AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0505090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505090 MtrunA17_Chr3g0105811 97.514 925 22 1 1 924 1 925 0.0 1867
Msa0505090 MtrunA17_Chr4g0005681 58.617 940 368 9 1 921 9 946 0.0 1107
Msa0505090 MtrunA17_Chr7g0243131 64.629 687 243 0 235 921 1 687 0.0 936
Msa0505090 MtrunA17_Chr1g0185181 47.114 849 428 6 74 919 51 881 0.0 783
Msa0505090 MtrunA17_Chr7g0243111 43.158 190 97 3 1 183 9 194 6.56e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505090 AT3G51770.2 62.993 862 317 2 62 923 97 956 0.0 1149
Msa0505090 AT3G51770.1 62.993 862 317 2 62 923 89 948 0.0 1149
Msa0505090 AT5G58550.1 56.432 925 380 6 1 918 1 909 0.0 1028
Msa0505090 AT4G02680.1 48.288 847 423 4 74 919 51 883 0.0 774

Find 171 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACACCTTGATCCTTTA+AGG 0.060854 3_4:+50415498 Msa0505090:CDS
CAACAAGGTTGATTGGTTTA+AGG 0.163269 3_4:-50412830 None:intergenic
AAGGAAAAGTTGGAAAATTT+AGG 0.184841 3_4:+50413695 Msa0505090:CDS
GCAAATAAAGGAAGGGATTA+TGG 0.210325 3_4:+50414174 Msa0505090:CDS
CCAAAGAAGAATTTGGAAAA+TGG 0.220561 3_4:+50413116 Msa0505090:CDS
TACAATATGGGAAGAGAAAA+AGG 0.232145 3_4:+50414067 Msa0505090:CDS
TCCAATGCTCTATATTTATA+CGG 0.234438 3_4:-50414136 None:intergenic
TGAATGTCCAAAGAAGAATT+TGG 0.244879 3_4:+50413109 Msa0505090:CDS
AGTTCAACACTTTAGCTTAA+AGG 0.245361 3_4:+50412535 Msa0505090:five_prime_UTR
CAGTGATCATTAATTGAAAA+AGG 0.250740 3_4:-50413146 None:intergenic
CGTTGATGATGTTGGTTCTT+TGG 0.260043 3_4:+50414444 Msa0505090:CDS
CCTGCTGCTCTGTATCTATA+AGG 0.263658 3_4:-50415527 None:intergenic
ATGGAGTTAGATAAGTTTCT+AGG 0.286460 3_4:+50414193 Msa0505090:CDS
GCATTGATACTTATTGAGTA+TGG 0.289441 3_4:+50413557 Msa0505090:CDS
ATTAACTTATAAGCTGAATA+TGG 0.291663 3_4:-50413986 None:intergenic
AGGAAAAGTTGGAAAATTTA+GGG 0.292799 3_4:+50413696 Msa0505090:CDS
AGAAGCTCTAAAACAGTATT+AGG 0.293859 3_4:-50413449 None:intergenic
GTTCAACACTTTAGCTTAAA+GGG 0.306153 3_4:+50412536 Msa0505090:five_prime_UTR
CTATAAGGGTATGTCCTTAA+AGG 0.309106 3_4:-50415512 None:intergenic
ATCTTCATGTGATTCTCATT+TGG 0.316040 3_4:+50413508 Msa0505090:CDS
TTTGTTTATAGTATCAAATA+TGG 0.323757 3_4:+50416263 Msa0505090:three_prime_UTR
AGAGCGAGCATTGTACAATA+TGG 0.334761 3_4:+50414054 Msa0505090:CDS
TTCGATGAAGCAGTTGAATT+AGG 0.336536 3_4:+50413911 Msa0505090:CDS
ACCTGATTGTTTAGAGTTGA+GGG 0.350604 3_4:+50414228 Msa0505090:CDS
CAAAGAAGAATTTGGAAAAT+GGG 0.354347 3_4:+50413117 Msa0505090:CDS
TCTCATTTGGCTTCAATTGT+TGG 0.360828 3_4:+50413521 Msa0505090:CDS
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 3_4:-50414496 None:intergenic
ACTTTAGCTTAAAGGGTTGT+TGG 0.363563 3_4:+50412543 Msa0505090:five_prime_UTR
TTAAGGTAAGGTTCTATAGA+TGG 0.365386 3_4:-50412813 None:intergenic
AGTTATGTAATTAGCCTCTA+TGG 0.365662 3_4:-50414314 None:intergenic
AATATGAACCTTTGAGAAAA+GGG 0.369712 3_4:-50412485 None:intergenic
ATAACATAAGAAGAAGATTC+AGG 0.375878 3_4:-50415080 None:intergenic
AGCTTCTGTCATTTGCCAAT+AGG 0.381135 3_4:+50413465 Msa0505090:CDS
AAATGATTTCTGAATTTCAA+TGG 0.382753 3_4:-50415009 None:intergenic
AAAGTCTCAACAAGGTTGAT+TGG 0.386359 3_4:-50412837 None:intergenic
AGTTCTTCATCTGAAACTAA+TGG 0.389641 3_4:+50412645 Msa0505090:CDS
TTTGAATTATGAAGCGAATT+CGG 0.390936 3_4:-50413641 None:intergenic
TCTGTTAAGGTTGTGAGGTT+TGG 0.394276 3_4:-50412679 None:intergenic
CACCTGATTGTTTAGAGTTG+AGG 0.398050 3_4:+50414227 Msa0505090:CDS
TGCAATGCGCAGTTTGCGGC+TGG 0.409116 3_4:+50414884 Msa0505090:CDS
AAATATGAACCTTTGAGAAA+AGG 0.411072 3_4:-50412486 None:intergenic
AGATGAAGCATTTGAAGATC+TGG 0.417480 3_4:-50416038 None:intergenic
ACAACAATGCACTTGCGATT+AGG 0.421565 3_4:+50415303 Msa0505090:CDS
AGTCGAGGAGAAGCAAATAA+AGG 0.422463 3_4:+50414162 Msa0505090:CDS
GACATCTTCTGAGTAGCTTC+TGG 0.426439 3_4:-50412956 None:intergenic
ACTTTGAATGAAAATAAACT+TGG 0.427860 3_4:-50412515 None:intergenic
ATATTGTTCTGTGTCTGTTA+AGG 0.430267 3_4:-50412692 None:intergenic
TTAAAGGGTTGTTGGAAAAG+TGG 0.432318 3_4:+50412551 Msa0505090:five_prime_UTR
TAGAATTCAGAAGAAGAATC+AGG 0.435527 3_4:+50414384 Msa0505090:CDS
GAGGATCAAAGGTGAATGTT+TGG 0.435726 3_4:+50414345 Msa0505090:CDS
AGCTATACATTGGATGAATC+AGG 0.436130 3_4:+50416214 Msa0505090:three_prime_UTR
ACTTGTTGGTGTTTGTTCAA+TGG 0.438005 3_4:+50413064 Msa0505090:CDS
