AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506340 MtrunA17_Chr3g0107701 95.829 911 25 1 1 898 1 911 0.0 1798
Msa0506340 MtrunA17_Chr5g0432721 55.381 827 312 13 1 819 1 778 0.0 832
Msa0506340 MtrunA17_Chr4g0012861 49.324 888 404 16 16 881 19 882 0.0 800
Msa0506340 MtrunA17_Chr2g0281191 43.149 832 383 17 17 815 43 817 0.0 585
Msa0506340 MtrunA17_Chr7g0244871 60.215 93 37 0 318 410 5 97 2.19e-34 127
Msa0506340 MtrunA17_Chr7g0251891 35.294 119 76 1 325 442 16 134 1.86e-19 87.8
Msa0506340 MtrunA17_Chr7g0237841 37.255 102 62 2 325 424 623 724 4.94e-16 82.8
Msa0506340 MtrunA17_Chr1g0178071 36.364 165 80 9 306 456 54 207 5.59e-14 74.3
Msa0506340 MtrunA17_Chr7g0276471 40.659 91 49 3 325 412 117 205 4.91e-13 72.4
Msa0506340 MtrunA17_Chr5g0422501 35.345 116 61 4 325 428 235 348 1.68e-12 70.5
Msa0506340 MtrunA17_Chr8g0345771 38.462 91 51 3 325 412 171 259 2.13e-12 70.9
Msa0506340 MtrunA17_Chr7g0266821 35.338 133 79 5 330 458 65 194 3.58e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506340 AT2G30470.1 48.678 832 328 19 1 823 6 747 0.0 696
Msa0506340 AT4G32010.2 49.391 739 279 17 15 748 20 668 0.0 662
Msa0506340 AT4G32010.1 49.125 743 279 18 15 748 20 672 0.0 658
Msa0506340 AT4G21550.3 38.966 290 119 7 294 580 294 528 3.54e-53 195
Msa0506340 AT4G21550.3 46.575 73 39 0 17 89 31 103 6.72e-17 85.5
Msa0506340 AT4G21550.1 38.614 303 129 6 294 594 294 541 3.68e-49 186
Msa0506340 AT4G21550.1 46.575 73 39 0 17 89 31 103 2.96e-17 87.0
Msa0506340 AT4G21550.1 39.683 126 68 3 669 791 528 648 8.81e-12 69.7
Msa0506340 AT4G21550.2 37.956 274 113 6 294 565 294 512 1.48e-48 181
Msa0506340 AT4G21550.2 46.575 73 39 0 17 89 31 103 3.49e-17 86.3
Msa0506340 AT3G26790.1 42.308 104 59 1 325 427 91 194 4.59e-20 92.4
Msa0506340 AT3G24650.1 39.216 102 60 2 325 424 571 672 4.64e-16 83.2
Msa0506340 AT1G13260.1 39.091 110 60 4 325 429 187 294 1.71e-14 76.3
Msa0506340 AT2G36080.4 39.815 108 56 4 325 425 37 142 2.75e-14 72.4
Msa0506340 AT2G36080.2 39.815 108 56 4 325 425 37 142 2.75e-14 72.4
Msa0506340 AT1G28300.1 43.023 86 48 1 325 409 170 255 3.18e-14 75.9
Msa0506340 AT2G36080.1 39.815 108 56 4 325 425 37 142 5.90e-14 73.2
Msa0506340 AT1G68840.2 41.935 93 47 3 325 412 187 277 1.42e-13 73.6
Msa0506340 AT1G68840.1 41.935 93 47 3 325 412 187 277 1.42e-13 73.6
Msa0506340 AT4G01500.1 41.573 89 49 2 325 412 35 121 1.49e-13 73.6
Msa0506340 AT2G36080.3 39.815 108 56 4 325 425 37 142 5.00e-13 70.1
Msa0506340 AT5G06250.5 31.707 164 89 6 314 459 37 195 7.02e-13 70.5
Msa0506340 AT5G06250.4 31.707 164 89 6 314 459 37 195 7.38e-13 70.5
Msa0506340 AT5G06250.3 32.877 146 79 5 314 445 37 177 7.70e-13 70.1
Msa0506340 AT5G06250.2 31.707 164 89 6 314 459 37 195 8.18e-13 70.5
Msa0506340 AT5G06250.1 32.877 146 79 5 314 445 37 177 1.04e-12 69.7
Msa0506340 AT3G61970.1 39.362 94 49 3 325 412 22 113 1.08e-12 70.5
Msa0506340 AT2G46870.1 39.560 91 50 3 325 412 34 122 1.29e-12 70.1
Msa0506340 AT1G25560.1 34.167 120 65 4 325 432 194 311 5.45e-12 68.9
Msa0506340 AT1G01030.2 39.560 91 50 3 325 412 55 143 6.17e-12 68.6
Msa0506340 AT1G01030.1 39.560 91 50 3 325 412 55 143 7.04e-12 68.6
Msa0506340 AT3G11580.4 38.235 102 47 3 325 412 28 127 2.15e-11 65.1
Msa0506340 AT3G11580.2 38.235 102 47 3 325 412 28 127 2.15e-11 65.1
Msa0506340 AT3G11580.5 38.235 102 47 3 325 412 28 127 2.15e-11 65.1

Find 249 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCCCTTGCATTATTT+TGG 0.089803 3_4:+52612475 None:intergenic
CGGTTCTTGGACCGCCATTT+TGG 0.204307 3_4:+52608107 None:intergenic
AAAAGTAAGAGATTGCTTAT+TGG 0.238596 3_4:-52610196 Msa0506340:CDS
AACGGAGAACTTCGCTTAAA+TGG 0.241658 3_4:-52610355 Msa0506340:CDS
CAAACCTCAGCACAGGCTTT+TGG 0.248819 3_4:+52611262 None:intergenic
ATGAATATAGAAACTGAAAA+AGG 0.252818 3_4:-52611994 Msa0506340:CDS
AACAACATGATTACATCTAA+TGG 0.257026 3_4:-52612336 Msa0506340:CDS
TCTGACATTGGTATGGTAAA+TGG 0.260179 3_4:-52615368 Msa0506340:CDS
CAAAACTTAGTGATCATATA+TGG 0.264606 3_4:-52608147 Msa0506340:CDS
ATCAGTTACTTCCTAGATAT+TGG 0.275669 3_4:-52611918 Msa0506340:CDS
GATGTAATCATGTTGTTTAT+CGG 0.277647 3_4:+52612342 None:intergenic
GAACCTTCACATTTGGTTAC+TGG 0.283547 3_4:-52610325 Msa0506340:CDS
AGCCAGAAGGCTCGTGTTCT+TGG 0.294965 3_4:+52608617 None:intergenic
CTCTGAAGGTCTTCCTTTGC+GGG 0.296256 3_4:-52611056 Msa0506340:CDS
GGAAGGTCAACATTCTTCTT+TGG 0.296343 3_4:-52608068 Msa0506340:CDS
TACATCCTGCTGTTGTTATT+AGG 0.296564 3_4:+52610986 None:intergenic
GGCCCTGCTGATTCCGCAGC+TGG 0.302776 3_4:-52608550 Msa0506340:CDS
TTCTCCTAAAACGGCTAAAC+TGG 0.304782 3_4:+52608582 None:intergenic
GGTTTGCTTAAAGCCGAAAA+TGG 0.307447 3_4:-52610295 Msa0506340:CDS
GTCGATGAAACGGGCCATTT+AGG 0.307880 3_4:+52612498 None:intergenic
ATCTTCAGCGCCTCTTCATC+TGG 0.309531 3_4:-52609868 Msa0506340:CDS
TCTACGTCTGCACTTTCTAA+TGG 0.313577 3_4:-52610469 Msa0506340:CDS
ATTTCAGTATTAACGGTTCT+TGG 0.327294 3_4:+52608094 None:intergenic
TAGATATTGGCCTAGGATTA+CGG 0.327990 3_4:-52611905 Msa0506340:CDS
TATTGGTAATGATGATTCTA+TGG 0.330411 3_4:-52610179 Msa0506340:CDS
CATATTAATATGAACCAAAA+TGG 0.335008 3_4:-52608121 Msa0506340:CDS
GTAATACTGAAAATCCTAAA+TGG 0.335624 3_4:-52612512 Msa0506340:CDS
GCCGTCTTTGAATATGTGTT+TGG 0.340861 3_4:-52612160 Msa0506340:CDS
TATCTTGACTTCGGCGGTAT+AGG 0.341914 3_4:-52613699 Msa0506340:CDS
TCTTTGGCCACTCAATCTAA+TGG 0.347543 3_4:-52608052 Msa0506340:CDS
ATCCAAGAACACGAGCCTTC+TGG 0.347833 3_4:-52608619 Msa0506340:CDS
CTCTAAATGGAGAAAGTTAC+CGG 0.350506 3_4:-52609115 Msa0506340:CDS
AAGGCCGGTCTTTAACAGTT+TGG 0.353568 3_4:+52612020 None:intergenic
AAATACTTCCCAACTAAATA+TGG 0.354913 3_4:-52613661 Msa0506340:intron
AAGAAGTTAGGCCGTCATTC+AGG 0.358196 3_4:-52612302 Msa0506340:CDS
ATTCATTACCCTTCACATCT+TGG 0.362672 3_4:+52611032 None:intergenic
CGAGCTGAGCTCAAGGGAAT+TGG 0.363584 3_4:-52608905 Msa0506340:CDS
TTCCTGCATTTCAGTATTAA+CGG 0.365173 3_4:+52608087 None:intergenic
CAGGAGCTGGAGCGTTTGTC+TGG 0.368698 3_4:-52611880 Msa0506340:CDS
AATGTGATGATTGCTCTAAA+TGG 0.377625 3_4:-52609128 Msa0506340:CDS
AAGAAGAGGACTCGAAATAT+TGG 0.381088 3_4:-52610223 Msa0506340:CDS
AGGCCGGTCTTTAACAGTTT+GGG 0.381417 3_4:+52612021 None:intergenic
GGACATGTTCGGAAAATGTC+TGG 0.386985 3_4:-52609068 Msa0506340:CDS
CGAAGTTCTCCGTTACCATT+TGG 0.387341 3_4:+52610364 None:intergenic
GCTCCAGCTGCGGAATCAGC+AGG 0.391479 3_4:+52608547 None:intergenic
TCATTCAGGGAAGGGGATAC+TGG 0.395233 3_4:-52612288 Msa0506340:CDS
CCGTCTTTGAATATGTGTTT+GGG 0.395837 3_4:-52612159 Msa0506340:CDS
ACAACATGATTACATCTAAT+GGG 0.396289 3_4:-52612335 Msa0506340:CDS
GAGAAAACGTGAAGTGGGTA+TGG 0.399165 3_4:+52615775 None:intergenic
AAGAGAAGTTGCGAATCCTT+TGG 0.400555 3_4:-52608281 Msa0506340:CDS
ACATCCCGAACCTTCACATT+TGG 0.405564 3_4:-52610332 Msa0506340:CDS
GATTTACGTGCTGGTGATAC+TGG 0.406488 3_4:-52610926 Msa0506340:intron
ACTCTGAAGGTCTTCCTTTG+CGG 0.407452 3_4:-52611057 Msa0506340:CDS
TCTTTCTTTGTTCCCAACAT+TGG 0.407495 3_4:+52607988 None:intergenic
TCCCTTGAGCTCAGCTCGTC+CGG 0.408864 3_4:+52608910 None:intergenic
TTATCGGAGCATGACTCATA+TGG 0.413523 3_4:+52612358 None:intergenic
TTTAACAGTTTGGGAAGTAT+AGG 0.414755 3_4:+52612030 None:intergenic
ATTCAGCCACCAAGCGGAAA+AGG 0.418817 3_4:-52608475 Msa0506340:CDS
CCACGTATTGCTCGGCCTCC+TGG 0.420064 3_4:-52611958 Msa0506340:CDS
GACAATGCTTGGCTTGACAC+TGG 0.420212 3_4:+52610108 None:intergenic
AGTAACCAAATGTGAAGGTT+CGG 0.423310 3_4:+52610327 None:intergenic
TTAAACTTACCATATTTAGT+TGG 0.425360 3_4:+52613652 None:intergenic
TCCTCGATTGTGACAATGCT+TGG 0.426368 3_4:+52610097 None:intergenic
ATGTGTTTGGGAAACCCGTC+AGG 0.426949 3_4:-52612147 Msa0506340:CDS
CTCAACTTTGCTTCAAGTGC+GGG 0.431608 3_4:-52615292 Msa0506340:intron
ATTGCTCGGCCTCCTGGTGA+TGG 0.435069 3_4:-52611952 Msa0506340:CDS
CATTTGGTTACTGGAGCTGC+TGG 0.436882 3_4:-52610316 Msa0506340:CDS
ACATTTAGTCGGATAGATCC+TGG 0.438208 3_4:-52610661 Msa0506340:CDS
GTAACCAAATGTGAAGGTTC+GGG 0.441449 3_4:+52610328 None:intergenic
TCCTCCCAAGTGGACATGTT+CGG 0.442585 3_4:-52609079 Msa0506340:CDS
ATTCTCATTTCCACCAGAAA+AGG 0.447087 3_4:+52610426 None:intergenic
TCGGCCTCCTGGTGATGGGA+GGG 0.451096 3_4:-52611947 Msa0506340:CDS
ACCAATCCGACCTGCATCAC+TGG 0.451773 3_4:+52611297 None:intergenic
GGGTGTGACCCCTTGTATAC+AGG 0.451818 3_4:-52610954 Msa0506340:CDS
AACAACTCTTTCCCACCATC+TGG 0.452851 3_4:-52612123 Msa0506340:CDS
CGGCCTCCTGGTGATGGGAG+GGG 0.454483 3_4:-52611946 Msa0506340:CDS
TAAACTTACCATATTTAGTT+GGG 0.454535 3_4:+52613653 None:intergenic
GCAAAAGTTAATGACTGAAC+AGG 0.455178 3_4:+52612243 None:intergenic
TTCTAATGGCGGTTCGGCAA+AGG 0.457309 3_4:-52610455 Msa0506340:CDS
AAATCCATGGCCTGTATACA+AGG 0.462450 3_4:+52610944 None:intergenic
TTCTATATTCATGGTAAGGC+CGG 0.462900 3_4:+52612005 None:intergenic
AAATTCCATCGTCAACAAAC+TGG 0.467730 3_4:-52613883 Msa0506340:CDS
