Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506250 | XP_004500366.1 | 62.721 | 566 | 135 | 8 | 1 | 491 | 16 | 580 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506250 | sp|Q4F883|SG101_ARATH | 37.899 | 533 | 269 | 19 | 1 | 484 | 15 | 534 | 2.65e-98 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506250 | A0A1S2Y842 | 62.721 | 566 | 135 | 8 | 1 | 491 | 16 | 580 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0414630 | Msa0506250 | 0.846910 | 1.613879e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506250 | MtrunA17_Chr3g0107671 | 62.191 | 566 | 133 | 10 | 1 | 491 | 16 | 575 | 0.0 | 666 |
| Msa0506250 | MtrunA17_Chr6g0451531 | 58.657 | 566 | 153 | 9 | 1 | 491 | 18 | 577 | 0.0 | 631 |
| Msa0506250 | MtrunA17_Chr6g0451561 | 54.261 | 575 | 164 | 13 | 1 | 491 | 16 | 575 | 0.0 | 558 |
| Msa0506250 | MtrunA17_Chr6g0451541 | 65.060 | 249 | 87 | 0 | 243 | 491 | 330 | 578 | 4.67e-116 | 353 |
| Msa0506250 | MtrunA17_Chr6g0451541 | 64.173 | 254 | 77 | 6 | 1 | 246 | 18 | 265 | 6.68e-96 | 301 |
| Msa0506250 | MtrunA17_Chr6g0451511 | 57.143 | 252 | 102 | 4 | 243 | 490 | 327 | 576 | 2.65e-96 | 302 |
| Msa0506250 | MtrunA17_Chr6g0451511 | 52.157 | 255 | 102 | 9 | 2 | 246 | 17 | 261 | 1.34e-64 | 219 |
| Msa0506250 | MtrunA17_Chr3g0107661 | 70.879 | 182 | 46 | 4 | 2 | 180 | 17 | 194 | 1.73e-79 | 248 |
| Msa0506250 | MtrunA17_Chr3g0107651 | 76.404 | 89 | 21 | 0 | 243 | 331 | 48 | 136 | 1.39e-45 | 155 |
| Msa0506250 | MtrunA17_Chr8g0384621 | 30.594 | 219 | 125 | 7 | 261 | 462 | 403 | 611 | 1.23e-20 | 95.1 |
| Msa0506250 | MtrunA17_Chr8g0384621 | 39.496 | 119 | 57 | 7 | 93 | 204 | 111 | 221 | 3.27e-12 | 68.9 |
| Msa0506250 | MtrunA17_Chr3g0118251 | 28.700 | 223 | 126 | 8 | 241 | 455 | 402 | 599 | 1.96e-17 | 85.1 |
| Msa0506250 | MtrunA17_Chr3g0118541 | 28.054 | 221 | 129 | 8 | 260 | 470 | 423 | 623 | 4.40e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506250 | AT5G14930.2 | 37.899 | 533 | 269 | 19 | 1 | 484 | 15 | 534 | 2.69e-99 | 309 |
| Msa0506250 | AT3G52430.1 | 25.858 | 437 | 238 | 12 | 101 | 462 | 95 | 520 | 1.91e-33 | 133 |
| Msa0506250 | AT5G14930.3 | 38.813 | 219 | 115 | 7 | 1 | 208 | 15 | 225 | 2.10e-33 | 127 |
| Msa0506250 | AT3G48080.1 | 27.778 | 216 | 126 | 7 | 263 | 456 | 397 | 604 | 1.28e-11 | 67.4 |
Find 105 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACCATTATAGCATTTA+AGG | 0.089703 | 3_4:-52503561 | Msa0506250:CDS |
| CTTCATATGTTTCCTTTCTT+TGG | 0.160648 | 3_4:-52501152 | Msa0506250:three_prime_UTR |
| TGACTATTGATTCTTGCTTT+TGG | 0.178152 | 3_4:-52501458 | Msa0506250:CDS |
| CCATCTCACGTAGTTCTATT+TGG | 0.188598 | 3_4:-52502728 | Msa0506250:CDS |
| CCTTCAACTCTTTGCATAAA+AGG | 0.215247 | 3_4:+52501415 | None:intergenic |
| GAACGAGTATAAAGAGATTA+AGG | 0.220266 | 3_4:-52501265 | Msa0506250:CDS |
| CTTCATTTCATTCAATTTCC+TGG | 0.264184 | 3_4:+52501881 | None:intergenic |
| GGACCTGAAACTATTGATTA+TGG | 0.274388 | 3_4:-52502519 | Msa0506250:CDS |
| GAATTTGAGGTGTATGCTTA+TGG | 0.275077 | 3_4:-52501354 | Msa0506250:CDS |
| CGGACGCCGTTGATTGTTAC+TGG | 0.281265 | 3_4:-52502882 | Msa0506250:CDS |
| GAGAAAATCGCTTCAAATAA+AGG | 0.304846 | 3_4:-52500927 | Msa0506250:three_prime_UTR |
| ACCAGTACCTATATGCCTTT+TGG | 0.305241 | 3_4:-52502639 | Msa0506250:CDS |
| TTTCCATAATCAATAGTTTC+AGG | 0.315617 | 3_4:+52502516 | None:intergenic |
| CAGTGTGTCTTCTCTCTCAT+TGG | 0.316140 | 3_4:+52501389 | None:intergenic |