CTCCTCACAACAAAACCTAT+TGG 0.438977 3_4:-50413480 None:intergenic
TGCTTTCTTCCATTGCCACC+TGG 0.443243 3_4:-50413751 None:intergenic
CATGGTTGAGATTTGAAAGA+AGG 0.447270 3_4:+50413033 Msa0505090:CDS
AGGCTGCAATGCGCAGTTTG+CGG 0.457525 3_4:+50414880 Msa0505090:CDS
ATTGTTTAGAGTTGAGGGCT+TGG 0.457835 3_4:+50414233 Msa0505090:CDS
GGATGGATTCTATACGATAC+TGG 0.458073 3_4:+50414951 Msa0505090:CDS
CCACAAAGCATTGCATTCAA+TGG 0.458652 3_4:-50413311 None:intergenic
TATAAAGAGATTCATACCTC+TGG 0.467553 3_4:+50416438 Msa0505090:three_prime_UTR
GAAAACAACAGCGATGTTGT+TGG 0.467904 3_4:+50413781 Msa0505090:CDS
CTGCTGCTCTGTATCTATAA+GGG 0.468604 3_4:-50415526 None:intergenic
GCTAATTACATAACTTTACA+TGG 0.469791 3_4:+50414322 Msa0505090:CDS
TAGAGCTTTGTTAACCATAG+AGG 0.473166 3_4:+50414300 Msa0505090:CDS
GCCCTCAACTCTAAACAATC+AGG 0.478669 3_4:-50414229 None:intergenic
AGAAGAATCAGGCTGATTGT+TGG 0.481618 3_4:+50414395 Msa0505090:CDS
AGGTTGATTGGTTTAAGGTA+AGG 0.483748 3_4:-50412825 None:intergenic
TGTAACTTGTATAACTGATC+AGG 0.484904 3_4:-50412182 None:intergenic
CACAAGAGCTCATCAAGGTC+TGG 0.485931 3_4:+50415328 Msa0505090:CDS
TCCGTATAAATATAGAGCAT+TGG 0.486476 3_4:+50414135 Msa0505090:CDS
TGCCACTTTCTGAGCATAGC+AGG 0.489263 3_4:+50412155 Msa0505090:five_prime_UTR
TAACATGGGGAGTATTTATG+TGG 0.495928 3_4:+50415247 Msa0505090:CDS
GATACTTATTGAGTATGGAT+TGG 0.496423 3_4:+50413562 Msa0505090:CDS
AGAGGCTAATTTATGAAGGA+TGG 0.497913 3_4:+50414934 Msa0505090:CDS
GGCCATGTATATTCTATAGC+AGG 0.500619 3_4:+50413932 Msa0505090:CDS
TCTCCTGCATTGAGGTGGAA+TGG 0.502258 3_4:-50414914 None:intergenic
CCATTGAATGCAATGCTTTG+TGG 0.503790 3_4:+50413311 Msa0505090:CDS
CAGATGCTAGAGAATGAGCC+TGG 0.507226 3_4:+50414478 Msa0505090:CDS
GACAATGCTGATTGAGAAAG+CGG 0.508703 3_4:+50415400 Msa0505090:CDS
GAGCGAGCATTGTACAATAT+GGG 0.509845 3_4:+50414055 Msa0505090:CDS
TGCTGCAGAGAGGTGGCAGA+AGG 0.511155 3_4:+50413820 Msa0505090:CDS
AAGAAATCAAGTGTGTAAGA+TGG 0.511301 3_4:+50413267 Msa0505090:CDS
CATCAACGGAAGACCATTGT+TGG 0.513844 3_4:-50414429 None:intergenic
AGCAGTAGAAGAACTCACTA+AGG 0.514403 3_4:+50416001 Msa0505090:CDS
CTAAAGATGCTTACCTCAAG+AGG 0.517512 3_4:-50414534 None:intergenic
CAAAGGTTGTGTTGTCTGCA+TGG 0.521375 3_4:+50413015 Msa0505090:CDS
GGTAATGGATTATGCTCAGA+AGG 0.523902 3_4:+50413374 Msa0505090:CDS
GCACAGATTAAACTGTCAAA+AGG 0.527141 3_4:+50414860 Msa0505090:intron
CCTTATAGATACAGAGCAGC+AGG 0.529866 3_4:+50415527 Msa0505090:CDS
AACAAGATTTGCAAATTCTG+AGG 0.534851 3_4:-50412757 None:intergenic
GACACAGAACAATATTGTCT+TGG 0.535289 3_4:+50412700 Msa0505090:CDS
ACTTTACATGGGAGGATCAA+AGG 0.539277 3_4:+50414334 Msa0505090:CDS
GTCTGTCGCTACTCCTCTTG+AGG 0.540305 3_4:+50414521 Msa0505090:CDS
AAACCATTCCACCTCAATGC+AGG 0.545159 3_4:+50414911 Msa0505090:CDS
GGTTCAATAGTGTCGGTTGA+AGG 0.545245 3_4:-50412792 None:intergenic
GGTATGTCCTTAAAGGATCA+AGG 0.546574 3_4:-50415505 None:intergenic
TTTGCAGGCATTGAATAACA+TGG 0.549951 3_4:+50415232 Msa0505090:intron
GTTTATAGTATCAAATATGG+AGG 0.553533 3_4:+50416266 Msa0505090:three_prime_UTR
TTGCAGGCATTGAATAACAT+GGG 0.554480 3_4:+50415233 Msa0505090:intron
CAGGAGAGGCTAATTTATGA+AGG 0.554998 3_4:+50414930 Msa0505090:CDS
ATCGTGACGAGGCTGTTACA+AGG 0.556551 3_4:+50414976 Msa0505090:CDS
GCATATATGACTAGTGCTGA+TGG 0.557153 3_4:+50415959 Msa0505090:intron
TCAAGTGTGGCTGCATGGGT+TGG 0.559007 3_4:-50416137 None:intergenic
CTTTGAATGAAAATAAACTT+GGG 0.562046 3_4:-50412514 None:intergenic
ATGTAATGTAACTGTACAAG+AGG 0.565524 3_4:-50416412 None:intergenic
TAAATCAAGTGTGGCTGCAT+GGG 0.565537 3_4:-50416141 None:intergenic
TATAGATGGTTCAATAGTGT+CGG 0.567468 3_4:-50412799 None:intergenic
GGTGTTTGTTCAATGGATTG+TGG 0.568555 3_4:+50413071 Msa0505090:CDS
CTGTGTCTGTTAAGGTTGTG+AGG 0.570139 3_4:-50412684 None:intergenic
AAACTCAAGAAGCTATACAT+TGG 0.574044 3_4:+50416204 Msa0505090:three_prime_UTR
CCACACTTGATTTATATCAA+AGG 0.577105 3_4:+50416150 Msa0505090:CDS
GGGAGTATTTATGTGGATTG+TGG 0.580648 3_4:+50415254 Msa0505090:CDS
GAGGAGAAGCAAATAAAGGA+AGG 0.581506 3_4:+50414166 Msa0505090:CDS
TGGATGAATCAGGAGAAAGA+TGG 0.581728 3_4:+50416224 Msa0505090:three_prime_UTR
CACCTGCTATAGAATATACA+TGG 0.582028 3_4:-50413934 None:intergenic
GAATTCGCTTCATAATTCAA+AGG 0.583357 3_4:+50413643 Msa0505090:CDS
GTGTGTTTGTTTGTCTGATG+AGG 0.586309 3_4:+50413214 Msa0505090:CDS