CAGTTTCTATATTCATGGTA+AGG 0.468963 3_4:+52612001 None:intergenic
TTCTCTTGATGCTCCACCAT+TGG 0.470671 3_4:+52608297 None:intergenic
CTCGGCCTCCTGGTGATGGG+AGG 0.470919 3_4:-52611948 Msa0506340:CDS
TCTAATGGCGGTTCGGCAAA+GGG 0.472103 3_4:-52610454 Msa0506340:CDS
AAAGGGTGGGGTTTACGATC+TGG 0.472704 3_4:-52615323 Msa0506340:CDS
TAGGATTACGGACCAGGAGC+TGG 0.472738 3_4:-52611893 Msa0506340:CDS
AAGATCTATCTTTCCAGCGC+TGG 0.475080 3_4:+52608213 None:intergenic
GATGCATTGCATCCAATGTT+GGG 0.477504 3_4:-52608000 Msa0506340:CDS
GGAAAGAGTTGTTCCCTGAC+GGG 0.480170 3_4:+52612133 None:intergenic
GATCTTCTCCGTTCACCAAA+TGG 0.483108 3_4:-52610379 Msa0506340:CDS
CTATGGAGTTGAGACTTACA+TGG 0.484609 3_4:-52610162 Msa0506340:CDS
AGAAGTTAGGCCGTCATTCA+GGG 0.485967 3_4:-52612301 Msa0506340:CDS
CCTTCAGAGTGTGTAATATG+AGG 0.486209 3_4:+52611070 None:intergenic
CACTTGCGAGTCATCGCGAT+TGG 0.487038 3_4:+52608180 None:intergenic
CTTGGCTTGACACTGGGCGG+TGG 0.487076 3_4:+52610115 None:intergenic
CTCCGTTACCATTTGGTGAA+CGG 0.487521 3_4:+52610371 None:intergenic
CAACAGCAGGATGTACGTAT+TGG 0.488320 3_4:-52610978 Msa0506340:CDS
GTGCTGAGTGCCAGTGATGC+AGG 0.488585 3_4:-52611307 Msa0506340:CDS
AACTATTTCGTCCAGGGTGA+AGG 0.490506 3_4:-52609163 Msa0506340:intron
TACTTCCTAGATATTGGCCT+AGG 0.490891 3_4:-52611912 Msa0506340:CDS
TGCACTTTCTAATGGCGGTT+CGG 0.491976 3_4:-52610461 Msa0506340:CDS
AGAGAGAGAAAACGTGAAGT+GGG 0.493467 3_4:+52615770 None:intergenic
CACCGGACGAGCTGAGCTCA+AGG 0.494872 3_4:-52608912 Msa0506340:CDS
CAGACAAACGCTCCAGCTCC+TGG 0.495028 3_4:+52611881 None:intergenic
AACCGTTAATACTGAAATGC+AGG 0.496893 3_4:-52608089 Msa0506340:CDS
GAACAGCCGGGACGGTGTCT+AGG 0.499276 3_4:+52608511 None:intergenic
TTCAGCCACCAAGCGGAAAA+GGG 0.500074 3_4:-52608474 Msa0506340:CDS
ATGGTTCGTGTGTTCATGAA+TGG 0.503991 3_4:-52615349 Msa0506340:CDS
CTCAGCACCTTCTCAAACAA+TGG 0.504763 3_4:+52611322 None:intergenic
AAAACTTAGTGATCATATAT+GGG 0.505964 3_4:-52608146 Msa0506340:CDS
GGGAAAGAGTTGTTCCCTGA+CGG 0.506096 3_4:+52612132 None:intergenic
TTGCTCGGCCTCCTGGTGAT+GGG 0.511113 3_4:-52611951 Msa0506340:CDS
TAGAGAGAGAAAACGTGAAG+TGG 0.511563 3_4:+52615769 None:intergenic
TTCTTACCCCTCCCATCACC+AGG 0.513704 3_4:+52611940 None:intergenic
ATTCAGCTTCAGAGAAGAAG+AGG 0.515423 3_4:-52610237 Msa0506340:CDS
ACTACAGACGGAAGACTTGA+GGG 0.517542 3_4:-52612093 Msa0506340:CDS
GATCTCGGCCCTTGATGAAA+GGG 0.518190 3_4:+52612057 None:intergenic
GATGACTAGCAATAATTCAC+TGG 0.518975 3_4:-52610269 Msa0506340:CDS
AGAAAACGTGAAGTGGGTAT+GGG 0.519518 3_4:+52615776 None:intergenic
GCCAGTGATGCAGGTCGGAT+TGG 0.520413 3_4:-52611298 Msa0506340:CDS
CATGAATGGAAGAAAGGGTG+GGG 0.520502 3_4:-52615335 Msa0506340:CDS
GTAATCCTAGGCCAATATCT+AGG 0.520534 3_4:+52611907 None:intergenic
GTAACCAACCTGTGTGTCTA+CGG 0.523912 3_4:+52610600 None:intergenic
TTTGGCCTAATAACAACAGC+AGG 0.525991 3_4:-52610991 Msa0506340:CDS
TTGGCCTAGGATTACGGACC+AGG 0.525994 3_4:-52611899 Msa0506340:CDS
ACAATGCTTGGCTTGACACT+GGG 0.526210 3_4:+52610109 None:intergenic
CATTTAGTCGGATAGATCCT+GGG 0.527144 3_4:-52610660 Msa0506340:CDS
ATGCTCTTCTTCCTCCCAAG+TGG 0.528369 3_4:-52609089 Msa0506340:CDS
AGAAAATAATAGACCAGCAT+GGG 0.528624 3_4:-52612214 Msa0506340:CDS
AAATGGATAGTGGTAAAGAC+AGG 0.529105 3_4:+52607703 None:intergenic
GCACACAATACAAGAACAGC+CGG 0.529568 3_4:+52608498 None:intergenic
AAGATGTGAAGGGTAATGAA+TGG 0.530191 3_4:-52611030 Msa0506340:CDS
AGATGCATTGCATCCAATGT+TGG 0.530925 3_4:-52608001 Msa0506340:CDS
TTCATGAATGGAAGAAAGGG+TGG 0.533771 3_4:-52615337 Msa0506340:CDS
AACGAAGGAGGACTAAATAG+AGG 0.534232 3_4:-52608256 Msa0506340:CDS
GGATGCAATGCATCTTTCAT+CGG 0.534582 3_4:+52608009 None:intergenic
AGCTCCTGGTCCGTAATCCT+AGG 0.537010 3_4:+52611895 None:intergenic
TTTCTCAACCACGTATTGCT+CGG 0.537803 3_4:-52611966 Msa0506340:CDS
AGATCTCGGCCCTTGATGAA+AGG 0.538168 3_4:+52612056 None:intergenic
GACCCCTTGTATACAGGCCA+TGG 0.540366 3_4:-52610948 Msa0506340:CDS
GAGGTTGGCGAGTCCAGCGC+TGG 0.541207 3_4:-52608226 Msa0506340:CDS
CAGCAGGATGTACGTATTGG+AGG 0.545399 3_4:-52610975 Msa0506340:CDS
CAGGCCATGGATTTACGTGC+TGG 0.546070 3_4:-52610935 Msa0506340:CDS
GACTACAGACGGAAGACTTG+AGG 0.549307 3_4:-52612094 Msa0506340:CDS
GGAAATGAGAATCTTCCATC+GGG 0.550758 3_4:-52610415 Msa0506340:CDS
ACTTGCGAGTCATCGCGATT+GGG 0.551611 3_4:+52608181 None:intergenic
GTATCTCCTCCCTTTCATCA+AGG 0.552113 3_4:-52612066 Msa0506340:CDS
GGAGGAAGAAGAGCATCAAC+CGG 0.553613 3_4:+52609096 None:intergenic
TTTATGAGTAATGTTGATGA+AGG 0.560479 3_4:-52612426 Msa0506340:CDS
TTTGCTTGGTGAAGATCTCA+AGG 0.562797 3_4:-52607676 None:intergenic
AACTCTTTCCCACCATCTGG+TGG 0.563581 3_4:-52612120 Msa0506340:CDS
CATCGACCCAAAATAATGCA+AGG 0.564184 3_4:-52612482 Msa0506340:CDS
GCCAACCAGTTTGTTGACGA+TGG 0.565303 3_4:+52613878 None:intergenic
TGTGTTCATGAATGGAAGAA+AGG 0.567539 3_4:-52615341 Msa0506340:CDS
TCTTCAGCGCCTCTTCATCT+GGG 0.569422 3_4:-52609867 Msa0506340:intron
CCTCATATTACACACTCTGA+AGG 0.570324 3_4:-52611070 Msa0506340:CDS
TGATTGATGGGTTCTGACAT+TGG 0.570447 3_4:-52615380 Msa0506340:exon
AAAATGTCTGGGATACAAGC+AGG 0.570539 3_4:-52609056 Msa0506340:intron
ATCCTCACCATTAGATTGAG+TGG 0.573526 3_4:+52608045 None:intergenic
TCTGTAGTCTCTCCACCAGA+TGG 0.577437 3_4:+52612108 None:intergenic
TCATGAATGGAAGAAAGGGT+GGG 0.579128 3_4:-52615336 Msa0506340:CDS
GATGGGTTCTGACATTGGTA+TGG 0.579449 3_4:-52615375 Msa0506340:CDS
TAGAAAATAATAGACCAGCA+TGG 0.580283 3_4:-52612215 Msa0506340:CDS
CAGATCTTCATGTTCCGCAC+CGG 0.581032 3_4:-52608929 Msa0506340:CDS
CTCCGTTCACCAAATGGTAA+CGG 0.581184 3_4:-52610373 Msa0506340:CDS
ACTACGCATCCACTGTGGAT+AGG 0.582032 3_4:+52613741 None:intergenic
GAACAAAGAAAGAAGAGATG+AGG 0.583288 3_4:-52607978 Msa0506340:CDS
GGAAGTATAGGACGAGATCT+CGG 0.585045 3_4:+52612042 None:intergenic
AGTAGTGCCATTGTTTGAGA+AGG 0.585604 3_4:-52611329 Msa0506340:CDS
TATCTCCTCCCTTTCATCAA+GGG 0.585643 3_4:-52612065 Msa0506340:CDS
TTTCGTGGTGGCTCCAGCTG+CGG 0.585946 3_4:+52608537 None:intergenic
GACATGTTCGGAAAATGTCT+GGG 0.586198 3_4:-52609067 Msa0506340:CDS
TAGGCCGTCATTCAGGGAAG+GGG 0.586518 3_4:-52612295 Msa0506340:CDS
TTCACATCTTGGACCCGCAA+AGG 0.587006 3_4:+52611043 None:intergenic
CTATAAACAAACCTCAGCAC+AGG 0.588044 3_4:+52611255 None:intergenic
CACACGTTGCAAGTACATGT+TGG 0.588233 3_4:+52608442 None:intergenic
AATAGAGGTCAAGTTGAGGT+TGG 0.588262 3_4:-52608241 Msa0506340:CDS
GCTCAACTTTGCTTCAAGTG+CGG 0.588515 3_4:-52615293 Msa0506340:CDS
TTTGCGGGTCCAAGATGTGA+AGG 0.588681 3_4:-52611041 Msa0506340:CDS
TCTCCCAAAAGCCTGTGCTG+AGG 0.589766 3_4:-52611266 Msa0506340:intron
TTAGGCCGTCATTCAGGGAA+GGG 0.591509 3_4:-52612296 Msa0506340:CDS
CTTCCCAAACTGTTAAAGAC+CGG 0.592604 3_4:-52612024 Msa0506340:CDS
ATCAAATTCCGTAGACACAC+AGG 0.593716 3_4:-52610608 Msa0506340:intron
TCCATCGTCAACAAACTGGT+TGG 0.594004 3_4:-52613879 Msa0506340:CDS
CCCAAACACATATTCAAAGA+CGG 0.594377 3_4:+52612159 None:intergenic
GTAGTCTCTCCACCAGATGG+TGG 0.595253 3_4:+52612111 None:intergenic
TCCGAACATGTCCACTTGGG+AGG 0.595376 3_4:+52609078 None:intergenic
ACGTCTGCACTTTCTAATGG+CGG 0.598708 3_4:-52610466 Msa0506340:CDS
GTGTTCATGAATGGAAGAAA+GGG 0.600298 3_4:-52615340 Msa0506340:CDS
ATCACCAGCACGTAAATCCA+TGG 0.602400 3_4:+52610931 None:intergenic
CTCCAGCTGCGGAATCAGCA+GGG 0.603654 3_4:+52608548 None:intergenic
ATCGACCCAAAATAATGCAA+GGG 0.604714 3_4:-52612481 Msa0506340:CDS
GGACTCTTACCCAGATGAAG+AGG 0.605539 3_4:+52609858 None:intergenic
CTGTTCGAGTATCTTGACTT+CGG 0.606779 3_4:-52613708 Msa0506340:CDS
GTTAGGCCGTCATTCAGGGA+AGG 0.607605 3_4:-52612297 Msa0506340:CDS
AGTGAAAAGAATCTGTCTTG+AGG 0.609919 3_4:-52607935 Msa0506340:exon
CAATCGCGATGACTCGCAAG+TGG 0.610051 3_4:-52608179 Msa0506340:CDS
TGGAAATGAGAATCTTCCAT+CGG 0.610250 3_4:-52610416 Msa0506340:CDS
GTCCAGGGTGAAGGAACAGT+GGG 0.610789 3_4:-52609154 Msa0506340:intron
ATTTAGTCGGATAGATCCTG+GGG 0.615648 3_4:-52610659 Msa0506340:CDS
ACGGTGTCTAGGATGTTTCG+TGG 0.616806 3_4:+52608522 None:intergenic
TAGTCTCTCCACCAGATGGT+GGG 0.617495 3_4:+52612112 None:intergenic
ACCGGACGAGCTGAGCTCAA+GGG 0.618173 3_4:-52608911 Msa0506340:CDS
GGCCACTCAATCTAATGGTG+AGG 0.620775 3_4:-52608047 Msa0506340:CDS
TGAGCTCAGCTCGTCCGGTG+CGG 0.620796 3_4:+52608915 None:intergenic
AGCAGGATGTACGTATTGGA+GGG 0.621631 3_4:-52610974 Msa0506340:CDS
CTCGGCCCTTGATGAAAGGG+AGG 0.622138 3_4:+52612060 None:intergenic
CAATACAAGAACAGCCGGGA+CGG 0.625906 3_4:+52608503 None:intergenic
TATGGAGTTGAGACTTACAT+GGG 0.625949 3_4:-52610161 Msa0506340:CDS
AGTGGGTATGGGATTTGATG+AGG 0.626012 3_4:+52615787 None:intergenic
TGTGTACGACCGTGAAGCGT+CGG 0.626839 3_4:-52608423 Msa0506340:CDS
GCGAATCCTTTGGAAAACGA+AGG 0.630328 3_4:-52608271 Msa0506340:CDS
CGTCCAGGGTGAAGGAACAG+TGG 0.639116 3_4:-52609155 Msa0506340:intron
GCCAAGCATTGTCACAATCG+AGG 0.639692 3_4:-52610098 Msa0506340:CDS