| CAGTACAAGTACAAAGAATA+TGG | 0.321950 | 3_4:-52501490 | Msa0506250:CDS |
| AAAGGAAACATATGAAGTTC+AGG | 0.322804 | 3_4:+52501158 | None:intergenic |
| GATTTCTTCTTCTGAACTTA+AGG | 0.324062 | 3_4:-52503504 | Msa0506250:CDS |
| GATAGATTAGGATGATTATA+TGG | 0.335612 | 3_4:-52501126 | Msa0506250:three_prime_UTR |
| AGTAACTGGTGAGCTTCTTA+TGG | 0.336614 | 3_4:+52501745 | None:intergenic |
| ACGATGGTGTTGGACTTTCT+TGG | 0.337988 | 3_4:-52503610 | Msa0506250:CDS |
| ATAAGAAGCTCACCAGTTAC+TGG | 0.352381 | 3_4:-52501743 | Msa0506250:CDS |
| TATATGGCGGGACTACTTAC+AGG | 0.354454 | 3_4:-52501653 | Msa0506250:CDS |
| ATTGTTACTGGGCATGGTCT+TGG | 0.355599 | 3_4:-52502870 | Msa0506250:CDS |
| CGTCCACTCTGCATCACCTT+TGG | 0.363380 | 3_4:-52502786 | Msa0506250:CDS |
| TTTCGTACCCGTTGGCTATA+TGG | 0.369681 | 3_4:-52501669 | Msa0506250:CDS |
| ACCTTTGGTTCACCCCTTGT+TGG | 0.372203 | 3_4:-52502771 | Msa0506250:CDS |
| AACTATCTTCTCCCAGTAAC+TGG | 0.372992 | 3_4:+52501731 | None:intergenic |
| TTTCTTTGGTTTGATAGATT+AGG | 0.374725 | 3_4:-52501138 | Msa0506250:three_prime_UTR |
| TGAGAATGCAGAATCTATCT+TGG | 0.379413 | 3_4:-52502583 | Msa0506250:CDS |
| GAAGAAATTGTTTGAATTTG+AGG | 0.385810 | 3_4:-52501367 | Msa0506250:CDS |
| CTCCAACTGGTTGAAGTGTC+TGG | 0.400156 | 3_4:+52501557 | None:intergenic |
| CCATCAACCACTTCTCCAAC+TGG | 0.406981 | 3_4:+52501544 | None:intergenic |
| TGCAGCCTTAAATGCTATAA+TGG | 0.407236 | 3_4:+52503556 | None:intergenic |
| GTTCACCCCTTGTTGGAGAT+AGG | 0.416824 | 3_4:-52502764 | Msa0506250:CDS |
| CTTCTTGTACCATTCAAGTT+GGG | 0.422683 | 3_4:+52501848 | None:intergenic |
| TCAGAAGAAGAAATCAAATC+AGG | 0.424430 | 3_4:+52503512 | None:intergenic |
| ATTTCATTCAATTTCCTGGT+TGG | 0.428351 | 3_4:+52501885 | None:intergenic |
| GTTACTGGGCATGGTCTTGG+AGG | 0.436822 | 3_4:-52502867 | Msa0506250:CDS |
| AAATGTTCCAAAAGGCATAT+AGG | 0.444177 | 3_4:+52502632 | None:intergenic |
| CCAGTTGGAGAAGTGGTTGA+TGG | 0.446006 | 3_4:-52501544 | Msa0506250:CDS |
| TCTTCTTGTACCATTCAAGT+TGG | 0.471832 | 3_4:+52501847 | None:intergenic |
| CTAGTATACTTTGTAAGTCA+TGG | 0.476826 | 3_4:-52503676 | Msa0506250:CDS |
| AAGACTATGTTAATAAGAAA+AGG | 0.477940 | 3_4:-52501581 | Msa0506250:CDS |
| AGATTCTGCATTCTCAAAAG+AGG | 0.481140 | 3_4:+52502590 | None:intergenic |
| TGAACAACATCATGGTCAAA+TGG | 0.481274 | 3_4:+52501771 | None:intergenic |
| GAGCAATTCATTGATTGAAG+TGG | 0.485194 | 3_4:-52501097 | Msa0506250:three_prime_UTR |
| AACGAGTATAAAGAGATTAA+GGG | 0.487205 | 3_4:-52501264 | Msa0506250:CDS |
| CCGTTGATTGTTACTGGGCA+TGG | 0.487392 | 3_4:-52502876 | Msa0506250:CDS |
| TGGAATTGAGCTTGCATCAA+TGG | 0.495486 | 3_4:-52503708 | Msa0506250:exon |
| GTAATGAAGCGCCTTGGAAG+TGG | 0.498921 | 3_4:+52502669 | None:intergenic |
| CAGGAAATTGAATGAAATGA+AGG | 0.498926 | 3_4:-52501880 | Msa0506250:CDS |
| AAGGAAACATATGAAGTTCA+GGG | 0.508121 | 3_4:+52501159 | None:intergenic |
| TCCAAAAGGCATATAGGTAC+TGG | 0.510716 | 3_4:+52502638 | None:intergenic |
| GGACGCCGTTGATTGTTACT+GGG | 0.515744 | 3_4:-52502881 | Msa0506250:CDS |
| CACAAAGCAGCTATATTCGT+TGG | 0.519667 | 3_4:-52501290 | Msa0506250:CDS |
| AAAATTGAGAAGTATGCTAC+AGG | 0.520879 | 3_4:-52501195 | Msa0506250:CDS |
| AAACTAAGAATCAGCAAGTA+GGG | 0.524900 | 3_4:-52501824 | Msa0506250:CDS |
| TATGGAATTGAACAACATCA+TGG | 0.528816 | 3_4:+52501763 | None:intergenic |
| TGTACTGCTTATATCACTTG+TGG | 0.529588 | 3_4:+52501506 | None:intergenic |
| ATTGTTTCAAACGATGGTGT+TGG | 0.533442 | 3_4:-52503620 | Msa0506250:CDS |
