AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0412150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412150 MtrunA17_Chr3g0103691 97.727 484 7 2 1 483 1 481 0.0 972
Msa0412150 MtrunA17_Chr4g0011611 34.634 410 216 10 90 479 35 412 7.31e-73 236
Msa0412150 MtrunA17_Chr8g0379551 29.792 433 266 10 61 479 63 471 1.13e-52 184
Msa0412150 MtrunA17_Chr2g0315531 31.358 405 244 11 91 482 70 453 1.27e-50 179
Msa0412150 MtrunA17_Chr8g0359791 30.730 397 244 10 91 479 35 408 8.36e-50 176
Msa0412150 MtrunA17_Chr7g0230481 30.521 403 239 8 93 479 145 522 3.31e-45 165
Msa0412150 MtrunA17_Chr5g0432511 29.921 381 221 8 104 479 33 372 5.20e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412150 AT5G58960.2 62.398 492 168 7 1 483 1 484 0.0 558
Msa0412150 AT5G58960.3 62.398 492 168 7 1 483 1 484 0.0 558
Msa0412150 AT5G58960.1 62.398 492 168 7 1 483 76 559 0.0 556
Msa0412150 AT2G45260.1 33.824 408 227 8 90 479 36 418 4.91e-73 237
Msa0412150 AT3G14870.4 31.931 404 238 10 90 479 81 461 4.58e-54 188
Msa0412150 AT3G14870.5 31.931 404 238 10 90 479 81 461 4.58e-54 188
Msa0412150 AT3G14870.2 31.931 404 238 10 90 479 81 461 4.58e-54 188
Msa0412150 AT3G14870.3 31.931 404 238 10 90 479 82 462 4.63e-54 188
Msa0412150 AT3G14870.1 31.931 404 238 10 90 479 85 465 6.26e-54 188
Msa0412150 AT1G29300.1 33.663 404 217 12 90 479 85 451 2.10e-51 181
Msa0412150 AT1G53380.2 29.925 401 253 7 90 479 67 450 8.62e-51 179
Msa0412150 AT1G53380.4 29.925 401 253 7 90 479 67 450 8.62e-51 179
Msa0412150 AT1G53380.1 29.925 401 253 7 90 479 67 450 8.62e-51 179
Msa0412150 AT1G53380.3 29.925 401 253 7 90 479 67 450 8.62e-51 179
Msa0412150 AT1G53380.5 29.925 401 253 7 90 479 67 450 8.62e-51 179
Msa0412150 AT3G60680.1 30.189 424 244 10 75 479 103 493 9.37e-51 180
Msa0412150 AT2G30380.1 32.741 394 198 12 94 479 76 410 1.70e-44 161
Msa0412150 AT4G34080.1 27.211 294 173 6 90 366 12 281 8.20e-33 126
Msa0412150 AT4G33320.1 26.667 300 178 7 90 371 12 287 6.42e-29 115
Msa0412150 AT5G12900.1 24.179 335 208 12 152 477 257 554 2.62e-11 66.2
Msa0412150 AT4G36100.1 44.068 59 33 0 90 148 12 70 7.34e-11 62.8

Find 135 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATGACTCTTCCATCTT+TGG 0.231397 3_2:+55377040 None:intergenic
ATGGATCCTGCTGAGCTTCT+TGG 0.231526 3_2:-55377124 Msa0412150:CDS
GTGCCAGCTGGTCAGGTTGT+AGG 0.282373 3_2:-55376806 Msa0412150:CDS
AGCTTAAATCCAGGACTAAC+TGG 0.284394 3_2:+55376779 None:intergenic
TCCTGGGGTGGTTTCCTGCT+TGG 0.285355 3_2:+55376990 None:intergenic
AAAGCAAATGGAAGCATTAA+TGG 0.287144 3_2:-55378455 Msa0412150:CDS
CGATCATGAAACTTTCTATA+TGG 0.321609 3_2:-55377224 Msa0412150:CDS
TTTGAAACCTTTCTCGTCAT+TGG 0.325126 3_2:+55378718 None:intergenic
TGGATCCTGCTGAGCTTCTT+GGG 0.330421 3_2:-55377123 Msa0412150:CDS
CCCTTAAAACATTTAAGTTC+TGG 0.332741 3_2:+55376715 None:intergenic
TGGGCGGGTGCCAGCTGGTC+AGG 0.333732 3_2:-55376813 Msa0412150:CDS
CTTTGTCTAGCAGACTTAAC+AGG 0.336771 3_2:-55376673 Msa0412150:three_prime_UTR
TATACCATTATCACTAATTA+AGG 0.338977 3_2:+55376556 None:intergenic
TGCTGATGTGGCGGTGGTTA+CGG 0.339661 3_2:-55378341 Msa0412150:CDS
ATGAAGCAACCATACAGTTT+TGG 0.367698 3_2:+55376937 None:intergenic
CTGTGTTGAGAGAGAGGTTT+CGG 0.374525 3_2:-55378303 Msa0412150:CDS
GTTGTTGCTCTTTCTAATAA+TGG 0.378913 3_2:-55378121 Msa0412150:CDS
TCCGGTGGGCGGGTGCCAGC+TGG 0.383399 3_2:-55376818 Msa0412150:CDS
GGTGGTCGGAGAAGAGGTTT+TGG 0.384786 3_2:-55378259 Msa0412150:CDS
TGAGTTCCATCCACAGTATA+TGG 0.389849 3_2:-55376858 Msa0412150:CDS
GAAGAATGAAGTGAAGGTTA+AGG 0.391718 3_2:-55378182 Msa0412150:CDS
GACATGAAGCGGTGACCCTT+TGG 0.409014 3_2:+55378680 None:intergenic
TTAGTCCTGGATTTAAGCTT+GGG 0.409214 3_2:-55376775 Msa0412150:CDS
TTCATTGTAAAACTCACTCC+TGG 0.421633 3_2:+55376973 None:intergenic
ATAGTTGTTTCAAATAGTTC+TGG 0.422574 3_2:+55377463 None:intergenic
AGAACTATTTGAAACAACTA+TGG 0.426963 3_2:-55377461 Msa0412150:CDS
TGCCAGCTGGTCAGGTTGTA+GGG 0.430750 3_2:-55376805 Msa0412150:CDS
AAGATGGAAGAGTCATTGTT+TGG 0.439718 3_2:-55377037 Msa0412150:CDS
AATTTGAAAGAGAAGCTTGA+AGG 0.440809 3_2:-55378145 Msa0412150:CDS
GTAGGGTTTCCAGTTAGTCC+TGG 0.454644 3_2:-55376788 Msa0412150:CDS
TCTAATGCACAATGCACATT+GGG 0.456485 3_2:-55377392 Msa0412150:CDS
CAATCACGGCGAAACTGATC+AGG 0.457004 3_2:+55377175 None:intergenic
TAGGGTTGGCCAAAACTGTA+TGG 0.457586 3_2:-55376946 Msa0412150:CDS
AAGAGGAAACTAGGAATTCA+AGG 0.457961 3_2:-55378064 Msa0412150:intron
GTTAGTCCTGGATTTAAGCT+TGG 0.463063 3_2:-55376776 Msa0412150:CDS
CTCTTAGATTGAGACCTCCC+TGG 0.464013 3_2:+55378082 None:intergenic
ATTGCATAACGAACACGTGC+TGG 0.464637 3_2:+55378884 None:intergenic
GCCTCAAATTGACTTGGTGG+AGG 0.466137 3_2:+55376893 None:intergenic
CCTCAAATTGACTTGGTGGA+GGG 0.471972 3_2:+55376894 None:intergenic
GACGACGATGAGGATGAAAA+AGG 0.478211 3_2:-55378544 Msa0412150:CDS
TGCCATTGTTCATCCAAAGA+TGG 0.479244 3_2:-55377053 Msa0412150:CDS
ACAAGAAGCGCATTCACCTT+GGG 0.484059 3_2:-55378383 Msa0412150:CDS
ATATCGAGGAAAATCTTTCA+AGG 0.484464 3_2:-55377250 Msa0412150:CDS
CGACTTGCCTCAAATTGACT+TGG 0.486173 3_2:+55376887 None:intergenic
AACCCTACAACCTGACCAGC+TGG 0.487016 3_2:+55376803 None:intergenic
CCTGGATTTAAGCTTGGGAA+TGG 0.494040 3_2:-55376770 Msa0412150:CDS