GCGAGAGCGTCTAAGCCAGA+AGG 0.639894 3_4:+52608604 None:intergenic
GGGTGGGGTTTACGATCTGG+TGG 0.639993 3_4:-52615320 Msa0506340:CDS
ATCCATGGCCTGTATACAAG+GGG 0.641805 3_4:+52610946 None:intergenic
CCAGGAGGCCGAGCAATACG+TGG 0.643456 3_4:+52611958 None:intergenic
TTCGAGTATCTTGACTTCGG+CGG 0.643639 3_4:-52613705 Msa0506340:CDS
GACGAGTCAGATACCAATGG+TGG 0.646113 3_4:-52608310 Msa0506340:CDS
TCGACACAATTACTTCCCGA+TGG 0.646900 3_4:+52610400 None:intergenic
AATCCTTTGGAAAACGAAGG+AGG 0.647862 3_4:-52608268 Msa0506340:CDS
AATCCATGGCCTGTATACAA+GGG 0.649731 3_4:+52610945 None:intergenic
ATGCTTGGCTTGACACTGGG+CGG 0.650343 3_4:+52610112 None:intergenic
GTATCCCCTTCCCTGAATGA+CGG 0.651045 3_4:+52612291 None:intergenic
AAAGTTAATGACTGAACAGG+CGG 0.651260 3_4:+52612246 None:intergenic
CAGTCCGCTGTCAAAATGAG+CGG 0.652887 3_4:+52612449 None:intergenic
AGAGTGTAACATTTGCAACA+AGG 0.654770 3_4:-52613854 Msa0506340:intron
GCTCCAGTAACCAAATGTGA+AGG 0.655029 3_4:+52610322 None:intergenic
ATTAATATGAACCAAAATGG+CGG 0.658414 3_4:-52608118 Msa0506340:CDS
ACTAAATAGAGGTCAAGTTG+AGG 0.658544 3_4:-52608245 Msa0506340:CDS
CTCAAACAATGGCACTACTG+TGG 0.661874 3_4:+52611333 None:intergenic
GTTAATACTGAAATGCAGGA+AGG 0.667799 3_4:-52608085 Msa0506340:CDS
AAACATCCTAGACACCGTCC+CGG 0.669264 3_4:-52608517 Msa0506340:CDS
TCTGGTGGAGAGACTACAGA+CGG 0.671314 3_4:-52612105 Msa0506340:CDS
TGTGTTTGGGAAACCCGTCA+GGG 0.671474 3_4:-52612146 Msa0506340:CDS
GCATGCATGAATCAAATGCG+AGG 0.672254 3_4:-52612182 Msa0506340:CDS
TTGCGGGTCCAAGATGTGAA+GGG 0.674468 3_4:-52611040 Msa0506340:CDS
GTGTGCATTCAGCCACCAAG+CGG 0.679152 3_4:-52608481 Msa0506340:CDS
GTTCTGCAGCCTATCCACAG+TGG 0.681151 3_4:-52613750 Msa0506340:intron
CACACAATACAAGAACAGCC+GGG 0.682528 3_4:+52608499 None:intergenic
GTTGACGAGTCAGATACCAA+TGG 0.701417 3_4:-52608313 Msa0506340:CDS
TGAGTGCCAGTGATGCAGGT+CGG 0.705207 3_4:-52611303 Msa0506340:CDS
GTGTCTAGGATGTTTCGTGG+TGG 0.708007 3_4:+52608525 None:intergenic
TTACCCCTCCCATCACCAGG+AGG 0.730237 3_4:+52611943 None:intergenic
TAGATACTACGCATCCACTG+TGG 0.761062 3_4:+52613736 None:intergenic
TTTAGTCGGATAGATCCTGG+GGG 0.790573 3_4:-52610658 Msa0506340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTAAGTATAAAAATATA+TGG - chr3_4:52608945-52608964 Msa0506340:intron 10.0%
!! CAATTAATATAATCTAAAAA+AGG + chr3_4:52609003-52609022 None:intergenic 10.0%
!!! TTGGTTAATGTTTTTTTTTT+TGG - chr3_4:52608016-52608035 Msa0506340:CDS 15.0%
!! TTTACATCAAAAACAATAAA+GGG + chr3_4:52608061-52608080 None:intergenic 15.0%
!! ATTTACATCAAAAACAATAA+AGG + chr3_4:52608062-52608081 None:intergenic 15.0%
!!! TTAGATTCTAATTTTAGTTT+TGG - chr3_4:52608345-52608364 Msa0506340:CDS 15.0%
!!! TAGATTCTAATTTTAGTTTT+GGG - chr3_4:52608346-52608365 Msa0506340:CDS 15.0%
!!! TTTATGATTCTTGATTTTTT+TGG - chr3_4:52608404-52608423 Msa0506340:CDS 15.0%
!! ATTAAACAAAAATTAACCAT+AGG + chr3_4:52609993-52610012 None:intergenic 15.0%
!! TAACAACTAATTACTAATAT+TGG - chr3_4:52610620-52610639 Msa0506340:CDS 15.0%
!! TGAACATAATTAGAAAAATA+AGG + chr3_4:52610863-52610882 None:intergenic 15.0%
!! AATTATAAATGTCAGTATAA+AGG + chr3_4:52611732-52611751 None:intergenic 15.0%
!!! TTTAAAACGAGTTATTAAAT+AGG - chr3_4:52612086-52612105 Msa0506340:CDS 15.0%
!! TTAAAACGAGTTATTAAATA+GGG - chr3_4:52612087-52612106 Msa0506340:CDS 15.0%
!!! AAATTTTGAAACTTTATGCA+TGG - chr3_4:52608078-52608097 Msa0506340:CDS 20.0%
!!! TTTTGATTTGATTTTGACTT+TGG - chr3_4:52608143-52608162 Msa0506340:CDS 20.0%
!!! AAATTTGGAATTTTGATTGA+TGG - chr3_4:52608186-52608205 Msa0506340:CDS 20.0%
!!! AATTTGGAATTTTGATTGAT+GGG - chr3_4:52608187-52608206 Msa0506340:CDS 20.0%
!!! AGATTCTAATTTTAGTTTTG+GGG - chr3_4:52608347-52608366 Msa0506340:CDS 20.0%
!!! TTGGATTTTGATAATCTAAT+TGG - chr3_4:52608423-52608442 Msa0506340:CDS 20.0%
!! TATCATCTAATTTAGTCATT+AGG + chr3_4:52608749-52608768 None:intergenic 20.0%
!! TAATGACTAAATTAGATGAT+AGG - chr3_4:52608748-52608767 Msa0506340:intron 20.0%
!! TATTAAATGCTTAACTGTAT+AGG - chr3_4:52609023-52609042 Msa0506340:intron 20.0%
!! ATCATAAATAAACCATTTGA+TGG + chr3_4:52609173-52609192 None:intergenic 20.0%
!! TCAAATGGTTTATTTATGAT+AGG - chr3_4:52609173-52609192 Msa0506340:intron 20.0%
!! TTAAGTTCTATTTGGATTAA+TGG + chr3_4:52609529-52609548 None:intergenic 20.0%
!! GAATATACTTAAGTTCTATT+TGG + chr3_4:52609537-52609556 None:intergenic 20.0%
!! TAAACTTACCATATTTAGTT+GGG + chr3_4:52609929-52609948 None:intergenic 20.0%
!! TTAAACTTACCATATTTAGT+TGG + chr3_4:52609930-52609949 None:intergenic 20.0%
!!! GTTTCGAAGATTTTTTTTAA+TGG - chr3_4:52610274-52610293 Msa0506340:CDS 20.0%
!! ATGTAAAAATGACAATTTCA+AGG - chr3_4:52610440-52610459 Msa0506340:CDS 20.0%
!! ATAAGTTCTTTATCCAAAAT+GGG + chr3_4:52610493-52610512 None:intergenic 20.0%
!! AATAAGTTCTTTATCCAAAA+TGG + chr3_4:52610494-52610513 None:intergenic 20.0%
!!! ATAATAAGAGCTTTATGTAT+AGG - chr3_4:52610525-52610544 Msa0506340:intron 20.0%
!!! TAATAAGAGCTTTATGTATA+GGG - chr3_4:52610526-52610545 Msa0506340:intron 20.0%
!! TAGTAATTAGTTGTTATGTT+CGG + chr3_4:52610616-52610635 None:intergenic 20.0%
!!! TAAACACTTTTTTTTTGCAA+CGG + chr3_4:52610646-52610665 None:intergenic 20.0%
!!! TTTTTCAGTTTCTATATTCA+TGG + chr3_4:52611586-52611605 None:intergenic 20.0%
!! ATGAATATAGAAACTGAAAA+AGG - chr3_4:52611585-52611604 Msa0506340:intron 20.0%
!! TGAATATAGAAACTGAAAAA+GGG - chr3_4:52611586-52611605 Msa0506340:intron 20.0%
!!! ACTGACATTTATAATTTTAG+AGG - chr3_4:52611736-52611755 Msa0506340:intron 20.0%
!! TAAAGATAAAAAAGGAAACA+CGG + chr3_4:52612376-52612395 None:intergenic 20.0%
!! CATTCAGATAAAGATAAAAA+AGG + chr3_4:52612384-52612403 None:intergenic 20.0%
!!! ACATCTTTACTTTTTGTTTT+TGG - chr3_4:52613046-52613065 Msa0506340:intron 20.0%
!!! TTTTTGGTGAATATGATTAA+CGG - chr3_4:52613062-52613081 Msa0506340:intron 20.0%
!! CGGCTATTATTTAAATAAAT+AGG - chr3_4:52613082-52613101 Msa0506340:intron 20.0%
!! TTTGTTTATTAGCTATTGTA+AGG - chr3_4:52613571-52613590 Msa0506340:intron 20.0%
!! GTTGCATTCATAATATTATT+TGG - chr3_4:52614784-52614803 Msa0506340:intron 20.0%
!! AAAACTTAGTGATCATATAT+GGG - chr3_4:52615433-52615452 Msa0506340:intron 20.0%
!! CATATTAATATGAACCAAAA+TGG - chr3_4:52615458-52615477 Msa0506340:intron 20.0%
!!! AGTTTGCTTTATTTTTCAAA+AGG - chr3_4:52615732-52615751 Msa0506340:intron 20.0%
!!! GTTTGCTTTATTTTTCAAAA+GGG - chr3_4:52615733-52615752 Msa0506340:intron 20.0%
!!! TTTTTATTCAAGAGTGAAAA+AGG - chr3_4:52615824-52615843 Msa0506340:five_prime_UTR 20.0%
!!! TTTTATTCAAGAGTGAAAAA+GGG - chr3_4:52615825-52615844 Msa0506340:five_prime_UTR 20.0%
! CTCAAATCTATGTATTCAAA+AGG + chr3_4:52607889-52607908 None:intergenic 25.0%
! ATTATTGAGTTTGAGGATTA+TGG - chr3_4:52608110-52608129 Msa0506340:CDS 25.0%
! TTATTGAGTTTGAGGATTAT+GGG - chr3_4:52608111-52608130 Msa0506340:CDS 25.0%
!!! TTTGATTTTGACTTTGGTTT+TGG - chr3_4:52608149-52608168 Msa0506340:CDS 25.0%
!!! TTGATTTTGACTTTGGTTTT+GGG - chr3_4:52608150-52608169 Msa0506340:CDS 25.0%
! CATAGCAAAATCAAAGAAAA+AGG + chr3_4:52608324-52608343 None:intergenic 25.0%
! AGGATCAATGTATCTAATTT+GGG - chr3_4:52608716-52608735 Msa0506340:intron 25.0%
!!! TATTCTGTTGACTGATTTTT+CGG - chr3_4:52608867-52608886 Msa0506340:intron 25.0%
! TTTATACTTACAATGTGTCA+AGG + chr3_4:52608939-52608958 None:intergenic 25.0%
! AGGAAATATATTTGCCATAT+TGG + chr3_4:52608983-52609002 None:intergenic 25.0%
!! TTTTAGATACTTCCATCAAA+TGG - chr3_4:52609158-52609177 Msa0506340:intron 25.0%
!! AAAACCAAAAGTATAAGAGA+AGG + chr3_4:52609578-52609597 None:intergenic 25.0%
! AAATACTTCCCAACTAAATA+TGG - chr3_4:52609918-52609937 Msa0506340:intron 25.0%
! ATGGGAAAAAAAAATCAACA+GGG + chr3_4:52609964-52609983 None:intergenic 25.0%
! AATGGGAAAAAAAAATCAAC+AGG + chr3_4:52609965-52609984 None:intergenic 25.0%
! ATTAACCATAGGTTACAAAT+GGG + chr3_4:52609982-52610001 None:intergenic 25.0%
! AATTAACCATAGGTTACAAA+TGG + chr3_4:52609983-52610002 None:intergenic 25.0%
! TATCACTAAAATAATCACGA+AGG + chr3_4:52610140-52610159 None:intergenic 25.0%
!!! TCGTGATTATTTTAGTGATA+TGG - chr3_4:52610140-52610159 Msa0506340:CDS 25.0%
! TTGTGAGTTGTATCAAAATT+TGG - chr3_4:52610172-52610191 Msa0506340:CDS 25.0%
! TGGTTTATGATAGAACATTA+TGG - chr3_4:52610192-52610211 Msa0506340:CDS 25.0%
!! TTTGTGTTATTACGTTTACT+TGG - chr3_4:52610309-52610328 Msa0506340:CDS 25.0%
! AGTAATTAGTTGTTATGTTC+GGG + chr3_4:52610615-52610634 None:intergenic 25.0%
! GTAATACTGAAAATCCTAAA+TGG - chr3_4:52611067-52611086 Msa0506340:CDS 25.0%
!! AATATCCCTTGCATTATTTT+GGG + chr3_4:52611106-52611125 None:intergenic 25.0%
!! TTTATGAGTAATGTTGATGA+AGG - chr3_4:52611153-52611172 Msa0506340:intron 25.0%
!! GATGTAATCATGTTGTTTAT+CGG + chr3_4:52611240-52611259 None:intergenic 25.0%
! AACAACATGATTACATCTAA+TGG - chr3_4:52611243-52611262 Msa0506340:intron 25.0%