| TACAGATGGCCCAACTTGAA+TGG | 0.533873 | 3_4:-52501857 | Msa0506250:CDS |
| TAATCTATCAAACCAAAGAA+AGG | 0.534196 | 3_4:+52501140 | None:intergenic |
| AAAACTAAGAATCAGCAAGT+AGG | 0.536964 | 3_4:-52501825 | Msa0506250:CDS |
| CACATGATAAATGTTCCAAA+AGG | 0.540984 | 3_4:+52502624 | None:intergenic |
| GTACCCGTTGGCTATATGGC+GGG | 0.543954 | 3_4:-52501665 | Msa0506250:CDS |
| ATATCACTATTAAATAGCAT+TGG | 0.545231 | 3_4:-52502822 | Msa0506250:CDS |
| ACTTCAACCAGTTGGAGAAG+TGG | 0.545633 | 3_4:-52501551 | Msa0506250:CDS |
| TTCTTCTTCTGAACTTAAGG+AGG | 0.546105 | 3_4:-52503501 | Msa0506250:CDS |
| CGGGACTACTTACAGGAGAA+TGG | 0.550383 | 3_4:-52501646 | Msa0506250:CDS |
| GTCCAGACACTTCAACCAGT+TGG | 0.551126 | 3_4:-52501559 | Msa0506250:CDS |
| CCAAATAGAACTACGTGAGA+TGG | 0.553445 | 3_4:+52502728 | None:intergenic |
| TAAGAAGCTCACCAGTTACT+GGG | 0.561023 | 3_4:-52501742 | Msa0506250:CDS |
| AGTCCCGCCATATAGCCAAC+GGG | 0.562063 | 3_4:+52501662 | None:intergenic |
| TCCAACAAGGGGTGAACCAA+AGG | 0.564114 | 3_4:+52502770 | None:intergenic |
| GAATGAAATGAAGGTACAGA+TGG | 0.564254 | 3_4:-52501871 | Msa0506250:CDS |
| GGACTTGTAATGAAGCGCCT+TGG | 0.566613 | 3_4:+52502663 | None:intergenic |
| GTATGCTTATGGATTGCTCA+AGG | 0.581941 | 3_4:-52501343 | Msa0506250:CDS |
| AACACAGAAAGTCAAAGTCA+TGG | 0.584990 | 3_4:+52503471 | None:intergenic |
| GTAACAATCAACGGCGTCCG+TGG | 0.585114 | 3_4:+52502885 | None:intergenic |
| TAATGAAGCGCCTTGGAAGT+GGG | 0.585676 | 3_4:+52502670 | None:intergenic |
| GCAATCTCCTATCTCCAACA+AGG | 0.587511 | 3_4:+52502757 | None:intergenic |
| GGTTGAACCTCTAGCTATTG+CGG | 0.590426 | 3_4:-52501625 | Msa0506250:CDS |
| CAATCTCCTATCTCCAACAA+GGG | 0.590929 | 3_4:+52502758 | None:intergenic |
| CACACAGAGACCCACTTCCA+AGG | 0.593153 | 3_4:-52502680 | Msa0506250:intron |
| AAGTTCTGCTCTATTTACAA+AGG | 0.594615 | 3_4:-52500970 | Msa0506250:three_prime_UTR |
| AAAGGCATATAGGTACTGGT+TGG | 0.596578 | 3_4:+52502642 | None:intergenic |
| AGATGTTATTTGATCCAACC+AGG | 0.596897 | 3_4:-52501899 | Msa0506250:CDS |
| GTGCAGCATTTCGTACCCGT+TGG | 0.598938 | 3_4:-52501677 | Msa0506250:CDS |
| TAGTCCCGCCATATAGCCAA+CGG | 0.599613 | 3_4:+52501661 | None:intergenic |
| AAAGCAGCTATATTCGTTGG+TGG | 0.600841 | 3_4:-52501287 | Msa0506250:CDS |
| ATTGCGGAATACTATAGAGA+TGG | 0.610344 | 3_4:-52501609 | Msa0506250:CDS |
| GAAGACATTGTTTCAAACGA+TGG | 0.612365 | 3_4:-52503626 | Msa0506250:CDS |
| CCATGCCCAGTAACAATCAA+CGG | 0.629569 | 3_4:+52502876 | None:intergenic |
| ATTCTCAAAAGAGGTTGCAT+CGG | 0.629928 | 3_4:+52502599 | None:intergenic |
| GCGGAATACTATAGAGATGG+TGG | 0.634782 | 3_4:-52501606 | Msa0506250:CDS |
| TAGTATTCCGCAATAGCTAG+AGG | 0.638929 | 3_4:+52501618 | None:intergenic |
| ACTTGATATATTGAAATCTG+AGG | 0.639132 | 3_4:-52503381 | Msa0506250:intron |
| TGGAAAGTTGATAAAGAACG+AGG | 0.646078 | 3_4:-52503590 | Msa0506250:intron |
| GAACCAAAGGTGATGCAGAG+TGG | 0.654270 | 3_4:+52502783 | None:intergenic |
| CGTACCCGTTGGCTATATGG+CGG | 0.655552 | 3_4:-52501666 | Msa0506250:CDS |
| AGGAAACATATGAAGTTCAG+GGG | 0.655971 | 3_4:+52501160 | None:intergenic |
| AGATCGTTAGTTCAAATCCA+CGG | 0.689699 | 3_4:-52502902 | Msa0506250:CDS |
| AATCTCCTATCTCCAACAAG+GGG | 0.702048 | 3_4:+52502759 | None:intergenic |
| TTGTGCCAAGAAAATATCTG+CGG | 0.707071 | 3_4:+52501308 | None:intergenic |
| AATTGAGCTTGCATCAATGG+TGG | 0.720783 | 3_4:-52503705 | Msa0506250:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGCATTTATTTCATTATTC+TGG | - | chr3_4:52501292-52501311 | Msa0506250:CDS | 20.0% |