AGAATACTGTGATCGTGAGA+TGG 0.587940 3_4:+50415454 Msa0505090:CDS
GCGACAGACGAAACTCTAGC+AGG 0.588210 3_4:-50414507 None:intergenic
TCTTGATACATCCAACCGAC+TGG 0.590177 3_4:-50414034 None:intergenic
ACAATAGTATGTATATACAT+TGG 0.593778 3_4:+50416318 Msa0505090:three_prime_UTR
TCGAGTATAAACCAGTCGGT+TGG 0.595194 3_4:+50414023 Msa0505090:CDS
TGTATATTCTATAGCAGGTG+TGG 0.597303 3_4:+50413937 Msa0505090:CDS
TGGTCTTCCGTTGATGATGT+TGG 0.597719 3_4:+50414436 Msa0505090:CDS
AATGATGAATGATCTGAACT+TGG 0.598053 3_4:-50412353 None:intergenic
TAGAAATGCGCGATTGAACG+CGG 0.599502 3_4:+50412980 Msa0505090:CDS
TCGTGACGAGGCTGTTACAA+GGG 0.600278 3_4:+50414977 Msa0505090:CDS
TAGCCTCTCCTGCATTGAGG+TGG 0.600521 3_4:-50414919 None:intergenic
TTGAATGCAATGCTTTGTGG+TGG 0.602718 3_4:+50413314 Msa0505090:CDS
AATTAGCCTCTCCTGCATTG+AGG 0.603715 3_4:-50414922 None:intergenic
CCTTTGCGAAGTCCGTCTGA+AGG 0.604404 3_4:-50415131 None:intergenic
GGTGGCAATGGAAGAAAGCA+TGG 0.605072 3_4:+50413754 Msa0505090:CDS
GGATGCAATTATACCAACAA+TGG 0.606647 3_4:+50414416 Msa0505090:CDS
ATAAATCAAGTGTGGCTGCA+TGG 0.607359 3_4:-50416142 None:intergenic
AACCTGCTATGCTCAGAAAG+TGG 0.607602 3_4:-50412157 None:intergenic
TGGTAAAATAGAACTTGCAA+AGG 0.609009 3_4:+50415274 Msa0505090:CDS
GTTTGTTCAATGGATTGTGG+TGG 0.609723 3_4:+50413074 Msa0505090:CDS
TAGAGCATTGGAGAAAGTCG+AGG 0.609855 3_4:+50414147 Msa0505090:CDS
ATGGTTGAGATTTGAAAGAA+GGG 0.611827 3_4:+50413034 Msa0505090:CDS
ATTACATAACTTTACATGGG+AGG 0.612020 3_4:+50414326 Msa0505090:CDS
AGAAGGGATGATGAACTTGT+TGG 0.612740 3_4:+50413050 Msa0505090:CDS
CTTTAGCAGAACTCTATCAA+AGG 0.615791 3_4:+50412856 Msa0505090:CDS
GATTTCTAGAATCCAAAATG+TGG 0.618681 3_4:+50413336 Msa0505090:CDS
TGCAGGCATTGAATAACATG+GGG 0.620435 3_4:+50415234 Msa0505090:intron
TTTGAATGAAAATAAACTTG+GGG 0.625471 3_4:-50412513 None:intergenic
CTAATTACATAACTTTACAT+GGG 0.634474 3_4:+50414323 Msa0505090:CDS
ACATTGGTATATATATCATG+TGG 0.634650 3_4:+50416334 Msa0505090:three_prime_UTR
CAAAGAACCAACATCATCAA+CGG 0.639146 3_4:-50414443 None:intergenic
AGGCACACAAGAGCTCATCA+AGG 0.640321 3_4:+50415323 Msa0505090:CDS
GCACTTAAATGTCCTTCAGA+CGG 0.641860 3_4:+50415119 Msa0505090:CDS
GGTCTAGCATTGCATCAACT+AGG 0.648853 3_4:+50413842 Msa0505090:CDS
GCTGCAGAGAGGTGGCAGAA+GGG 0.651712 3_4:+50413821 Msa0505090:CDS
CGCGGAAGATGTGATGTCAA+AGG 0.653078 3_4:+50412998 Msa0505090:CDS
GAAAGCGGAGAGTAATGCCT+CGG 0.653499 3_4:+50415415 Msa0505090:CDS
CCTTCAGACGGACTTCGCAA+AGG 0.656665 3_4:+50415131 Msa0505090:CDS
TTATACGGAAAAGAAAGCGA+AGG 0.657585 3_4:-50414121 None:intergenic
CGATACTGGCTATCGTGACG+AGG 0.657764 3_4:+50414965 Msa0505090:CDS
AAGAGTGTGCTGCAGAGAGG+TGG 0.657914 3_4:+50413813 Msa0505090:CDS
ATTCCACCTCAATGCAGGAG+AGG 0.663137 3_4:+50414916 Msa0505090:CDS
TGTCACTTTCTCAGTCTGTG+TGG 0.663683 3_4:-50412892 None:intergenic
AGGAGAAGCAAATAAAGGAA+GGG 0.664981 3_4:+50414167 Msa0505090:CDS
GTAATGGATTATGCTCAGAA+GGG 0.673024 3_4:+50413375 Msa0505090:CDS
CCTTTGATATAAATCAAGTG+TGG 0.677348 3_4:-50416150 None:intergenic
CTGTGATCGTGAGATGGCGA+AGG 0.680984 3_4:+50415460 Msa0505090:CDS
TATGCATTGTAGGAAACCAG+AGG 0.694031 3_4:-50416454 None:intergenic
GCTAGAACAAAGCATAAACA+AGG 0.694172 3_4:+50413959 Msa0505090:CDS
TGATCGTTTCTCATACGCCG+AGG 0.694270 3_4:-50415432 None:intergenic
TCCCATTGACTCGTAAAACG+CGG 0.712479 3_4:-50416066 None:intergenic
ATATTCGAGTATAAACCAGT+CGG 0.714478 3_4:+50414019 Msa0505090:CDS
GTTCTGCTAAAGTCTCAACA+AGG 0.716421 3_4:-50412845 None:intergenic
TGAAAGAGTGTGCTGCAGAG+AGG 0.724764 3_4:+50413810 Msa0505090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAAATTTTATGTAAATA+AGG + chr3_4:50415746-50415765 Msa0505090:intron 10.0%
!!! AATGTAATAATGTATGTTTT+TGG - chr3_4:50412285-50412304 None:intergenic 15.0%
!!! TGATAAACGATTATTTTATA+AGG - chr3_4:50415644-50415663 None:intergenic 15.0%
!! TTTGTTTATAGTATCAAATA+TGG + chr3_4:50416263-50416282 Msa0505090:three_prime_UTR 15.0%
!! CAAAGAATGATATGAAAAAT+TGG - chr3_4:50412259-50412278 None:intergenic 20.0%
!! TTTGAATGAAAATAAACTTG+GGG - chr3_4:50412516-50412535 None:intergenic 20.0%
!! CTTTGAATGAAAATAAACTT+GGG - chr3_4:50412517-50412536 None:intergenic 20.0%
!! ACTTTGAATGAAAATAAACT+TGG - chr3_4:50412518-50412537 None:intergenic 20.0%
!!! AAAATCAATTTTCCACATTT+TGG - chr3_4:50413351-50413370 None:intergenic 20.0%