! ACAACATGATTACATCTAAT+GGG - chr3_4:52611244-52611263 Msa0506340:intron 25.0%
!!! TTCTGGTTTATATGAAATTG+TGG + chr3_4:52611882-52611901 None:intergenic 25.0%
! ATTACATAGCTACAAATTTC+TGG + chr3_4:52611899-52611918 None:intergenic 25.0%
! TAGCTATGTAATATGAAAAC+TGG - chr3_4:52611907-52611926 Msa0506340:CDS 25.0%
! AGAACTATAAATTATGAGCA+GGG + chr3_4:52612149-52612168 None:intergenic 25.0%
! AAGAACTATAAATTATGAGC+AGG + chr3_4:52612150-52612169 None:intergenic 25.0%
! TATCTTTATCTGAATGAGTA+TGG - chr3_4:52612388-52612407 Msa0506340:CDS 25.0%
! GTAACAGATCAATTCTATAA+GGG + chr3_4:52612783-52612802 None:intergenic 25.0%
! TGTAACAGATCAATTCTATA+AGG + chr3_4:52612784-52612803 None:intergenic 25.0%
!! ATTTTGCAGTTACATTTAGT+CGG - chr3_4:52612907-52612926 Msa0506340:intron 25.0%
! ATAATTCGAAGAAAATACCA+TGG + chr3_4:52613026-52613045 None:intergenic 25.0%
!!! TAAGCAATCTCTTACTTTTA+AGG + chr3_4:52613382-52613401 None:intergenic 25.0%
! AAAAGTAAGAGATTGCTTAT+TGG - chr3_4:52613383-52613402 Msa0506340:intron 25.0%
!!! TATTGGTAATGATGATTCTA+TGG - chr3_4:52613400-52613419 Msa0506340:intron 25.0%
! GAATGTAAACTGATATAGTT+TGG - chr3_4:52613597-52613616 Msa0506340:intron 25.0%
! ATCCAAATATGCAAAAAGTT+TGG + chr3_4:52613745-52613764 None:intergenic 25.0%
!! AACTTTTTGCATATTTGGAT+TGG - chr3_4:52613745-52613764 Msa0506340:intron 25.0%
!! TTTTCATAAACTCTCATGTA+GGG + chr3_4:52613879-52613898 None:intergenic 25.0%
! TATTCTAGATACAACTAACA+TGG + chr3_4:52614076-52614095 None:intergenic 25.0%
! TATAAGTGCTTATGTATGAT+TGG - chr3_4:52614114-52614133 Msa0506340:intron 25.0%
!! AACTGTTTTCGGATTATTAT+AGG + chr3_4:52614220-52614239 None:intergenic 25.0%
!!! TTTTGAAAATTCCGTGAAAA+CGG + chr3_4:52614251-52614270 None:intergenic 25.0%
!! TAAGTTGAAATAAGCTCTTT+CGG - chr3_4:52614299-52614318 Msa0506340:intron 25.0%
! GGTAATACTGGTATTATTAA+TGG + chr3_4:52614553-52614572 None:intergenic 25.0%
!!! AATCTTTTGAAATCTAGCAA+AGG - chr3_4:52614699-52614718 Msa0506340:intron 25.0%
! CAAAGATCTTATCAAAAACA+CGG + chr3_4:52614739-52614758 None:intergenic 25.0%
! CAAAACTTAGTGATCATATA+TGG - chr3_4:52615432-52615451 Msa0506340:intron 25.0%
! ATTAATATGAACCAAAATGG+CGG - chr3_4:52615461-52615480 Msa0506340:intron 25.0%
!!! AAAAATTCTAGCTCAAACAA+GGG + chr3_4:52615682-52615701 None:intergenic 25.0%
!!! TAAAAATTCTAGCTCAAACA+AGG + chr3_4:52615683-52615702 None:intergenic 25.0%
! TTTATTCAAGAGTGAAAAAG+GGG - chr3_4:52615826-52615845 Msa0506340:five_prime_UTR 25.0%
! AGCAAAAATAAAATGGATAG+TGG + chr3_4:52615889-52615908 None:intergenic 25.0%
!!! CTATCCATTTTATTTTTGCT+TGG - chr3_4:52615889-52615908 Msa0506340:five_prime_UTR 25.0%
! TTCACCAAGCAAAAATAAAA+TGG + chr3_4:52615896-52615915 None:intergenic 25.0%
! AACCTAGGATTTAGGATAAT+GGG + chr3_4:52607963-52607982 None:intergenic 30.0%
! AAACCTAGGATTTAGGATAA+TGG + chr3_4:52607964-52607983 None:intergenic 30.0%
GTGAGTTATTATTGAGTTTG+AGG - chr3_4:52608103-52608122 Msa0506340:CDS 30.0%
!! GGTATTTTTCAGCTGAAATT+TGG - chr3_4:52608171-52608190 Msa0506340:CDS 30.0%
TATATCCTTTCTTACCATTC+CGG - chr3_4:52608462-52608481 Msa0506340:CDS 30.0%
TATGTTGTGATTGTGTATTG+TGG - chr3_4:52608644-52608663 Msa0506340:CDS 30.0%
GAGGATCAATGTATCTAATT+TGG - chr3_4:52608715-52608734 Msa0506340:intron 30.0%
! GGTAATTTTAGATGCCAATA+TGG - chr3_4:52608966-52608985 Msa0506340:intron 30.0%
ATCCAGTCAACTTAATTAAG+AGG - chr3_4:52609088-52609107 Msa0506340:CDS 30.0%
TCCAGTCAACTTAATTAAGA+GGG - chr3_4:52609089-52609108 Msa0506340:CDS 30.0%
! CTTGCAATTTTGCAAATACA+GGG + chr3_4:52609484-52609503 None:intergenic 30.0%
! TCTTCCTTCTCTTATACTTT+TGG - chr3_4:52609571-52609590 Msa0506340:intron 30.0%
ACAAAAAACTGAACTCTCAA+AGG + chr3_4:52609673-52609692 None:intergenic 30.0%
TCATTGAAATCTGTTTGACT+TGG - chr3_4:52609807-52609826 Msa0506340:intron 30.0%
! TTTTTCCCATTTGTAACCTA+TGG - chr3_4:52609974-52609993 Msa0506340:intron 30.0%
CACATTATTGCATACGATAT+TGG - chr3_4:52610101-52610120 Msa0506340:CDS 30.0%
CGTAATAACACAAAAATTGC+TGG + chr3_4:52610303-52610322 None:intergenic 30.0%
!! TTACTTGGCTTTTGAATGTA+TGG - chr3_4:52610324-52610343 Msa0506340:CDS 30.0%
!! TACTTGGCTTTTGAATGTAT+GGG - chr3_4:52610325-52610344 Msa0506340:CDS 30.0%
AAAAAGCTGAATACAGACTA+TGG - chr3_4:52610743-52610762 Msa0506340:intron 30.0%
AAACTGTTAAAGAGAGCTTA+AGG + chr3_4:52610795-52610814 None:intergenic 30.0%
!!! ATTATTTTGGGTCGATGAAA+CGG + chr3_4:52611094-52611113 None:intergenic 30.0%
! GAATATCCCTTGCATTATTT+TGG + chr3_4:52611107-52611126 None:intergenic 30.0%
GGAAAAACAATCAAGAAGTT+AGG - chr3_4:52611265-52611284 Msa0506340:intron 30.0%
! TGGTCTATTATTTTCTAACG+TGG + chr3_4:52611361-52611380 None:intergenic 30.0%
TAGAAAATAATAGACCAGCA+TGG - chr3_4:52611364-52611383 Msa0506340:intron 30.0%
AGAAAATAATAGACCAGCAT+GGG - chr3_4:52611365-52611384 Msa0506340:intron 30.0%
! TTTAACAGTTTGGGAAGTAT+AGG + chr3_4:52611552-52611571 None:intergenic 30.0%
CAGTTTCTATATTCATGGTA+AGG + chr3_4:52611581-52611600 None:intergenic 30.0%
ATCAGTTACTTCCTAGATAT+TGG - chr3_4:52611661-52611680 Msa0506340:intron 30.0%
GGATAAGATCAAGATATTCT+AGG - chr3_4:52611757-52611776 Msa0506340:intron 30.0%
GGTTTATATGAAATTGTGGA+TGG + chr3_4:52611878-52611897 None:intergenic 30.0%
AACTAACACTCTTATTGAGT+AGG + chr3_4:52612039-52612058 None:intergenic 30.0%
!! CAATAAGAGTGTTAGTTTGA+TGG - chr3_4:52612042-52612061 Msa0506340:CDS 30.0%
AACTGTTATCGTTACATCAA+GGG + chr3_4:52612220-52612239 None:intergenic 30.0%
AAACTGTTATCGTTACATCA+AGG + chr3_4:52612221-52612240 None:intergenic 30.0%
CGAAAAACAACTACAGAAAT+TGG + chr3_4:52612416-52612435 None:intergenic 30.0%
! GGACTTTTCAATTCAGATTT+TGG - chr3_4:52612570-52612589 Msa0506340:intron 30.0%
AAATACCATGGACAGTAAAA+TGG + chr3_4:52613014-52613033 None:intergenic 30.0%
AACTGTGCTACATTTCATTT+AGG - chr3_4:52613662-52613681 Msa0506340:CDS 30.0%
TTGTTCTCTTTCCAAAAACT+GGG + chr3_4:52613692-52613711 None:intergenic 30.0%
ATTGTTCTCTTTCCAAAAAC+TGG + chr3_4:52613693-52613712 None:intergenic 30.0%
! GTCCAAACTTTTTGCATATT+TGG - chr3_4:52613740-52613759 Msa0506340:CDS 30.0%
! GTTTTCATAAACTCTCATGT+AGG + chr3_4:52613880-52613899 None:intergenic 30.0%
ATTAAGCTGTGTTTACAAAC+AGG - chr3_4:52613992-52614011 Msa0506340:intron 30.0%
TTAAGCTGTGTTTACAAACA+GGG - chr3_4:52613993-52614012 Msa0506340:intron 30.0%
AGCTGTTCGAAGAAATTTAT+AGG + chr3_4:52614027-52614046 None:intergenic 30.0%
!!! ACTACAGTTTGATTTTTTCC+TGG - chr3_4:52614048-52614067 Msa0506340:intron 30.0%
CTATAGTTGAAGAGAAAATG+AGG - chr3_4:52614140-52614159 Msa0506340:intron 30.0%
TATTGCATAACATAATCACG+TGG + chr3_4:52614281-52614300 None:intergenic 30.0%
TGAAGCATAAATAGGATCAA+AGG + chr3_4:52614330-52614349 None:intergenic 30.0%
TGCTTTCATGAAGCATAAAT+AGG + chr3_4:52614338-52614357 None:intergenic 30.0%
!! TTATGCTTCATGAAAGCATT+TGG - chr3_4:52614340-52614359 Msa0506340:intron 30.0%
! TTGGAATTATCATGATGATG+TGG - chr3_4:52614359-52614378 Msa0506340:intron 30.0%
! AATGTGATGATTGCTCTAAA+TGG - chr3_4:52614451-52614470 Msa0506340:intron 30.0%
!!! TACCAGTATTACCACTTTTT+TGG - chr3_4:52614560-52614579 Msa0506340:intron 30.0%
TTCCAAAAAAGTGGTAATAC+TGG + chr3_4:52614565-52614584 None:intergenic 30.0%
TGGTCTAAATTCCAAAAAAG+TGG + chr3_4:52614574-52614593 None:intergenic 30.0%
AATTTAGACCAGTCTTCATA+TGG - chr3_4:52614583-52614602 Msa0506340:intron 30.0%
ATTTAGACCAGTCTTCATAT+GGG - chr3_4:52614584-52614603 Msa0506340:intron 30.0%
TATTATTATACTCACCAGAG+AGG + chr3_4:52614862-52614881 None:intergenic 30.0%
TAATAATTCCTGAATCCTTC+TGG - chr3_4:52614880-52614899 Msa0506340:intron 30.0%
! CAAGAGATTTTCTCCTAAAA+CGG + chr3_4:52615009-52615028 None:intergenic 30.0%
!!! GTTTTAGGAGAAAATCTCTT+GGG - chr3_4:52615008-52615027 Msa0506340:intron 30.0%
!!! GTTGTGAATGTGTTCTTTTT+TGG + chr3_4:52615243-52615262 None:intergenic 30.0%
ATTTCAGTATTAACGGTTCT+TGG + chr3_4:52615488-52615507 None:intergenic 30.0%
TTCCTGCATTTCAGTATTAA+CGG + chr3_4:52615495-52615514 None:intergenic 30.0%
TTATTCAAGAGTGAAAAAGG+GGG - chr3_4:52615827-52615846 Msa0506340:five_prime_UTR 30.0%
!! TTTTCTCTCTCTAAAAACCC+AGG - chr3_4:52607820-52607839 Msa0506340:three_prime_UTR 35.0%
GTTGAAGAAGAAATTGACCT+GGG + chr3_4:52607840-52607859 None:intergenic 35.0%
TGTTGAAGAAGAAATTGACC+TGG + chr3_4:52607841-52607860 None:intergenic 35.0%
! AATCTAAGACAAGAGCAATG+AGG + chr3_4:52607864-52607883 None:intergenic 35.0%
CAAAAGGAAACCTAGGATTT+AGG + chr3_4:52607971-52607990 None:intergenic 35.0%
! AAATCCTAGGTTTCCTTTTG+TGG - chr3_4:52607971-52607990 Msa0506340:CDS 35.0%
! AATCCTAGGTTTCCTTTTGT+GGG - chr3_4:52607972-52607991 Msa0506340:CDS 35.0%
TCTGACATTGGTATGGTAAA+TGG - chr3_4:52608211-52608230 Msa0506340:CDS 35.0%
TGTGTTCATGAATGGAAGAA+AGG - chr3_4:52608238-52608257 Msa0506340:CDS 35.0%
GTGTTCATGAATGGAAGAAA+GGG - chr3_4:52608239-52608258 Msa0506340:CDS 35.0%