| !! | ATATCACTATTAAATAGCAT+TGG | - | chr3_4:52501809-52501828 | Msa0506250:CDS | 20.0% |
| !! | AAGACTATGTTAATAAGAAA+AGG | - | chr3_4:52503050-52503069 | Msa0506250:intron | 20.0% |
| ! | TTTGACCATTATAGCATTTA+AGG | - | chr3_4:52501070-52501089 | Msa0506250:three_prime_UTR | 25.0% |
| ! | ACTTGATATATTGAAATCTG+AGG | - | chr3_4:52501250-52501269 | Msa0506250:CDS | 25.0% |
| !!! | TTGATTTTTATCATGGACTA+AGG | + | chr3_4:52502092-52502111 | None:intergenic | 25.0% |
| ! | TTAGTCCATGATAAAAATCA+AGG | - | chr3_4:52502091-52502110 | Msa0506250:intron | 25.0% |
| ! | TTTCCATAATCAATAGTTTC+AGG | + | chr3_4:52502118-52502137 | None:intergenic | 25.0% |
| !! | TTGCATAAATTTTTCCATTC+AGG | - | chr3_4:52502168-52502187 | Msa0506250:intron | 25.0% |
| ! | GCTAAATGTTATAATTACAG+TGG | - | chr3_4:52502511-52502530 | Msa0506250:intron | 25.0% |
| !!! | TTACAGTGGATTAAATAAAG+AGG | - | chr3_4:52502525-52502544 | Msa0506250:CDS | 25.0% |
| !! | CATGAAAAATTAGAGTTTTC+AGG | + | chr3_4:52502606-52502625 | None:intergenic | 25.0% |
| ! | GAAGAAATTGTTTGAATTTG+AGG | - | chr3_4:52503264-52503283 | Msa0506250:intron | 25.0% |
| ! | AACGAGTATAAAGAGATTAA+GGG | - | chr3_4:52503367-52503386 | Msa0506250:intron | 25.0% |
| ! | TAATCTATCAAACCAAAGAA+AGG | + | chr3_4:52503494-52503513 | None:intergenic | 25.0% |
| !!! | TTTCTTTGGTTTGATAGATT+AGG | - | chr3_4:52503493-52503512 | Msa0506250:CDS | 25.0% |
| ! | GATAGATTAGGATGATTATA+TGG | - | chr3_4:52503505-52503524 | Msa0506250:CDS | 25.0% |
| CTAGTATACTTTGTAAGTCA+TGG | - | chr3_4:52500955-52500974 | Msa0506250:three_prime_UTR | 30.0% | |
| TCAGAAGAAGAAATCAAATC+AGG | + | chr3_4:52501122-52501141 | None:intergenic | 30.0% | |
| GATTTCTTCTTCTGAACTTA+AGG | - | chr3_4:52501127-52501146 | Msa0506250:three_prime_UTR | 30.0% | |
| TTGCATTGTAACACTGAATT+AGG | - | chr3_4:52501472-52501491 | Msa0506250:CDS | 30.0% | |
| GCATTAAGACTGTTACATAA+GGG | + | chr3_4:52501709-52501728 | None:intergenic | 30.0% | |
| TGCATTAAGACTGTTACATA+AGG | + | chr3_4:52501710-52501729 | None:intergenic | 30.0% | |
| ! | AAATGTTCCAAAAGGCATAT+AGG | + | chr3_4:52502002-52502021 | None:intergenic | 30.0% |
| CACATGATAAATGTTCCAAA+AGG | + | chr3_4:52502010-52502029 | None:intergenic | 30.0% | |
| ATTTCATTCAATTTCCTGGT+TGG | + | chr3_4:52502749-52502768 | None:intergenic | 30.0% | |
| CTTCATTTCATTCAATTTCC+TGG | + | chr3_4:52502753-52502772 | None:intergenic | 30.0% | |
| CAGGAAATTGAATGAAATGA+AGG | - | chr3_4:52502751-52502770 | Msa0506250:CDS | 30.0% | |
| AAAACTAAGAATCAGCAAGT+AGG | - | chr3_4:52502806-52502825 | Msa0506250:CDS | 30.0% | |
| AAACTAAGAATCAGCAAGTA+GGG | - | chr3_4:52502807-52502826 | Msa0506250:CDS | 30.0% | |
| TATGGAATTGAACAACATCA+TGG | + | chr3_4:52502871-52502890 | None:intergenic | 30.0% | |
| GAAATGAAACCTCAAAAAGA+AGG | - | chr3_4:52502932-52502951 | Msa0506250:intron | 30.0% | |
| CAGTACAAGTACAAAGAATA+TGG | - | chr3_4:52503141-52503160 | Msa0506250:intron | 30.0% | |
| !!! | TGACTATTGATTCTTGCTTT+TGG | - | chr3_4:52503173-52503192 | Msa0506250:intron | 30.0% |
| !!! | GACTATTGATTCTTGCTTTT+GGG | - | chr3_4:52503174-52503193 | Msa0506250:intron | 30.0% |
| GAACGAGTATAAAGAGATTA+AGG | - | chr3_4:52503366-52503385 | Msa0506250:intron | 30.0% | |
| ! | AAAATTGAGAAGTATGCTAC+AGG | - | chr3_4:52503436-52503455 | Msa0506250:CDS | 30.0% |