!!! AAAATTGATTTTTCAGGTAA+TGG + chr3_4:50413359-50413378 Msa0505090:CDS 20.0%
!! ATTAACTTATAAGCTGAATA+TGG - chr3_4:50413989-50414008 None:intergenic 20.0%
!! CTAATTACATAACTTTACAT+GGG + chr3_4:50414323-50414342 Msa0505090:CDS 20.0%
!! AAATGATTTCTGAATTTCAA+TGG - chr3_4:50415012-50415031 None:intergenic 20.0%
!! TAATAAATCAAAGAACAGAT+AGG - chr3_4:50415575-50415594 None:intergenic 20.0%
!! ACAATAGTATGTATATACAT+TGG + chr3_4:50416318-50416337 Msa0505090:three_prime_UTR 20.0%
!! AATATGAACCTTTGAGAAAA+GGG - chr3_4:50412488-50412507 None:intergenic 25.0%
!! AAATATGAACCTTTGAGAAA+AGG - chr3_4:50412489-50412508 None:intergenic 25.0%
! CAAAGAAGAATTTGGAAAAT+GGG + chr3_4:50413117-50413136 Msa0505090:CDS 25.0%
! CAGTGATCATTAATTGAAAA+AGG - chr3_4:50413149-50413168 None:intergenic 25.0%
!!! ATGTGGAAAATTGATTTTTC+AGG + chr3_4:50413353-50413372 Msa0505090:CDS 25.0%
! TTTGAATTATGAAGCGAATT+CGG - chr3_4:50413644-50413663 None:intergenic 25.0%
!!! TTTATGTAGTTTTGAGTCAA+AGG + chr3_4:50413676-50413695 Msa0505090:CDS 25.0%
! AAGGAAAAGTTGGAAAATTT+AGG + chr3_4:50413695-50413714 Msa0505090:CDS 25.0%
! AGGAAAAGTTGGAAAATTTA+GGG + chr3_4:50413696-50413715 Msa0505090:CDS 25.0%
!!! TTCTTGTTGTACTATTTTCT+CGG + chr3_4:50413728-50413747 Msa0505090:CDS 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + chr3_4:50414078-50414097 Msa0505090:CDS 25.0%
! TCCAATGCTCTATATTTATA+CGG - chr3_4:50414139-50414158 None:intergenic 25.0%
! GCTAATTACATAACTTTACA+TGG + chr3_4:50414322-50414341 Msa0505090:CDS 25.0%
! TAGGTCAAAATTGAAAGATT+AGG - chr3_4:50414585-50414604 None:intergenic 25.0%
! ATAACATAAGAAGAAGATTC+AGG - chr3_4:50415083-50415102 None:intergenic 25.0%
! CTACAACAAAAGATAAAAGA+AGG + chr3_4:50415678-50415697 Msa0505090:intron 25.0%
! GTTTATAGTATCAAATATGG+AGG + chr3_4:50416266-50416285 Msa0505090:three_prime_UTR 25.0%
! ACATTGGTATATATATCATG+TGG + chr3_4:50416334-50416353 Msa0505090:three_prime_UTR 25.0%
! TGTAACTTGTATAACTGATC+AGG - chr3_4:50412185-50412204 None:intergenic 30.0%
AATGATGAATGATCTGAACT+TGG - chr3_4:50412356-50412375 None:intergenic 30.0%
!!! AGCAATAAAAGTGCTTTTAC+AGG - chr3_4:50412382-50412401 None:intergenic 30.0%
! ACTTTTATTGCTAGAAAGAG+AGG + chr3_4:50412390-50412409 Msa0505090:five_prime_UTR 30.0%
! AATGAAAACCCTTTTCTCAA+AGG + chr3_4:50412477-50412496 Msa0505090:five_prime_UTR 30.0%
! AGTTCAACACTTTAGCTTAA+AGG + chr3_4:50412535-50412554 Msa0505090:five_prime_UTR 30.0%
! GTTCAACACTTTAGCTTAAA+GGG + chr3_4:50412536-50412555 Msa0505090:five_prime_UTR 30.0%
! AGTTCTTCATCTGAAACTAA+TGG + chr3_4:50412645-50412664 Msa0505090:CDS 30.0%
ATATTGTTCTGTGTCTGTTA+AGG - chr3_4:50412695-50412714 None:intergenic 30.0%
AACAAGATTTGCAAATTCTG+AGG - chr3_4:50412760-50412779 None:intergenic 30.0%
TATAGATGGTTCAATAGTGT+CGG - chr3_4:50412802-50412821 None:intergenic 30.0%
TTAAGGTAAGGTTCTATAGA+TGG - chr3_4:50412816-50412835 None:intergenic 30.0%
! GAACTTTTCTCTGTTTTGTA+TGG + chr3_4:50412924-50412943 Msa0505090:CDS 30.0%
ATGGTTGAGATTTGAAAGAA+GGG + chr3_4:50413034-50413053 Msa0505090:CDS 30.0%
TGAATGTCCAAAGAAGAATT+TGG + chr3_4:50413109-50413128 Msa0505090:CDS 30.0%
! CCATTTTCCAAATTCTTCTT+TGG - chr3_4:50413119-50413138 None:intergenic 30.0%
CCAAAGAAGAATTTGGAAAA+TGG + chr3_4:50413116-50413135 Msa0505090:CDS 30.0%
!!! AGTGATGTTTTGTTTTGTGT+TGG + chr3_4:50413239-50413258 Msa0505090:CDS 30.0%
!!! GTGATGTTTTGTTTTGTGTT+GGG + chr3_4:50413240-50413259 Msa0505090:CDS 30.0%
AAGAAATCAAGTGTGTAAGA+TGG + chr3_4:50413267-50413286 Msa0505090:CDS 30.0%
!! GATTTCTAGAATCCAAAATG+TGG + chr3_4:50413336-50413355 Msa0505090:CDS 30.0%
!! AGAAGCTCTAAAACAGTATT+AGG - chr3_4:50413452-50413471 None:intergenic 30.0%
ATCTTCATGTGATTCTCATT+TGG + chr3_4:50413508-50413527 Msa0505090:CDS 30.0%
! GCATTGATACTTATTGAGTA+TGG + chr3_4:50413557-50413576 Msa0505090:CDS 30.0%
GATACTTATTGAGTATGGAT+TGG + chr3_4:50413562-50413581 Msa0505090:CDS 30.0%
! TTGCTTGCAAATTTTTCTCA+GGG + chr3_4:50413613-50413632 Msa0505090:CDS 30.0%
GAATTCGCTTCATAATTCAA+AGG + chr3_4:50413643-50413662 Msa0505090:CDS 30.0%
!! TTTTGAGTCAAAGGAAAAGT+TGG + chr3_4:50413685-50413704 Msa0505090:CDS 30.0%
ATATTCGAGTATAAACCAGT+CGG + chr3_4:50414019-50414038 Msa0505090:CDS 30.0%
TACAATATGGGAAGAGAAAA+AGG + chr3_4:50414067-50414086 Msa0505090:CDS 30.0%