CCCTCCACCAAGTCAATTTG+AGG 0.496125 3_2:-55376894 Msa0412150:CDS
TCTCAATCTAAGAGGAAACT+AGG 0.498356 3_2:-55378073 Msa0412150:CDS
TCCAAGCAGGAAACCACCCC+AGG 0.499560 3_2:-55376991 Msa0412150:CDS
ACCAGCTGGCACCCGCCCAC+CGG 0.500037 3_2:+55376817 None:intergenic
AGAGAGAGGTTTCGGAGGAA+TGG 0.500406 3_2:-55378295 Msa0412150:CDS
CACTATCCATATACTGTGGA+TGG 0.500777 3_2:+55376852 None:intergenic
AGCTGGCTGTGTTGAGAGAG+AGG 0.505406 3_2:-55378309 Msa0412150:CDS
GCTGTGTGAGTGTGACTCGC+TGG 0.505703 3_2:+55378912 None:intergenic
TACAAGAAGCGCATTCACCT+TGG 0.507217 3_2:-55378384 Msa0412150:CDS
GGTTACGGAGCTGAGGAAGC+TGG 0.509602 3_2:-55378326 Msa0412150:CDS
ATTCAACGAAGACAAAATGA+TGG 0.510894 3_2:-55378497 Msa0412150:CDS
AGGAAAGGTGGTCGGAGAAG+AGG 0.512189 3_2:-55378265 Msa0412150:CDS
TCTTCAATTATCTTCCTCAC+TGG 0.514432 3_2:+55378640 None:intergenic
AAAATCCCAAGAAGCTCAGC+AGG 0.514756 3_2:+55377118 None:intergenic
ATCTTCCTCACTGGAACAAG+TGG 0.515781 3_2:+55378649 None:intergenic
AGTTATACTGAACGAGTCAC+TGG 0.518504 3_2:-55378831 Msa0412150:five_prime_UTR
TCTGGCTATCAAATATACCT+TGG 0.521058 3_2:+55376733 None:intergenic
TACTGAACGAGTCACTGGTT+TGG 0.521795 3_2:-55378826 Msa0412150:five_prime_UTR
CTCTAATGCACAATGCACAT+TGG 0.523721 3_2:-55377393 Msa0412150:CDS
GCCGTATGAAGCAGTGGTGG+AGG 0.527747 3_2:-55378209 Msa0412150:CDS
AAGAAGCTCAGCAGGATCCA+TGG 0.530759 3_2:+55377126 None:intergenic
GTTTCAAATAGTTCTGGTGT+AGG 0.534867 3_2:+55377469 None:intergenic
GGTAGTGGTGAAAAGAAACC+AGG 0.538145 3_2:-55378100 Msa0412150:CDS
CTTGCCTCAAATTGACTTGG+TGG 0.539358 3_2:+55376890 None:intergenic
TCACTGGAACAAGTGGGTTG+AGG 0.540794 3_2:+55378656 None:intergenic
GGCGTCGGTGAGGGAGGTTG+TGG 0.540946 3_2:-55378233 Msa0412150:CDS
AATGGAAGAAATCTTCGAAA+CGG 0.543142 3_2:-55378437 Msa0412150:CDS
AACTCAACCAATGACGAGAA+AGG 0.543640 3_2:-55378725 Msa0412150:exon
AGGAATGGCGGTGGTAGGAA+AGG 0.544260 3_2:-55378280 Msa0412150:CDS
CATGAAACTTTCTATATGGA+TGG 0.544853 3_2:-55377220 Msa0412150:CDS
GCTCTTTCTAATAATGGTAG+TGG 0.548165 3_2:-55378115 Msa0412150:CDS
CTCATCTTCTCTGCATCCCA+AGG 0.549218 3_2:+55378367 None:intergenic
CAGGGAGGTCTCAATCTAAG+AGG 0.553784 3_2:-55378081 Msa0412150:CDS
TCATTGTAAAACTCACTCCT+GGG 0.554453 3_2:+55376974 None:intergenic
ATACAAGGATATGAAGTCCA+TGG 0.554965 3_2:-55377143 Msa0412150:CDS
AAGAAGAAGAAGAAACTGAG+TGG 0.556845 3_2:+55378801 None:intergenic
GGAGTTGAAGAATGAAGTGA+AGG 0.558888 3_2:-55378188 Msa0412150:CDS
TGGTGTGGCGTCGGTGAGGG+AGG 0.559820 3_2:-55378239 Msa0412150:CDS
CAGGATTGAGGAGGGATGAG+AGG 0.565482 3_2:+55377194 None:intergenic
TGGATCTGTTATAAAATCCA+AGG 0.566364 3_2:-55376750 Msa0412150:CDS
CCATTCCCAAGCTTAAATCC+AGG 0.570658 3_2:+55376770 None:intergenic
TCCTCCACCACTGCTTCATA+CGG 0.572088 3_2:+55378208 None:intergenic
AGATAAAAGCATAGATGTGA+AGG 0.572469 3_2:+55377414 None:intergenic
TATCGAGGAAAATCTTTCAA+GGG 0.572592 3_2:-55377249 Msa0412150:CDS
ATTTCTCCGATCTGATCCAA+AGG 0.573461 3_2:-55378696 Msa0412150:CDS
TAACGAACACGTGCTGGGTG+TGG 0.575859 3_2:+55378890 None:intergenic
GAAGATGAGGGTTGCTGATG+TGG 0.577480 3_2:-55378353 Msa0412150:CDS
CTTGGGATGCAGAGAAGATG+AGG 0.580380 3_2:-55378366 Msa0412150:CDS
TGTATTGAGTGAAGCAATCA+CGG 0.580907 3_2:+55377161 None:intergenic
GGCGAAACTGATCAGGATTG+AGG 0.583759 3_2:+55377182 None:intergenic
TTCCATCTTTGGATGAACAA+TGG 0.584376 3_2:+55377051 None:intergenic
TTGCATAACGAACACGTGCT+GGG 0.584612 3_2:+55378885 None:intergenic
TTCGGAGGAATGGCGGTGGT+AGG 0.590235 3_2:-55378285 Msa0412150:CDS
AATCAAGTGCATACTTAGCA+TGG 0.590253 3_2:+55377278 None:intergenic
CAGCACGGTCAAGTCCAAGC+AGG 0.591086 3_2:-55377004 Msa0412150:CDS
TTTCTCCGATCTGATCCAAA+GGG 0.592192 3_2:-55378695 Msa0412150:CDS
AGAAGAAGAAGAAACTGAGT+GGG 0.593538 3_2:+55378802 None:intergenic
TTCAACGAAGACAAAATGAT+GGG 0.602829 3_2:-55378496 Msa0412150:CDS
GAGGGTTGCTGATGTGGCGG+TGG 0.603378 3_2:-55378347 Msa0412150:CDS
AATGGCGGTGGTAGGAAAGG+TGG 0.605816 3_2:-55378277 Msa0412150:CDS
AGTCAATTTGAGGCAAGTCG+TGG 0.609506 3_2:-55376884 Msa0412150:CDS
TGTAAAACTCACTCCTGGGG+TGG 0.613108 3_2:+55376978 None:intergenic
TGATTGCTTCACTCAATACA+AGG 0.613182 3_2:-55377158 Msa0412150:CDS
CACTTGATTCCTATATATCG+AGG 0.615079 3_2:-55377264 Msa0412150:CDS
TGGCGGTGGTTACGGAGCTG+AGG 0.623071 3_2:-55378333 Msa0412150:CDS
TCCACAGTATATGGATAGTG+TGG 0.626365 3_2:-55376849 Msa0412150:CDS
AAACTGATCAGGATTGAGGA+GGG 0.627461 3_2:+55377186 None:intergenic
GAAACTGATCAGGATTGAGG+AGG 0.628809 3_2:+55377185 None:intergenic
GAGAGGTTTCGGAGGAATGG+CGG 0.641521 3_2:-55378292 Msa0412150:CDS
TTTGGTAACTTAGAGCAGCA+CGG 0.643785 3_2:-55377019 Msa0412150:CDS
AGGTTTCGGAGGAATGGCGG+TGG 0.649578 3_2:-55378289 Msa0412150:CDS
TGTGGCGCCGTATGAAGCAG+TGG 0.652115 3_2:-55378215 Msa0412150:CDS
GCGGTGGTAGGAAAGGTGGT+CGG 0.653484 3_2:-55378273 Msa0412150:CDS
GGTGACCCTTTGGATCAGAT+CGG 0.655253 3_2:+55378690 None:intergenic
TCTTCCTCACTGGAACAAGT+GGG 0.657805 3_2:+55378650 None:intergenic
GGCGCCGTATGAAGCAGTGG+TGG 0.660336 3_2:-55378212 Msa0412150:CDS
TGTTGAGAGAGAGGTTTCGG+AGG 0.661905 3_2:-55378300 Msa0412150:CDS
TTGGGATGCAGAGAAGATGA+GGG 0.665740 3_2:-55378365 Msa0412150:CDS
TCTTTGGATGAACAATGGCA+AGG 0.673047 3_2:+55377056 None:intergenic
ACCACACTATCCATATACTG+TGG 0.681895 3_2:+55376848 None:intergenic
