AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504010 MtrunA17_Chr3g0103691 98.140 484 6 1 1 484 1 481 0.0 980
Msa0504010 MtrunA17_Chr4g0011611 34.390 410 217 10 91 480 35 412 4.91e-73 236
Msa0504010 MtrunA17_Chr8g0379551 30.348 402 246 8 91 480 92 471 9.05e-53 185
Msa0504010 MtrunA17_Chr2g0315531 31.358 405 244 11 92 483 70 453 7.75e-51 179
Msa0504010 MtrunA17_Chr8g0359791 30.730 397 244 10 92 480 35 408 4.49e-50 176
Msa0504010 MtrunA17_Chr7g0230481 30.521 403 239 8 94 480 145 522 2.17e-45 166
Msa0504010 MtrunA17_Chr5g0432511 30.184 381 220 8 105 480 33 372 6.25e-43 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504010 AT5G58960.2 63.636 495 158 9 1 484 1 484 0.0 558
Msa0504010 AT5G58960.3 63.636 495 158 9 1 484 1 484 0.0 558
Msa0504010 AT5G58960.1 63.286 493 163 8 1 484 76 559 0.0 556
Msa0504010 AT2G45260.1 34.069 408 226 8 91 480 36 418 7.36e-74 239
Msa0504010 AT3G14870.3 31.931 404 238 10 91 480 82 462 3.13e-54 189
Msa0504010 AT3G14870.4 31.931 404 238 10 91 480 81 461 3.29e-54 189
Msa0504010 AT3G14870.5 31.931 404 238 10 91 480 81 461 3.29e-54 189
Msa0504010 AT3G14870.2 31.931 404 238 10 91 480 81 461 3.29e-54 189
Msa0504010 AT3G14870.1 31.931 404 238 10 91 480 85 465 3.78e-54 189
Msa0504010 AT1G53380.2 29.925 401 253 7 91 480 67 450 5.26e-51 180
Msa0504010 AT1G53380.4 29.925 401 253 7 91 480 67 450 5.26e-51 180
Msa0504010 AT1G53380.1 29.925 401 253 7 91 480 67 450 5.26e-51 180
Msa0504010 AT1G53380.3 29.925 401 253 7 91 480 67 450 5.26e-51 180
Msa0504010 AT1G53380.5 29.925 401 253 7 91 480 67 450 5.26e-51 180
Msa0504010 AT1G29300.1 33.416 404 218 12 91 480 85 451 7.32e-51 179
Msa0504010 AT3G60680.1 30.189 424 244 10 76 480 103 493 1.32e-50 180
Msa0504010 AT2G30380.1 32.741 394 198 12 95 480 76 410 1.53e-44 161
Msa0504010 AT4G34080.1 27.211 294 173 6 91 367 12 281 6.65e-33 126
Msa0504010 AT4G33320.1 26.667 300 178 7 91 372 12 287 3.99e-29 116
Msa0504010 AT5G12900.1 24.149 323 200 11 153 466 257 543 1.24e-11 67.4
Msa0504010 AT4G36100.1 44.068 59 33 0 91 149 12 70 7.86e-11 62.8

Find 141 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATGACTCTTCCATCTT+TGG 0.231397 3_4:+47894552 None:intergenic
ATGGATCCTGCTGAGCTTCT+TGG 0.231526 3_4:-47894636 Msa0504010:CDS
CTGTGTTGAGGGAGCGGTTT+CGG 0.247338 3_4:-47895815 Msa0504010:CDS
GTGCCAGCTGGTCAGGTTGT+AGG 0.282373 3_4:-47894318 Msa0504010:CDS
AGCTTAAATCCAGGACTAAC+TGG 0.284394 3_4:+47894291 None:intergenic
TCCTGGGGTGGTTTCCTGCT+TGG 0.285355 3_4:+47894502 None:intergenic
AAAGCAAATGGAAGCATTAA+TGG 0.287144 3_4:-47895967 Msa0504010:CDS
CGATCATGAAACTTTCTATA+TGG 0.321609 3_4:-47894736 Msa0504010:CDS
TTTGAAACCTTTCTCGTCAT+TGG 0.325126 3_4:+47896233 None:intergenic
TGGATCCTGCTGAGCTTCTT+GGG 0.330421 3_4:-47894635 Msa0504010:CDS
CCCTTAAAACGTTTAAGTTC+TGG 0.332741 3_4:+47894227 None:intergenic
TGGGCGGGTGCCAGCTGGTC+AGG 0.333732 3_4:-47894325 Msa0504010:CDS
CTTTGTCTAGCAGACTTAAC+AGG 0.336771 3_4:-47894185 Msa0504010:three_prime_UTR
TATACCATTATCACTAATTA+AGG 0.338977 3_4:+47894068 None:intergenic
TGCTGATGTGGCGGTGGTTA+CGG 0.339661 3_4:-47895853 Msa0504010:CDS
ATGAAGCAACCATACAGTTT+TGG 0.367698 3_4:+47894449 None:intergenic
GTTGTTGCTCTTTCTAATAA+TGG 0.378913 3_4:-47895633 Msa0504010:CDS
TCCGGTGGGCGGGTGCCAGC+TGG 0.383399 3_4:-47894330 Msa0504010:CDS
GGTGGTCGGAGAAGAGGTTT+TGG 0.384786 3_4:-47895771 Msa0504010:CDS
TGAGTTCCATCCACAGTATA+TGG 0.389849 3_4:-47894370 Msa0504010:CDS
GAAGAATGAAGTGAAGGTTA+AGG 0.391718 3_4:-47895694 Msa0504010:CDS
CTTTCTCTCTGTCTTTGACT+CGG 0.399353 3_4:-47896280 Msa0504010:five_prime_UTR
GACGAAGATGAGGATGAAAA+TGG 0.401789 3_4:-47896056 Msa0504010:CDS
GACATGAAGCGGTGACCCTT+TGG 0.409014 3_4:+47896195 None:intergenic
TTAGTCCTGGATTTAAGCTT+GGG 0.409214 3_4:-47894287 Msa0504010:CDS
TGAGTTACTGAACGAGTCAT+TGG 0.414607 3_4:-47896338 Msa0504010:five_prime_UTR
ATAGTTGTTTCAAATAGTTC+TGG 0.420555 3_4:+47894975 None:intergenic
TTCATTGTAAAACTCACTCC+TGG 0.421633 3_4:+47894485 None:intergenic
TGCCAGCTGGTCAGGTTGTA+GGG 0.430750 3_4:-47894317 Msa0504010:CDS
AGAACTATTTGAAACAACTA+TGG 0.436247 3_4:-47894973 Msa0504010:CDS
AAGATGGAAGAGTCATTGTT+TGG 0.439718 3_4:-47894549 Msa0504010:CDS
ATGGATCTGTTATAAAATCC+AGG 0.440196 3_4:-47894263 Msa0504010:CDS
AATTTGAAAGAGAAGCTTGA+AGG 0.440809 3_4:-47895657 Msa0504010:CDS
GTAGGGTTTCCAGTTAGTCC+TGG 0.454644 3_4:-47894300 Msa0504010:CDS
TCTAATGCACAATGCACATT+GGG 0.456485 3_4:-47894904 Msa0504010:CDS
CAATCACGGCGAAACTGATC+AGG 0.457004 3_4:+47894687 None:intergenic
TAGGGTTGGCCAAAACTGTA+TGG 0.457586 3_4:-47894458 Msa0504010:CDS
AAGAGGAAACTAGGAATTCA+AGG 0.457961 3_4:-47895576 Msa0504010:intron
GTTAGTCCTGGATTTAAGCT+TGG 0.463063 3_4:-47894288 Msa0504010:CDS
CTCTTAGATTGAGACCTCCC+TGG 0.464013 3_4:+47895594 None:intergenic
GCCTCAAATTGACTTGGTGG+AGG 0.466137 3_4:+47894405 None:intergenic
ATTGCATAACGAACACGTGC+TGG 0.469825 3_4:+47896390 None:intergenic
TGTGGCGTCGGTGAGGGAGG+TGG 0.470131 3_4:-47895748 Msa0504010:CDS
CCTCAAATTGACTTGGTGGA+GGG 0.471972 3_4:+47894406 None:intergenic
GAGGAAGTTGGCTGTGTTGA+GGG 0.474164 3_4:-47895826 Msa0504010:CDS
TGCCATTGTTCATCCAAAGA+TGG 0.479244 3_4:-47894565 Msa0504010:CDS
AGTTGGCTGTGTTGAGGGAG+CGG 0.479324 3_4:-47895821 Msa0504010:CDS
ATATCGAGGAAAATCTTTCA+AGG 0.484464 3_4:-47894762 Msa0504010:CDS