TCCGTATAAATATAGAGCAT+TGG + chr3_4:50414135-50414154 Msa0505090:CDS 30.0%
ATGGAGTTAGATAAGTTTCT+AGG + chr3_4:50414193-50414212 Msa0505090:CDS 30.0%
! AGTTATGTAATTAGCCTCTA+TGG - chr3_4:50414317-50414336 None:intergenic 30.0%
ATTACATAACTTTACATGGG+AGG + chr3_4:50414326-50414345 Msa0505090:CDS 30.0%
TAGAATTCAGAAGAAGAATC+AGG + chr3_4:50414384-50414403 Msa0505090:CDS 30.0%
!! CACATATGCTTTTAGGAAAA+AGG - chr3_4:50415039-50415058 None:intergenic 30.0%
TGGTAAAATAGAACTTGCAA+AGG + chr3_4:50415274-50415293 Msa0505090:CDS 30.0%
ATTATTGTAGACCTAGAATC+AGG + chr3_4:50415591-50415610 Msa0505090:intron 30.0%
!! AACTGAGTTTTGTCTAAACA+GGG - chr3_4:50415617-50415636 None:intergenic 30.0%
!! TAACTGAGTTTTGTCTAAAC+AGG - chr3_4:50415618-50415637 None:intergenic 30.0%
TCATTATCTGAGAGACTATT+TGG - chr3_4:50415871-50415890 None:intergenic 30.0%
CCTTTGATATAAATCAAGTG+TGG - chr3_4:50416153-50416172 None:intergenic 30.0%
CCACACTTGATTTATATCAA+AGG + chr3_4:50416150-50416169 Msa0505090:CDS 30.0%
AAACTCAAGAAGCTATACAT+TGG + chr3_4:50416204-50416223 Msa0505090:three_prime_UTR 30.0%
ATGTAATGTAACTGTACAAG+AGG - chr3_4:50416415-50416434 None:intergenic 30.0%
TATAAAGAGATTCATACCTC+TGG + chr3_4:50416438-50416457 Msa0505090:three_prime_UTR 30.0%
! ACTTTAGCTTAAAGGGTTGT+TGG + chr3_4:50412543-50412562 Msa0505090:five_prime_UTR 35.0%
TTAAAGGGTTGTTGGAAAAG+TGG + chr3_4:50412551-50412570 Msa0505090:five_prime_UTR 35.0%
GACACAGAACAATATTGTCT+TGG + chr3_4:50412700-50412719 Msa0505090:CDS 35.0%
!! AGGTTGATTGGTTTAAGGTA+AGG - chr3_4:50412828-50412847 None:intergenic 35.0%
!! CAACAAGGTTGATTGGTTTA+AGG - chr3_4:50412833-50412852 None:intergenic 35.0%
! AAAGTCTCAACAAGGTTGAT+TGG - chr3_4:50412840-50412859 None:intergenic 35.0%
CTTTAGCAGAACTCTATCAA+AGG + chr3_4:50412856-50412875 Msa0505090:CDS 35.0%
! TTCTCTGTTTTGTATGGTCT+TGG + chr3_4:50412930-50412949 Msa0505090:CDS 35.0%
CATGGTTGAGATTTGAAAGA+AGG + chr3_4:50413033-50413052 Msa0505090:CDS 35.0%
! ACTTGTTGGTGTTTGTTCAA+TGG + chr3_4:50413064-50413083 Msa0505090:CDS 35.0%
!! GTAATGGATTATGCTCAGAA+GGG + chr3_4:50413375-50413394 Msa0505090:CDS 35.0%
TTACAGCAGAACAAAAAGAC+TGG + chr3_4:50413415-50413434 Msa0505090:CDS 35.0%
! TCTCATTTGGCTTCAATTGT+TGG + chr3_4:50413521-50413540 Msa0505090:CDS 35.0%
! CTTGCTTGCAAATTTTTCTC+AGG + chr3_4:50413612-50413631 Msa0505090:CDS 35.0%
TTCGATGAAGCAGTTGAATT+AGG + chr3_4:50413911-50413930 Msa0505090:CDS 35.0%
CACCTGCTATAGAATATACA+TGG - chr3_4:50413937-50413956 None:intergenic 35.0%
TGTATATTCTATAGCAGGTG+TGG + chr3_4:50413937-50413956 Msa0505090:CDS 35.0%
GCTAGAACAAAGCATAAACA+AGG + chr3_4:50413959-50413978 Msa0505090:CDS 35.0%
TTATACGGAAAAGAAAGCGA+AGG - chr3_4:50414124-50414143 None:intergenic 35.0%
AGGAGAAGCAAATAAAGGAA+GGG + chr3_4:50414167-50414186 Msa0505090:CDS 35.0%
GCAAATAAAGGAAGGGATTA+TGG + chr3_4:50414174-50414193 Msa0505090:CDS 35.0%
! ACCTGATTGTTTAGAGTTGA+GGG + chr3_4:50414228-50414247 Msa0505090:CDS 35.0%
!! TAGAGCTTTGTTAACCATAG+AGG + chr3_4:50414300-50414319 Msa0505090:CDS 35.0%
GGATGCAATTATACCAACAA+TGG + chr3_4:50414416-50414435 Msa0505090:CDS 35.0%
CAAAGAACCAACATCATCAA+CGG - chr3_4:50414446-50414465 None:intergenic 35.0%
! AGTGCTACTGCTACATATAT+AGG - chr3_4:50414604-50414623 None:intergenic 35.0%
CGCGTGTTAGTAAATACAAT+TGG + chr3_4:50414799-50414818 Msa0505090:intron 35.0%
GCACAGATTAAACTGTCAAA+AGG + chr3_4:50414860-50414879 Msa0505090:intron 35.0%
AGAGGCTAATTTATGAAGGA+TGG + chr3_4:50414934-50414953 Msa0505090:CDS 35.0%
! CTGCTAACACATATGCTTTT+AGG - chr3_4:50415046-50415065 None:intergenic 35.0%
! TGTCTTGTGCAATATTTTGC+AGG + chr3_4:50415217-50415236 Msa0505090:intron 35.0%
!! TTTGCAGGCATTGAATAACA+TGG + chr3_4:50415232-50415251 Msa0505090:intron 35.0%
!! TTGCAGGCATTGAATAACAT+GGG + chr3_4:50415233-50415252 Msa0505090:intron 35.0%
!! TAACATGGGGAGTATTTATG+TGG + chr3_4:50415247-50415266 Msa0505090:CDS 35.0%
! CTATAAGGGTATGTCCTTAA+AGG - chr3_4:50415515-50415534 None:intergenic 35.0%
GCTTATGAACATGTTGTAAG+TGG + chr3_4:50415777-50415796 Msa0505090:intron 35.0%
ATCTGAGAGACTATTTGGAT+TGG - chr3_4:50415866-50415885 None:intergenic 35.0%
! AGATGAAGCATTTGAAGATC+TGG - chr3_4:50416041-50416060 None:intergenic 35.0%
AGCTATACATTGGATGAATC+AGG + chr3_4:50416214-50416233 Msa0505090:three_prime_UTR 35.0%