CATTGTAAAACTCACTCCTG+GGG 0.682589 3_2:+55376975 None:intergenic
TGGGTTGAGGAGACATGAAG+CGG 0.686959 3_2:+55378669 None:intergenic
GATGAGGGTTGCTGATGTGG+CGG 0.695122 3_2:-55378350 Msa0412150:CDS
TCAACCCACTTGTTCCAGTG+AGG 0.695744 3_2:-55378654 Msa0412150:CDS
TGTTGATGATGACGACGATG+AGG 0.713712 3_2:-55378554 Msa0412150:CDS
GTAGTGGTGAAAAGAAACCA+GGG 0.716060 3_2:-55378099 Msa0412150:CDS
AGCATGGTGAGATGAGACAA+TGG 0.732639 3_2:+55377294 None:intergenic
GTGGTGAAAAGAAACCAGGG+AGG 0.821939 3_2:-55378096 Msa0412150:CDS
TTAGTGTCAGAATCACCACG+AGG 0.850261 3_2:+55378936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGGAATATAATTCTAAA+GGG - chr3_2:55377672-55377691 Msa0412150:intron 15.0%
!!! AGTTTTACAATGAATTTTTA+GGG - chr3_2:55378537-55378556 Msa0412150:CDS 15.0%
!!! TTTTGGAATATAATTCTAAA+GGG - chr3_2:55377672-55377691 Msa0412150:intron 15.0%
!!! AGTTTTACAATGAATTTTTA+GGG - chr3_2:55378537-55378556 Msa0412150:CDS 15.0%
!! AACAGCATTAAAAAAACAAA+GGG + chr3_2:55377477-55377496 None:intergenic 20.0%
!!! CTTTTGGAATATAATTCTAA+AGG - chr3_2:55377671-55377690 Msa0412150:intron 20.0%
!! AAATTCCAAATTAGTAACTT+TGG + chr3_2:55377722-55377741 None:intergenic 20.0%
!!! AAAGTTACTAATTTGGAATT+TGG - chr3_2:55377721-55377740 Msa0412150:intron 20.0%
!!! CATAAAGTTTCTTTTTGTTT+TGG - chr3_2:55377774-55377793 Msa0412150:intron 20.0%
!!! CTTTTGAATATAAACCTAAA+GGG - chr3_2:55377878-55377897 Msa0412150:intron 20.0%
!!! TTTTGAATATAAACCTAAAG+GGG - chr3_2:55377879-55377898 Msa0412150:intron 20.0%
!!! GAGTTTTACAATGAATTTTT+AGG - chr3_2:55378536-55378555 Msa0412150:CDS 20.0%
!! ATGTAATATGAAAAATCCTT+TGG - chr3_2:55378857-55378876 Msa0412150:five_prime_UTR 20.0%
!! AACAGCATTAAAAAAACAAA+GGG + chr3_2:55377477-55377496 None:intergenic 20.0%
!!! CTTTTGGAATATAATTCTAA+AGG - chr3_2:55377671-55377690 Msa0412150:intron 20.0%
!! AAATTCCAAATTAGTAACTT+TGG + chr3_2:55377722-55377741 None:intergenic 20.0%
!!! AAAGTTACTAATTTGGAATT+TGG - chr3_2:55377721-55377740 Msa0412150:intron 20.0%
!!! CATAAAGTTTCTTTTTGTTT+TGG - chr3_2:55377774-55377793 Msa0412150:intron 20.0%
!!! CTTTTGAATATAAACCTAAA+GGG - chr3_2:55377878-55377897 Msa0412150:intron 20.0%
!!! TTTTGAATATAAACCTAAAG+GGG - chr3_2:55377879-55377898 Msa0412150:intron 20.0%
!!! GAGTTTTACAATGAATTTTT+AGG - chr3_2:55378536-55378555 Msa0412150:CDS 20.0%
!! ATGTAATATGAAAAATCCTT+TGG - chr3_2:55378857-55378876 Msa0412150:five_prime_UTR 20.0%
! CAACAGCATTAAAAAAACAA+AGG + chr3_2:55377478-55377497 None:intergenic 25.0%
! AAAATGTTGTGTTTCATGTT+TGG - chr3_2:55377506-55377525 Msa0412150:intron 25.0%
!!! TGCTTATTTGATTTAGCTTT+TGG - chr3_2:55377655-55377674 Msa0412150:intron 25.0%
! ACATTCCAAAGTTACTAATT+TGG - chr3_2:55377714-55377733 Msa0412150:intron 25.0%
!! GCTTTTGAATATAAACCTAA+AGG - chr3_2:55377877-55377896 Msa0412150:intron 25.0%
! CTTCAAGAAACTATTAACTT+TGG + chr3_2:55377930-55377949 None:intergenic 25.0%
!! ATAGTTGTTTCAAATAGTTC+TGG + chr3_2:55378041-55378060 None:intergenic 25.0%
!! AGAACTATTTGAAACAACTA+TGG - chr3_2:55378040-55378059 Msa0412150:intron 25.0%
!! AAAGATTTTCCTCGATATAT+AGG + chr3_2:55378249-55378268 None:intergenic 25.0%
!!! TTACAATGAATTTTTAGGGT+TGG - chr3_2:55378541-55378560 Msa0412150:CDS 25.0%
!!! CCAGAACTTAAATGTTTTAA+GGG - chr3_2:55378786-55378805 Msa0412150:five_prime_UTR 25.0%
! AAAAACAATAATCTAGCCAA+AGG + chr3_2:55378876-55378895 None:intergenic 25.0%
!!! TTGGCTAGATTATTGTTTTT+CGG - chr3_2:55378876-55378895 Msa0412150:five_prime_UTR 25.0%
! CAACAGCATTAAAAAAACAA+AGG + chr3_2:55377478-55377497 None:intergenic 25.0%
! AAAATGTTGTGTTTCATGTT+TGG - chr3_2:55377506-55377525 Msa0412150:intron 25.0%
!!! TGCTTATTTGATTTAGCTTT+TGG - chr3_2:55377655-55377674 Msa0412150:intron 25.0%
! ACATTCCAAAGTTACTAATT+TGG - chr3_2:55377714-55377733 Msa0412150:intron 25.0%
!! GCTTTTGAATATAAACCTAA+AGG - chr3_2:55377877-55377896 Msa0412150:intron 25.0%
! CTTCAAGAAACTATTAACTT+TGG + chr3_2:55377930-55377949 None:intergenic 25.0%
!! ATAGTTGTTTCAAATAGTTC+TGG + chr3_2:55378041-55378060 None:intergenic 25.0%
!! AGAACTATTTGAAACAACTA+TGG - chr3_2:55378040-55378059 Msa0412150:intron 25.0%
!! AAAGATTTTCCTCGATATAT+AGG + chr3_2:55378249-55378268 None:intergenic 25.0%
!!! TTACAATGAATTTTTAGGGT+TGG - chr3_2:55378541-55378560 Msa0412150:CDS 25.0%
!!! CCAGAACTTAAATGTTTTAA+GGG - chr3_2:55378786-55378805 Msa0412150:five_prime_UTR 25.0%
! AAAAACAATAATCTAGCCAA+AGG + chr3_2:55378876-55378895 None:intergenic 25.0%
!!! TTGGCTAGATTATTGTTTTT+CGG - chr3_2:55378876-55378895 Msa0412150:five_prime_UTR 25.0%
!! TGTTTTCTTCTGATTCGTAA+GGG + chr3_2:55376893-55376912 None:intergenic 30.0%
ATTCAACGAAGACAAAATGA+TGG - chr3_2:55377004-55377023 Msa0412150:CDS 30.0%
TTCAACGAAGACAAAATGAT+GGG - chr3_2:55377005-55377024 Msa0412150:CDS 30.0%
!! GATTTTGAAGGTAAAGCAAA+TGG - chr3_2:55377034-55377053 Msa0412150:CDS 30.0%
!! AAAGCAAATGGAAGCATTAA+TGG - chr3_2:55377046-55377065 Msa0412150:CDS 30.0%
AATGGAAGAAATCTTCGAAA+CGG - chr3_2:55377064-55377083 Msa0412150:CDS 30.0%
AATTTGAAAGAGAAGCTTGA+AGG - chr3_2:55377356-55377375 Msa0412150:CDS 30.0%
GTTGTTGCTCTTTCTAATAA+TGG - chr3_2:55377380-55377399 Msa0412150:CDS 30.0%
! TGTGTTTCATGTTTGGAATT+TGG - chr3_2:55377513-55377532 Msa0412150:intron 30.0%