CGACTTGCCTCAAATTGACT+TGG 0.486173 3_4:+47894399 None:intergenic
AACCCTACAACCTGACCAGC+TGG 0.487016 3_4:+47894315 None:intergenic
GGCGTCGGTGAGGGAGGTGG+TGG 0.489339 3_4:-47895745 Msa0504010:CDS
AGGAATGGTGGTGGTAGGAA+AGG 0.489638 3_4:-47895792 Msa0504010:CDS
GCCGTATGAAGCGGTGGTGG+AGG 0.492246 3_4:-47895721 Msa0504010:CDS
CCTGGATTTAAGCTTGGGAA+TGG 0.494040 3_4:-47894282 Msa0504010:CDS
CCCTCCACCAAGTCAATTTG+AGG 0.496125 3_4:-47894406 Msa0504010:CDS
TCTCAATCTAAGAGGAAACT+AGG 0.498356 3_4:-47895585 Msa0504010:CDS
TCCAAGCAGGAAACCACCCC+AGG 0.499560 3_4:-47894503 Msa0504010:CDS
ACCAGCTGGCACCCGCCCAC+CGG 0.500037 3_4:+47894329 None:intergenic
CACTATCCATATACTGTGGA+TGG 0.500777 3_4:+47894364 None:intergenic
ATCTTTCTCACTGGAACAAG+TGG 0.503719 3_4:+47896164 None:intergenic
AGGGAGCGGTTTCGGAGGAA+TGG 0.503756 3_4:-47895807 Msa0504010:CDS
TCACTGGAACAAGTGGGTTG+AGG 0.510232 3_4:+47896171 None:intergenic
ATTCAACGAAGACAAAATGA+TGG 0.510894 3_4:-47896009 Msa0504010:CDS
AGGAAAGGTGGTCGGAGAAG+AGG 0.512189 3_4:-47895777 Msa0504010:CDS
GGCGCCGTATGAAGCGGTGG+TGG 0.513897 3_4:-47895724 Msa0504010:CDS
AAAATCCCAAGAAGCTCAGC+AGG 0.514756 3_4:+47894630 None:intergenic
TGGTGTGGCGTCGGTGAGGG+AGG 0.515757 3_4:-47895751 Msa0504010:CDS
GCTGTGTGAGTGTGACTCGC+TGG 0.518260 3_4:+47896418 None:intergenic
ACAAGAAGCACATTCACCTT+GGG 0.521549 3_4:-47895895 Msa0504010:CDS
TCTTCAACTATCTTTCTCAC+TGG 0.523579 3_4:+47896155 None:intergenic
CTCTAATGCACAATGCACAT+TGG 0.523721 3_4:-47894905 Msa0504010:CDS
TACAAGAAGCACATTCACCT+TGG 0.524354 3_4:-47895896 Msa0504010:CDS
AATGGTGGTGGTAGGAAAGG+TGG 0.530582 3_4:-47895789 Msa0504010:CDS
AAGAAGCTCAGCAGGATCCA+TGG 0.530759 3_4:+47894638 None:intergenic
GTTTCAAATAGTTCTGGTGT+AGG 0.534867 3_4:+47894981 None:intergenic
TCCTCCACCACCGCTTCATA+CGG 0.535354 3_4:+47895720 None:intergenic
GGTAGTGGTGAAAAGAAACC+AGG 0.538145 3_4:-47895612 Msa0504010:CDS
CTTGCCTCAAATTGACTTGG+TGG 0.539358 3_4:+47894402 None:intergenic
GGTGGTGGCGCCGTATGAAG+CGG 0.541331 3_4:-47895730 Msa0504010:CDS
AATGGAAGAAATCTTCGAAA+CGG 0.543142 3_4:-47895949 Msa0504010:CDS
AACTCAACCAATGACGAGAA+AGG 0.543640 3_4:-47896240 Msa0504010:exon
CATGAAACTTTCTATATGGA+TGG 0.544853 3_4:-47894732 Msa0504010:CDS
TAACGAACACGTGCTGGGTA+TGG 0.545405 3_4:+47896396 None:intergenic
GCTCTTTCTAATAATGGTAG+TGG 0.548165 3_4:-47895627 Msa0504010:CDS
CTCATCTTCTCTGCATCCCA+AGG 0.549218 3_4:+47895879 None:intergenic
CAGGGAGGTCTCAATCTAAG+AGG 0.553784 3_4:-47895593 Msa0504010:CDS
TCATTGTAAAACTCACTCCT+GGG 0.554453 3_4:+47894486 None:intergenic
ATACAAGGATATGAAGTCCA+TGG 0.554965 3_4:-47894655 Msa0504010:CDS
GGAGTTGAAGAATGAAGTGA+AGG 0.558888 3_4:-47895700 Msa0504010:CDS
CAGGATTGAGGAGGGATGAG+AGG 0.565482 3_4:+47894706 None:intergenic
CAGAAGAAGAAGAAACTGAG+TGG 0.569202 3_4:+47896313 None:intergenic
CCATTCCCAAGCTTAAATCC+AGG 0.570658 3_4:+47894282 None:intergenic
GGATGAAAATGGTAACCCAT+TGG 0.570775 3_4:-47896045 Msa0504010:CDS
AGATAAAAGCATAGATGTGA+AGG 0.572469 3_4:+47894926 None:intergenic
TATCGAGGAAAATCTTTCAA+GGG 0.572592 3_4:-47894761 Msa0504010:CDS
CGGTTTCGGAGGAATGGTGG+TGG 0.573316 3_4:-47895801 Msa0504010:CDS
ATTTCTCCGATCTGATCCAA+AGG 0.573461 3_4:-47896211 Msa0504010:CDS
GAGCGGTTTCGGAGGAATGG+TGG 0.573692 3_4:-47895804 Msa0504010:CDS
TGAGGAAGTTGGCTGTGTTG+AGG 0.574127 3_4:-47895827 Msa0504010:CDS
GAAGATGAGGGTTGCTGATG+TGG 0.577480 3_4:-47895865 Msa0504010:CDS
GGTTACGGAGCTGAGGAAGT+TGG 0.578372 3_4:-47895838 Msa0504010:CDS
CTTGGGATGCAGAGAAGATG+AGG 0.580380 3_4:-47895878 Msa0504010:CDS
TGTATTGAGTGAAGCAATCA+CGG 0.580907 3_4:+47894673 None:intergenic
GGCGAAACTGATCAGGATTG+AGG 0.583759 3_4:+47894694 None:intergenic
TGAAAATGGTAACCCATTGG+AGG 0.584072 3_4:-47896042 Msa0504010:CDS
TTCCATCTTTGGATGAACAA+TGG 0.584376 3_4:+47894563 None:intergenic
TTGCATAACGAACACGTGCT+GGG 0.584612 3_4:+47896391 None:intergenic
AATCAAGTGCATACTTAGCA+TGG 0.590253 3_4:+47894790 None:intergenic
CAGCACGGTCAAGTCCAAGC+AGG 0.591086 3_4:-47894516 Msa0504010:CDS
TTTCTCCGATCTGATCCAAA+GGG 0.592192 3_4:-47896210 Msa0504010:CDS
TTCAACGAAGACAAAATGAT+GGG 0.602829 3_4:-47896008 Msa0504010:CDS
GAGGGTTGCTGATGTGGCGG+TGG 0.603378 3_4:-47895859 Msa0504010:CDS
AGAAGAAGAAGAAACTGAGT+GGG 0.606035 3_4:+47896314 None:intergenic
AGTCAATTTGAGGCAAGTCG+TGG 0.609506 3_4:-47894396 Msa0504010:CDS
GGTGGCGCCGTATGAAGCGG+TGG 0.611619 3_4:-47895727 Msa0504010:CDS
TCTGGCTATCAAATATACCC+TGG 0.612671 3_4:+47894245 None:intergenic
TGTAAAACTCACTCCTGGGG+TGG 0.613108 3_4:+47894490 None:intergenic
TGATTGCTTCACTCAATACA+AGG 0.613182 3_4:-47894670 Msa0504010:CDS
TTCGGAGGAATGGTGGTGGT+AGG 0.614574 3_4:-47895797 Msa0504010:CDS
GTGGTGGTAGGAAAGGTGGT+CGG 0.614967 3_4:-47895785 Msa0504010:CDS
CACTTGATTCCTATATATCG+AGG 0.615079 3_4:-47894776 Msa0504010:CDS
TGGCGGTGGTTACGGAGCTG+AGG 0.623071 3_4:-47895845 Msa0504010:CDS
TGGATCTGTTATAAAATCCA+GGG 0.625379 3_4:-47894262 Msa0504010:CDS
TCCACAGTATATGGATAGTG+TGG 0.626365 3_4:-47894361 Msa0504010:CDS
AAACTGATCAGGATTGAGGA+GGG 0.627461 3_4:+47894698 None:intergenic
TGTTGAGGGAGCGGTTTCGG+AGG 0.627958 3_4:-47895812 Msa0504010:CDS
GAAACTGATCAGGATTGAGG+AGG 0.628809 3_4:+47894697 None:intergenic
TTTGGTAACTTAGAGCAGCA+CGG 0.643785 3_4:-47894531 Msa0504010:CDS
GGTGACCCTTTGGATCAGAT+CGG 0.655253 3_4:+47896205 None:intergenic
TCTTTCTCACTGGAACAAGT+GGG 0.658168 3_4:+47896165 None:intergenic