TCTGTTAAGGTTGTGAGGTT+TGG - chr3_4:50412682-50412701 None:intergenic 40.0%
GTTCTGCTAAAGTCTCAACA+AGG - chr3_4:50412848-50412867 None:intergenic 40.0%
AGAAGGGATGATGAACTTGT+TGG + chr3_4:50413050-50413069 Msa0505090:CDS 40.0%
!! GGTGTTTGTTCAATGGATTG+TGG + chr3_4:50413071-50413090 Msa0505090:CDS 40.0%
!! GTTTGTTCAATGGATTGTGG+TGG + chr3_4:50413074-50413093 Msa0505090:CDS 40.0%
GTGTGTTTGTTTGTCTGATG+AGG + chr3_4:50413214-50413233 Msa0505090:CDS 40.0%
!! CCACAAAGCATTGCATTCAA+TGG - chr3_4:50413314-50413333 None:intergenic 40.0%
CCATTGAATGCAATGCTTTG+TGG + chr3_4:50413311-50413330 Msa0505090:CDS 40.0%
TTGAATGCAATGCTTTGTGG+TGG + chr3_4:50413314-50413333 Msa0505090:CDS 40.0%
!! GGTAATGGATTATGCTCAGA+AGG + chr3_4:50413374-50413393 Msa0505090:CDS 40.0%
! AGCTTCTGTCATTTGCCAAT+AGG + chr3_4:50413465-50413484 Msa0505090:CDS 40.0%
!!! TGCCAATAGGTTTTGTTGTG+AGG + chr3_4:50413478-50413497 Msa0505090:CDS 40.0%
CTCCTCACAACAAAACCTAT+TGG - chr3_4:50413483-50413502 None:intergenic 40.0%
GAAAACAACAGCGATGTTGT+TGG + chr3_4:50413781-50413800 Msa0505090:CDS 40.0%
GGCCATGTATATTCTATAGC+AGG + chr3_4:50413932-50413951 Msa0505090:CDS 40.0%
! AGAGCGAGCATTGTACAATA+TGG + chr3_4:50414054-50414073 Msa0505090:CDS 40.0%
! GAGCGAGCATTGTACAATAT+GGG + chr3_4:50414055-50414074 Msa0505090:CDS 40.0%
AGTCGAGGAGAAGCAAATAA+AGG + chr3_4:50414162-50414181 Msa0505090:CDS 40.0%
GAGGAGAAGCAAATAAAGGA+AGG + chr3_4:50414166-50414185 Msa0505090:CDS 40.0%
! CACCTGATTGTTTAGAGTTG+AGG + chr3_4:50414227-50414246 Msa0505090:CDS 40.0%
! ATTGTTTAGAGTTGAGGGCT+TGG + chr3_4:50414233-50414252 Msa0505090:CDS 40.0%
ACTTTACATGGGAGGATCAA+AGG + chr3_4:50414334-50414353 Msa0505090:CDS 40.0%
GAGGATCAAAGGTGAATGTT+TGG + chr3_4:50414345-50414364 Msa0505090:CDS 40.0%
AGAAGAATCAGGCTGATTGT+TGG + chr3_4:50414395-50414414 Msa0505090:CDS 40.0%
!! CGTTGATGATGTTGGTTCTT+TGG + chr3_4:50414444-50414463 Msa0505090:CDS 40.0%
CTAAAGATGCTTACCTCAAG+AGG - chr3_4:50414537-50414556 None:intergenic 40.0%
CTATGTGTGAGTATCATGTC+TGG + chr3_4:50414725-50414744 Msa0505090:intron 40.0%
CAGGAGAGGCTAATTTATGA+AGG + chr3_4:50414930-50414949 Msa0505090:CDS 40.0%
! GGATGGATTCTATACGATAC+TGG + chr3_4:50414951-50414970 Msa0505090:CDS 40.0%
GCACTTAAATGTCCTTCAGA+CGG + chr3_4:50415119-50415138 Msa0505090:CDS 40.0%
!! TGCAGGCATTGAATAACATG+GGG + chr3_4:50415234-50415253 Msa0505090:intron 40.0%
!! GGGAGTATTTATGTGGATTG+TGG + chr3_4:50415254-50415273 Msa0505090:CDS 40.0%
ACAACAATGCACTTGCGATT+AGG + chr3_4:50415303-50415322 Msa0505090:CDS 40.0%
! GACAATGCTGATTGAGAAAG+CGG + chr3_4:50415400-50415419 Msa0505090:CDS 40.0%
AGAATACTGTGATCGTGAGA+TGG + chr3_4:50415454-50415473 Msa0505090:CDS 40.0%
CAACACACCTTGATCCTTTA+AGG + chr3_4:50415498-50415517 Msa0505090:CDS 40.0%
GGTATGTCCTTAAAGGATCA+AGG - chr3_4:50415508-50415527 None:intergenic 40.0%
CTGCTGCTCTGTATCTATAA+GGG - chr3_4:50415529-50415548 None:intergenic 40.0%
! GGTTCAACTGTTTTCGTGTA+AGG + chr3_4:50415699-50415718 Msa0505090:intron 40.0%
AAGCAGTTGTAAGACTCTCT+AGG - chr3_4:50415817-50415836 None:intergenic 40.0%
! GCATATATGACTAGTGCTGA+TGG + chr3_4:50415959-50415978 Msa0505090:intron 40.0%
AGCAGTAGAAGAACTCACTA+AGG + chr3_4:50416001-50416020 Msa0505090:CDS 40.0%
TAAATCAAGTGTGGCTGCAT+GGG - chr3_4:50416144-50416163 None:intergenic 40.0%
ATAAATCAAGTGTGGCTGCA+TGG - chr3_4:50416145-50416164 None:intergenic 40.0%
TGGATGAATCAGGAGAAAGA+TGG + chr3_4:50416224-50416243 Msa0505090:three_prime_UTR 40.0%
CTCTCTCTCTCTCTCTCTAA+TGG + chr3_4:50412123-50412142 Msa0505090:five_prime_UTR 45.0%
AACCTGCTATGCTCAGAAAG+TGG - chr3_4:50412160-50412179 None:intergenic 45.0%
CTGTGTCTGTTAAGGTTGTG+AGG - chr3_4:50412687-50412706 None:intergenic 45.0%
!! GGTTCAATAGTGTCGGTTGA+AGG - chr3_4:50412795-50412814 None:intergenic 45.0%
!! TGTCACTTTCTCAGTCTGTG+TGG - chr3_4:50412895-50412914 None:intergenic 45.0%
GACATCTTCTGAGTAGCTTC+TGG - chr3_4:50412959-50412978 None:intergenic 45.0%
TAGAAATGCGCGATTGAACG+CGG + chr3_4:50412980-50412999 Msa0505090:CDS 45.0%
CAAAGGTTGTGTTGTCTGCA+TGG + chr3_4:50413015-50413034 Msa0505090:CDS 45.0%
! GTTGTACTATTTTCTCGGCC+AGG + chr3_4:50413733-50413752 Msa0505090:CDS 45.0%
GGTCTAGCATTGCATCAACT+AGG + chr3_4:50413842-50413861 Msa0505090:CDS 45.0%
TCGAGTATAAACCAGTCGGT+TGG + chr3_4:50414023-50414042 Msa0505090:CDS 45.0%