! TTCTATGCTTGTGCATATTT+TGG - chr3_2:55377850-55377869 Msa0412150:intron 30.0%
CTTGAAGATGAAATGAATTG+AGG - chr3_2:55377943-55377962 Msa0412150:intron 30.0%
! AGATAAAAGCATAGATGTGA+AGG + chr3_2:55378090-55378109 None:intergenic 30.0%
ATATCGAGGAAAATCTTTCA+AGG - chr3_2:55378251-55378270 Msa0412150:CDS 30.0%
TATCGAGGAAAATCTTTCAA+GGG - chr3_2:55378252-55378271 Msa0412150:CDS 30.0%
CGATCATGAAACTTTCTATA+TGG - chr3_2:55378277-55378296 Msa0412150:CDS 30.0%
CATGAAACTTTCTATATGGA+TGG - chr3_2:55378281-55378300 Msa0412150:CDS 30.0%
!! ATTTTACCAACATGTCACTT+TGG - chr3_2:55378401-55378420 Msa0412150:CDS 30.0%
! AATTTTCCAAAGTGACATGT+TGG + chr3_2:55378410-55378429 None:intergenic 30.0%
TGGATCTGTTATAAAATCCA+AGG - chr3_2:55378751-55378770 Msa0412150:five_prime_UTR 30.0%
! GCCAGAACTTAAATGTTTTA+AGG - chr3_2:55378785-55378804 Msa0412150:five_prime_UTR 30.0%
! CCCTTAAAACATTTAAGTTC+TGG + chr3_2:55378789-55378808 None:intergenic 30.0%
!! TGTTTTCTTCTGATTCGTAA+GGG + chr3_2:55376893-55376912 None:intergenic 30.0%
ATTCAACGAAGACAAAATGA+TGG - chr3_2:55377004-55377023 Msa0412150:CDS 30.0%
TTCAACGAAGACAAAATGAT+GGG - chr3_2:55377005-55377024 Msa0412150:CDS 30.0%
!! GATTTTGAAGGTAAAGCAAA+TGG - chr3_2:55377034-55377053 Msa0412150:CDS 30.0%
!! AAAGCAAATGGAAGCATTAA+TGG - chr3_2:55377046-55377065 Msa0412150:CDS 30.0%
AATGGAAGAAATCTTCGAAA+CGG - chr3_2:55377064-55377083 Msa0412150:CDS 30.0%
AATTTGAAAGAGAAGCTTGA+AGG - chr3_2:55377356-55377375 Msa0412150:CDS 30.0%
GTTGTTGCTCTTTCTAATAA+TGG - chr3_2:55377380-55377399 Msa0412150:CDS 30.0%
! TGTGTTTCATGTTTGGAATT+TGG - chr3_2:55377513-55377532 Msa0412150:intron 30.0%
! TTCTATGCTTGTGCATATTT+TGG - chr3_2:55377850-55377869 Msa0412150:intron 30.0%
CTTGAAGATGAAATGAATTG+AGG - chr3_2:55377943-55377962 Msa0412150:intron 30.0%
! AGATAAAAGCATAGATGTGA+AGG + chr3_2:55378090-55378109 None:intergenic 30.0%
ATATCGAGGAAAATCTTTCA+AGG - chr3_2:55378251-55378270 Msa0412150:CDS 30.0%
TATCGAGGAAAATCTTTCAA+GGG - chr3_2:55378252-55378271 Msa0412150:CDS 30.0%
CGATCATGAAACTTTCTATA+TGG - chr3_2:55378277-55378296 Msa0412150:CDS 30.0%
CATGAAACTTTCTATATGGA+TGG - chr3_2:55378281-55378300 Msa0412150:CDS 30.0%
!! ATTTTACCAACATGTCACTT+TGG - chr3_2:55378401-55378420 Msa0412150:CDS 30.0%
! AATTTTCCAAAGTGACATGT+TGG + chr3_2:55378410-55378429 None:intergenic 30.0%
TGGATCTGTTATAAAATCCA+AGG - chr3_2:55378751-55378770 Msa0412150:five_prime_UTR 30.0%
! GCCAGAACTTAAATGTTTTA+AGG - chr3_2:55378785-55378804 Msa0412150:five_prime_UTR 30.0%
! CCCTTAAAACATTTAAGTTC+TGG + chr3_2:55378789-55378808 None:intergenic 30.0%
AGAAGAAGAAGAAACTGAGT+GGG + chr3_2:55376702-55376721 None:intergenic 35.0%
AAGAAGAAGAAGAAACTGAG+TGG + chr3_2:55376703-55376722 None:intergenic 35.0%
! TTTGAAACCTTTCTCGTCAT+TGG + chr3_2:55376786-55376805 None:intergenic 35.0%
TCTTCAATTATCTTCCTCAC+TGG + chr3_2:55376864-55376883 None:intergenic 35.0%
!! GTTTTCTTCTGATTCGTAAG+GGG + chr3_2:55376892-55376911 None:intergenic 35.0%
!! CTGTTTTCTTCTGATTCGTA+AGG + chr3_2:55376894-55376913 None:intergenic 35.0%
!! ATTCGTCATTTTCCTCCAAA+GGG + chr3_2:55376986-55377005 None:intergenic 35.0%
!! AATTCGTCATTTTCCTCCAA+AGG + chr3_2:55376987-55377006 None:intergenic 35.0%
! GATGGGTATGAAGATTTTGA+AGG - chr3_2:55377022-55377041 Msa0412150:CDS 35.0%
GAAGAATGAAGTGAAGGTTA+AGG - chr3_2:55377319-55377338 Msa0412150:CDS 35.0%
GCTCTTTCTAATAATGGTAG+TGG - chr3_2:55377386-55377405 Msa0412150:CDS 35.0%
TCTCAATCTAAGAGGAAACT+AGG - chr3_2:55377428-55377447 Msa0412150:CDS 35.0%
AAGAGGAAACTAGGAATTCA+AGG - chr3_2:55377437-55377456 Msa0412150:CDS 35.0%
!! GTTTCAAATAGTTCTGGTGT+AGG + chr3_2:55378035-55378054 None:intergenic 35.0%
TCTAATGCACAATGCACATT+GGG - chr3_2:55378109-55378128 Msa0412150:CDS 35.0%
AATCAAGTGCATACTTAGCA+TGG + chr3_2:55378226-55378245 None:intergenic 35.0%
CACTTGATTCCTATATATCG+AGG - chr3_2:55378237-55378256 Msa0412150:CDS 35.0%
TGTATTGAGTGAAGCAATCA+CGG + chr3_2:55378343-55378362 None:intergenic 35.0%
TGATTGCTTCACTCAATACA+AGG - chr3_2:55378343-55378362 Msa0412150:CDS 35.0%
ATACAAGGATATGAAGTCCA+TGG - chr3_2:55378358-55378377 Msa0412150:CDS 35.0%
TTCCATCTTTGGATGAACAA+TGG + chr3_2:55378453-55378472 None:intergenic 35.0%
AACAATGACTCTTCCATCTT+TGG + chr3_2:55378464-55378483 None:intergenic 35.0%
AAGATGGAAGAGTCATTGTT+TGG - chr3_2:55378464-55378483 Msa0412150:CDS 35.0%
TCATTGTAAAACTCACTCCT+GGG + chr3_2:55378530-55378549 None:intergenic 35.0%
TTCATTGTAAAACTCACTCC+TGG + chr3_2:55378531-55378550 None:intergenic 35.0%
! ATGAAGCAACCATACAGTTT+TGG + chr3_2:55378567-55378586 None:intergenic 35.0%
! GATAGTGTGGTGAAATTTTC+CGG - chr3_2:55378665-55378684 Msa0412150:CDS 35.0%
TTAGTCCTGGATTTAAGCTT+GGG - chr3_2:55378726-55378745 Msa0412150:exon 35.0%
TCTGGCTATCAAATATACCT+TGG + chr3_2:55378771-55378790 None:intergenic 35.0%
AGAAGAAGAAGAAACTGAGT+GGG + chr3_2:55376702-55376721 None:intergenic 35.0%
AAGAAGAAGAAGAAACTGAG+TGG + chr3_2:55376703-55376722 None:intergenic 35.0%
! TTTGAAACCTTTCTCGTCAT+TGG + chr3_2:55376786-55376805 None:intergenic 35.0%
TCTTCAATTATCTTCCTCAC+TGG + chr3_2:55376864-55376883 None:intergenic 35.0%
!! GTTTTCTTCTGATTCGTAAG+GGG + chr3_2:55376892-55376911 None:intergenic 35.0%
!! CTGTTTTCTTCTGATTCGTA+AGG + chr3_2:55376894-55376913 None:intergenic 35.0%