TTGGGATGCAGAGAAGATGA+GGG 0.665740 3_4:-47895877 Msa0504010:CDS
TGATGATGACGACGAAGATG+AGG 0.672461 3_4:-47896066 Msa0504010:CDS
TCTTTGGATGAACAATGGCA+AGG 0.673047 3_4:+47894568 None:intergenic
ACCACACTATCCATATACTG+TGG 0.681895 3_4:+47894360 None:intergenic
CATTGTAAAACTCACTCCTG+GGG 0.682589 3_4:+47894487 None:intergenic
TGGGTTGAGGAGACATGAAG+CGG 0.686959 3_4:+47896184 None:intergenic
GATGAGGGTTGCTGATGTGG+CGG 0.695122 3_4:-47895862 Msa0504010:CDS
GTAGTGGTGAAAAGAAACCA+GGG 0.716060 3_4:-47895611 Msa0504010:CDS
AGCATGGTGAGATGAGACAA+TGG 0.732639 3_4:+47894806 None:intergenic
GTGGTGAAAAGAAACCAGGG+AGG 0.821939 3_4:-47895608 Msa0504010:CDS
TCAATGTCAGAATCACCACG+AGG 0.828912 3_4:+47896442 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGGAATATAATTCTAAA+GGG - chr3_4:47895178-47895197 Msa0504010:intron 15.0%
!!! AGTTTTACAATGAATTTTTA+GGG - chr3_4:47896043-47896062 Msa0504010:CDS 15.0%
!!! TTTTGGAATATAATTCTAAA+GGG - chr3_4:47895178-47895197 Msa0504010:intron 15.0%
!!! AGTTTTACAATGAATTTTTA+GGG - chr3_4:47896043-47896062 Msa0504010:CDS 15.0%
!! AACAGCATTAAAAAAACAAA+GGG + chr3_4:47894983-47895002 None:intergenic 20.0%
!!! CTTTTGGAATATAATTCTAA+AGG - chr3_4:47895177-47895196 Msa0504010:intron 20.0%
!! AAATTCCAAATTAGTAACTT+TGG + chr3_4:47895228-47895247 None:intergenic 20.0%
!!! AAAGTTACTAATTTGGAATT+TGG - chr3_4:47895227-47895246 Msa0504010:intron 20.0%
!!! CATAAAGTTTCTTTTTGTTT+TGG - chr3_4:47895280-47895299 Msa0504010:intron 20.0%
!!! GAGTTTTACAATGAATTTTT+AGG - chr3_4:47896042-47896061 Msa0504010:CDS 20.0%
!! ATGTAATATGAAAAATCCTT+TGG - chr3_4:47896363-47896382 Msa0504010:five_prime_UTR 20.0%
!! AACAGCATTAAAAAAACAAA+GGG + chr3_4:47894983-47895002 None:intergenic 20.0%
!!! CTTTTGGAATATAATTCTAA+AGG - chr3_4:47895177-47895196 Msa0504010:intron 20.0%
!! AAATTCCAAATTAGTAACTT+TGG + chr3_4:47895228-47895247 None:intergenic 20.0%
!!! AAAGTTACTAATTTGGAATT+TGG - chr3_4:47895227-47895246 Msa0504010:intron 20.0%
!!! CATAAAGTTTCTTTTTGTTT+TGG - chr3_4:47895280-47895299 Msa0504010:intron 20.0%
!!! GAGTTTTACAATGAATTTTT+AGG - chr3_4:47896042-47896061 Msa0504010:CDS 20.0%
!! ATGTAATATGAAAAATCCTT+TGG - chr3_4:47896363-47896382 Msa0504010:five_prime_UTR 20.0%
! CAACAGCATTAAAAAAACAA+AGG + chr3_4:47894984-47895003 None:intergenic 25.0%
! AAAATGTTGTGTTTCATGTT+TGG - chr3_4:47895012-47895031 Msa0504010:intron 25.0%
!!! TGCTTATTTGATTTAGCTTT+TGG - chr3_4:47895161-47895180 Msa0504010:intron 25.0%
! ACAATCCAAAGTTACTAATT+TGG - chr3_4:47895220-47895239 Msa0504010:intron 25.0%
!! CTTTTGAATATAAACCTCAA+GGG - chr3_4:47895384-47895403 Msa0504010:intron 25.0%
!! TTTTGAATATAAACCTCAAG+GGG - chr3_4:47895385-47895404 Msa0504010:intron 25.0%
! CTTCAAGAAACTATTAACTT+TGG + chr3_4:47895436-47895455 None:intergenic 25.0%
!! ATAGTTGTTTCAAATAGTTC+TGG + chr3_4:47895547-47895566 None:intergenic 25.0%
!! AGAACTATTTGAAACAACTA+TGG - chr3_4:47895546-47895565 Msa0504010:intron 25.0%
!! AAAGATTTTCCTCGATATAT+AGG + chr3_4:47895755-47895774 None:intergenic 25.0%
!!! TTACAATGAATTTTTAGGGT+TGG - chr3_4:47896047-47896066 Msa0504010:CDS 25.0%
! AAAAACAATAATCTAGCCAA+AGG + chr3_4:47896382-47896401 None:intergenic 25.0%
!!! TTGGCTAGATTATTGTTTTT+CGG - chr3_4:47896382-47896401 Msa0504010:five_prime_UTR 25.0%
! CAACAGCATTAAAAAAACAA+AGG + chr3_4:47894984-47895003 None:intergenic 25.0%
! AAAATGTTGTGTTTCATGTT+TGG - chr3_4:47895012-47895031 Msa0504010:intron 25.0%
!!! TGCTTATTTGATTTAGCTTT+TGG - chr3_4:47895161-47895180 Msa0504010:intron 25.0%
! ACAATCCAAAGTTACTAATT+TGG - chr3_4:47895220-47895239 Msa0504010:intron 25.0%
!! CTTTTGAATATAAACCTCAA+GGG - chr3_4:47895384-47895403 Msa0504010:intron 25.0%
!! TTTTGAATATAAACCTCAAG+GGG - chr3_4:47895385-47895404 Msa0504010:intron 25.0%
! CTTCAAGAAACTATTAACTT+TGG + chr3_4:47895436-47895455 None:intergenic 25.0%
!! ATAGTTGTTTCAAATAGTTC+TGG + chr3_4:47895547-47895566 None:intergenic 25.0%
!! AGAACTATTTGAAACAACTA+TGG - chr3_4:47895546-47895565 Msa0504010:intron 25.0%
!! AAAGATTTTCCTCGATATAT+AGG + chr3_4:47895755-47895774 None:intergenic 25.0%
!!! TTACAATGAATTTTTAGGGT+TGG - chr3_4:47896047-47896066 Msa0504010:CDS 25.0%
! AAAAACAATAATCTAGCCAA+AGG + chr3_4:47896382-47896401 None:intergenic 25.0%
!!! TTGGCTAGATTATTGTTTTT+CGG - chr3_4:47896382-47896401 Msa0504010:five_prime_UTR 25.0%
ATTCAACGAAGACAAAATGA+TGG - chr3_4:47894510-47894529 Msa0504010:CDS 30.0%
TTCAACGAAGACAAAATGAT+GGG - chr3_4:47894511-47894530 Msa0504010:CDS 30.0%
!! GATTTTGAAGGTAAAGCAAA+TGG - chr3_4:47894540-47894559 Msa0504010:CDS 30.0%
!! AAAGCAAATGGAAGCATTAA+TGG - chr3_4:47894552-47894571 Msa0504010:CDS 30.0%
AATGGAAGAAATCTTCGAAA+CGG - chr3_4:47894570-47894589 Msa0504010:CDS 30.0%
AATTTGAAAGAGAAGCTTGA+AGG - chr3_4:47894862-47894881 Msa0504010:CDS 30.0%
GTTGTTGCTCTTTCTAATAA+TGG - chr3_4:47894886-47894905 Msa0504010:CDS 30.0%
! TGTGTTTCATGTTTGGAATT+TGG - chr3_4:47895019-47895038 Msa0504010:intron 30.0%
! TTCTATGCTTGTGCATATTT+TGG - chr3_4:47895356-47895375 Msa0504010:intron 30.0%
! GCTTTTGAATATAAACCTCA+AGG - chr3_4:47895383-47895402 Msa0504010:intron 30.0%
CTTGAAGATGAAATGAATTG+AGG - chr3_4:47895449-47895468 Msa0504010:intron 30.0%
! AGATAAAAGCATAGATGTGA+AGG + chr3_4:47895596-47895615 None:intergenic 30.0%
ATATCGAGGAAAATCTTTCA+AGG - chr3_4:47895757-47895776 Msa0504010:CDS 30.0%