| AAGGAAACATATGAAGTTCA+GGG | + | chr3_4:52503475-52503494 | None:intergenic | 30.0% | |
| AAAGGAAACATATGAAGTTC+AGG | + | chr3_4:52503476-52503495 | None:intergenic | 30.0% | |
| CTTCATATGTTTCCTTTCTT+TGG | - | chr3_4:52503479-52503498 | Msa0506250:CDS | 30.0% | |
| !!! | CTATTTCTGTTTTAGAACTC+TGG | - | chr3_4:52503603-52503622 | Msa0506250:CDS | 30.0% |
| AAGTTCTGCTCTATTTACAA+AGG | - | chr3_4:52503661-52503680 | Msa0506250:CDS | 30.0% | |
| GAGAAAATCGCTTCAAATAA+AGG | - | chr3_4:52503704-52503723 | Msa0506250:exon | 30.0% | |
| GAAGACATTGTTTCAAACGA+TGG | - | chr3_4:52501005-52501024 | Msa0506250:three_prime_UTR | 35.0% | |
| ATTGTTTCAAACGATGGTGT+TGG | - | chr3_4:52501011-52501030 | Msa0506250:three_prime_UTR | 35.0% | |
| !! | TGGAAAGTTGATAAAGAACG+AGG | - | chr3_4:52501041-52501060 | Msa0506250:three_prime_UTR | 35.0% |
| TGCAGCCTTAAATGCTATAA+TGG | + | chr3_4:52501078-52501097 | None:intergenic | 35.0% | |
| TTCTTCTTCTGAACTTAAGG+AGG | - | chr3_4:52501130-52501149 | Msa0506250:three_prime_UTR | 35.0% | |
| AACACAGAAAGTCAAAGTCA+TGG | + | chr3_4:52501163-52501182 | None:intergenic | 35.0% | |
| !! | GTTTTGTTAAGAGAGAAGGT+TGG | + | chr3_4:52501197-52501216 | None:intergenic | 35.0% |
| !!! | TGCAGTTTTGTTAAGAGAGA+AGG | + | chr3_4:52501201-52501220 | None:intergenic | 35.0% |
| ACAAATTTCGTGTAGTTGTG+TGG | - | chr3_4:52501318-52501337 | Msa0506250:CDS | 35.0% | |
| TGTGTATCTGCTTCATTCTT+TGG | - | chr3_4:52501391-52501410 | Msa0506250:CDS | 35.0% | |
| GTATCTAGACTCATCTTTCT+AGG | - | chr3_4:52501661-52501680 | Msa0506250:CDS | 35.0% | |
| AGATCGTTAGTTCAAATCCA+CGG | - | chr3_4:52501729-52501748 | Msa0506250:CDS | 35.0% | |
| ATTCTCAAAAGAGGTTGCAT+CGG | + | chr3_4:52502035-52502054 | None:intergenic | 35.0% | |
| AGATTCTGCATTCTCAAAAG+AGG | + | chr3_4:52502044-52502063 | None:intergenic | 35.0% | |
| TGAGAATGCAGAATCTATCT+TGG | - | chr3_4:52502048-52502067 | Msa0506250:intron | 35.0% | |
| ! | CTTGGCAATTTTTGTAGCAT+TGG | - | chr3_4:52502066-52502085 | Msa0506250:intron | 35.0% |
| ! | CAGGTCCTTGATTTTTATCA+TGG | + | chr3_4:52502099-52502118 | None:intergenic | 35.0% |
| ! | GGACCTGAAACTATTGATTA+TGG | - | chr3_4:52502112-52502131 | Msa0506250:intron | 35.0% |
| TATTCACTTACCTGCATTTG+TGG | + | chr3_4:52502265-52502284 | None:intergenic | 35.0% | |
| CCTATTGAGTATGGTTCAAT+CGG | + | chr3_4:52502307-52502326 | None:intergenic | 35.0% | |
| TGAACTTGTGAGAGTGATTA+AGG | - | chr3_4:52502352-52502371 | Msa0506250:intron | 35.0% | |
| TTTGGAAATAATCCTCAGTC+TGG | + | chr3_4:52502440-52502459 | None:intergenic | 35.0% | |
| CCAAGTCAATTTCAGAAATG+AGG | + | chr3_4:52502630-52502649 | None:intergenic | 35.0% | |
| !! | CCTCATTTCTGAAATTGACT+TGG | - | chr3_4:52502627-52502646 | Msa0506250:CDS | 35.0% |
| !! | TCTGAAATTGACTTGGTAAC+AGG | - | chr3_4:52502634-52502653 | Msa0506250:CDS | 35.0% |
| TAACTTTGTGTCCAGAGTAT+TGG | + | chr3_4:52502678-52502697 | None:intergenic | 35.0% | |
| ! | AGATGTTATTTGATCCAACC+AGG | - | chr3_4:52502732-52502751 | Msa0506250:CDS | 35.0% |
| ! | GAATGAAATGAAGGTACAGA+TGG | - | chr3_4:52502760-52502779 | Msa0506250:CDS | 35.0% |
| ! | CTTCTTGTACCATTCAAGTT+GGG | + | chr3_4:52502786-52502805 | None:intergenic | 35.0% |
| TCTTCTTGTACCATTCAAGT+TGG | + | chr3_4:52502787-52502806 | None:intergenic | 35.0% | |
| TGAACAACATCATGGTCAAA+TGG | + | chr3_4:52502863-52502882 | None:intergenic | 35.0% | |
| ATTGCGGAATACTATAGAGA+TGG | - | chr3_4:52503022-52503041 | Msa0506250:intron | 35.0% | |