ATATCCTTTCTTACCATTCC+GGG - chr3_4:52608463-52608482 Msa0506340:CDS 35.0%
TGACTAAAATGTGAGCTGTT+TGG + chr3_4:52608523-52608542 None:intergenic 35.0%
TGATTGTGTATTGTGGAAGT+AGG - chr3_4:52608651-52608670 Msa0506340:CDS 35.0%
!! CTTATTGTTGTTTGATGACG+AGG - chr3_4:52608696-52608715 Msa0506340:intron 35.0%
ATTCCTCCATAAATCTAGCA+TGG + chr3_4:52608903-52608922 None:intergenic 35.0%
ATGCTAGATTTATGGAGGAA+TGG - chr3_4:52608902-52608921 Msa0506340:CDS 35.0%
GGATCAAATATCACACACAA+GGG + chr3_4:52609072-52609091 None:intergenic 35.0%
TGGATCAAATATCACACACA+AGG + chr3_4:52609073-52609092 None:intergenic 35.0%
!! TCCCTCTTAATTAAGTTGAC+TGG + chr3_4:52609093-52609112 None:intergenic 35.0%
ACTAATTGAGCTCAATCACT+TGG + chr3_4:52609303-52609322 None:intergenic 35.0%
TCTAACCAAGAATTGAACTC+AGG + chr3_4:52609363-52609382 None:intergenic 35.0%
CTCATAACCGTAGATTACTA+GGG - chr3_4:52609393-52609412 Msa0506340:intron 35.0%
! GCTTGCAATTTTGCAAATAC+AGG + chr3_4:52609485-52609504 None:intergenic 35.0%
AAATTCCATCGTCAACAAAC+TGG - chr3_4:52609696-52609715 Msa0506340:intron 35.0%
AGAGTGTAACATTTGCAACA+AGG - chr3_4:52609725-52609744 Msa0506340:intron 35.0%
CAAACAGATTTCAATGAGTG+AGG + chr3_4:52609804-52609823 None:intergenic 35.0%
ATAATCACGAAGGATAATCC+TGG + chr3_4:52610130-52610149 None:intergenic 35.0%
!!! GAAGCTTTTGCTTTAGAACT+TGG - chr3_4:52610467-52610486 Msa0506340:CDS 35.0%
!!! GCTTTTTTCGTAAGATCTCT+AGG + chr3_4:52610730-52610749 None:intergenic 35.0%
GAATACAGACTATGGACAAT+TGG - chr3_4:52610751-52610770 Msa0506340:intron 35.0%
GCTTATTTGAGCTTATCTAC+TGG + chr3_4:52610832-52610851 None:intergenic 35.0%
! TGGTTTTCTTTAGTTGCTCT+TGG - chr3_4:52610906-52610925 Msa0506340:intron 35.0%
!!! TTATTTTGGGTCGATGAAAC+GGG + chr3_4:52611093-52611112 None:intergenic 35.0%
ATCGACCCAAAATAATGCAA+GGG - chr3_4:52611098-52611117 Msa0506340:intron 35.0%
AAAGTTAATGACTGAACAGG+CGG + chr3_4:52611336-52611355 None:intergenic 35.0%
GCAAAAGTTAATGACTGAAC+AGG + chr3_4:52611339-52611358 None:intergenic 35.0%
CCCAAACACATATTCAAAGA+CGG + chr3_4:52611423-52611442 None:intergenic 35.0%
CCGTCTTTGAATATGTGTTT+GGG - chr3_4:52611420-52611439 Msa0506340:intron 35.0%
TTCTATATTCATGGTAAGGC+CGG + chr3_4:52611577-52611596 None:intergenic 35.0%
! TAGATATTGGCCTAGGATTA+CGG - chr3_4:52611674-52611693 Msa0506340:intron 35.0%
! TTCCTTGATGAAGTATCAGA+TGG - chr3_4:52611975-52611994 Msa0506340:CDS 35.0%
AACCATCTGATACTTCATCA+AGG + chr3_4:52611980-52611999 None:intergenic 35.0%
!! AAGAGTGTTAGTTTGATGGT+TGG - chr3_4:52612046-52612065 Msa0506340:CDS 35.0%
AAAAGGAAACACGGAAAACA+AGG + chr3_4:52612367-52612386 None:intergenic 35.0%
CGTGTCTTCAAGCTATAATT+TGG - chr3_4:52612458-52612477 Msa0506340:CDS 35.0%
TGGACTTCTTACAAAATTGC+AGG - chr3_4:52612478-52612497 Msa0506340:CDS 35.0%
ATTCATTACCCTTCACATCT+TGG + chr3_4:52612550-52612569 None:intergenic 35.0%
AAGATGTGAAGGGTAATGAA+TGG - chr3_4:52612549-52612568 Msa0506340:intron 35.0%
! TACATCCTGCTGTTGTTATT+AGG + chr3_4:52612596-52612615 None:intergenic 35.0%
AGTAATTGTGTGCAAAGTAG+AGG + chr3_4:52612697-52612716 None:intergenic 35.0%
CTCTCAAGTAAGAACAAATG+AGG + chr3_4:52612838-52612857 None:intergenic 35.0%
CTCATTTGTTCTTACTTGAG+AGG - chr3_4:52612836-52612855 Msa0506340:intron 35.0%
! CAAAACCATTTTACTGTCCA+TGG - chr3_4:52613006-52613025 Msa0506340:intron 35.0%
ATTCTCATTTCCACCAGAAA+AGG + chr3_4:52613156-52613175 None:intergenic 35.0%
TGGAAATGAGAATCTTCCAT+CGG - chr3_4:52613163-52613182 Msa0506340:intron 35.0%
AGTAACCAAATGTGAAGGTT+CGG + chr3_4:52613255-52613274 None:intergenic 35.0%
GATGACTAGCAATAATTCAC+TGG - chr3_4:52613310-52613329 Msa0506340:intron 35.0%
!!! TCTCTGAAGCTGAATTTTTC+TGG + chr3_4:52613337-52613356 None:intergenic 35.0%
AAGAAGAGGACTCGAAATAT+TGG - chr3_4:52613356-52613375 Msa0506340:intron 35.0%
TATGGAGTTGAGACTTACAT+GGG - chr3_4:52613418-52613437 Msa0506340:intron 35.0%
CATGTTCGAATTATATCACG+TGG - chr3_4:52613625-52613644 Msa0506340:intron 35.0%
TGTTCTCTTTCCAAAAACTG+GGG + chr3_4:52613691-52613710 None:intergenic 35.0%
TCACCGAAATAGCTTATACA+TGG - chr3_4:52613947-52613966 Msa0506340:intron 35.0%
CACCGAAATAGCTTATACAT+GGG - chr3_4:52613948-52613967 Msa0506340:intron 35.0%
TGCCCATGTATAAGCTATTT+CGG + chr3_4:52613953-52613972 None:intergenic 35.0%
TCTGCATAAGCTTGTATATG+TGG - chr3_4:52614169-52614188 Msa0506340:intron 35.0%
TATGTCAACTATTTCGTCCA+GGG - chr3_4:52614410-52614429 Msa0506340:intron 35.0%
CTCTAAATGGAGAAAGTTAC+CGG - chr3_4:52614464-52614483 Msa0506340:intron 35.0%
TTATCAAAAACACGGACAGA+AGG + chr3_4:52614731-52614750 None:intergenic 35.0%
AAATGTAACCAGAAGGATTC+AGG + chr3_4:52614891-52614910 None:intergenic 35.0%
! TGAATCCTTCTGGTTACATT+TGG - chr3_4:52614890-52614909 Msa0506340:intron 35.0%
!! TCACAGATTTTAAGAAGCGA+CGG - chr3_4:52614916-52614935 Msa0506340:intron 35.0%
!!! CGTTTTAGGAGAAAATCTCT+TGG - chr3_4:52615007-52615026 Msa0506340:intron 35.0%
!!! GTGAATGTGTTCTTTTTTGG+CGG + chr3_4:52615240-52615259 None:intergenic 35.0%
! ACTAAATAGAGGTCAAGTTG+AGG - chr3_4:52615334-52615353 Msa0506340:CDS 35.0%
AACCGTTAATACTGAAATGC+AGG - chr3_4:52615490-52615509 Msa0506340:intron 35.0%
GTTAATACTGAAATGCAGGA+AGG - chr3_4:52615494-52615513 Msa0506340:intron 35.0%
TCTTTCTTTGTTCCCAACAT+TGG + chr3_4:52615594-52615613 None:intergenic 35.0%
GAACAAAGAAAGAAGAGATG+AGG - chr3_4:52615601-52615620 Msa0506340:intron 35.0%
AGTGAAAAGAATCTGTCTTG+AGG - chr3_4:52615644-52615663 Msa0506340:intron 35.0%
! AAATGGATAGTGGTAAAGAC+AGG + chr3_4:52615879-52615898 None:intergenic 35.0%
AGAAAACGTGAAGTGGGTAT+GGG + chr3_4:52607806-52607825 None:intergenic 40.0%
AGAGAGAGAAAACGTGAAGT+GGG + chr3_4:52607812-52607831 None:intergenic 40.0%
TAGAGAGAGAAAACGTGAAG+TGG + chr3_4:52607813-52607832 None:intergenic 40.0%
GACCCATTATCCTAAATCCT+AGG - chr3_4:52607958-52607977 Msa0506340:CDS 40.0%
AACCAAGTCAAAGGTTGTCT+TGG - chr3_4:52607997-52608016 Msa0506340:CDS 40.0%
AACCAAGACAACCTTTGACT+TGG + chr3_4:52608002-52608021 None:intergenic 40.0%
!! TGATTGATGGGTTCTGACAT+TGG - chr3_4:52608199-52608218 Msa0506340:CDS 40.0%
ATGGTTCGTGTGTTCATGAA+TGG - chr3_4:52608230-52608249 Msa0506340:CDS 40.0%
TTCATGAATGGAAGAAAGGG+TGG - chr3_4:52608242-52608261 Msa0506340:CDS 40.0%
TCATGAATGGAAGAAAGGGT+GGG - chr3_4:52608243-52608262 Msa0506340:CDS 40.0%
AAATCCCGGAATGGTAAGAA+AGG + chr3_4:52608470-52608489 None:intergenic 40.0%
CAAACACAACCAGAAAATCC+CGG + chr3_4:52608484-52608503 None:intergenic 40.0%
TGTATTGTGGAAGTAGGAGT+AGG - chr3_4:52608657-52608676 Msa0506340:CDS 40.0%
TTCCTGCCATGCTAGATTTA+TGG - chr3_4:52608894-52608913 Msa0506340:CDS 40.0%
TTTATGGAGGAATGGAAGAG+TGG - chr3_4:52608910-52608929 Msa0506340:CDS 40.0%
AATCACTTGGTTAGGTAGTG+TGG + chr3_4:52609290-52609309 None:intergenic 40.0%
TTGAGCTCAATCACTTGGTT+AGG + chr3_4:52609298-52609317 None:intergenic 40.0%
GAGAACCTGAGTTCAATTCT+TGG - chr3_4:52609355-52609374 Msa0506340:intron 40.0%
CCTAGTAATCTACGGTTATG+AGG + chr3_4:52609395-52609414 None:intergenic 40.0%
CCTCATAACCGTAGATTACT+AGG - chr3_4:52609392-52609411 Msa0506340:intron 40.0%
AAGGATGCCCTAGTAATCTA+CGG + chr3_4:52609403-52609422 None:intergenic 40.0%
AGAGAAGGAAGATATGAGCA+GGG + chr3_4:52609563-52609582 None:intergenic 40.0%
AAGAGAAGGAAGATATGAGC+AGG + chr3_4:52609564-52609583 None:intergenic 40.0%
CTGTTCGAGTATCTTGACTT+CGG - chr3_4:52609871-52609890 Msa0506340:CDS 40.0%
ACGACTTGTCCTAATAAGTG+GGG + chr3_4:52610241-52610260 None:intergenic 40.0%
CACGACTTGTCCTAATAAGT+GGG + chr3_4:52610242-52610261 None:intergenic 40.0%
!!! CTTTAGAACTTGGCCCATTT+TGG - chr3_4:52610477-52610496 Msa0506340:CDS 40.0%
! AGAGCTTTATGTATAGGGAG+AGG - chr3_4:52610531-52610550 Msa0506340:intron 40.0%
! GAGCTTTATGTATAGGGAGA+GGG - chr3_4:52610532-52610551 Msa0506340:intron 40.0%
! AGCTTTATGTATAGGGAGAG+GGG - chr3_4:52610533-52610552 Msa0506340:intron 40.0%
! AATTATTGCTGCTTGCTCGT+TGG - chr3_4:52610886-52610905 Msa0506340:intron 40.0%
ACTGCACTAACAGAATACCA+AGG + chr3_4:52610932-52610951 None:intergenic 40.0%
CATCGACCCAAAATAATGCA+AGG - chr3_4:52611097-52611116 Msa0506340:intron 40.0%
TTATCGGAGCATGACTCATA+TGG + chr3_4:52611224-52611243 None:intergenic 40.0%
! ATGCTTTTAATCTCCCATGC+TGG + chr3_4:52611381-52611400 None:intergenic 40.0%
GCCGTCTTTGAATATGTGTT+TGG - chr3_4:52611419-52611438 Msa0506340:intron 40.0%
TATCTCCTCCCTTTCATCAA+GGG - chr3_4:52611514-52611533 Msa0506340:intron 40.0%
CTTCCCAAACTGTTAAAGAC+CGG - chr3_4:52611555-52611574 Msa0506340:intron 40.0%
TTTCTCAACCACGTATTGCT+CGG - chr3_4:52611613-52611632 Msa0506340:intron 40.0%
! TACTTCCTAGATATTGGCCT+AGG - chr3_4:52611667-52611686 Msa0506340:intron 40.0%
GTAATCCTAGGCCAATATCT+AGG + chr3_4:52611675-52611694 None:intergenic 40.0%
ACTAAGCTCAGAGTTAACCT+TGG - chr3_4:52612112-52612131 Msa0506340:CDS 40.0%