!! ATTCGTCATTTTCCTCCAAA+GGG + chr3_2:55376986-55377005 None:intergenic 35.0%
!! AATTCGTCATTTTCCTCCAA+AGG + chr3_2:55376987-55377006 None:intergenic 35.0%
! GATGGGTATGAAGATTTTGA+AGG - chr3_2:55377022-55377041 Msa0412150:CDS 35.0%
GAAGAATGAAGTGAAGGTTA+AGG - chr3_2:55377319-55377338 Msa0412150:CDS 35.0%
GCTCTTTCTAATAATGGTAG+TGG - chr3_2:55377386-55377405 Msa0412150:CDS 35.0%
TCTCAATCTAAGAGGAAACT+AGG - chr3_2:55377428-55377447 Msa0412150:CDS 35.0%
AAGAGGAAACTAGGAATTCA+AGG - chr3_2:55377437-55377456 Msa0412150:CDS 35.0%
!! GTTTCAAATAGTTCTGGTGT+AGG + chr3_2:55378035-55378054 None:intergenic 35.0%
TCTAATGCACAATGCACATT+GGG - chr3_2:55378109-55378128 Msa0412150:CDS 35.0%
AATCAAGTGCATACTTAGCA+TGG + chr3_2:55378226-55378245 None:intergenic 35.0%
CACTTGATTCCTATATATCG+AGG - chr3_2:55378237-55378256 Msa0412150:CDS 35.0%
TGTATTGAGTGAAGCAATCA+CGG + chr3_2:55378343-55378362 None:intergenic 35.0%
TGATTGCTTCACTCAATACA+AGG - chr3_2:55378343-55378362 Msa0412150:CDS 35.0%
ATACAAGGATATGAAGTCCA+TGG - chr3_2:55378358-55378377 Msa0412150:CDS 35.0%
TTCCATCTTTGGATGAACAA+TGG + chr3_2:55378453-55378472 None:intergenic 35.0%
AACAATGACTCTTCCATCTT+TGG + chr3_2:55378464-55378483 None:intergenic 35.0%
AAGATGGAAGAGTCATTGTT+TGG - chr3_2:55378464-55378483 Msa0412150:CDS 35.0%
TCATTGTAAAACTCACTCCT+GGG + chr3_2:55378530-55378549 None:intergenic 35.0%
TTCATTGTAAAACTCACTCC+TGG + chr3_2:55378531-55378550 None:intergenic 35.0%
! ATGAAGCAACCATACAGTTT+TGG + chr3_2:55378567-55378586 None:intergenic 35.0%
! GATAGTGTGGTGAAATTTTC+CGG - chr3_2:55378665-55378684 Msa0412150:CDS 35.0%
TTAGTCCTGGATTTAAGCTT+GGG - chr3_2:55378726-55378745 Msa0412150:exon 35.0%
TCTGGCTATCAAATATACCT+TGG + chr3_2:55378771-55378790 None:intergenic 35.0%
AGTTATACTGAACGAGTCAC+TGG - chr3_2:55376670-55376689 Msa0412150:three_prime_UTR 40.0%
AACTCAACCAATGACGAGAA+AGG - chr3_2:55376776-55376795 Msa0412150:CDS 40.0%
ATTTCTCCGATCTGATCCAA+AGG - chr3_2:55376805-55376824 Msa0412150:CDS 40.0%
TTTCTCCGATCTGATCCAAA+GGG - chr3_2:55376806-55376825 Msa0412150:CDS 40.0%
GGAGTTGAAGAATGAAGTGA+AGG - chr3_2:55377313-55377332 Msa0412150:CDS 40.0%
GTAGTGGTGAAAAGAAACCA+GGG - chr3_2:55377402-55377421 Msa0412150:CDS 40.0%
CTCTAATGCACAATGCACAT+TGG - chr3_2:55378108-55378127 Msa0412150:CDS 40.0%
AAACTGATCAGGATTGAGGA+GGG + chr3_2:55378318-55378337 None:intergenic 40.0%
TCTTTGGATGAACAATGGCA+AGG + chr3_2:55378448-55378467 None:intergenic 40.0%
TGCCATTGTTCATCCAAAGA+TGG - chr3_2:55378448-55378467 Msa0412150:CDS 40.0%
! TTTGGTAACTTAGAGCAGCA+CGG - chr3_2:55378482-55378501 Msa0412150:CDS 40.0%
CATTGTAAAACTCACTCCTG+GGG + chr3_2:55378529-55378548 None:intergenic 40.0%
TGAGTTCCATCCACAGTATA+TGG - chr3_2:55378643-55378662 Msa0412150:CDS 40.0%
CACTATCCATATACTGTGGA+TGG + chr3_2:55378652-55378671 None:intergenic 40.0%
TCCACAGTATATGGATAGTG+TGG - chr3_2:55378652-55378671 Msa0412150:CDS 40.0%
ACCACACTATCCATATACTG+TGG + chr3_2:55378656-55378675 None:intergenic 40.0%
AGCTTAAATCCAGGACTAAC+TGG + chr3_2:55378725-55378744 None:intergenic 40.0%
GTTAGTCCTGGATTTAAGCT+TGG - chr3_2:55378725-55378744 Msa0412150:exon 40.0%
CTTTGTCTAGCAGACTTAAC+AGG - chr3_2:55378828-55378847 Msa0412150:five_prime_UTR 40.0%
AGTTATACTGAACGAGTCAC+TGG - chr3_2:55376670-55376689 Msa0412150:three_prime_UTR 40.0%
AACTCAACCAATGACGAGAA+AGG - chr3_2:55376776-55376795 Msa0412150:CDS 40.0%
ATTTCTCCGATCTGATCCAA+AGG - chr3_2:55376805-55376824 Msa0412150:CDS 40.0%
TTTCTCCGATCTGATCCAAA+GGG - chr3_2:55376806-55376825 Msa0412150:CDS 40.0%
GGAGTTGAAGAATGAAGTGA+AGG - chr3_2:55377313-55377332 Msa0412150:CDS 40.0%
GTAGTGGTGAAAAGAAACCA+GGG - chr3_2:55377402-55377421 Msa0412150:CDS 40.0%
CTCTAATGCACAATGCACAT+TGG - chr3_2:55378108-55378127 Msa0412150:CDS 40.0%
AAACTGATCAGGATTGAGGA+GGG + chr3_2:55378318-55378337 None:intergenic 40.0%
TCTTTGGATGAACAATGGCA+AGG + chr3_2:55378448-55378467 None:intergenic 40.0%
TGCCATTGTTCATCCAAAGA+TGG - chr3_2:55378448-55378467 Msa0412150:CDS 40.0%
! TTTGGTAACTTAGAGCAGCA+CGG - chr3_2:55378482-55378501 Msa0412150:CDS 40.0%
CATTGTAAAACTCACTCCTG+GGG + chr3_2:55378529-55378548 None:intergenic 40.0%
TGAGTTCCATCCACAGTATA+TGG - chr3_2:55378643-55378662 Msa0412150:CDS 40.0%
CACTATCCATATACTGTGGA+TGG + chr3_2:55378652-55378671 None:intergenic 40.0%
TCCACAGTATATGGATAGTG+TGG - chr3_2:55378652-55378671 Msa0412150:CDS 40.0%
ACCACACTATCCATATACTG+TGG + chr3_2:55378656-55378675 None:intergenic 40.0%
AGCTTAAATCCAGGACTAAC+TGG + chr3_2:55378725-55378744 None:intergenic 40.0%
GTTAGTCCTGGATTTAAGCT+TGG - chr3_2:55378725-55378744 Msa0412150:exon 40.0%
CTTTGTCTAGCAGACTTAAC+AGG - chr3_2:55378828-55378847 Msa0412150:five_prime_UTR 40.0%
TTGCATAACGAACACGTGCT+GGG + chr3_2:55376619-55376638 None:intergenic 45.0%
ATTGCATAACGAACACGTGC+TGG + chr3_2:55376620-55376639 None:intergenic 45.0%
! TACTGAACGAGTCACTGGTT+TGG - chr3_2:55376675-55376694 Msa0412150:three_prime_UTR 45.0%
TCTTCCTCACTGGAACAAGT+GGG + chr3_2:55376854-55376873 None:intergenic 45.0%
ATCTTCCTCACTGGAACAAG+TGG + chr3_2:55376855-55376874 None:intergenic 45.0%
!! TGTTGATGATGACGACGATG+AGG - chr3_2:55376947-55376966 Msa0412150:CDS 45.0%
GACGACGATGAGGATGAAAA+AGG - chr3_2:55376957-55376976 Msa0412150:CDS 45.0%