| ! | GTTGATGGAAGACTCAAAAA+AGG | - | chr3_4:52503102-52503121 | Msa0506250:intron | 35.0% |
| TGTACTGCTTATATCACTTG+TGG | + | chr3_4:52503128-52503147 | None:intergenic | 35.0% | |
| CCTTCAACTCTTTGCATAAA+AGG | + | chr3_4:52503219-52503238 | None:intergenic | 35.0% | |
| ! | CCTTTTATGCAAAGAGTTGA+AGG | - | chr3_4:52503216-52503235 | Msa0506250:intron | 35.0% |
| ! | GAATTTGAGGTGTATGCTTA+TGG | - | chr3_4:52503277-52503296 | Msa0506250:intron | 35.0% |
| TTGTGCCAAGAAAATATCTG+CGG | + | chr3_4:52503326-52503345 | None:intergenic | 35.0% | |
| AGGAAACATATGAAGTTCAG+GGG | + | chr3_4:52503474-52503493 | None:intergenic | 35.0% | |
| ! | GAGCAATTCATTGATTGAAG+TGG | - | chr3_4:52503534-52503553 | Msa0506250:CDS | 35.0% |
| TGGAATTGAGCTTGCATCAA+TGG | - | chr3_4:52500923-52500942 | Msa0506250:three_prime_UTR | 40.0% | |
| AATTGAGCTTGCATCAATGG+TGG | - | chr3_4:52500926-52500945 | Msa0506250:three_prime_UTR | 40.0% | |
| TCTTTGTGTCAGTGCTTCAT+AGG | - | chr3_4:52501582-52501601 | Msa0506250:CDS | 40.0% | |
| CATAAGGGATCGTAGTGAAA+AGG | + | chr3_4:52501694-52501713 | None:intergenic | 40.0% | |
| AATCTCCTATCTCCAACAAG+GGG | + | chr3_4:52501875-52501894 | None:intergenic | 40.0% | |
| CAATCTCCTATCTCCAACAA+GGG | + | chr3_4:52501876-52501895 | None:intergenic | 40.0% | |
| CCAAATAGAACTACGTGAGA+TGG | + | chr3_4:52501906-52501925 | None:intergenic | 40.0% | |
| ! | CCATCTCACGTAGTTCTATT+TGG | - | chr3_4:52501903-52501922 | Msa0506250:CDS | 40.0% |
| !! | AAAGGCATATAGGTACTGGT+TGG | + | chr3_4:52501992-52502011 | None:intergenic | 40.0% |
| ! | ACCAGTACCTATATGCCTTT+TGG | - | chr3_4:52501992-52502011 | Msa0506250:intron | 40.0% |
| ! | TCCAAAAGGCATATAGGTAC+TGG | + | chr3_4:52501996-52502015 | None:intergenic | 40.0% |
| ! | AGTCATGTTTTCAGCCTGAA+TGG | + | chr3_4:52502185-52502204 | None:intergenic | 40.0% |
| ATTCAGGCTGAAAACATGAC+TGG | - | chr3_4:52502184-52502203 | Msa0506250:intron | 40.0% | |
| !! | AACTGGCATTAGTTTGCAGT+TGG | - | chr3_4:52502222-52502241 | Msa0506250:intron | 40.0% |
| AGAATTGACACCACAAATGC+AGG | - | chr3_4:52502252-52502271 | Msa0506250:intron | 40.0% | |
| CCGATTGAACCATACTCAAT+AGG | - | chr3_4:52502304-52502323 | Msa0506250:intron | 40.0% | |
| TGAACCATACTCAATAGGTG+TGG | - | chr3_4:52502309-52502328 | Msa0506250:intron | 40.0% | |
| CTCAAAAGAGGGTTGTTCTT+TGG | + | chr3_4:52502386-52502405 | None:intergenic | 40.0% | |
| ! | AAGAACAACCCTCTTTTGAG+AGG | - | chr3_4:52502386-52502405 | Msa0506250:intron | 40.0% |
| !! | AGAACAACCCTCTTTTGAGA+GGG | - | chr3_4:52502387-52502406 | Msa0506250:intron | 40.0% |
| TCTTCATCCCTCTCAAAAGA+GGG | + | chr3_4:52502397-52502416 | None:intergenic | 40.0% | |
| TCACAAAGTCGAAGCTTGTA+GGG | - | chr3_4:52502466-52502485 | Msa0506250:intron | 40.0% | |
| GAAGCTTGTAGGGATAATCT+GGG | - | chr3_4:52502476-52502495 | Msa0506250:intron | 40.0% | |
| !! | ATTGACTTGGTAACAGGAAC+AGG | - | chr3_4:52502640-52502659 | Msa0506250:CDS | 40.0% |
| !! | TTGACTTGGTAACAGGAACA+GGG | - | chr3_4:52502641-52502660 | Msa0506250:CDS | 40.0% |
| GAACAGTGAAACCAATACTC+TGG | - | chr3_4:52502664-52502683 | Msa0506250:CDS | 40.0% | |
| AGTAACTGGTGAGCTTCTTA+TGG | + | chr3_4:52502889-52502908 | None:intergenic | 40.0% | |
| ATAAGAAGCTCACCAGTTAC+TGG | - | chr3_4:52502888-52502907 | Msa0506250:CDS | 40.0% | |
| TAAGAAGCTCACCAGTTACT+GGG | - | chr3_4:52502889-52502908 | Msa0506250:CDS | 40.0% | |