! AGTAGTGCCATTGTTTGAGA+AGG - chr3_4:52612250-52612269 Msa0506340:CDS 40.0%
CTATAAACAAACCTCAGCAC+AGG + chr3_4:52612327-52612346 None:intergenic 40.0%
CCTTCAGAGTGTGTAATATG+AGG + chr3_4:52612512-52612531 None:intergenic 40.0%
CCTCATATTACACACTCTGA+AGG - chr3_4:52612509-52612528 Msa0506340:CDS 40.0%
TTTGGCCTAATAACAACAGC+AGG - chr3_4:52612588-52612607 Msa0506340:intron 40.0%
AATCCATGGCCTGTATACAA+GGG + chr3_4:52612637-52612656 None:intergenic 40.0%
AAATCCATGGCCTGTATACA+AGG + chr3_4:52612638-52612657 None:intergenic 40.0%
ACATTTAGTCGGATAGATCC+TGG - chr3_4:52612918-52612937 Msa0506340:intron 40.0%
CATTTAGTCGGATAGATCCT+GGG - chr3_4:52612919-52612938 Msa0506340:intron 40.0%
ATTTAGTCGGATAGATCCTG+GGG - chr3_4:52612920-52612939 Msa0506340:intron 40.0%
ATCAAATTCCGTAGACACAC+AGG - chr3_4:52612971-52612990 Msa0506340:intron 40.0%
TCTACGTCTGCACTTTCTAA+TGG - chr3_4:52613110-52613129 Msa0506340:intron 40.0%
GGAAATGAGAATCTTCCATC+GGG - chr3_4:52613164-52613183 Msa0506340:intron 40.0%
AACGGAGAACTTCGCTTAAA+TGG - chr3_4:52613224-52613243 Msa0506340:intron 40.0%
GTAACCAAATGTGAAGGTTC+GGG + chr3_4:52613254-52613273 None:intergenic 40.0%
GAACCTTCACATTTGGTTAC+TGG - chr3_4:52613254-52613273 Msa0506340:intron 40.0%
! GGTTTGCTTAAAGCCGAAAA+TGG - chr3_4:52613284-52613303 Msa0506340:intron 40.0%
ATTCAGCTTCAGAGAAGAAG+AGG - chr3_4:52613342-52613361 Msa0506340:intron 40.0%
CTATGGAGTTGAGACTTACA+TGG - chr3_4:52613417-52613436 Msa0506340:intron 40.0%
! ATTTAGGAACCCCCAGTTTT+TGG - chr3_4:52613678-52613697 Msa0506340:CDS 40.0%
GTTCTCTTTCCAAAAACTGG+GGG + chr3_4:52613690-52613709 None:intergenic 40.0%
GATACAACTAACATGGATCC+AGG + chr3_4:52614069-52614088 None:intergenic 40.0%
! CGGCTTACTCAAACTGTTTT+CGG + chr3_4:52614231-52614250 None:intergenic 40.0%
!! GTTTGAGTAAGCCGTTTTCA+CGG - chr3_4:52614237-52614256 Msa0506340:intron 40.0%
CATAACATAATCACGTGGCT+CGG + chr3_4:52614276-52614295 None:intergenic 40.0%
GTATGTCAACTATTTCGTCC+AGG - chr3_4:52614409-52614428 Msa0506340:intron 40.0%
! TTTTCCGAACATGTCCACTT+GGG + chr3_4:52614507-52614526 None:intergenic 40.0%
! ATTTTCCGAACATGTCCACT+TGG + chr3_4:52614508-52614527 None:intergenic 40.0%
GACATGTTCGGAAAATGTCT+GGG - chr3_4:52614512-52614531 Msa0506340:intron 40.0%
! AAAATGTCTGGGATACAAGC+AGG - chr3_4:52614523-52614542 Msa0506340:intron 40.0%
TCACTATCCCATATGAAGAC+TGG + chr3_4:52614594-52614613 None:intergenic 40.0%
ATGCTGATGCTGACACAATT+CGG + chr3_4:52614815-52614834 None:intergenic 40.0%
CTTATTCTGTTTGTCCTCTC+TGG - chr3_4:52614845-52614864 Msa0506340:intron 40.0%
GAACACCAAATGTAACCAGA+AGG + chr3_4:52614898-52614917 None:intergenic 40.0%
TTCTCCTAAAACGGCTAAAC+TGG + chr3_4:52615000-52615019 None:intergenic 40.0%
!!! AATGTGTTCTTTTTTGGCGG+CGG + chr3_4:52615237-52615256 None:intergenic 40.0%
AAGAGAAGTTGCGAATCCTT+TGG - chr3_4:52615298-52615317 Msa0506340:CDS 40.0%
! AATCCTTTGGAAAACGAAGG+AGG - chr3_4:52615311-52615330 Msa0506340:CDS 40.0%
AACGAAGGAGGACTAAATAG+AGG - chr3_4:52615323-52615342 Msa0506340:CDS 40.0%
!! AATAGAGGTCAAGTTGAGGT+TGG - chr3_4:52615338-52615357 Msa0506340:CDS 40.0%
GGAAGGTCAACATTCTTCTT+TGG - chr3_4:52615511-52615530 Msa0506340:intron 40.0%
TCTTTGGCCACTCAATCTAA+TGG - chr3_4:52615527-52615546 Msa0506340:intron 40.0%
ATCCTCACCATTAGATTGAG+TGG + chr3_4:52615537-52615556 None:intergenic 40.0%
GGATGCAATGCATCTTTCAT+CGG + chr3_4:52615573-52615592 None:intergenic 40.0%
AGATGCATTGCATCCAATGT+TGG - chr3_4:52615578-52615597 Msa0506340:intron 40.0%
GATGCATTGCATCCAATGTT+GGG - chr3_4:52615579-52615598 Msa0506340:intron 40.0%
AGTGGGTATGGGATTTGATG+AGG + chr3_4:52607795-52607814 None:intergenic 45.0%
GAGAAAACGTGAAGTGGGTA+TGG + chr3_4:52607807-52607826 None:intergenic 45.0%
TCACCCACAAAAGGAAACCT+AGG + chr3_4:52607978-52607997 None:intergenic 45.0%
!! TGACTTGGTTCACCCACAAA+AGG + chr3_4:52607987-52608006 None:intergenic 45.0%
TTGTGGGTGAACCAAGTCAA+AGG - chr3_4:52607988-52608007 Msa0506340:CDS 45.0%
! GATGGGTTCTGACATTGGTA+TGG - chr3_4:52608204-52608223 Msa0506340:CDS 45.0%
CATGAATGGAAGAAAGGGTG+GGG - chr3_4:52608244-52608263 Msa0506340:CDS 45.0%
GCTCAACTTTGCTTCAAGTG+CGG - chr3_4:52608286-52608305 Msa0506340:CDS 45.0%
CTCAACTTTGCTTCAAGTGC+GGG - chr3_4:52608287-52608306 Msa0506340:CDS 45.0%
! CTTACCATTCCGGGATTTTC+TGG - chr3_4:52608472-52608491 Msa0506340:CDS 45.0%
ACAACCAGAAAATCCCGGAA+TGG + chr3_4:52608479-52608498 None:intergenic 45.0%
TGTGGAAGTAGGAGTAGGAA+TGG - chr3_4:52608662-52608681 Msa0506340:intron 45.0%
GTGGAAGTAGGAGTAGGAAT+GGG - chr3_4:52608663-52608682 Msa0506340:intron 45.0%
CTCCATAAATCTAGCATGGC+AGG + chr3_4:52608899-52608918 None:intergenic 45.0%
CTGCCATGCTAGATTTATGG+AGG - chr3_4:52608897-52608916 Msa0506340:CDS 45.0%
ATCCTTCCTCTACGAATTGG+AGG - chr3_4:52609417-52609436 Msa0506340:intron 45.0%
TCCTTCCTCTACGAATTGGA+GGG - chr3_4:52609418-52609437 Msa0506340:intron 45.0%
GTACACATTACAGAGCAGTG+TGG + chr3_4:52609462-52609481 None:intergenic 45.0%
GAGAAGGAAGATATGAGCAG+GGG + chr3_4:52609562-52609581 None:intergenic 45.0%
TCCATCGTCAACAAACTGGT+TGG - chr3_4:52609700-52609719 Msa0506340:intron 45.0%
TAGATACTACGCATCCACTG+TGG + chr3_4:52609846-52609865 None:intergenic 45.0%
TTCGAGTATCTTGACTTCGG+CGG - chr3_4:52609874-52609893 Msa0506340:CDS 45.0%
TATCTTGACTTCGGCGGTAT+AGG - chr3_4:52609880-52609899 Msa0506340:CDS 45.0%
ATCACGAAGGATAATCCTGG+TGG + chr3_4:52610127-52610146 None:intergenic 45.0%
TTGTCCTAATAAGTGGGGTC+GGG + chr3_4:52610236-52610255 None:intergenic 45.0%
CTTGTCCTAATAAGTGGGGT+CGG + chr3_4:52610237-52610256 None:intergenic 45.0%
CCACGACTTGTCCTAATAAG+TGG + chr3_4:52610243-52610262 None:intergenic 45.0%
CCACTTATTAGGACAAGTCG+TGG - chr3_4:52610240-52610259 Msa0506340:CDS 45.0%
CTTATTAGGACAAGTCGTGG+TGG - chr3_4:52610243-52610262 Msa0506340:CDS 45.0%
! TGGCTTTTGAATGTATGGGC+TGG - chr3_4:52610329-52610348 Msa0506340:CDS 45.0%
! GGCTTTTGAATGTATGGGCT+GGG - chr3_4:52610330-52610349 Msa0506340:CDS 45.0%
!! GCTTTTGAATGTATGGGCTG+GGG - chr3_4:52610331-52610350 Msa0506340:CDS 45.0%
GCTTTATGTATAGGGAGAGG+GGG - chr3_4:52610534-52610553 Msa0506340:intron 45.0%
CTTTATGTATAGGGAGAGGG+GGG - chr3_4:52610535-52610554 Msa0506340:intron 45.0%
! TGGGTTGAGCTAAGGGTTAA+AGG - chr3_4:52610568-52610587 Msa0506340:intron 45.0%
GAGCTAAGGGTTAAAGGAGT+TGG - chr3_4:52610574-52610593 Msa0506340:intron 45.0%
CTAAGGGTTAAAGGAGTTGG+AGG - chr3_4:52610577-52610596 Msa0506340:intron 45.0%
TCTTTAGTTGCTCTTGGCCT+TGG - chr3_4:52610912-52610931 Msa0506340:intron 45.0%
!! CATTCCGCTCATTTTGACAG+CGG - chr3_4:52611126-52611145 Msa0506340:intron 45.0%
AAGAAGTTAGGCCGTCATTC+AGG - chr3_4:52611277-52611296 Msa0506340:CDS 45.0%
AGAAGTTAGGCCGTCATTCA+GGG - chr3_4:52611278-52611297 Msa0506340:CDS 45.0%
GCATGCATGAATCAAATGCG+AGG - chr3_4:52611397-52611416 Msa0506340:intron 45.0%
AACAACTCTTTCCCACCATC+TGG - chr3_4:52611456-52611475 Msa0506340:intron 45.0%
ACTACAGACGGAAGACTTGA+GGG - chr3_4:52611486-52611505 Msa0506340:intron 45.0%
GTATCTCCTCCCTTTCATCA+AGG - chr3_4:52611513-52611532 Msa0506340:intron 45.0%
! GGAAGTATAGGACGAGATCT+CGG + chr3_4:52611540-52611559 None:intergenic 45.0%
AGGCCGGTCTTTAACAGTTT+GGG + chr3_4:52611561-52611580 None:intergenic 45.0%
AAGGCCGGTCTTTAACAGTT+TGG + chr3_4:52611562-52611581 None:intergenic 45.0%
CTCAAACAATGGCACTACTG+TGG + chr3_4:52612249-52612268 None:intergenic 45.0%
CTCAGCACCTTCTCAAACAA+TGG + chr3_4:52612260-52612279 None:intergenic 45.0%
! AAACCTCAGCACAGGCTTTT+GGG + chr3_4:52612319-52612338 None:intergenic 45.0%
! ACTCTGAAGGTCTTCCTTTG+CGG - chr3_4:52612522-52612541 Msa0506340:intron 45.0%
CAACAGCAGGATGTACGTAT+TGG - chr3_4:52612601-52612620 Msa0506340:intron 45.0%
AGCAGGATGTACGTATTGGA+GGG - chr3_4:52612605-52612624 Msa0506340:intron 45.0%
ATCCATGGCCTGTATACAAG+GGG + chr3_4:52612636-52612655 None:intergenic 45.0%
ATCACCAGCACGTAAATCCA+TGG + chr3_4:52612651-52612670 None:intergenic 45.0%
! GATTTACGTGCTGGTGATAC+TGG - chr3_4:52612653-52612672 Msa0506340:intron 45.0%
TTTAGTCGGATAGATCCTGG+GGG - chr3_4:52612921-52612940 Msa0506340:intron 45.0%
!! TCCTGGGGGAAAACTTGTTA+TGG - chr3_4:52612935-52612954 Msa0506340:intron 45.0%
!! CCTGGGGGAAAACTTGTTAT+GGG - chr3_4:52612936-52612955 Msa0506340:intron 45.0%
AATTCCGTAGACACACAGGT+TGG - chr3_4:52612975-52612994 Msa0506340:intron 45.0%
GTAACCAACCTGTGTGTCTA+CGG + chr3_4:52612982-52613001 None:intergenic 45.0%
ACGTCTGCACTTTCTAATGG+CGG - chr3_4:52613113-52613132 Msa0506340:intron 45.0%
TGCACTTTCTAATGGCGGTT+CGG - chr3_4:52613118-52613137 Msa0506340:intron 45.0%
TCGACACAATTACTTCCCGA+TGG + chr3_4:52613182-52613201 None:intergenic 45.0%
GATCTTCTCCGTTCACCAAA+TGG - chr3_4:52613200-52613219 Msa0506340:intron 45.0%
CTCCGTTCACCAAATGGTAA+CGG - chr3_4:52613206-52613225 Msa0506340:intron 45.0%
! CTCCGTTACCATTTGGTGAA+CGG + chr3_4:52613211-52613230 None:intergenic 45.0%