TCTTGATACATCCAACCGAC+TGG - chr3_4:50414037-50414056 None:intergenic 45.0%
!! TAGAGCATTGGAGAAAGTCG+AGG + chr3_4:50414147-50414166 Msa0505090:CDS 45.0%
GCCCTCAACTCTAAACAATC+AGG - chr3_4:50414232-50414251 None:intergenic 45.0%
CATCAACGGAAGACCATTGT+TGG - chr3_4:50414432-50414451 None:intergenic 45.0%
!! TGGTCTTCCGTTGATGATGT+TGG + chr3_4:50414436-50414455 Msa0505090:CDS 45.0%
AAACCATTCCACCTCAATGC+AGG + chr3_4:50414911-50414930 Msa0505090:CDS 45.0%
! AATTAGCCTCTCCTGCATTG+AGG - chr3_4:50414925-50414944 None:intergenic 45.0%
CCTGCTGCTCTGTATCTATA+AGG - chr3_4:50415530-50415549 None:intergenic 45.0%
CCTTATAGATACAGAGCAGC+AGG + chr3_4:50415527-50415546 Msa0505090:CDS 45.0%
TCTAAACAGGGCCTGATTCT+AGG - chr3_4:50415605-50415624 None:intergenic 45.0%
! GTTGTAAGACTCTCTAGGAG+AGG - chr3_4:50415812-50415831 None:intergenic 45.0%
!! TCCCATTGACTCGTAAAACG+CGG - chr3_4:50416069-50416088 None:intergenic 45.0%
!! TGCCACTTTCTGAGCATAGC+AGG + chr3_4:50412155-50412174 Msa0505090:five_prime_UTR 50.0%
CGCGGAAGATGTGATGTCAA+AGG + chr3_4:50412998-50413017 Msa0505090:CDS 50.0%
! GTACTATTTTCTCGGCCAGG+TGG + chr3_4:50413736-50413755 Msa0505090:CDS 50.0%
TGCTTTCTTCCATTGCCACC+TGG - chr3_4:50413754-50413773 None:intergenic 50.0%
GGTGGCAATGGAAGAAAGCA+TGG + chr3_4:50413754-50413773 Msa0505090:CDS 50.0%
! TGAAAGAGTGTGCTGCAGAG+AGG + chr3_4:50413810-50413829 Msa0505090:CDS 50.0%
CAGATGCTAGAGAATGAGCC+TGG + chr3_4:50414478-50414497 Msa0505090:CDS 50.0%
AACTCTAGCAGGCTCTTTCC+AGG - chr3_4:50414499-50414518 None:intergenic 50.0%
CGACACGATTCTGACACATG+TGG + chr3_4:50414661-50414680 Msa0505090:intron 50.0%
GTGCAGCATAAGCGCATCTT+TGG - chr3_4:50414844-50414863 None:intergenic 50.0%
TCTCCTGCATTGAGGTGGAA+TGG - chr3_4:50414917-50414936 None:intergenic 50.0%
ATTCCACCTCAATGCAGGAG+AGG + chr3_4:50414916-50414935 Msa0505090:CDS 50.0%
ATCGTGACGAGGCTGTTACA+AGG + chr3_4:50414976-50414995 Msa0505090:CDS 50.0%
TCGTGACGAGGCTGTTACAA+GGG + chr3_4:50414977-50414996 Msa0505090:CDS 50.0%
AGGCACACAAGAGCTCATCA+AGG + chr3_4:50415323-50415342 Msa0505090:CDS 50.0%
CACAAGAGCTCATCAAGGTC+TGG + chr3_4:50415328-50415347 Msa0505090:CDS 50.0%
GAAAGCGGAGAGTAATGCCT+CGG + chr3_4:50415415-50415434 Msa0505090:CDS 50.0%
TGATCGTTTCTCATACGCCG+AGG - chr3_4:50415435-50415454 None:intergenic 50.0%
! AGCCGCGTTTTACGAGTCAA+TGG + chr3_4:50416064-50416083 Msa0505090:CDS 50.0%
! GCCGCGTTTTACGAGTCAAT+GGG + chr3_4:50416065-50416084 Msa0505090:CDS 50.0%
! TTTTCTCGGCCAGGTGGCAA+TGG + chr3_4:50413742-50413761 Msa0505090:CDS 55.0%
! AAGAGTGTGCTGCAGAGAGG+TGG + chr3_4:50413813-50413832 Msa0505090:CDS 55.0%
GCGACAGACGAAACTCTAGC+AGG - chr3_4:50414510-50414529 None:intergenic 55.0%
GTCTGTCGCTACTCCTCTTG+AGG + chr3_4:50414521-50414540 Msa0505090:CDS 55.0%
AGGCTGCAATGCGCAGTTTG+CGG + chr3_4:50414880-50414899 Msa0505090:CDS 55.0%
TAGCCTCTCCTGCATTGAGG+TGG - chr3_4:50414922-50414941 None:intergenic 55.0%
! CGATACTGGCTATCGTGACG+AGG + chr3_4:50414965-50414984 Msa0505090:CDS 55.0%
CCTTTGCGAAGTCCGTCTGA+AGG - chr3_4:50415134-50415153 None:intergenic 55.0%
! CCTTCAGACGGACTTCGCAA+AGG + chr3_4:50415131-50415150 Msa0505090:CDS 55.0%
CTGTGATCGTGAGATGGCGA+AGG + chr3_4:50415460-50415479 Msa0505090:CDS 55.0%
TCAAGTGTGGCTGCATGGGT+TGG - chr3_4:50416140-50416159 None:intergenic 55.0%
TGCTGCAGAGAGGTGGCAGA+AGG + chr3_4:50413820-50413839 Msa0505090:CDS 60.0%
GCTGCAGAGAGGTGGCAGAA+GGG + chr3_4:50413821-50413840 Msa0505090:CDS 60.0%
TGCAATGCGCAGTTTGCGGC+TGG + chr3_4:50414884-50414903 Msa0505090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 50412108 50416470 50412108 ID=Msa0505090;Name=Msa0505090
chr3_4 mRNA 50412108 50416470 50412108 ID=Msa0505090-mRNA-1;Parent=Msa0505090;Name=Msa0505090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=483|1|1|1|1|1|4|277|924
chr3_4 exon 50412108 50414542 50412108 ID=Msa0505090-mRNA-1:exon:10882;Parent=Msa0505090-mRNA-1
chr3_4 exon 50414866 50415157 50414866 ID=Msa0505090-mRNA-1:exon:10883;Parent=Msa0505090-mRNA-1
chr3_4 exon 50415239 50415548 50415239 ID=Msa0505090-mRNA-1:exon:10884;Parent=Msa0505090-mRNA-1
chr3_4 exon 50415973 50416470 50415973 ID=Msa0505090-mRNA-1:exon:10885;Parent=Msa0505090-mRNA-1
chr3_4 five_prime_UTR 50412108 50412590 50412108 ID=Msa0505090-mRNA-1:five_prime_utr;Parent=Msa0505090-mRNA-1
