | - | chr3_2:54360322-54360341 | Msa0411810:intron | 50.0% | |
| CCGAAACCCAAGCCATGTTA+TGG | + | chr3_2:54360332-54360351 | None:intergenic | 50.0% | |
| ! | TCGTTCATCGGACTAGGACT+TGG | - | chr3_2:54360381-54360400 | Msa0411810:CDS | 50.0% |
| TACCTATGCTGTGGCTGCTT+TGG | - | chr3_2:54360857-54360876 | Msa0411810:intron | 50.0% | |
| ATCCAAAGCAGCCACAGCAT+AGG | + | chr3_2:54360862-54360881 | None:intergenic | 50.0% | |
| ! | ATACCCCAACAGTGGCTTTG+TGG | - | chr3_2:54361786-54361805 | Msa0411810:intron | 50.0% |
| CAACCACAAAGCCACTGTTG+GGG | + | chr3_2:54361792-54361811 | None:intergenic | 50.0% | |
| GGTGGCTGTGGTAAGTACAC+AGG | + | chr3_2:54359699-54359718 | None:intergenic | 55.0% | |
| AGGCAACATCACCAAGTGCC+TGG | + | chr3_2:54360625-54360644 | None:intergenic | 55.0% | |
| TCATTTGGTCGGCGGCTATC+AGG | - | chr3_2:54360982-54361001 | Msa0411810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 54358928 | 54362404 | 54358928 | ID=Msa0411810;Name=Msa0411810 |
| chr3_2 | mRNA | 54358928 | 54362404 | 54358928 | ID=Msa0411810-mRNA-1;Parent=Msa0411810;Name=Msa0411810-mRNA-1;_AED=0.19;_eAED=0.19;_QI=198|0.85|0.87|1|0.85|0.75|8|234|472 |
| chr3_2 | exon | 54358928 | 54358979 | 54358928 | ID=Msa0411810-mRNA-1:exon:11048;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54359004 | 54359596 | 54359004 | ID=Msa0411810-mRNA-1:exon:11047;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54360329 | 54360556 | 54360329 | ID=Msa0411810-mRNA-1:exon:11046;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54360650 | 54360810 | 54360650 | ID=Msa0411810-mRNA-1:exon:11045;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54360912 | 54361126 | 54360912 | ID=Msa0411810-mRNA-1:exon:11044;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54361606 | 54361699 | 54361606 | ID=Msa0411810-mRNA-1:exon:11043;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54361804 | 54362037 | 54361804 | ID=Msa0411810-mRNA-1:exon:11042;Parent=Msa0411810-mRNA-1 |
| chr3_2 | exon | 54362131 | 54362404 | 54362131 | ID=Msa0411810-mRNA-1:exon:11041;Parent=Msa0411810-mRNA-1 |
| chr3_2 | five_prime_UTR | 54362207 | 54362404 | 54362207 | ID=Msa0411810-mRNA-1:five_prime_utr;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54362131 | 54362206 | 54362131 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54361804 | 54362037 | 54361804 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54361606 | 54361699 | 54361606 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54360912 | 54361126 | 54360912 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54360650 | 54360810 | 54360650 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54360329 | 54360556 | 54360329 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | CDS | 54359186 | 54359596 | 54359186 | ID=Msa0411810-mRNA-1:cds;Parent=Msa0411810-mRNA-1 |
| chr3_2 | three_prime_UTR | 54359004 | 54359185 | 54359004 | ID=Msa0411810-mRNA-1:three_prime_utr;Parent=Msa0411810-mRNA-1 |
| chr3_2 | three_prime_UTR | 54358928 | 54358979 | 54358928 | ID=Msa0411810-mRNA-1:three_prime_utr;Parent=Msa0411810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