CGAAGTTCTCCGTTACCATT+TGG + chr3_4:52613218-52613237 None:intergenic 45.0%
ACATCCCGAACCTTCACATT+TGG - chr3_4:52613247-52613266 Msa0506340:intron 45.0%
GCTCCAGTAACCAAATGTGA+AGG + chr3_4:52613260-52613279 None:intergenic 45.0%
!! GCTAGTCATCTCGCCATTTT+CGG + chr3_4:52613300-52613319 None:intergenic 45.0%
! ACAATGCTTGGCTTGACACT+GGG + chr3_4:52613473-52613492 None:intergenic 45.0%
TCCTCGATTGTGACAATGCT+TGG + chr3_4:52613485-52613504 None:intergenic 45.0%
AACTATTTCGTCCAGGGTGA+AGG - chr3_4:52614416-52614435 Msa0506340:intron 45.0%
GGACATGTTCGGAAAATGTC+TGG - chr3_4:52614511-52614530 Msa0506340:intron 45.0%
CACACAATACAAGAACAGCC+GGG + chr3_4:52615083-52615102 None:intergenic 45.0%
GCACACAATACAAGAACAGC+CGG + chr3_4:52615084-52615103 None:intergenic 45.0%
CACACGTTGCAAGTACATGT+TGG + chr3_4:52615140-52615159 None:intergenic 45.0%
GTTGACGAGTCAGATACCAA+TGG - chr3_4:52615266-52615285 Msa0506340:intron 45.0%
TTCTCTTGATGCTCCACCAT+TGG + chr3_4:52615285-52615304 None:intergenic 45.0%
! GCGAATCCTTTGGAAAACGA+AGG - chr3_4:52615308-52615327 Msa0506340:CDS 45.0%
! AGTCCTCCTTCGTTTTCCAA+AGG + chr3_4:52615317-52615336 None:intergenic 45.0%
AAGATCTATCTTTCCAGCGC+TGG + chr3_4:52615369-52615388 None:intergenic 45.0%
!!! TTTTTATTATATATATCAAT+AGG + chr3_4:52610676-52610695 None:intergenic 5.0%
!! TAATAAACAAAATAAAAATA+TGG + chr3_4:52613562-52613581 None:intergenic 5.0%
AAAGGGTGGGGTTTACGATC+TGG - chr3_4:52608256-52608275 Msa0506340:CDS 50.0%
TGAACTCAGGTTCTCGCGAA+CGG + chr3_4:52609350-52609369 None:intergenic 50.0%
GGCATCCTTCCTCTACGAAT+TGG - chr3_4:52609414-52609433 Msa0506340:intron 50.0%
ACCCTCCAATTCGTAGAGGA+AGG + chr3_4:52609422-52609441 None:intergenic 50.0%
GCTAACCCTCCAATTCGTAG+AGG + chr3_4:52609426-52609445 None:intergenic 50.0%
!! GCCAACCAGTTTGTTGACGA+TGG + chr3_4:52609704-52609723 None:intergenic 50.0%
ACTACGCATCCACTGTGGAT+AGG + chr3_4:52609841-52609860 None:intergenic 50.0%
TGCATACGATATTGGCCACC+AGG - chr3_4:52610109-52610128 Msa0506340:CDS 50.0%
TGTACCCGACCCCACTTATT+AGG - chr3_4:52610229-52610248 Msa0506340:CDS 50.0%
! AGCTCAACTGGGTTGAGCTA+AGG - chr3_4:52610560-52610579 Msa0506340:intron 50.0%
! GCTCAACTGGGTTGAGCTAA+GGG - chr3_4:52610561-52610580 Msa0506340:intron 50.0%
GTTAAAGGAGTTGGAGGTCC+TGG - chr3_4:52610583-52610602 Msa0506340:intron 50.0%
GTTATGTTCGGGCTTGAACC+AGG + chr3_4:52610604-52610623 None:intergenic 50.0%
GTCGATGAAACGGGCCATTT+AGG + chr3_4:52611084-52611103 None:intergenic 50.0%
CAGTCCGCTGTCAAAATGAG+CGG + chr3_4:52611133-52611152 None:intergenic 50.0%
TTAGGCCGTCATTCAGGGAA+GGG - chr3_4:52611283-52611302 Msa0506340:CDS 50.0%
GTATCCCCTTCCCTGAATGA+CGG + chr3_4:52611291-52611310 None:intergenic 50.0%
TCATTCAGGGAAGGGGATAC+TGG - chr3_4:52611291-52611310 Msa0506340:CDS 50.0%
ATGTGTTTGGGAAACCCGTC+AGG - chr3_4:52611432-52611451 Msa0506340:intron 50.0%
TGTGTTTGGGAAACCCGTCA+GGG - chr3_4:52611433-52611452 Msa0506340:intron 50.0%
GGAAAGAGTTGTTCCCTGAC+GGG + chr3_4:52611449-52611468 None:intergenic 50.0%
GGGAAAGAGTTGTTCCCTGA+CGG + chr3_4:52611450-52611469 None:intergenic 50.0%
AACTCTTTCCCACCATCTGG+TGG - chr3_4:52611459-52611478 Msa0506340:intron 50.0%
TAGTCTCTCCACCAGATGGT+GGG + chr3_4:52611470-52611489 None:intergenic 50.0%
TCTGTAGTCTCTCCACCAGA+TGG + chr3_4:52611474-52611493 None:intergenic 50.0%
TCTGGTGGAGAGACTACAGA+CGG - chr3_4:52611474-52611493 Msa0506340:intron 50.0%
GACTACAGACGGAAGACTTG+AGG - chr3_4:52611485-52611504 Msa0506340:intron 50.0%
GATCTCGGCCCTTGATGAAA+GGG + chr3_4:52611525-52611544 None:intergenic 50.0%
AGATCTCGGCCCTTGATGAA+AGG + chr3_4:52611526-52611545 None:intergenic 50.0%
GCAGGGATCAAGTTACTCCA+AGG + chr3_4:52612132-52612151 None:intergenic 50.0%
! CAAACCTCAGCACAGGCTTT+TGG + chr3_4:52612320-52612339 None:intergenic 50.0%
! CTCTGAAGGTCTTCCTTTGC+GGG - chr3_4:52612523-52612542 Msa0506340:intron 50.0%
TTCACATCTTGGACCCGCAA+AGG + chr3_4:52612539-52612558 None:intergenic 50.0%
TTTGCGGGTCCAAGATGTGA+AGG - chr3_4:52612538-52612557 Msa0506340:intron 50.0%
TTGCGGGTCCAAGATGTGAA+GGG - chr3_4:52612539-52612558 Msa0506340:intron 50.0%
CAGCAGGATGTACGTATTGG+AGG - chr3_4:52612604-52612623 Msa0506340:intron 50.0%
! CCCATAACAAGTTTTCCCCC+AGG + chr3_4:52612939-52612958 None:intergenic 50.0%
! TTCTAATGGCGGTTCGGCAA+AGG - chr3_4:52613124-52613143 Msa0506340:intron 50.0%
! TCTAATGGCGGTTCGGCAAA+GGG - chr3_4:52613125-52613144 Msa0506340:intron 50.0%
! GCAAAGGGAGACACCTTTTC+TGG - chr3_4:52613140-52613159 Msa0506340:intron 50.0%
! AAGGGAGACACCTTTTCTGG+TGG - chr3_4:52613143-52613162 Msa0506340:intron 50.0%
CATTTGGTTACTGGAGCTGC+TGG - chr3_4:52613263-52613282 Msa0506340:intron 50.0%
! GACAATGCTTGGCTTGACAC+TGG + chr3_4:52613474-52613493 None:intergenic 50.0%
! GCCAAGCATTGTCACAATCG+AGG - chr3_4:52613481-52613500 Msa0506340:intron 50.0%
ATCTTCAGCGCCTCTTCATC+TGG - chr3_4:52613711-52613730 Msa0506340:CDS 50.0%
TCTTCAGCGCCTCTTCATCT+GGG - chr3_4:52613712-52613731 Msa0506340:CDS 50.0%
GGACTCTTACCCAGATGAAG+AGG + chr3_4:52613724-52613743 None:intergenic 50.0%
!! GGAGGAAGAAGAGCATCAAC+CGG + chr3_4:52614486-52614505 None:intergenic 50.0%
ATGCTCTTCTTCCTCCCAAG+TGG - chr3_4:52614490-52614509 Msa0506340:intron 50.0%
TCCTCCCAAGTGGACATGTT+CGG - chr3_4:52614500-52614519 Msa0506340:intron 50.0%
CAGATCTTCATGTTCCGCAC+CGG - chr3_4:52614650-52614669 Msa0506340:intron 50.0%
ATCCAAGAACACGAGCCTTC+TGG - chr3_4:52614960-52614979 Msa0506340:intron 50.0%
!! CTCGCCAGTTTAGCCGTTTT+AGG - chr3_4:52614993-52615012 Msa0506340:intron 50.0%
! GTGTCTAGGATGTTTCGTGG+TGG + chr3_4:52615057-52615076 None:intergenic 50.0%
! ACGGTGTCTAGGATGTTTCG+TGG + chr3_4:52615060-52615079 None:intergenic 50.0%
AAACATCCTAGACACCGTCC+CGG - chr3_4:52615062-52615081 Msa0506340:intron 50.0%
CAATACAAGAACAGCCGGGA+CGG + chr3_4:52615079-52615098 None:intergenic 50.0%
ATTCAGCCACCAAGCGGAAA+AGG - chr3_4:52615104-52615123 Msa0506340:intron 50.0%
TTCAGCCACCAAGCGGAAAA+GGG - chr3_4:52615105-52615124 Msa0506340:intron 50.0%
! TTGTGTCTCCCTTTTCCGCT+TGG + chr3_4:52615116-52615135 None:intergenic 50.0%
!! CGTTTTGAACCGACGCTTCA+CGG + chr3_4:52615168-52615187 None:intergenic 50.0%
GACGAGTCAGATACCAATGG+TGG - chr3_4:52615269-52615288 Msa0506340:intron 50.0%
ACTTGCGAGTCATCGCGATT+GGG + chr3_4:52615401-52615420 None:intergenic 50.0%
GGCCACTCAATCTAATGGTG+AGG - chr3_4:52615532-52615551 Msa0506340:intron 50.0%
GAACTCAGGTTCTCGCGAAC+GGG + chr3_4:52609349-52609368 None:intergenic 55.0%
GTTCTGCAGCCTATCCACAG+TGG - chr3_4:52609829-52609848 Msa0506340:intron 55.0%
AGAGGGGGGATAGCTCAACT+GGG - chr3_4:52610549-52610568 Msa0506340:intron 55.0%
GTTAGGCCGTCATTCAGGGA+AGG - chr3_4:52611282-52611301 Msa0506340:CDS 55.0%
TAGGCCGTCATTCAGGGAAG+GGG - chr3_4:52611284-52611303 Msa0506340:CDS 55.0%
GTAGTCTCTCCACCAGATGG+TGG + chr3_4:52611471-52611490 None:intergenic 55.0%
TTCTTACCCCTCCCATCACC+AGG + chr3_4:52611642-52611661 None:intergenic 55.0%
TTGGCCTAGGATTACGGACC+AGG - chr3_4:52611680-52611699 Msa0506340:intron 55.0%
AGCTCCTGGTCCGTAATCCT+AGG + chr3_4:52611687-52611706 None:intergenic 55.0%
TAGGATTACGGACCAGGAGC+TGG - chr3_4:52611686-52611705 Msa0506340:intron 55.0%
TGAGTGCCAGTGATGCAGGT+CGG - chr3_4:52612276-52612295 Msa0506340:CDS 55.0%
ACCAATCCGACCTGCATCAC+TGG + chr3_4:52612285-52612304 None:intergenic 55.0%
TCTCCCAAAAGCCTGTGCTG+AGG - chr3_4:52612313-52612332 Msa0506340:CDS 55.0%
GGGTGTGACCCCTTGTATAC+AGG - chr3_4:52612625-52612644 Msa0506340:intron 55.0%
GACCCCTTGTATACAGGCCA+TGG - chr3_4:52612631-52612650 Msa0506340:intron 55.0%
CAGGCCATGGATTTACGTGC+TGG - chr3_4:52612644-52612663 Msa0506340:intron 55.0%
! ATGCTTGGCTTGACACTGGG+CGG + chr3_4:52613470-52613489 None:intergenic 55.0%
GTCCAGGGTGAAGGAACAGT+GGG - chr3_4:52614425-52614444 Msa0506340:intron 55.0%
TCCGAACATGTCCACTTGGG+AGG + chr3_4:52614504-52614523 None:intergenic 55.0%
CGAGCTGAGCTCAAGGGAAT+TGG - chr3_4:52614674-52614693 Msa0506340:intron 55.0%
AGCCAGAAGGCTCGTGTTCT+TGG + chr3_4:52614965-52614984 None:intergenic 55.0%
GTGTGCATTCAGCCACCAAG+CGG - chr3_4:52615098-52615117 Msa0506340:intron 55.0%
! TGTCTCCCTTTTCCGCTTGG+TGG + chr3_4:52615113-52615132 None:intergenic 55.0%
TGTGTACGACCGTGAAGCGT+CGG - chr3_4:52615156-52615175 Msa0506340:intron 55.0%
CACTTGCGAGTCATCGCGAT+TGG + chr3_4:52615402-52615421 None:intergenic 55.0%
CAATCGCGATGACTCGCAAG+TGG - chr3_4:52615400-52615419 Msa0506340:intron 55.0%
! CGGTTCTTGGACCGCCATTT+TGG + chr3_4:52615475-52615494 None:intergenic 55.0%
GGGTGGGGTTTACGATCTGG+TGG - chr3_4:52608259-52608278 Msa0506340:CDS 60.0%
! CTCGCGAACGGGTCGACTTT+AGG + chr3_4:52609338-52609357 None:intergenic 60.0%
GAGAGGGGGGATAGCTCAAC+TGG - chr3_4:52610548-52610567 Msa0506340:intron 60.0%
CTCGGCCCTTGATGAAAGGG+AGG + chr3_4:52611522-52611541 None:intergenic 60.0%