TATCGAGGAAAATCTTTCAA+GGG - chr3_4:47895758-47895777 Msa0504010:CDS 30.0%
CGATCATGAAACTTTCTATA+TGG - chr3_4:47895783-47895802 Msa0504010:CDS 30.0%
CATGAAACTTTCTATATGGA+TGG - chr3_4:47895787-47895806 Msa0504010:CDS 30.0%
!! ATTTTACCAACATGTCACTT+TGG - chr3_4:47895907-47895926 Msa0504010:CDS 30.0%
! AATTTTCCAAAGTGACATGT+TGG + chr3_4:47895916-47895935 None:intergenic 30.0%
ATGGATCTGTTATAAAATCC+AGG - chr3_4:47896256-47896275 Msa0504010:five_prime_UTR 30.0%
TGGATCTGTTATAAAATCCA+GGG - chr3_4:47896257-47896276 Msa0504010:five_prime_UTR 30.0%
! CCAGAACTTAAACGTTTTAA+GGG - chr3_4:47896292-47896311 Msa0504010:five_prime_UTR 30.0%
ATTCAACGAAGACAAAATGA+TGG - chr3_4:47894510-47894529 Msa0504010:CDS 30.0%
TTCAACGAAGACAAAATGAT+GGG - chr3_4:47894511-47894530 Msa0504010:CDS 30.0%
!! GATTTTGAAGGTAAAGCAAA+TGG - chr3_4:47894540-47894559 Msa0504010:CDS 30.0%
!! AAAGCAAATGGAAGCATTAA+TGG - chr3_4:47894552-47894571 Msa0504010:CDS 30.0%
AATGGAAGAAATCTTCGAAA+CGG - chr3_4:47894570-47894589 Msa0504010:CDS 30.0%
AATTTGAAAGAGAAGCTTGA+AGG - chr3_4:47894862-47894881 Msa0504010:CDS 30.0%
GTTGTTGCTCTTTCTAATAA+TGG - chr3_4:47894886-47894905 Msa0504010:CDS 30.0%
! TGTGTTTCATGTTTGGAATT+TGG - chr3_4:47895019-47895038 Msa0504010:intron 30.0%
! TTCTATGCTTGTGCATATTT+TGG - chr3_4:47895356-47895375 Msa0504010:intron 30.0%
! GCTTTTGAATATAAACCTCA+AGG - chr3_4:47895383-47895402 Msa0504010:intron 30.0%
CTTGAAGATGAAATGAATTG+AGG - chr3_4:47895449-47895468 Msa0504010:intron 30.0%
! AGATAAAAGCATAGATGTGA+AGG + chr3_4:47895596-47895615 None:intergenic 30.0%
ATATCGAGGAAAATCTTTCA+AGG - chr3_4:47895757-47895776 Msa0504010:CDS 30.0%
TATCGAGGAAAATCTTTCAA+GGG - chr3_4:47895758-47895777 Msa0504010:CDS 30.0%
CGATCATGAAACTTTCTATA+TGG - chr3_4:47895783-47895802 Msa0504010:CDS 30.0%
CATGAAACTTTCTATATGGA+TGG - chr3_4:47895787-47895806 Msa0504010:CDS 30.0%
!! ATTTTACCAACATGTCACTT+TGG - chr3_4:47895907-47895926 Msa0504010:CDS 30.0%
! AATTTTCCAAAGTGACATGT+TGG + chr3_4:47895916-47895935 None:intergenic 30.0%
ATGGATCTGTTATAAAATCC+AGG - chr3_4:47896256-47896275 Msa0504010:five_prime_UTR 30.0%
TGGATCTGTTATAAAATCCA+GGG - chr3_4:47896257-47896276 Msa0504010:five_prime_UTR 30.0%
! CCAGAACTTAAACGTTTTAA+GGG - chr3_4:47896292-47896311 Msa0504010:five_prime_UTR 30.0%
AGAAGAAGAAGAAACTGAGT+GGG + chr3_4:47894208-47894227 None:intergenic 35.0%
! TTTGAAACCTTTCTCGTCAT+TGG + chr3_4:47894289-47894308 None:intergenic 35.0%
TCTTCAACTATCTTTCTCAC+TGG + chr3_4:47894367-47894386 None:intergenic 35.0%
!! CTGTTTTCTTCTGATTCGTA+GGG + chr3_4:47894397-47894416 None:intergenic 35.0%
!! TCTGTTTTCTTCTGATTCGT+AGG + chr3_4:47894398-47894417 None:intergenic 35.0%
!! ATTCGTCATTTTCCTCCAAT+GGG + chr3_4:47894492-47894511 None:intergenic 35.0%
!! AATTCGTCATTTTCCTCCAA+TGG + chr3_4:47894493-47894512 None:intergenic 35.0%
! GATGGGTATGAAGATTTTGA+AGG - chr3_4:47894528-47894547 Msa0504010:CDS 35.0%
GAAGAATGAAGTGAAGGTTA+AGG - chr3_4:47894825-47894844 Msa0504010:CDS 35.0%
GCTCTTTCTAATAATGGTAG+TGG - chr3_4:47894892-47894911 Msa0504010:CDS 35.0%
TCTCAATCTAAGAGGAAACT+AGG - chr3_4:47894934-47894953 Msa0504010:CDS 35.0%
AAGAGGAAACTAGGAATTCA+AGG - chr3_4:47894943-47894962 Msa0504010:CDS 35.0%
!! GTTTCAAATAGTTCTGGTGT+AGG + chr3_4:47895541-47895560 None:intergenic 35.0%
TCTAATGCACAATGCACATT+GGG - chr3_4:47895615-47895634 Msa0504010:CDS 35.0%
AATCAAGTGCATACTTAGCA+TGG + chr3_4:47895732-47895751 None:intergenic 35.0%
CACTTGATTCCTATATATCG+AGG - chr3_4:47895743-47895762 Msa0504010:CDS 35.0%
TGTATTGAGTGAAGCAATCA+CGG + chr3_4:47895849-47895868 None:intergenic 35.0%
TGATTGCTTCACTCAATACA+AGG - chr3_4:47895849-47895868 Msa0504010:CDS 35.0%
ATACAAGGATATGAAGTCCA+TGG - chr3_4:47895864-47895883 Msa0504010:CDS 35.0%
TTCCATCTTTGGATGAACAA+TGG + chr3_4:47895959-47895978 None:intergenic 35.0%
AACAATGACTCTTCCATCTT+TGG + chr3_4:47895970-47895989 None:intergenic 35.0%
AAGATGGAAGAGTCATTGTT+TGG - chr3_4:47895970-47895989 Msa0504010:CDS 35.0%
TCATTGTAAAACTCACTCCT+GGG + chr3_4:47896036-47896055 None:intergenic 35.0%
TTCATTGTAAAACTCACTCC+TGG + chr3_4:47896037-47896056 None:intergenic 35.0%
! ATGAAGCAACCATACAGTTT+TGG + chr3_4:47896073-47896092 None:intergenic 35.0%
! GATAGTGTGGTGAAATTTTC+CGG - chr3_4:47896171-47896190 Msa0504010:CDS 35.0%
TTAGTCCTGGATTTAAGCTT+GGG - chr3_4:47896232-47896251 Msa0504010:CDS 35.0%
! GCCAGAACTTAAACGTTTTA+AGG - chr3_4:47896291-47896310 Msa0504010:five_prime_UTR 35.0%
! CCCTTAAAACGTTTAAGTTC+TGG + chr3_4:47896295-47896314 None:intergenic 35.0%
AGAAGAAGAAGAAACTGAGT+GGG + chr3_4:47894208-47894227 None:intergenic 35.0%
! TTTGAAACCTTTCTCGTCAT+TGG + chr3_4:47894289-47894308 None:intergenic 35.0%
TCTTCAACTATCTTTCTCAC+TGG + chr3_4:47894367-47894386 None:intergenic 35.0%
!! CTGTTTTCTTCTGATTCGTA+GGG + chr3_4:47894397-47894416 None:intergenic 35.0%
!! TCTGTTTTCTTCTGATTCGT+AGG + chr3_4:47894398-47894417 None:intergenic 35.0%
!! ATTCGTCATTTTCCTCCAAT+GGG + chr3_4:47894492-47894511 None:intergenic 35.0%
!! AATTCGTCATTTTCCTCCAA+TGG + chr3_4:47894493-47894512 None:intergenic 35.0%
! GATGGGTATGAAGATTTTGA+AGG - chr3_4:47894528-47894547 Msa0504010:CDS 35.0%
GAAGAATGAAGTGAAGGTTA+AGG - chr3_4:47894825-47894844 Msa0504010:CDS 35.0%
GCTCTTTCTAATAATGGTAG+TGG - chr3_4:47894892-47894911 Msa0504010:CDS 35.0%
TCTCAATCTAAGAGGAAACT+AGG - chr3_4:47894934-47894953 Msa0504010:CDS 35.0%