| AACTATCTTCTCCCAGTAAC+TGG | + | chr3_4:52502903-52502922 | None:intergenic | 40.0% | |
| ! | AATGCTGCACCTTCTTTTTG+AGG | + | chr3_4:52502944-52502963 | None:intergenic | 40.0% |
| TAGTATTCCGCAATAGCTAG+AGG | + | chr3_4:52503016-52503035 | None:intergenic | 40.0% | |
| ! | GTATGCTTATGGATTGCTCA+AGG | - | chr3_4:52503288-52503307 | Msa0506250:intron | 40.0% |
| ! | AGTGTCCGCAGATATTTTCT+TGG | - | chr3_4:52503318-52503337 | Msa0506250:intron | 40.0% |
| CACAAAGCAGCTATATTCGT+TGG | - | chr3_4:52503341-52503360 | Msa0506250:intron | 40.0% | |
| AAAGCAGCTATATTCGTTGG+TGG | - | chr3_4:52503344-52503363 | Msa0506250:intron | 40.0% | |
| ! | ACGATGGTGTTGGACTTTCT+TGG | - | chr3_4:52501021-52501040 | Msa0506250:three_prime_UTR | 45.0% |
| TTCGTGTAGTTGTGTGGCTA+TGG | - | chr3_4:52501324-52501343 | Msa0506250:CDS | 45.0% | |
| CCATGCCCAGTAACAATCAA+CGG | + | chr3_4:52501758-52501777 | None:intergenic | 45.0% | |
| ATTGTTACTGGGCATGGTCT+TGG | - | chr3_4:52501761-52501780 | Msa0506250:CDS | 45.0% | |
| GCAATCTCCTATCTCCAACA+AGG | + | chr3_4:52501877-52501896 | None:intergenic | 45.0% | |
| ! | TAATGAAGCGCCTTGGAAGT+GGG | + | chr3_4:52501964-52501983 | None:intergenic | 45.0% |
| GGTCAAGATTCACTAGCAAC+TGG | - | chr3_4:52502205-52502224 | Msa0506250:intron | 45.0% | |
| AGAGCCACACCTATTGAGTA+TGG | + | chr3_4:52502316-52502335 | None:intergenic | 45.0% | |
| CTCTTCATCCCTCTCAAAAG+AGG | + | chr3_4:52502398-52502417 | None:intergenic | 45.0% | |
| TTGAGAGGGATGAAGAGCTT+TGG | - | chr3_4:52502401-52502420 | Msa0506250:intron | 45.0% | |
| TGTGATCAAGTTCCAGACTG+AGG | - | chr3_4:52502425-52502444 | Msa0506250:intron | 45.0% | |
| ! | TCGACTTTGTGAGTTGGCTT+TGG | + | chr3_4:52502458-52502477 | None:intergenic | 45.0% |
| CAAGCTTCGACTTTGTGAGT+TGG | + | chr3_4:52502464-52502483 | None:intergenic | 45.0% | |
| CTCACAAAGTCGAAGCTTGT+AGG | - | chr3_4:52502465-52502484 | Msa0506250:intron | 45.0% | |
| CGAAGCTTGTAGGGATAATC+TGG | - | chr3_4:52502475-52502494 | Msa0506250:intron | 45.0% | |
| !! | TGACTTGGTAACAGGAACAG+GGG | - | chr3_4:52502642-52502661 | Msa0506250:CDS | 45.0% |
| TACAGATGGCCCAACTTGAA+TGG | - | chr3_4:52502774-52502793 | Msa0506250:CDS | 45.0% | |
| ! | TTTCGTACCCGTTGGCTATA+TGG | - | chr3_4:52502962-52502981 | Msa0506250:intron | 45.0% |
| ! | TATATGGCGGGACTACTTAC+AGG | - | chr3_4:52502978-52502997 | Msa0506250:intron | 45.0% |
| GGTTGAACCTCTAGCTATTG+CGG | - | chr3_4:52503006-52503025 | Msa0506250:intron | 45.0% | |
| GCGGAATACTATAGAGATGG+TGG | - | chr3_4:52503025-52503044 | Msa0506250:intron | 45.0% | |
| ACTTCAACCAGTTGGAGAAG+TGG | - | chr3_4:52503080-52503099 | Msa0506250:intron | 45.0% | |
| ! | CTTTTGGGCACATGTTGAAG+AGG | - | chr3_4:52503189-52503208 | Msa0506250:intron | 45.0% |
| CAGTGTGTCTTCTCTCTCAT+TGG | + | chr3_4:52503245-52503264 | None:intergenic | 45.0% | |
| ACACTGAATTAGGTGTGCCC+CGG | - | chr3_4:52501482-52501501 | Msa0506250:CDS | 50.0% | |
| ! | GGACGCCGTTGATTGTTACT+GGG | - | chr3_4:52501750-52501769 | Msa0506250:CDS | 50.0% |
| ! | CCGTTGATTGTTACTGGGCA+TGG | - | chr3_4:52501755-52501774 | Msa0506250:CDS | 50.0% |
| GAACCAAAGGTGATGCAGAG+TGG | + | chr3_4:52501851-52501870 | None:intergenic | 50.0% | |
| ! | ACCTTTGGTTCACCCCTTGT+TGG | - | chr3_4:52501860-52501879 | Msa0506250:CDS | 50.0% |
| TCCAACAAGGGGTGAACCAA+AGG | + | chr3_4:52501864-52501883 | None:intergenic | 50.0% | |
| GTTCACCCCTTGTTGGAGAT+AGG | - | chr3_4:52501867-52501886 | Msa0506250:CDS | 50.0% | |