GGATGAAAAAGGTGACCCTT+TGG - chr3_2:55376968-55376987 Msa0412150:CDS 45.0%
TGAAAAAGGTGACCCTTTGG+AGG - chr3_2:55376971-55376990 Msa0412150:CDS 45.0%
! TACAAGAAGCGCATTCACCT+TGG - chr3_2:55377117-55377136 Msa0412150:CDS 45.0%
! ACAAGAAGCGCATTCACCTT+GGG - chr3_2:55377118-55377137 Msa0412150:CDS 45.0%
TTGGGATGCAGAGAAGATGA+GGG - chr3_2:55377136-55377155 Msa0412150:CDS 45.0%
CTGTGTTGAGAGAGAGGTTT+CGG - chr3_2:55377198-55377217 Msa0412150:CDS 45.0%
! GGTAGTGGTGAAAAGAAACC+AGG - chr3_2:55377401-55377420 Msa0412150:CDS 45.0%
!! TCAGCTTCTGAAACCCCTTT+AGG + chr3_2:55377895-55377914 None:intergenic 45.0%
AGCATGGTGAGATGAGACAA+TGG + chr3_2:55378210-55378229 None:intergenic 45.0%
GAAACTGATCAGGATTGAGG+AGG + chr3_2:55378319-55378338 None:intergenic 45.0%
AAAATCCCAAGAAGCTCAGC+AGG + chr3_2:55378386-55378405 None:intergenic 45.0%
!! TAGGGTTGGCCAAAACTGTA+TGG - chr3_2:55378555-55378574 Msa0412150:CDS 45.0%
!! CCTCAAATTGACTTGGTGGA+GGG + chr3_2:55378610-55378629 None:intergenic 45.0%
!! CTTGCCTCAAATTGACTTGG+TGG + chr3_2:55378614-55378633 None:intergenic 45.0%
CGACTTGCCTCAAATTGACT+TGG + chr3_2:55378617-55378636 None:intergenic 45.0%
! AGTCAATTTGAGGCAAGTCG+TGG - chr3_2:55378617-55378636 Msa0412150:CDS 45.0%
! AGTGTGGTGAAATTTTCCGG+TGG - chr3_2:55378668-55378687 Msa0412150:CDS 45.0%
! GTGTGGTGAAATTTTCCGGT+GGG - chr3_2:55378669-55378688 Msa0412150:CDS 45.0%
CCATTCCCAAGCTTAAATCC+AGG + chr3_2:55378734-55378753 None:intergenic 45.0%
CCTGGATTTAAGCTTGGGAA+TGG - chr3_2:55378731-55378750 Msa0412150:exon 45.0%
TTGCATAACGAACACGTGCT+GGG + chr3_2:55376619-55376638 None:intergenic 45.0%
ATTGCATAACGAACACGTGC+TGG + chr3_2:55376620-55376639 None:intergenic 45.0%
! TACTGAACGAGTCACTGGTT+TGG - chr3_2:55376675-55376694 Msa0412150:three_prime_UTR 45.0%
TCTTCCTCACTGGAACAAGT+GGG + chr3_2:55376854-55376873 None:intergenic 45.0%
ATCTTCCTCACTGGAACAAG+TGG + chr3_2:55376855-55376874 None:intergenic 45.0%
!! TGTTGATGATGACGACGATG+AGG - chr3_2:55376947-55376966 Msa0412150:CDS 45.0%
GACGACGATGAGGATGAAAA+AGG - chr3_2:55376957-55376976 Msa0412150:CDS 45.0%
GGATGAAAAAGGTGACCCTT+TGG - chr3_2:55376968-55376987 Msa0412150:CDS 45.0%
TGAAAAAGGTGACCCTTTGG+AGG - chr3_2:55376971-55376990 Msa0412150:CDS 45.0%
! TACAAGAAGCGCATTCACCT+TGG - chr3_2:55377117-55377136 Msa0412150:CDS 45.0%
! ACAAGAAGCGCATTCACCTT+GGG - chr3_2:55377118-55377137 Msa0412150:CDS 45.0%
TTGGGATGCAGAGAAGATGA+GGG - chr3_2:55377136-55377155 Msa0412150:CDS 45.0%
CTGTGTTGAGAGAGAGGTTT+CGG - chr3_2:55377198-55377217 Msa0412150:CDS 45.0%
! GGTAGTGGTGAAAAGAAACC+AGG - chr3_2:55377401-55377420 Msa0412150:CDS 45.0%
!! TCAGCTTCTGAAACCCCTTT+AGG + chr3_2:55377895-55377914 None:intergenic 45.0%
AGCATGGTGAGATGAGACAA+TGG + chr3_2:55378210-55378229 None:intergenic 45.0%
GAAACTGATCAGGATTGAGG+AGG + chr3_2:55378319-55378338 None:intergenic 45.0%
AAAATCCCAAGAAGCTCAGC+AGG + chr3_2:55378386-55378405 None:intergenic 45.0%
!! TAGGGTTGGCCAAAACTGTA+TGG - chr3_2:55378555-55378574 Msa0412150:CDS 45.0%
!! CCTCAAATTGACTTGGTGGA+GGG + chr3_2:55378610-55378629 None:intergenic 45.0%
!! CTTGCCTCAAATTGACTTGG+TGG + chr3_2:55378614-55378633 None:intergenic 45.0%
CGACTTGCCTCAAATTGACT+TGG + chr3_2:55378617-55378636 None:intergenic 45.0%
! AGTCAATTTGAGGCAAGTCG+TGG - chr3_2:55378617-55378636 Msa0412150:CDS 45.0%
! AGTGTGGTGAAATTTTCCGG+TGG - chr3_2:55378668-55378687 Msa0412150:CDS 45.0%
! GTGTGGTGAAATTTTCCGGT+GGG - chr3_2:55378669-55378688 Msa0412150:CDS 45.0%
CCATTCCCAAGCTTAAATCC+AGG + chr3_2:55378734-55378753 None:intergenic 45.0%
CCTGGATTTAAGCTTGGGAA+TGG - chr3_2:55378731-55378750 Msa0412150:exon 45.0%
GGTGACCCTTTGGATCAGAT+CGG + chr3_2:55376814-55376833 None:intergenic 50.0%
! TGGGTTGAGGAGACATGAAG+CGG + chr3_2:55376835-55376854 None:intergenic 50.0%
!! TCACTGGAACAAGTGGGTTG+AGG + chr3_2:55376848-55376867 None:intergenic 50.0%
TCAACCCACTTGTTCCAGTG+AGG - chr3_2:55376847-55376866 Msa0412150:CDS 50.0%
CTCATCTTCTCTGCATCCCA+AGG + chr3_2:55377137-55377156 None:intergenic 50.0%
CTTGGGATGCAGAGAAGATG+AGG - chr3_2:55377135-55377154 Msa0412150:CDS 50.0%
GAAGATGAGGGTTGCTGATG+TGG - chr3_2:55377148-55377167 Msa0412150:CDS 50.0%
TGTTGAGAGAGAGGTTTCGG+AGG - chr3_2:55377201-55377220 Msa0412150:CDS 50.0%
AGAGAGAGGTTTCGGAGGAA+TGG - chr3_2:55377206-55377225 Msa0412150:CDS 50.0%
!! TCGGAGAAGAGGTTTTGGTG+TGG - chr3_2:55377247-55377266 Msa0412150:CDS 50.0%
!! AAGAGGTTTTGGTGTGGCGT+CGG - chr3_2:55377253-55377272 Msa0412150:CDS 50.0%
TCCTCCACCACTGCTTCATA+CGG + chr3_2:55377296-55377315 None:intergenic 50.0%
GTGGTGAAAAGAAACCAGGG+AGG - chr3_2:55377405-55377424 Msa0412150:CDS 50.0%
CTCTTAGATTGAGACCTCCC+TGG + chr3_2:55377422-55377441 None:intergenic 50.0%
CAGGGAGGTCTCAATCTAAG+AGG - chr3_2:55377420-55377439 Msa0412150:CDS 50.0%
GGCGAAACTGATCAGGATTG+AGG + chr3_2:55378322-55378341 None:intergenic 50.0%
CAATCACGGCGAAACTGATC+AGG + chr3_2:55378329-55378348 None:intergenic 50.0%
AAGAAGCTCAGCAGGATCCA+TGG + chr3_2:55378378-55378397 None:intergenic 50.0%
ATGGATCCTGCTGAGCTTCT+TGG - chr3_2:55378377-55378396 Msa0412150:CDS 50.0%
TGGATCCTGCTGAGCTTCTT+GGG - chr3_2:55378378-55378397 Msa0412150:CDS 50.0%
TGTAAAACTCACTCCTGGGG+TGG + chr3_2:55378526-55378545 None:intergenic 50.0%