AAGAGGAAACTAGGAATTCA+AGG - chr3_4:47894943-47894962 Msa0504010:CDS 35.0%
!! GTTTCAAATAGTTCTGGTGT+AGG + chr3_4:47895541-47895560 None:intergenic 35.0%
TCTAATGCACAATGCACATT+GGG - chr3_4:47895615-47895634 Msa0504010:CDS 35.0%
AATCAAGTGCATACTTAGCA+TGG + chr3_4:47895732-47895751 None:intergenic 35.0%
CACTTGATTCCTATATATCG+AGG - chr3_4:47895743-47895762 Msa0504010:CDS 35.0%
TGTATTGAGTGAAGCAATCA+CGG + chr3_4:47895849-47895868 None:intergenic 35.0%
TGATTGCTTCACTCAATACA+AGG - chr3_4:47895849-47895868 Msa0504010:CDS 35.0%
ATACAAGGATATGAAGTCCA+TGG - chr3_4:47895864-47895883 Msa0504010:CDS 35.0%
TTCCATCTTTGGATGAACAA+TGG + chr3_4:47895959-47895978 None:intergenic 35.0%
AACAATGACTCTTCCATCTT+TGG + chr3_4:47895970-47895989 None:intergenic 35.0%
AAGATGGAAGAGTCATTGTT+TGG - chr3_4:47895970-47895989 Msa0504010:CDS 35.0%
TCATTGTAAAACTCACTCCT+GGG + chr3_4:47896036-47896055 None:intergenic 35.0%
TTCATTGTAAAACTCACTCC+TGG + chr3_4:47896037-47896056 None:intergenic 35.0%
! ATGAAGCAACCATACAGTTT+TGG + chr3_4:47896073-47896092 None:intergenic 35.0%
! GATAGTGTGGTGAAATTTTC+CGG - chr3_4:47896171-47896190 Msa0504010:CDS 35.0%
TTAGTCCTGGATTTAAGCTT+GGG - chr3_4:47896232-47896251 Msa0504010:CDS 35.0%
! GCCAGAACTTAAACGTTTTA+AGG - chr3_4:47896291-47896310 Msa0504010:five_prime_UTR 35.0%
! CCCTTAAAACGTTTAAGTTC+TGG + chr3_4:47896295-47896314 None:intergenic 35.0%
TGAGTTACTGAACGAGTCAT+TGG - chr3_4:47894181-47894200 Msa0504010:three_prime_UTR 40.0%
CAGAAGAAGAAGAAACTGAG+TGG + chr3_4:47894209-47894228 None:intergenic 40.0%
CTTTCTCTCTGTCTTTGACT+CGG - chr3_4:47894239-47894258 Msa0504010:CDS 40.0%
AACTCAACCAATGACGAGAA+AGG - chr3_4:47894279-47894298 Msa0504010:CDS 40.0%
ATTTCTCCGATCTGATCCAA+AGG - chr3_4:47894308-47894327 Msa0504010:CDS 40.0%
TTTCTCCGATCTGATCCAAA+GGG - chr3_4:47894309-47894328 Msa0504010:CDS 40.0%
TCTTTCTCACTGGAACAAGT+GGG + chr3_4:47894357-47894376 None:intergenic 40.0%
ATCTTTCTCACTGGAACAAG+TGG + chr3_4:47894358-47894377 None:intergenic 40.0%
GACGAAGATGAGGATGAAAA+TGG - chr3_4:47894463-47894482 Msa0504010:CDS 40.0%
GGATGAAAATGGTAACCCAT+TGG - chr3_4:47894474-47894493 Msa0504010:CDS 40.0%
TGAAAATGGTAACCCATTGG+AGG - chr3_4:47894477-47894496 Msa0504010:CDS 40.0%
! TACAAGAAGCACATTCACCT+TGG - chr3_4:47894623-47894642 Msa0504010:CDS 40.0%
! ACAAGAAGCACATTCACCTT+GGG - chr3_4:47894624-47894643 Msa0504010:CDS 40.0%
GGAGTTGAAGAATGAAGTGA+AGG - chr3_4:47894819-47894838 Msa0504010:CDS 40.0%
GTAGTGGTGAAAAGAAACCA+GGG - chr3_4:47894908-47894927 Msa0504010:CDS 40.0%
CTCTAATGCACAATGCACAT+TGG - chr3_4:47895614-47895633 Msa0504010:CDS 40.0%
AAACTGATCAGGATTGAGGA+GGG + chr3_4:47895824-47895843 None:intergenic 40.0%
TCTTTGGATGAACAATGGCA+AGG + chr3_4:47895954-47895973 None:intergenic 40.0%
TGCCATTGTTCATCCAAAGA+TGG - chr3_4:47895954-47895973 Msa0504010:CDS 40.0%
! TTTGGTAACTTAGAGCAGCA+CGG - chr3_4:47895988-47896007 Msa0504010:CDS 40.0%
CATTGTAAAACTCACTCCTG+GGG + chr3_4:47896035-47896054 None:intergenic 40.0%
TGAGTTCCATCCACAGTATA+TGG - chr3_4:47896149-47896168 Msa0504010:CDS 40.0%
CACTATCCATATACTGTGGA+TGG + chr3_4:47896158-47896177 None:intergenic 40.0%
TCCACAGTATATGGATAGTG+TGG - chr3_4:47896158-47896177 Msa0504010:CDS 40.0%
ACCACACTATCCATATACTG+TGG + chr3_4:47896162-47896181 None:intergenic 40.0%
AGCTTAAATCCAGGACTAAC+TGG + chr3_4:47896231-47896250 None:intergenic 40.0%
GTTAGTCCTGGATTTAAGCT+TGG - chr3_4:47896231-47896250 Msa0504010:CDS 40.0%
TCTGGCTATCAAATATACCC+TGG + chr3_4:47896277-47896296 None:intergenic 40.0%
CTTTGTCTAGCAGACTTAAC+AGG - chr3_4:47896334-47896353 Msa0504010:five_prime_UTR 40.0%
TGAGTTACTGAACGAGTCAT+TGG - chr3_4:47894181-47894200 Msa0504010:three_prime_UTR 40.0%
CAGAAGAAGAAGAAACTGAG+TGG + chr3_4:47894209-47894228 None:intergenic 40.0%
CTTTCTCTCTGTCTTTGACT+CGG - chr3_4:47894239-47894258 Msa0504010:CDS 40.0%
AACTCAACCAATGACGAGAA+AGG - chr3_4:47894279-47894298 Msa0504010:CDS 40.0%
ATTTCTCCGATCTGATCCAA+AGG - chr3_4:47894308-47894327 Msa0504010:CDS 40.0%
TTTCTCCGATCTGATCCAAA+GGG - chr3_4:47894309-47894328 Msa0504010:CDS 40.0%
TCTTTCTCACTGGAACAAGT+GGG + chr3_4:47894357-47894376 None:intergenic 40.0%
ATCTTTCTCACTGGAACAAG+TGG + chr3_4:47894358-47894377 None:intergenic 40.0%
GACGAAGATGAGGATGAAAA+TGG - chr3_4:47894463-47894482 Msa0504010:CDS 40.0%
GGATGAAAATGGTAACCCAT+TGG - chr3_4:47894474-47894493 Msa0504010:CDS 40.0%
TGAAAATGGTAACCCATTGG+AGG - chr3_4:47894477-47894496 Msa0504010:CDS 40.0%
! TACAAGAAGCACATTCACCT+TGG - chr3_4:47894623-47894642 Msa0504010:CDS 40.0%
! ACAAGAAGCACATTCACCTT+GGG - chr3_4:47894624-47894643 Msa0504010:CDS 40.0%
GGAGTTGAAGAATGAAGTGA+AGG - chr3_4:47894819-47894838 Msa0504010:CDS 40.0%
GTAGTGGTGAAAAGAAACCA+GGG - chr3_4:47894908-47894927 Msa0504010:CDS 40.0%
CTCTAATGCACAATGCACAT+TGG - chr3_4:47895614-47895633 Msa0504010:CDS 40.0%
AAACTGATCAGGATTGAGGA+GGG + chr3_4:47895824-47895843 None:intergenic 40.0%
TCTTTGGATGAACAATGGCA+AGG + chr3_4:47895954-47895973 None:intergenic 40.0%
TGCCATTGTTCATCCAAAGA+TGG - chr3_4:47895954-47895973 Msa0504010:CDS 40.0%
! TTTGGTAACTTAGAGCAGCA+CGG - chr3_4:47895988-47896007 Msa0504010:CDS 40.0%
CATTGTAAAACTCACTCCTG+GGG + chr3_4:47896035-47896054 None:intergenic 40.0%
TGAGTTCCATCCACAGTATA+TGG - chr3_4:47896149-47896168 Msa0504010:CDS 40.0%