| ! | GTAATGAAGCGCCTTGGAAG+TGG | + | chr3_4:52501965-52501984 | None:intergenic | 50.0% |
| ! | GGACTTGTAATGAAGCGCCT+TGG | + | chr3_4:52501971-52501990 | None:intergenic | 50.0% |
| TAGTCCCGCCATATAGCCAA+CGG | + | chr3_4:52502973-52502992 | None:intergenic | 50.0% | |
| CGGGACTACTTACAGGAGAA+TGG | - | chr3_4:52502985-52503004 | Msa0506250:intron | 50.0% | |
| GTCCAGACACTTCAACCAGT+TGG | - | chr3_4:52503072-52503091 | Msa0506250:intron | 50.0% | |
| ! | CTCCAACTGGTTGAAGTGTC+TGG | + | chr3_4:52503077-52503096 | None:intergenic | 50.0% |
| CCATCAACCACTTCTCCAAC+TGG | + | chr3_4:52503090-52503109 | None:intergenic | 50.0% | |
| CCAGTTGGAGAAGTGGTTGA+TGG | - | chr3_4:52503087-52503106 | Msa0506250:intron | 50.0% | |
| TCGTGTCAGTGTCTGACACC+GGG | + | chr3_4:52501503-52501522 | None:intergenic | 55.0% | |
| GTCGTGTCAGTGTCTGACAC+CGG | + | chr3_4:52501504-52501523 | None:intergenic | 55.0% | |
| GTAACAATCAACGGCGTCCG+TGG | + | chr3_4:52501749-52501768 | None:intergenic | 55.0% | |
| ! | CGGACGCCGTTGATTGTTAC+TGG | - | chr3_4:52501749-52501768 | Msa0506250:CDS | 55.0% |
| ! | GTTACTGGGCATGGTCTTGG+AGG | - | chr3_4:52501764-52501783 | Msa0506250:CDS | 55.0% |
| CGTCCACTCTGCATCACCTT+TGG | - | chr3_4:52501845-52501864 | Msa0506250:CDS | 55.0% | |
| CACACAGAGACCCACTTCCA+AGG | - | chr3_4:52501951-52501970 | Msa0506250:intron | 55.0% | |
| GTGCAGCATTTCGTACCCGT+TGG | - | chr3_4:52502954-52502973 | Msa0506250:intron | 55.0% | |
| ! | CGTACCCGTTGGCTATATGG+CGG | - | chr3_4:52502965-52502984 | Msa0506250:intron | 55.0% |
| ! | GTACCCGTTGGCTATATGGC+GGG | - | chr3_4:52502966-52502985 | Msa0506250:intron | 55.0% |
| AGTCCCGCCATATAGCCAAC+GGG | + | chr3_4:52502972-52502991 | None:intergenic | 55.0% | |
| CGTGTCAGTGTCTGACACCG+GGG | + | chr3_4:52501502-52501521 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52500914 | 52503739 | 52500914 | ID=Msa0506250;Name=Msa0506250 |
| chr3_4 | mRNA | 52500914 | 52503739 | 52500914 | ID=Msa0506250-mRNA-1;Parent=Msa0506250;Name=Msa0506250-mRNA-1;_AED=0.13;_eAED=0.14;_QI=28|0.25|0.2|1|0.25|0|5|262|491 |
| chr3_4 | exon | 52500914 | 52501925 | 52500914 | ID=Msa0506250-mRNA-1:exon:11466;Parent=Msa0506250-mRNA-1 |
| chr3_4 | exon | 52502512 | 52502695 | 52502512 | ID=Msa0506250-mRNA-1:exon:11465;Parent=Msa0506250-mRNA-1 |
| chr3_4 | exon | 52502705 | 52502922 | 52502705 | ID=Msa0506250-mRNA-1:exon:11464;Parent=Msa0506250-mRNA-1 |
| chr3_4 | exon | 52503382 | 52503584 | 52503382 | ID=Msa0506250-mRNA-1:exon:11463;Parent=Msa0506250-mRNA-1 |
| chr3_4 | exon | 52503591 | 52503739 | 52503591 | ID=Msa0506250-mRNA-1:exon:11462;Parent=Msa0506250-mRNA-1 |
| chr3_4 | five_prime_UTR | 52503712 | 52503739 | 52503712 | ID=Msa0506250-mRNA-1:five_prime_utr;Parent=Msa0506250-mRNA-1 |
| chr3_4 | CDS | 52503591 | 52503711 | 52503591 | ID=Msa0506250-mRNA-1:cds;Parent=Msa0506250-mRNA-1 |
| chr3_4 | CDS | 52503382 | 52503584 | 52503382 | ID=Msa0506250-mRNA-1:cds;Parent=Msa0506250-mRNA-1 |
| chr3_4 | CDS | 52502705 | 52502922 | 52502705 | ID=Msa0506250-mRNA-1:cds;Parent=Msa0506250-mRNA-1 |
| chr3_4 | CDS | 52502512 | 52502695 | 52502512 | ID=Msa0506250-mRNA-1:cds;Parent=Msa0506250-mRNA-1 |
| chr3_4 | CDS | 52501176 | 52501925 | 52501176 | ID=Msa0506250-mRNA-1:cds;Parent=Msa0506250-mRNA-1 |
| chr3_4 | three_prime_UTR | 52500914 | 52501175 | 52500914 | ID=Msa0506250-mRNA-1:three_prime_utr;Parent=Msa0506250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