CCCTCCACCAAGTCAATTTG+AGG - chr3_2:55378607-55378626 Msa0412150:CDS 50.0%
!! GCCTCAAATTGACTTGGTGG+AGG + chr3_2:55378611-55378630 None:intergenic 50.0%
! TGGTGAAATTTTCCGGTGGG+CGG - chr3_2:55378672-55378691 Msa0412150:CDS 50.0%
GTAGGGTTTCCAGTTAGTCC+TGG - chr3_2:55378713-55378732 Msa0412150:CDS 50.0%
GGTGACCCTTTGGATCAGAT+CGG + chr3_2:55376814-55376833 None:intergenic 50.0%
! TGGGTTGAGGAGACATGAAG+CGG + chr3_2:55376835-55376854 None:intergenic 50.0%
!! TCACTGGAACAAGTGGGTTG+AGG + chr3_2:55376848-55376867 None:intergenic 50.0%
TCAACCCACTTGTTCCAGTG+AGG - chr3_2:55376847-55376866 Msa0412150:CDS 50.0%
CTCATCTTCTCTGCATCCCA+AGG + chr3_2:55377137-55377156 None:intergenic 50.0%
CTTGGGATGCAGAGAAGATG+AGG - chr3_2:55377135-55377154 Msa0412150:CDS 50.0%
GAAGATGAGGGTTGCTGATG+TGG - chr3_2:55377148-55377167 Msa0412150:CDS 50.0%
TGTTGAGAGAGAGGTTTCGG+AGG - chr3_2:55377201-55377220 Msa0412150:CDS 50.0%
AGAGAGAGGTTTCGGAGGAA+TGG - chr3_2:55377206-55377225 Msa0412150:CDS 50.0%
!! TCGGAGAAGAGGTTTTGGTG+TGG - chr3_2:55377247-55377266 Msa0412150:CDS 50.0%
!! AAGAGGTTTTGGTGTGGCGT+CGG - chr3_2:55377253-55377272 Msa0412150:CDS 50.0%
TCCTCCACCACTGCTTCATA+CGG + chr3_2:55377296-55377315 None:intergenic 50.0%
GTGGTGAAAAGAAACCAGGG+AGG - chr3_2:55377405-55377424 Msa0412150:CDS 50.0%
CTCTTAGATTGAGACCTCCC+TGG + chr3_2:55377422-55377441 None:intergenic 50.0%
CAGGGAGGTCTCAATCTAAG+AGG - chr3_2:55377420-55377439 Msa0412150:CDS 50.0%
GGCGAAACTGATCAGGATTG+AGG + chr3_2:55378322-55378341 None:intergenic 50.0%
CAATCACGGCGAAACTGATC+AGG + chr3_2:55378329-55378348 None:intergenic 50.0%
AAGAAGCTCAGCAGGATCCA+TGG + chr3_2:55378378-55378397 None:intergenic 50.0%
ATGGATCCTGCTGAGCTTCT+TGG - chr3_2:55378377-55378396 Msa0412150:CDS 50.0%
TGGATCCTGCTGAGCTTCTT+GGG - chr3_2:55378378-55378397 Msa0412150:CDS 50.0%
TGTAAAACTCACTCCTGGGG+TGG + chr3_2:55378526-55378545 None:intergenic 50.0%
CCCTCCACCAAGTCAATTTG+AGG - chr3_2:55378607-55378626 Msa0412150:CDS 50.0%
!! GCCTCAAATTGACTTGGTGG+AGG + chr3_2:55378611-55378630 None:intergenic 50.0%
! TGGTGAAATTTTCCGGTGGG+CGG - chr3_2:55378672-55378691 Msa0412150:CDS 50.0%
GTAGGGTTTCCAGTTAGTCC+TGG - chr3_2:55378713-55378732 Msa0412150:CDS 50.0%
TAACGAACACGTGCTGGGTG+TGG + chr3_2:55376614-55376633 None:intergenic 55.0%
GACATGAAGCGGTGACCCTT+TGG + chr3_2:55376824-55376843 None:intergenic 55.0%
GATGAGGGTTGCTGATGTGG+CGG - chr3_2:55377151-55377170 Msa0412150:CDS 55.0%
TGCTGATGTGGCGGTGGTTA+CGG - chr3_2:55377160-55377179 Msa0412150:CDS 55.0%
AGCTGGCTGTGTTGAGAGAG+AGG - chr3_2:55377192-55377211 Msa0412150:CDS 55.0%
GAGAGGTTTCGGAGGAATGG+CGG - chr3_2:55377209-55377228 Msa0412150:CDS 55.0%
AGGAATGGCGGTGGTAGGAA+AGG - chr3_2:55377221-55377240 Msa0412150:CDS 55.0%
AATGGCGGTGGTAGGAAAGG+TGG - chr3_2:55377224-55377243 Msa0412150:CDS 55.0%
AGGAAAGGTGGTCGGAGAAG+AGG - chr3_2:55377236-55377255 Msa0412150:CDS 55.0%
! GGTGGTCGGAGAAGAGGTTT+TGG - chr3_2:55377242-55377261 Msa0412150:CDS 55.0%
!!! TTTTGGTGTGGCGTCGGTGA+GGG - chr3_2:55377259-55377278 Msa0412150:CDS 55.0%
CAGGATTGAGGAGGGATGAG+AGG + chr3_2:55378310-55378329 None:intergenic 55.0%
! GGTGAAATTTTCCGGTGGGC+GGG - chr3_2:55378673-55378692 Msa0412150:CDS 55.0%
! TGCCAGCTGGTCAGGTTGTA+GGG - chr3_2:55378696-55378715 Msa0412150:CDS 55.0%
AACCCTACAACCTGACCAGC+TGG + chr3_2:55378701-55378720 None:intergenic 55.0%
TAACGAACACGTGCTGGGTG+TGG + chr3_2:55376614-55376633 None:intergenic 55.0%
GACATGAAGCGGTGACCCTT+TGG + chr3_2:55376824-55376843 None:intergenic 55.0%
GATGAGGGTTGCTGATGTGG+CGG - chr3_2:55377151-55377170 Msa0412150:CDS 55.0%
TGCTGATGTGGCGGTGGTTA+CGG - chr3_2:55377160-55377179 Msa0412150:CDS 55.0%
AGCTGGCTGTGTTGAGAGAG+AGG - chr3_2:55377192-55377211 Msa0412150:CDS 55.0%
GAGAGGTTTCGGAGGAATGG+CGG - chr3_2:55377209-55377228 Msa0412150:CDS 55.0%
AGGAATGGCGGTGGTAGGAA+AGG - chr3_2:55377221-55377240 Msa0412150:CDS 55.0%
AATGGCGGTGGTAGGAAAGG+TGG - chr3_2:55377224-55377243 Msa0412150:CDS 55.0%
AGGAAAGGTGGTCGGAGAAG+AGG - chr3_2:55377236-55377255 Msa0412150:CDS 55.0%
! GGTGGTCGGAGAAGAGGTTT+TGG - chr3_2:55377242-55377261 Msa0412150:CDS 55.0%
!!! TTTTGGTGTGGCGTCGGTGA+GGG - chr3_2:55377259-55377278 Msa0412150:CDS 55.0%
CAGGATTGAGGAGGGATGAG+AGG + chr3_2:55378310-55378329 None:intergenic 55.0%
! GGTGAAATTTTCCGGTGGGC+GGG - chr3_2:55378673-55378692 Msa0412150:CDS 55.0%
! TGCCAGCTGGTCAGGTTGTA+GGG - chr3_2:55378696-55378715 Msa0412150:CDS 55.0%
AACCCTACAACCTGACCAGC+TGG + chr3_2:55378701-55378720 None:intergenic 55.0%
GCTGTGTGAGTGTGACTCGC+TGG + chr3_2:55376592-55376611 None:intergenic 60.0%
GGTTACGGAGCTGAGGAAGC+TGG - chr3_2:55377175-55377194 Msa0412150:CDS 60.0%
AGGTTTCGGAGGAATGGCGG+TGG - chr3_2:55377212-55377231 Msa0412150:CDS 60.0%
TTCGGAGGAATGGCGGTGGT+AGG - chr3_2:55377216-55377235 Msa0412150:CDS 60.0%
GCGGTGGTAGGAAAGGTGGT+CGG - chr3_2:55377228-55377247 Msa0412150:CDS 60.0%
!!! GTTTTGGTGTGGCGTCGGTG+AGG - chr3_2:55377258-55377277 Msa0412150:CDS 60.0%
TGTGGCGCCGTATGAAGCAG+TGG - chr3_2:55377286-55377305 Msa0412150:CDS 60.0%
GCCGTATGAAGCAGTGGTGG+AGG - chr3_2:55377292-55377311 Msa0412150:CDS 60.0%
CAGCACGGTCAAGTCCAAGC+AGG - chr3_2:55378497-55378516 Msa0412150:CDS 60.0%
TCCAAGCAGGAAACCACCCC+AGG - chr3_2:55378510-55378529 Msa0412150:CDS 60.0%