CACTATCCATATACTGTGGA+TGG + chr3_4:47896158-47896177 None:intergenic 40.0%
TCCACAGTATATGGATAGTG+TGG - chr3_4:47896158-47896177 Msa0504010:CDS 40.0%
ACCACACTATCCATATACTG+TGG + chr3_4:47896162-47896181 None:intergenic 40.0%
AGCTTAAATCCAGGACTAAC+TGG + chr3_4:47896231-47896250 None:intergenic 40.0%
GTTAGTCCTGGATTTAAGCT+TGG - chr3_4:47896231-47896250 Msa0504010:CDS 40.0%
TCTGGCTATCAAATATACCC+TGG + chr3_4:47896277-47896296 None:intergenic 40.0%
CTTTGTCTAGCAGACTTAAC+AGG - chr3_4:47896334-47896353 Msa0504010:five_prime_UTR 40.0%
TTGCATAACGAACACGTGCT+GGG + chr3_4:47894131-47894150 None:intergenic 45.0%
ATTGCATAACGAACACGTGC+TGG + chr3_4:47894132-47894151 None:intergenic 45.0%
! TGATGATGACGACGAAGATG+AGG - chr3_4:47894453-47894472 Msa0504010:CDS 45.0%
TTGGGATGCAGAGAAGATGA+GGG - chr3_4:47894642-47894661 Msa0504010:CDS 45.0%
! GGTAGTGGTGAAAAGAAACC+AGG - chr3_4:47894907-47894926 Msa0504010:CDS 45.0%
TCAGCTTATGAAACCCCTTG+AGG + chr3_4:47895401-47895420 None:intergenic 45.0%
AGCATGGTGAGATGAGACAA+TGG + chr3_4:47895716-47895735 None:intergenic 45.0%
GAAACTGATCAGGATTGAGG+AGG + chr3_4:47895825-47895844 None:intergenic 45.0%
AAAATCCCAAGAAGCTCAGC+AGG + chr3_4:47895892-47895911 None:intergenic 45.0%
!! TAGGGTTGGCCAAAACTGTA+TGG - chr3_4:47896061-47896080 Msa0504010:CDS 45.0%
!! CCTCAAATTGACTTGGTGGA+GGG + chr3_4:47896116-47896135 None:intergenic 45.0%
!! CTTGCCTCAAATTGACTTGG+TGG + chr3_4:47896120-47896139 None:intergenic 45.0%
CGACTTGCCTCAAATTGACT+TGG + chr3_4:47896123-47896142 None:intergenic 45.0%
! AGTCAATTTGAGGCAAGTCG+TGG - chr3_4:47896123-47896142 Msa0504010:CDS 45.0%
! AGTGTGGTGAAATTTTCCGG+TGG - chr3_4:47896174-47896193 Msa0504010:CDS 45.0%
! GTGTGGTGAAATTTTCCGGT+GGG - chr3_4:47896175-47896194 Msa0504010:CDS 45.0%
CCATTCCCAAGCTTAAATCC+AGG + chr3_4:47896240-47896259 None:intergenic 45.0%
CCTGGATTTAAGCTTGGGAA+TGG - chr3_4:47896237-47896256 Msa0504010:exon 45.0%
TTGCATAACGAACACGTGCT+GGG + chr3_4:47894131-47894150 None:intergenic 45.0%
ATTGCATAACGAACACGTGC+TGG + chr3_4:47894132-47894151 None:intergenic 45.0%
! TGATGATGACGACGAAGATG+AGG - chr3_4:47894453-47894472 Msa0504010:CDS 45.0%
TTGGGATGCAGAGAAGATGA+GGG - chr3_4:47894642-47894661 Msa0504010:CDS 45.0%
! GGTAGTGGTGAAAAGAAACC+AGG - chr3_4:47894907-47894926 Msa0504010:CDS 45.0%
TCAGCTTATGAAACCCCTTG+AGG + chr3_4:47895401-47895420 None:intergenic 45.0%
AGCATGGTGAGATGAGACAA+TGG + chr3_4:47895716-47895735 None:intergenic 45.0%
GAAACTGATCAGGATTGAGG+AGG + chr3_4:47895825-47895844 None:intergenic 45.0%
AAAATCCCAAGAAGCTCAGC+AGG + chr3_4:47895892-47895911 None:intergenic 45.0%
!! TAGGGTTGGCCAAAACTGTA+TGG - chr3_4:47896061-47896080 Msa0504010:CDS 45.0%
!! CCTCAAATTGACTTGGTGGA+GGG + chr3_4:47896116-47896135 None:intergenic 45.0%
!! CTTGCCTCAAATTGACTTGG+TGG + chr3_4:47896120-47896139 None:intergenic 45.0%
CGACTTGCCTCAAATTGACT+TGG + chr3_4:47896123-47896142 None:intergenic 45.0%
! AGTCAATTTGAGGCAAGTCG+TGG - chr3_4:47896123-47896142 Msa0504010:CDS 45.0%
! AGTGTGGTGAAATTTTCCGG+TGG - chr3_4:47896174-47896193 Msa0504010:CDS 45.0%
! GTGTGGTGAAATTTTCCGGT+GGG - chr3_4:47896175-47896194 Msa0504010:CDS 45.0%
CCATTCCCAAGCTTAAATCC+AGG + chr3_4:47896240-47896259 None:intergenic 45.0%
CCTGGATTTAAGCTTGGGAA+TGG - chr3_4:47896237-47896256 Msa0504010:exon 45.0%
TAACGAACACGTGCTGGGTA+TGG + chr3_4:47894126-47894145 None:intergenic 50.0%
GGTGACCCTTTGGATCAGAT+CGG + chr3_4:47894317-47894336 None:intergenic 50.0%
! TGGGTTGAGGAGACATGAAG+CGG + chr3_4:47894338-47894357 None:intergenic 50.0%
!! TCACTGGAACAAGTGGGTTG+AGG + chr3_4:47894351-47894370 None:intergenic 50.0%
CTCATCTTCTCTGCATCCCA+AGG + chr3_4:47894643-47894662 None:intergenic 50.0%
CTTGGGATGCAGAGAAGATG+AGG - chr3_4:47894641-47894660 Msa0504010:CDS 50.0%
GAAGATGAGGGTTGCTGATG+TGG - chr3_4:47894654-47894673 Msa0504010:CDS 50.0%
TGAGGAAGTTGGCTGTGTTG+AGG - chr3_4:47894692-47894711 Msa0504010:CDS 50.0%
GAGGAAGTTGGCTGTGTTGA+GGG - chr3_4:47894693-47894712 Msa0504010:CDS 50.0%
!! AGGAATGGTGGTGGTAGGAA+AGG - chr3_4:47894727-47894746 Msa0504010:CDS 50.0%
!! AATGGTGGTGGTAGGAAAGG+TGG - chr3_4:47894730-47894749 Msa0504010:CDS 50.0%
!! TCGGAGAAGAGGTTTTGGTG+TGG - chr3_4:47894753-47894772 Msa0504010:CDS 50.0%
!! AAGAGGTTTTGGTGTGGCGT+CGG - chr3_4:47894759-47894778 Msa0504010:CDS 50.0%
GTGGTGAAAAGAAACCAGGG+AGG - chr3_4:47894911-47894930 Msa0504010:CDS 50.0%
CTCTTAGATTGAGACCTCCC+TGG + chr3_4:47894928-47894947 None:intergenic 50.0%
CAGGGAGGTCTCAATCTAAG+AGG - chr3_4:47894926-47894945 Msa0504010:CDS 50.0%
GGCGAAACTGATCAGGATTG+AGG + chr3_4:47895828-47895847 None:intergenic 50.0%
CAATCACGGCGAAACTGATC+AGG + chr3_4:47895835-47895854 None:intergenic 50.0%
AAGAAGCTCAGCAGGATCCA+TGG + chr3_4:47895884-47895903 None:intergenic 50.0%
ATGGATCCTGCTGAGCTTCT+TGG - chr3_4:47895883-47895902 Msa0504010:CDS 50.0%
TGGATCCTGCTGAGCTTCTT+GGG - chr3_4:47895884-47895903 Msa0504010:CDS 50.0%
TGTAAAACTCACTCCTGGGG+TGG + chr3_4:47896032-47896051 None:intergenic 50.0%
CCCTCCACCAAGTCAATTTG+AGG - chr3_4:47896113-47896132 Msa0504010:CDS 50.0%
!! GCCTCAAATTGACTTGGTGG+AGG + chr3_4:47896117-47896136 None:intergenic 50.0%
! TGGTGAAATTTTCCGGTGGG+CGG - chr3_4:47896178-47896197 Msa0504010:CDS 50.0%
GTAGGGTTTCCAGTTAGTCC+TGG - chr3_4:47896219-47896238 Msa0504010:CDS 50.0%
TAACGAACACGTGCTGGGTA+TGG + chr3_4:47894126-47894145 None:intergenic 50.0%