ATTGCTCGGCCTCCTGGTGA+TGG - chr3_4:52611627-52611646 Msa0506340:intron 60.0%
TTGCTCGGCCTCCTGGTGAT+GGG - chr3_4:52611628-52611647 Msa0506340:intron 60.0%
TTACCCCTCCCATCACCAGG+AGG + chr3_4:52611639-52611658 None:intergenic 60.0%
CAGACAAACGCTCCAGCTCC+TGG + chr3_4:52611701-52611720 None:intergenic 60.0%
! CAGGAGCTGGAGCGTTTGTC+TGG - chr3_4:52611699-52611718 Msa0506340:intron 60.0%
GTGCTGAGTGCCAGTGATGC+AGG - chr3_4:52612272-52612291 Msa0506340:CDS 60.0%
GCCAGTGATGCAGGTCGGAT+TGG - chr3_4:52612281-52612300 Msa0506340:CDS 60.0%
CGTCCAGGGTGAAGGAACAG+TGG - chr3_4:52614424-52614443 Msa0506340:intron 60.0%
AGCCCACTGTTCCTTCACCC+TGG + chr3_4:52614430-52614449 None:intergenic 60.0%
ACCGGACGAGCTGAGCTCAA+GGG - chr3_4:52614668-52614687 Msa0506340:intron 60.0%
TCCCTTGAGCTCAGCTCGTC+CGG + chr3_4:52614672-52614691 None:intergenic 60.0%
!! GCGAGAGCGTCTAAGCCAGA+AGG + chr3_4:52614978-52614997 None:intergenic 60.0%
CTCCAGCTGCGGAATCAGCA+GGG + chr3_4:52615034-52615053 None:intergenic 60.0%
TTTCGTGGTGGCTCCAGCTG+CGG + chr3_4:52615045-52615064 None:intergenic 60.0%
CCAGGAGGCCGAGCAATACG+TGG + chr3_4:52611624-52611643 None:intergenic 65.0%
CCACGTATTGCTCGGCCTCC+TGG - chr3_4:52611621-52611640 Msa0506340:intron 65.0%
!! TCGGCCTCCTGGTGATGGGA+GGG - chr3_4:52611632-52611651 Msa0506340:intron 65.0%
! CTTGGCTTGACACTGGGCGG+TGG + chr3_4:52613467-52613486 None:intergenic 65.0%
TGAGCTCAGCTCGTCCGGTG+CGG + chr3_4:52614667-52614686 None:intergenic 65.0%
CACCGGACGAGCTGAGCTCA+AGG - chr3_4:52614667-52614686 Msa0506340:intron 65.0%
GCTCCAGCTGCGGAATCAGC+AGG + chr3_4:52615035-52615054 None:intergenic 65.0%
GAACAGCCGGGACGGTGTCT+AGG + chr3_4:52615071-52615090 None:intergenic 65.0%
!! CTCGGCCTCCTGGTGATGGG+AGG - chr3_4:52611631-52611650 Msa0506340:intron 70.0%
!! CGGCCTCCTGGTGATGGGAG+GGG - chr3_4:52611633-52611652 Msa0506340:intron 70.0%
!! GGCCCTGCTGATTCCGCAGC+TGG - chr3_4:52615029-52615048 Msa0506340:intron 70.0%
GAGGTTGGCGAGTCCAGCGC+TGG - chr3_4:52615353-52615372 Msa0506340:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 52607678 52615923 52607678 ID=Msa0506340;Name=Msa0506340
chr3_4 mRNA 52607678 52615923 52607678 ID=Msa0506340-mRNA-1;Parent=Msa0506340;Name=Msa0506340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=186|0.91|1|1|0.91|0.84|13|259|898
chr3_4 exon 52607678 52608679 52607678 ID=Msa0506340-mRNA-1:exon:11499;Parent=Msa0506340-mRNA-1
chr3_4 exon 52608881 52608948 52608881 ID=Msa0506340-mRNA-1:exon:11498;Parent=Msa0506340-mRNA-1
chr3_4 exon 52609057 52609170 52609057 ID=Msa0506340-mRNA-1:exon:11497;Parent=Msa0506340-mRNA-1
chr3_4 exon 52609868 52609917 52609868 ID=Msa0506340-mRNA-1:exon:11496;Parent=Msa0506340-mRNA-1
chr3_4 exon 52610075 52610497 52610075 ID=Msa0506340-mRNA-1:exon:11495;Parent=Msa0506340-mRNA-1
chr3_4 exon 52610609 52610685 52610609 ID=Msa0506340-mRNA-1:exon:11494;Parent=Msa0506340-mRNA-1
chr3_4 exon 52610927 52611101 52610927 ID=Msa0506340-mRNA-1:exon:11493;Parent=Msa0506340-mRNA-1
chr3_4 exon 52611267 52611363 52611267 ID=Msa0506340-mRNA-1:exon:11492;Parent=Msa0506340-mRNA-1
chr3_4 exon 52611877 52612538 52611877 ID=Msa0506340-mRNA-1:exon:11491;Parent=Msa0506340-mRNA-1
chr3_4 exon 52613662 52613763 52613662 ID=Msa0506340-mRNA-1:exon:11490;Parent=Msa0506340-mRNA-1
chr3_4 exon 52613855 52613936 52613855 ID=Msa0506340-mRNA-1:exon:11489;Parent=Msa0506340-mRNA-1
chr3_4 exon 52615293 52615418 52615293 ID=Msa0506340-mRNA-1:exon:11488;Parent=Msa0506340-mRNA-1
chr3_4 exon 52615760 52615923 52615760 ID=Msa0506340-mRNA-1:exon:11487;Parent=Msa0506340-mRNA-1
chr3_4 five_prime_UTR 52615760 52615923 52615760 ID=Msa0506340-mRNA-1:five_prime_utr;Parent=Msa0506340-mRNA-1
chr3_4 five_prime_UTR 52615397 52615418 52615397 ID=Msa0506340-mRNA-1:five_prime_utr;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52615293 52615396 52615293 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52613855 52613936 52613855 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52613662 52613763 52613662 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52611877 52612538 52611877 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52611267 52611363 52611267 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52610927 52611101 52610927 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52610609 52610685 52610609 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52610075 52610497 52610075 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52609868 52609917 52609868 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52609057 52609170 52609057 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52608881 52608948 52608881 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 CDS 52607937 52608679 52607937 ID=Msa0506340-mRNA-1:cds;Parent=Msa0506340-mRNA-1
chr3_4 three_prime_UTR 52607678 52607936 52607678 ID=Msa0506340-mRNA-1:three_prime_utr;Parent=Msa0506340-mRNA-1
Gene Sequence

>Msa0506340

ATGGGTTCTGACATTGGTATGGTAAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGGGTTTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATCTTCCTTTGAGAGTTCAGTTTTTTGTAATAAATTCCATCGTCAACAAACTGGTTGGCGAGAGTGTAACATTTGCAACAAGCCTATCCACAGTGGATGCGTAGTATCTAAATCTCTGTTCGAGTATCTTGACTTCGGCGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTAAATATGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATCGACCCAAAATAATGCAAGGGATATTCATTCCGCTCATTTTGACAGCGGACTGTTTATGAGTAATGTTGATGAAGGCAAGCTTATGCAATTATGCAGAGTTGTTGAAGCTAGTGAATCTATCCATATGAGTCATGCTCCGATAAACAACATGATTACATCTAATGGGAAAAACAATCAAGAAGTTAGGCCGTCATTCAGGGAAGGGGATACTGGATTTTCAAATGTGATTAAACCGCCTGTTCAGTCATTAACTTTTGCCACGTTAGAAAATAATAGACCAGCATGGGAGATTAAAAGCATGCATGAATCAAATGCGAGGCCGTCTTTGAATATGTGTTTGGGAAACCCGTCAGGGAACAACTCTTTCCCACCATCTGGTGGAGAGACTACAGACGGAAGACTTGAGGGAAAAGTATCTCCTCCCTTTCATCAAGGGCCGAGATCTCGTCCTATACTTCCCAAACTGTTAAAGACCGGCCTTACCATGAATATAGAAACTGAAAAAGGGACACTTTCTCAACCACGTATTGCTCGGCCTCCTGGTGATGGGAGGGGTAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGACCAGGAGCTGGAGCGTTTGTCTGGAGATTTGAAGTCCACAGTAGTGCCATTGTTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCATATTACACACTCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGTAATGAATGGACTTTTCAATTCAGATTTTGGCCTAATAACAACAGCAGGATGTACGTATTGGAGGGTGTGACCCCTTGTATACAGGCCATGGATTTACGTGCTGGTGATACTGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCGTAGACACACAGGATGCTTCTACGTCTGCACTTTCTAATGGCGGTTCGGCAAAGGGAGACACCTTTTCTGGTGGAAATGAGAATCTTCCATCGGGAAGTAATTGTGTCGATCTTCTCCGTTCACCAAATGGTAACGGAGAACTTCGCTTAAATGGACATCCCGAACCTTCACATTTGGTTACTGGAGCTGCTGGTTTGCTTAAAGCCGAAAATGGCGAGATGACTAGCAATAATTCACTGGACCAGAAAAATTCAGCTTCAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGATGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCACAAGATTTGCTTCGTCCACCGCCCAGTGTCAAGCCAAGCATTGTCACAATCGAGGATCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACAATCTTCAGCGCCTCTTCATCTGGGGTGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGTTACCGGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCGGAAAATGTCTGGGATACAAGCAGATCTTCATGTTCCGCACCGGACGAGCTGAGCTCAAGGGAATTGGAAAATCTTTTGAAATCTAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGACGCTCTCGCCAGTTTAGCCGTTTTAGGAGAAAATCTCTTGGGCCCTGCTGATTCCGCAGCTGGAGCCACCACGAAACATCCTAGACACCGTCCCGGCTGTTCTTGTATTGTGTGCATTCAGCCACCAAGCGGAAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGTACGACCGTGAAGCGTCGGTTCAAAACGCTTATGCTACGCAAGAAGAAACGACAATCAGAGCGTGAAGCAGATGCCGCCGCCAAAAAAGAACACATTCACAACAGAGTTGACGAGTCAGATACCAATGGTGGAGCATCAAGAGAAGTTGCGAATCCTTTGGAAAACGAAGGAGGACTAAATAGAGGTCAAGTTGAGGTTGGCGAGTCCAGCGCTGGAAAGATAGATCTTAATTGTCATCCCAATCGCGATGACTCGCAAGTGGATAATGTAGCAAAACTTAGTGATCATATATGGGAACATATTAATATGAACCAAAATGGCGGTCCAAGAACCGTTAATACTGAAATGCAGGAAGGTCAACATTCTTCTTTGGCCACTCAATCTAATGGTGAGGATACGAGACACTTGTCCGATGAAAGATGCATTGCATCCAATGTTGGGAACAAAGAAAGAAGAGATGAGGTATTAAATCATTCAAATGAAAGTGAAAAGAATCTGTCTTGA
Protein sequence

>Msa0506340

MGSDIGMVNGSCVHEWKKGWGLRSGGFAQLCFKCGSSFESSVFCNKFHRQQTGWRECNICNKPIHSGCVVSKSLFEYLDFGGIGCVSCVNTSQLNMIRNTENPKWPVSSTQNNARDIHSAHFDSGLFMSNVDEGKLMQLCRVVEASESIHMSHAPINNMITSNGKNNQEVRPSFREGDTGFSNVIKPPVQSLTFATLENNRPAWEIKSMHESNARPSLNMCLGNPSGNNSFPPSGGETTDGRLEGKVSPPFHQGPRSRPILPKLLKTGLTMNIETEKGTLSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHITHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSVDTQDASTSALSNGGSAKGDTFSGGNENLPSGSNCVDLLRSPNGNGELRLNGHPEPSHLVTGAAGLLKAENGEMTSNNSLDQKNSASEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGVKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSAPDELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLLGPADSAAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKEHIHNRVDESDTNGGASREVANPLENEGGLNRGQVEVGESSAGKIDLNCHPNRDDSQVDNVAKLSDHIWEHINMNQNGGPRTVNTEMQEGQHSSLATQSNGEDTRHLSDERCIASNVGNKERRDEVLNHSNESEKNLS*