chr3_4 CDS 50412591 50414542 50412591 ID=Msa0505090-mRNA-1:cds;Parent=Msa0505090-mRNA-1
chr3_4 CDS 50414866 50415157 50414866 ID=Msa0505090-mRNA-1:cds;Parent=Msa0505090-mRNA-1
chr3_4 CDS 50415239 50415548 50415239 ID=Msa0505090-mRNA-1:cds;Parent=Msa0505090-mRNA-1
chr3_4 CDS 50415973 50416193 50415973 ID=Msa0505090-mRNA-1:cds;Parent=Msa0505090-mRNA-1
chr3_4 three_prime_UTR 50416194 50416470 50416194 ID=Msa0505090-mRNA-1:three_prime_utr;Parent=Msa0505090-mRNA-1
Gene Sequence

>Msa0505090

ATGCGTAGTTTGAAGATTGTTGAACGTTTTAAGAGTATTCAAGTTCATGCTCTTAGTTCTTCATCTGAAACTAATGGTGATAGCAAAACCAAACCTCACAACCTTAACAGACACAGAACAATATTGTCTTGGTCAAAATCAAAATTCAACAACAGTAACACAAAAACCTCAGAATTTGCAAATCTTGTTTCTCTTCAGTTACCTTCAACCGACACTATTGAACCATCTATAGAACCTTACCTTAAACCAATCAACCTTGTTGAGACTTTAGCAGAACTCTATCAAAGGATAGAGTTTTGCTCCACACAGACTGAGAAAGTGACACTTTTTGTTGAACTTTTCTCTGTTTTGTATGGTCTTGGAGACCAGAAGCTACTCAGAAGATGTCTTAGAAATGCGCGATTGAACGCGGAAGATGTGATGTCAAAGGTTGTGTTGTCTGCATGGTTGAGATTTGAAAGAAGGGATGATGAACTTGTTGGTGTTTGTTCAATGGATTGTGGTGGTTATAATATTCTTGAATGTCCAAAGAAGAATTTGGAAAATGGGTTTAGTCCTTTTTCAATTAATGATCACTGCAAGTGTGAAGAAGAGAAAAAGCATGAAAATTTTGATAATGATGAGTGTGTTTGTTTGTCTGATGAGGAAAGTGATGTTTTGTTTTGTGTTGGGATTGAAGAAATCAAGTGTGTAAGATGGAGAATTGCTTCACTTTCAGAACCATTGAATGCAATGCTTTGTGGTGGATTTCTAGAATCCAAAATGTGGAAAATTGATTTTTCAGGTAATGGATTATGCTCAGAAGGGATGAAAGCAGTTGAATTTTACAGCAGAACAAAAAGACTGGATCTTTTTTGTCCTAATACTGTTTTAGAGCTTCTGTCATTTGCCAATAGGTTTTGTTGTGAGGAGATGAAATCTTCATGTGATTCTCATTTGGCTTCAATTGTTGGAAATGTTGAAGATGCATTGATACTTATTGAGTATGGATTGGAAGAAAGTGCAAAACTTCTTGTAGTTTCTTGCTTGCAAATTTTTCTCAGGGAGCTTCCGAATTCGCTTCATAATTCAAAGGTGATAAATTTTTTATGTAGTTTTGAGTCAAAGGAAAAGTTGGAAAATTTAGGGTGTGCTACTTTCTTGTTGTACTATTTTCTCGGCCAGGTGGCAATGGAAGAAAGCATGGTATCGAAAACAACAGCGATGTTGTTGGAGAGAATGAAAGAGTGTGCTGCAGAGAGGTGGCAGAAGGGTCTAGCATTGCATCAACTAGGATGTGTGTTTCTTGAAAGAAGAGAGTATAAAGAAGCTCAACATTGTTTCGATGAAGCAGTTGAATTAGGCCATGTATATTCTATAGCAGGTGTGGCTAGAACAAAGCATAAACAAGGTCAACCATATTCAGCTTATAAGTTAATTAGTTCACTCATATTCGAGTATAAACCAGTCGGTTGGATGTATCAAGAGCGAGCATTGTACAATATGGGAAGAGAAAAAGGTTTTGATTTGGATTTTGCAACTCAACTCGATCCTTCGCTTTCTTTTCCGTATAAATATAGAGCATTGGAGAAAGTCGAGGAGAAGCAAATAAAGGAAGGGATTATGGAGTTAGATAAGTTTCTAGGATTTAAGCTTTCACCTGATTGTTTAGAGTTGAGGGCTTGGTTGTATATTGCATTAGATGATTATGATAGTGCTATAAGAGATATTAGAGCTTTGTTAACCATAGAGGCTAATTACATAACTTTACATGGGAGGATCAAAGGTGAATGTTTGGTTCAAATTCTTCAAAGTAGAATTCAGAAGAAGAATCAGGCTGATTGTTGGATGCAATTATACCAACAATGGTCTTCCGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTGGAAAGAGCCTGCTAGAGTTTCGTCTGTCGCTACTCCTCTTGAGATTAAACTGTCAAAAGGCTGCAATGCGCAGTTTGCGGCTGGCAAGAAACCATTCCACCTCAATGCAGGAGAGGCTAATTTATGAAGGATGGATTCTATACGATACTGGCTATCGTGACGAGGCTGTTACAAGGGCTGACAAATCCATTGAAATTCAGAAATCATTTGAAGCCTTTTTCCTAAAAGCATATGTGTTAGCAGATACAAATCTTGATCCTGAATCTTCTTCTTATGTTATTCAGCTTTTGAAAGAAGCACTTAAATGTCCTTCAGACGGACTTCGCAAAGGACAAGCATTGAATAACATGGGGAGTATTTATGTGGATTGTGGTAAAATAGAACTTGCAAAGGAATGCTACAACAATGCACTTGCGATTAGGCACACAAGAGCTCATCAAGGTCTGGCGCGTGTTTATCATCAGAAAAATCAACGAAAGACTGCATACGATGAAATGACAATGCTGATTGAGAAAGCGGAGAGTAATGCCTCGGCGTATGAGAAACGATCAGAATACTGTGATCGTGAGATGGCGAAGGCTGATCTTGATGTTGCAACACACCTTGATCCTTTAAGGACATACCCTTATAGATACAGAGCAGCAGTGCTGATGGATGAGCAAAAAGAAACAGAAGCAGTAGAAGAACTCACTAAGGCTATAAAATTCAAGCCAGATCTTCAAATGCTTCATCTACGAGCCGCGTTTTACGAGTCAATGGGAGATCTATTTTCTGCTCTTAAAGATTGTCAAGCTGCTCTTTGTTTAGATCCAACCCATGCAGCCACACTTGATTTATATCAAAGGATACAAAAGCTGAACTTTTGA
Protein sequence

>Msa0505090

MRSLKIVERFKSIQVHALSSSSETNGDSKTKPHNLNRHRTILSWSKSKFNNSNTKTSEFANLVSLQLPSTDTIEPSIEPYLKPINLVETLAELYQRIEFCSTQTEKVTLFVELFSVLYGLGDQKLLRRCLRNARLNAEDVMSKVVLSAWLRFERRDDELVGVCSMDCGGYNILECPKKNLENGFSPFSINDHCKCEEEKKHENFDNDECVCLSDEESDVLFCVGIEEIKCVRWRIASLSEPLNAMLCGGFLESKMWKIDFSGNGLCSEGMKAVEFYSRTKRLDLFCPNTVLELLSFANRFCCEEMKSSCDSHLASIVGNVEDALILIEYGLEESAKLLVVSCLQIFLRELPNSLHNSKVINFLCSFESKEKLENLGCATFLLYYFLGQVAMEESMVSKTTAMLLERMKECAAERWQKGLALHQLGCVFLERREYKEAQHCFDEAVELGHVYSIAGVARTKHKQGQPYSAYKLISSLIFEYKPVGWMYQERALYNMGREKGFDLDFATQLDPSLSFPYKYRALEKVEEKQIKEGIMELDKFLGFKLSPDCLELRAWLYIALDDYDSAIRDIRALLTIEANYITLHGRIKGECLVQILQSRIQKKNQADCWMQLYQQWSSVDDVGSLAIIHQMLENEPGKSLLEFRLSLLLLRLNCQKAAMRSLRLARNHSTSMQERLIYEGWILYDTGYRDEAVTRADKSIEIQKSFEAFFLKAYVLADTNLDPESSSYVIQLLKEALKCPSDGLRKGQALNNMGSIYVDCGKIELAKECYNNALAIRHTRAHQGLARVYHQKNQRKTAYDEMTMLIEKAESNASAYEKRSEYCDREMAKADLDVATHLDPLRTYPYRYRAAVLMDEQKETEAVEELTKAIKFKPDLQMLHLRAAFYESMGDLFSALKDCQAALCLDPTHAATLDLYQRIQKLNF*