TCCTGGGGTGGTTTCCTGCT+TGG + chr3_2:55378514-55378533 None:intergenic 60.0%
! GTGCCAGCTGGTCAGGTTGT+AGG - chr3_2:55378695-55378714 Msa0412150:CDS 60.0%
GCTGTGTGAGTGTGACTCGC+TGG + chr3_2:55376592-55376611 None:intergenic 60.0%
GGTTACGGAGCTGAGGAAGC+TGG - chr3_2:55377175-55377194 Msa0412150:CDS 60.0%
AGGTTTCGGAGGAATGGCGG+TGG - chr3_2:55377212-55377231 Msa0412150:CDS 60.0%
TTCGGAGGAATGGCGGTGGT+AGG - chr3_2:55377216-55377235 Msa0412150:CDS 60.0%
GCGGTGGTAGGAAAGGTGGT+CGG - chr3_2:55377228-55377247 Msa0412150:CDS 60.0%
!!! GTTTTGGTGTGGCGTCGGTG+AGG - chr3_2:55377258-55377277 Msa0412150:CDS 60.0%
TGTGGCGCCGTATGAAGCAG+TGG - chr3_2:55377286-55377305 Msa0412150:CDS 60.0%
GCCGTATGAAGCAGTGGTGG+AGG - chr3_2:55377292-55377311 Msa0412150:CDS 60.0%
CAGCACGGTCAAGTCCAAGC+AGG - chr3_2:55378497-55378516 Msa0412150:CDS 60.0%
TCCAAGCAGGAAACCACCCC+AGG - chr3_2:55378510-55378529 Msa0412150:CDS 60.0%
TCCTGGGGTGGTTTCCTGCT+TGG + chr3_2:55378514-55378533 None:intergenic 60.0%
! GTGCCAGCTGGTCAGGTTGT+AGG - chr3_2:55378695-55378714 Msa0412150:CDS 60.0%
GAGGGTTGCTGATGTGGCGG+TGG - chr3_2:55377154-55377173 Msa0412150:CDS 65.0%
TGGCGGTGGTTACGGAGCTG+AGG - chr3_2:55377168-55377187 Msa0412150:CDS 65.0%
GGCGCCGTATGAAGCAGTGG+TGG - chr3_2:55377289-55377308 Msa0412150:CDS 65.0%
GAGGGTTGCTGATGTGGCGG+TGG - chr3_2:55377154-55377173 Msa0412150:CDS 65.0%
TGGCGGTGGTTACGGAGCTG+AGG - chr3_2:55377168-55377187 Msa0412150:CDS 65.0%
GGCGCCGTATGAAGCAGTGG+TGG - chr3_2:55377289-55377308 Msa0412150:CDS 65.0%
!! TGGTGTGGCGTCGGTGAGGG+AGG - chr3_2:55377262-55377281 Msa0412150:CDS 70.0%
!! GGCGTCGGTGAGGGAGGTTG+TGG - chr3_2:55377268-55377287 Msa0412150:CDS 70.0%
!! TGGTGTGGCGTCGGTGAGGG+AGG - chr3_2:55377262-55377281 Msa0412150:CDS 70.0%
!! GGCGTCGGTGAGGGAGGTTG+TGG - chr3_2:55377268-55377287 Msa0412150:CDS 70.0%
ACCAGCTGGCACCCGCCCAC+CGG + chr3_2:55378687-55378706 None:intergenic 75.0%
TGGGCGGGTGCCAGCTGGTC+AGG - chr3_2:55378688-55378707 Msa0412150:CDS 75.0%
ACCAGCTGGCACCCGCCCAC+CGG + chr3_2:55378687-55378706 None:intergenic 75.0%
TGGGCGGGTGCCAGCTGGTC+AGG - chr3_2:55378688-55378707 Msa0412150:CDS 75.0%
! TCCGGTGGGCGGGTGCCAGC+TGG - chr3_2:55378683-55378702 Msa0412150:CDS 80.0%
! TCCGGTGGGCGGGTGCCAGC+TGG - chr3_2:55378683-55378702 Msa0412150:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 55376568 55378955 55376568 ID=Msa0412150;Name=Msa0412150
chr3_2 mRNA 55376568 55378955 55376568 ID=Msa0412150-mRNA-1;Parent=Msa0412150;Name=Msa0412150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=218|1|1|1|1|1|2|159|483
chr3_2 exon 55376568 55377505 55376568 ID=Msa0412150-mRNA-1:exon:11235;Parent=Msa0412150-mRNA-1
chr3_2 exon 55378065 55378955 55378065 ID=Msa0412150-mRNA-1:exon:11234;Parent=Msa0412150-mRNA-1
chr3_2 five_prime_UTR 55378738 55378955 55378738 ID=Msa0412150-mRNA-1:five_prime_utr;Parent=Msa0412150-mRNA-1
chr3_2 CDS 55378065 55378737 55378065 ID=Msa0412150-mRNA-1:cds;Parent=Msa0412150-mRNA-1
chr3_2 CDS 55376727 55377505 55376727 ID=Msa0412150-mRNA-1:cds;Parent=Msa0412150-mRNA-1
chr3_2 three_prime_UTR 55376568 55376726 55376568 ID=Msa0412150-mRNA-1:three_prime_utr;Parent=Msa0412150-mRNA-1
Gene Sequence

>Msa0412150

ATGACGAGAAAGGTTTCAAATTTCTCCGATCTGATCCAAAGGGTCACCGCTTCATGTCTCCTCAACCCACTTGTTCCAGTGAGGAAGATAATTGAAGATGATTCCCCTTACGAATCAGAAGAAAACAGAGACGAAGAACAAGAACATTATCACAGTGATGATGTTGATGATGACGACGATGAGGATGAAAAAGGTGACCCTTTGGAGGAAAATGACGAATTCAACGAAGACAAAATGATGGGTATGAAGATTTTGAAGGTAAAGCAAATGGAAGCATTAATGGAAGAAATCTTCGAAACGGTGTCGTCTATGAAGAGAGCGTATGTGAAGTTACAAGAAGCGCATTCACCTTGGGATGCAGAGAAGATGAGGGTTGCTGATGTGGCGGTGGTTACGGAGCTGAGGAAGCTGGCTGTGTTGAGAGAGAGGTTTCGGAGGAATGGCGGTGGTAGGAAAGGTGGTCGGAGAAGAGGTTTTGGTGTGGCGTCGGTGAGGGAGGTTGTGGCGCCGTATGAAGCAGTGGTGGAGGAGTTGAAGAATGAAGTGAAGGTTAAGGATTTAGAAGTGAAGAATTTGAAAGAGAAGCTTGAAGGTGTTGTTGCTCTTTCTAATAATGGTAGTGGTGAAAAGAAACCAGGGAGGTCTCAATCTAAGAGGAAACTAGGAATTCAAGCAATTGCATCAGTTCCTACACCAGAACTATTTGAAACAACTATGGTGCAAGTAAGAGAAGCATCAAAGTCCTTCACATCTATGCTTTTATCTCTAATGCACAATGCACATTGGGACATAACAGCTGCTGTTCGTTCAATTGAAGCAGCTACAGCTTCTACTGACAAATATCATAATGTTTCAACTTCATCCATTGTCTCATCTCACCATGCTAAGTATGCACTTGATTCCTATATATCGAGGAAAATCTTTCAAGGGTTCGATCATGAAACTTTCTATATGGATGGTAGCCTCTCATCCCTCCTCAATCCTGATCAGTTTCGCCGTGATTGCTTCACTCAATACAAGGATATGAAGTCCATGGATCCTGCTGAGCTTCTTGGGATTTTACCAACATGTCACTTTGGAAAATTCTGTTTCAAGAAGTACCTTGCCATTGTTCATCCAAAGATGGAAGAGTCATTGTTTGGTAACTTAGAGCAGCACGGTCAAGTCCAAGCAGGAAACCACCCCAGGAGTGAGTTTTACAATGAATTTTTAGGGTTGGCCAAAACTGTATGGTTGCTTCATTTACTTGCATTCTCATTGAACCCTCCACCAAGTCAATTTGAGGCAAGTCGTGGAGCTGAGTTCCATCCACAGTATATGGATAGTGTGGTGAAATTTTCCGGTGGGCGGGTGCCAGCTGGTCAGGTTGTAGGGTTTCCAGTTAGTCCTGGATTTAAGCTTGGGAATGGATCTGTTATAAAATCCAAGGTATATTTGATAGCCAGAACTTAA
Protein sequence

>Msa0412150

MTRKVSNFSDLIQRVTASCLLNPLVPVRKIIEDDSPYESEENRDEEQEHYHSDDVDDDDDEDEKGDPLEENDEFNEDKMMGMKILKVKQMEALMEEIFETVSSMKRAYVKLQEAHSPWDAEKMRVADVAVVTELRKLAVLRERFRRNGGGRKGGRRRGFGVASVREVVAPYEAVVEELKNEVKVKDLEVKNLKEKLEGVVALSNNGSGEKKPGRSQSKRKLGIQAIASVPTPELFETTMVQVREASKSFTSMLLSLMHNAHWDITAAVRSIEAATASTDKYHNVSTSSIVSSHHAKYALDSYISRKIFQGFDHETFYMDGSLSSLLNPDQFRRDCFTQYKDMKSMDPAELLGILPTCHFGKFCFKKYLAIVHPKMEESLFGNLEQHGQVQAGNHPRSEFYNEFLGLAKTVWLLHLLAFSLNPPPSQFEASRGAEFHPQYMDSVVKFSGGRVPAGQVVGFPVSPGFKLGNGSVIKSKVYLIART*