GGTGACCCTTTGGATCAGAT+CGG + chr3_4:47894317-47894336 None:intergenic 50.0%
! TGGGTTGAGGAGACATGAAG+CGG + chr3_4:47894338-47894357 None:intergenic 50.0%
!! TCACTGGAACAAGTGGGTTG+AGG + chr3_4:47894351-47894370 None:intergenic 50.0%
CTCATCTTCTCTGCATCCCA+AGG + chr3_4:47894643-47894662 None:intergenic 50.0%
CTTGGGATGCAGAGAAGATG+AGG - chr3_4:47894641-47894660 Msa0504010:CDS 50.0%
GAAGATGAGGGTTGCTGATG+TGG - chr3_4:47894654-47894673 Msa0504010:CDS 50.0%
TGAGGAAGTTGGCTGTGTTG+AGG - chr3_4:47894692-47894711 Msa0504010:CDS 50.0%
GAGGAAGTTGGCTGTGTTGA+GGG - chr3_4:47894693-47894712 Msa0504010:CDS 50.0%
!! AGGAATGGTGGTGGTAGGAA+AGG - chr3_4:47894727-47894746 Msa0504010:CDS 50.0%
!! AATGGTGGTGGTAGGAAAGG+TGG - chr3_4:47894730-47894749 Msa0504010:CDS 50.0%
!! TCGGAGAAGAGGTTTTGGTG+TGG - chr3_4:47894753-47894772 Msa0504010:CDS 50.0%
!! AAGAGGTTTTGGTGTGGCGT+CGG - chr3_4:47894759-47894778 Msa0504010:CDS 50.0%
GTGGTGAAAAGAAACCAGGG+AGG - chr3_4:47894911-47894930 Msa0504010:CDS 50.0%
CTCTTAGATTGAGACCTCCC+TGG + chr3_4:47894928-47894947 None:intergenic 50.0%
CAGGGAGGTCTCAATCTAAG+AGG - chr3_4:47894926-47894945 Msa0504010:CDS 50.0%
GGCGAAACTGATCAGGATTG+AGG + chr3_4:47895828-47895847 None:intergenic 50.0%
CAATCACGGCGAAACTGATC+AGG + chr3_4:47895835-47895854 None:intergenic 50.0%
AAGAAGCTCAGCAGGATCCA+TGG + chr3_4:47895884-47895903 None:intergenic 50.0%
ATGGATCCTGCTGAGCTTCT+TGG - chr3_4:47895883-47895902 Msa0504010:CDS 50.0%
TGGATCCTGCTGAGCTTCTT+GGG - chr3_4:47895884-47895903 Msa0504010:CDS 50.0%
TGTAAAACTCACTCCTGGGG+TGG + chr3_4:47896032-47896051 None:intergenic 50.0%
CCCTCCACCAAGTCAATTTG+AGG - chr3_4:47896113-47896132 Msa0504010:CDS 50.0%
!! GCCTCAAATTGACTTGGTGG+AGG + chr3_4:47896117-47896136 None:intergenic 50.0%
! TGGTGAAATTTTCCGGTGGG+CGG - chr3_4:47896178-47896197 Msa0504010:CDS 50.0%
GTAGGGTTTCCAGTTAGTCC+TGG - chr3_4:47896219-47896238 Msa0504010:CDS 50.0%
GACATGAAGCGGTGACCCTT+TGG + chr3_4:47894327-47894346 None:intergenic 55.0%
GATGAGGGTTGCTGATGTGG+CGG - chr3_4:47894657-47894676 Msa0504010:CDS 55.0%
TGCTGATGTGGCGGTGGTTA+CGG - chr3_4:47894666-47894685 Msa0504010:CDS 55.0%
GGTTACGGAGCTGAGGAAGT+TGG - chr3_4:47894681-47894700 Msa0504010:CDS 55.0%
AGTTGGCTGTGTTGAGGGAG+CGG - chr3_4:47894698-47894717 Msa0504010:CDS 55.0%
CTGTGTTGAGGGAGCGGTTT+CGG - chr3_4:47894704-47894723 Msa0504010:CDS 55.0%
!! TTCGGAGGAATGGTGGTGGT+AGG - chr3_4:47894722-47894741 Msa0504010:CDS 55.0%
GTGGTGGTAGGAAAGGTGGT+CGG - chr3_4:47894734-47894753 Msa0504010:CDS 55.0%
AGGAAAGGTGGTCGGAGAAG+AGG - chr3_4:47894742-47894761 Msa0504010:CDS 55.0%
! GGTGGTCGGAGAAGAGGTTT+TGG - chr3_4:47894748-47894767 Msa0504010:CDS 55.0%
!!! TTTTGGTGTGGCGTCGGTGA+GGG - chr3_4:47894765-47894784 Msa0504010:CDS 55.0%
TCCTCCACCACCGCTTCATA+CGG + chr3_4:47894802-47894821 None:intergenic 55.0%
CAGGATTGAGGAGGGATGAG+AGG + chr3_4:47895816-47895835 None:intergenic 55.0%
! GGTGAAATTTTCCGGTGGGC+GGG - chr3_4:47896179-47896198 Msa0504010:CDS 55.0%
! TGCCAGCTGGTCAGGTTGTA+GGG - chr3_4:47896202-47896221 Msa0504010:CDS 55.0%
AACCCTACAACCTGACCAGC+TGG + chr3_4:47896207-47896226 None:intergenic 55.0%
GACATGAAGCGGTGACCCTT+TGG + chr3_4:47894327-47894346 None:intergenic 55.0%
GATGAGGGTTGCTGATGTGG+CGG - chr3_4:47894657-47894676 Msa0504010:CDS 55.0%
TGCTGATGTGGCGGTGGTTA+CGG - chr3_4:47894666-47894685 Msa0504010:CDS 55.0%
GGTTACGGAGCTGAGGAAGT+TGG - chr3_4:47894681-47894700 Msa0504010:CDS 55.0%
AGTTGGCTGTGTTGAGGGAG+CGG - chr3_4:47894698-47894717 Msa0504010:CDS 55.0%
CTGTGTTGAGGGAGCGGTTT+CGG - chr3_4:47894704-47894723 Msa0504010:CDS 55.0%
!! TTCGGAGGAATGGTGGTGGT+AGG - chr3_4:47894722-47894741 Msa0504010:CDS 55.0%
GTGGTGGTAGGAAAGGTGGT+CGG - chr3_4:47894734-47894753 Msa0504010:CDS 55.0%
AGGAAAGGTGGTCGGAGAAG+AGG - chr3_4:47894742-47894761 Msa0504010:CDS 55.0%
! GGTGGTCGGAGAAGAGGTTT+TGG - chr3_4:47894748-47894767 Msa0504010:CDS 55.0%
!!! TTTTGGTGTGGCGTCGGTGA+GGG - chr3_4:47894765-47894784 Msa0504010:CDS 55.0%
TCCTCCACCACCGCTTCATA+CGG + chr3_4:47894802-47894821 None:intergenic 55.0%
CAGGATTGAGGAGGGATGAG+AGG + chr3_4:47895816-47895835 None:intergenic 55.0%
! GGTGAAATTTTCCGGTGGGC+GGG - chr3_4:47896179-47896198 Msa0504010:CDS 55.0%
! TGCCAGCTGGTCAGGTTGTA+GGG - chr3_4:47896202-47896221 Msa0504010:CDS 55.0%
AACCCTACAACCTGACCAGC+TGG + chr3_4:47896207-47896226 None:intergenic 55.0%
GCTGTGTGAGTGTGACTCGC+TGG + chr3_4:47894104-47894123 None:intergenic 60.0%
TGTTGAGGGAGCGGTTTCGG+AGG - chr3_4:47894707-47894726 Msa0504010:CDS 60.0%
AGGGAGCGGTTTCGGAGGAA+TGG - chr3_4:47894712-47894731 Msa0504010:CDS 60.0%
GAGCGGTTTCGGAGGAATGG+TGG - chr3_4:47894715-47894734 Msa0504010:CDS 60.0%
CGGTTTCGGAGGAATGGTGG+TGG - chr3_4:47894718-47894737 Msa0504010:CDS 60.0%
!!! GTTTTGGTGTGGCGTCGGTG+AGG - chr3_4:47894764-47894783 Msa0504010:CDS 60.0%
CAGCACGGTCAAGTCCAAGC+AGG - chr3_4:47896003-47896022 Msa0504010:CDS 60.0%
TCCAAGCAGGAAACCACCCC+AGG - chr3_4:47896016-47896035 Msa0504010:CDS 60.0%
TCCTGGGGTGGTTTCCTGCT+TGG + chr3_4:47896020-47896039 None:intergenic 60.0%
! GTGCCAGCTGGTCAGGTTGT+AGG - chr3_4:47896201-47896220 Msa0504010:CDS 60.0%
GCTGTGTGAGTGTGACTCGC+TGG + chr3_4:47894104-47894123 None:intergenic 60.0%
TGTTGAGGGAGCGGTTTCGG+AGG - chr3_4:47894707-47894726 Msa0504010:CDS 60.0%
AGGGAGCGGTTTCGGAGGAA+TGG - chr3_4:47894712-47894731 Msa0504010:CDS 60.0%
GAGCGGTTTCGGAGGAATGG+TGG - chr3_4:47894715-47894734 Msa0504010:CDS 60.0%
CGGTTTCGGAGGAATGGTGG+TGG - chr3_4:47894718-47894737 Msa0504010:CDS 60.0%
!!! GTTTTGGTGTGGCGTCGGTG+AGG - chr3_4:47894764-47894783 Msa0504010:CDS 60.0%
CAGCACGGTCAAGTCCAAGC+AGG - chr3_4:47896003-47896022 Msa0504010:CDS 60.0%
TCCAAGCAGGAAACCACCCC+AGG - chr3_4:47896016-47896035 Msa0504010:CDS 60.0%
TCCTGGGGTGGTTTCCTGCT+TGG + chr3_4:47896020-47896039 None:intergenic 60.0%
! GTGCCAGCTGGTCAGGTTGT+AGG - chr3_4:47896201-47896220 Msa0504010:CDS 60.0%
GAGGGTTGCTGATGTGGCGG+TGG - chr3_4:47894660-47894679 Msa0504010:CDS 65.0%
TGGCGGTGGTTACGGAGCTG+AGG - chr3_4:47894674-47894693 Msa0504010:CDS 65.0%
! GGTGGTGGCGCCGTATGAAG+CGG - chr3_4:47894789-47894808 Msa0504010:CDS 65.0%
! GCCGTATGAAGCGGTGGTGG+AGG - chr3_4:47894798-47894817 Msa0504010:CDS 65.0%
GAGGGTTGCTGATGTGGCGG+TGG - chr3_4:47894660-47894679 Msa0504010:CDS 65.0%
TGGCGGTGGTTACGGAGCTG+AGG - chr3_4:47894674-47894693 Msa0504010:CDS 65.0%
! GGTGGTGGCGCCGTATGAAG+CGG - chr3_4:47894789-47894808 Msa0504010:CDS 65.0%
! GCCGTATGAAGCGGTGGTGG+AGG - chr3_4:47894798-47894817 Msa0504010:CDS 65.0%
!! TGGTGTGGCGTCGGTGAGGG+AGG - chr3_4:47894768-47894787 Msa0504010:CDS 70.0%
!! TGTGGCGTCGGTGAGGGAGG+TGG - chr3_4:47894771-47894790 Msa0504010:CDS 70.0%
GGTGGCGCCGTATGAAGCGG+TGG - chr3_4:47894792-47894811 Msa0504010:CDS 70.0%
GGCGCCGTATGAAGCGGTGG+TGG - chr3_4:47894795-47894814 Msa0504010:CDS 70.0%
!! TGGTGTGGCGTCGGTGAGGG+AGG - chr3_4:47894768-47894787 Msa0504010:CDS 70.0%
!! TGTGGCGTCGGTGAGGGAGG+TGG - chr3_4:47894771-47894790 Msa0504010:CDS 70.0%
GGTGGCGCCGTATGAAGCGG+TGG - chr3_4:47894792-47894811 Msa0504010:CDS 70.0%
GGCGCCGTATGAAGCGGTGG+TGG - chr3_4:47894795-47894814 Msa0504010:CDS 70.0%
!! GGCGTCGGTGAGGGAGGTGG+TGG - chr3_4:47894774-47894793 Msa0504010:CDS 75.0%
ACCAGCTGGCACCCGCCCAC+CGG + chr3_4:47896193-47896212 None:intergenic 75.0%
TGGGCGGGTGCCAGCTGGTC+AGG - chr3_4:47896194-47896213 Msa0504010:CDS 75.0%
!! GGCGTCGGTGAGGGAGGTGG+TGG - chr3_4:47894774-47894793 Msa0504010:CDS 75.0%
ACCAGCTGGCACCCGCCCAC+CGG + chr3_4:47896193-47896212 None:intergenic 75.0%
TGGGCGGGTGCCAGCTGGTC+AGG - chr3_4:47896194-47896213 Msa0504010:CDS 75.0%
! TCCGGTGGGCGGGTGCCAGC+TGG - chr3_4:47896189-47896208 Msa0504010:CDS 80.0%
! TCCGGTGGGCGGGTGCCAGC+TGG - chr3_4:47896189-47896208 Msa0504010:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 47894080 47896461 47894080 ID=Msa0504010;Name=Msa0504010
chr3_4 mRNA 47894080 47896461 47894080 ID=Msa0504010-mRNA-1;Parent=Msa0504010;Name=Msa0504010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=209|1|1|1|1|1|2|159|484
chr3_4 exon 47894080 47895017 47894080 ID=Msa0504010-mRNA-1:exon:10309;Parent=Msa0504010-mRNA-1
chr3_4 exon 47895577 47896461 47895577 ID=Msa0504010-mRNA-1:exon:10308;Parent=Msa0504010-mRNA-1
chr3_4 five_prime_UTR 47896253 47896461 47896253 ID=Msa0504010-mRNA-1:five_prime_utr;Parent=Msa0504010-mRNA-1
chr3_4 CDS 47895577 47896252 47895577 ID=Msa0504010-mRNA-1:cds;Parent=Msa0504010-mRNA-1
chr3_4 CDS 47894239 47895017 47894239 ID=Msa0504010-mRNA-1:cds;Parent=Msa0504010-mRNA-1
chr3_4 three_prime_UTR 47894080 47894238 47894080 ID=Msa0504010-mRNA-1:three_prime_utr;Parent=Msa0504010-mRNA-1
Gene Sequence

>Msa0504010

ATGACGAGAAAGGTTTCAAATTTCTCCGATCTGATCCAAAGGGTCACCGCTTCATGTCTCCTCAACCCACTTGTTCCAGTGAGAAAGATAGTTGAAGATGATTCACCCTACGAATCAGAAGAAAACAGAGACGAAGAACAAGAACATTATCACAGTGATGATGTTGATGATGACGACGAAGATGAGGATGAAAATGGTAACCCATTGGAGGAAAATGACGAATTCAACGAAGACAAAATGATGGGTATGAAGATTTTGAAGGTAAAGCAAATGGAAGCATTAATGGAAGAAATCTTCGAAACGGTGTCGTCTATGAAGAGAGCGTATGTGAAGTTACAAGAAGCACATTCACCTTGGGATGCAGAGAAGATGAGGGTTGCTGATGTGGCGGTGGTTACGGAGCTGAGGAAGTTGGCTGTGTTGAGGGAGCGGTTTCGGAGGAATGGTGGTGGTAGGAAAGGTGGTCGGAGAAGAGGTTTTGGTGTGGCGTCGGTGAGGGAGGTGGTGGCGCCGTATGAAGCGGTGGTGGAGGAGTTGAAGAATGAAGTGAAGGTTAAGGATTTAGAAGTGAAGAATTTGAAAGAGAAGCTTGAAGGTGTTGTTGCTCTTTCTAATAATGGTAGTGGTGAAAAGAAACCAGGGAGGTCTCAATCTAAGAGGAAACTAGGAATTCAAGCAATTGCATCAGTTCCTACACCAGAACTATTTGAAACAACTATGGCGCAAGTAAGAGAAGCATCAAAGTCCTTCACATCTATGCTTTTATCTCTAATGCACAATGCACATTGGGACATAACAGCTGCTGTTCGTTCAATTGAAGCAGCTACAGCTTCTACTGACAAATATCATAATGTTTCAACTTCATCCATTGTCTCATCTCACCATGCTAAGTATGCACTTGATTCCTATATATCGAGGAAAATCTTTCAAGGGTTCGATCATGAAACTTTCTATATGGATGGTAGCCTCTCATCCCTCCTCAATCCTGATCAGTTTCGCCGTGATTGCTTCACTCAATACAAGGATATGAAGTCCATGGATCCTGCTGAGCTTCTTGGGATTTTACCAACATGTCACTTTGGAAAATTCTGTTTCAAGAAGTACCTTGCCATTGTTCATCCAAAGATGGAAGAGTCATTGTTTGGTAACTTAGAGCAGCACGGTCAAGTCCAAGCAGGAAACCACCCCAGGAGTGAGTTTTACAATGAATTTTTAGGGTTGGCCAAAACTGTATGGTTGCTTCATTTACTTGCATTCTCATTGAACCCTCCACCAAGTCAATTTGAGGCAAGTCGTGGAGCTGAGTTCCATCCACAGTATATGGATAGTGTGGTGAAATTTTCCGGTGGGCGGGTGCCAGCTGGTCAGGTTGTAGGGTTTCCAGTTAGTCCTGGATTTAAGCTTGGGAATGGATCTGTTATAAAATCCAGGGTATATTTGATAGCCAGAACTTAA
Protein sequence

>Msa0504010

MTRKVSNFSDLIQRVTASCLLNPLVPVRKIVEDDSPYESEENRDEEQEHYHSDDVDDDDEDEDENGNPLEENDEFNEDKMMGMKILKVKQMEALMEEIFETVSSMKRAYVKLQEAHSPWDAEKMRVADVAVVTELRKLAVLRERFRRNGGGRKGGRRRGFGVASVREVVAPYEAVVEELKNEVKVKDLEVKNLKEKLEGVVALSNNGSGEKKPGRSQSKRKLGIQAIASVPTPELFETTMAQVREASKSFTSMLLSLMHNAHWDITAAVRSIEAATASTDKYHNVSTSSIVSSHHAKYALDSYISRKIFQGFDHETFYMDGSLSSLLNPDQFRRDCFTQYKDMKSMDPAELLGILPTCHFGKFCFKKYLAIVHPKMEESLFGNLEQHGQVQAGNHPRSEFYNEFLGLAKTVWLLHLLAFSLNPPPSQFEASRGAEFHPQYMDSVVKFSGGRVPAGQVVGFPVSPGFKLGNGSVIKSRVYLIART*